Multiple sequence alignment - TraesCS3D01G371100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G371100 chr3D 100.000 3164 0 0 1 3164 484731511 484728348 0.000000e+00 5843.0
1 TraesCS3D01G371100 chr3D 93.223 723 42 5 215 931 526481856 526481135 0.000000e+00 1057.0
2 TraesCS3D01G371100 chr3D 86.760 287 29 4 2883 3164 484675877 484675595 8.520000e-81 311.0
3 TraesCS3D01G371100 chr3D 93.720 207 13 0 6 212 566447804 566447598 8.520000e-81 311.0
4 TraesCS3D01G371100 chr3D 94.444 180 9 1 2207 2386 32278346 32278168 3.110000e-70 276.0
5 TraesCS3D01G371100 chr3D 88.235 221 22 3 2152 2371 115033754 115033971 8.700000e-66 261.0
6 TraesCS3D01G371100 chr3A 94.385 1300 59 4 918 2210 627789650 627788358 0.000000e+00 1984.0
7 TraesCS3D01G371100 chr3A 90.000 330 17 12 2730 3055 627788116 627787799 2.270000e-111 412.0
8 TraesCS3D01G371100 chr3A 93.750 208 12 1 6 213 127350320 127350526 8.520000e-81 311.0
9 TraesCS3D01G371100 chr3A 89.394 198 6 4 2369 2565 627788357 627788174 5.280000e-58 235.0
10 TraesCS3D01G371100 chr3A 94.783 115 3 1 3053 3164 627787755 627787641 3.240000e-40 176.0
11 TraesCS3D01G371100 chr3B 93.598 1312 57 11 918 2211 647477750 647476448 0.000000e+00 1932.0
12 TraesCS3D01G371100 chr3B 95.082 305 12 1 2863 3164 647476060 647475756 7.940000e-131 477.0
13 TraesCS3D01G371100 chr3B 87.543 289 27 5 2883 3164 647468229 647467943 3.040000e-85 326.0
14 TraesCS3D01G371100 chr3B 94.388 196 10 1 2614 2809 647476259 647476065 1.840000e-77 300.0
15 TraesCS3D01G371100 chr3B 94.512 164 9 0 2208 2371 703118541 703118704 1.460000e-63 254.0
16 TraesCS3D01G371100 chr3B 92.179 179 11 3 2204 2380 519806483 519806306 1.880000e-62 250.0
17 TraesCS3D01G371100 chr3B 92.135 178 12 1 2199 2376 576481098 576480923 1.880000e-62 250.0
18 TraesCS3D01G371100 chr3B 92.982 171 12 0 2208 2378 810265402 810265572 1.880000e-62 250.0
19 TraesCS3D01G371100 chr2A 85.302 1143 131 19 1075 2202 530675855 530676975 0.000000e+00 1146.0
20 TraesCS3D01G371100 chr2A 84.070 1199 149 22 1023 2202 528126350 528125175 0.000000e+00 1118.0
21 TraesCS3D01G371100 chr2A 92.968 711 44 3 212 919 760759344 760760051 0.000000e+00 1031.0
22 TraesCS3D01G371100 chr2D 84.258 1207 149 23 1013 2202 391396372 391395190 0.000000e+00 1138.0
23 TraesCS3D01G371100 chr2D 84.897 1119 143 10 1093 2202 392683896 392684997 0.000000e+00 1107.0
24 TraesCS3D01G371100 chr2D 93.671 711 35 3 212 919 489651631 489652334 0.000000e+00 1055.0
25 TraesCS3D01G371100 chr2D 92.938 708 44 2 215 919 54889830 54889126 0.000000e+00 1026.0
26 TraesCS3D01G371100 chr2D 91.827 208 16 1 6 213 88741997 88742203 3.990000e-74 289.0
27 TraesCS3D01G371100 chr2D 96.532 173 6 0 2205 2377 421134031 421134203 1.440000e-73 287.0
28 TraesCS3D01G371100 chr2D 95.480 177 6 2 2208 2382 252715218 252715042 6.680000e-72 281.0
29 TraesCS3D01G371100 chr2D 95.930 172 7 0 2201 2372 411726359 411726188 2.400000e-71 279.0
30 TraesCS3D01G371100 chr2B 84.080 1206 153 22 1013 2202 462953821 462952639 0.000000e+00 1127.0
31 TraesCS3D01G371100 chr5D 94.937 711 33 1 212 919 326744214 326744924 0.000000e+00 1110.0
32 TraesCS3D01G371100 chr5D 93.237 207 14 0 6 212 434724365 434724571 3.960000e-79 305.0
33 TraesCS3D01G371100 chr5D 96.491 171 4 1 2208 2376 391052970 391052800 6.680000e-72 281.0
34 TraesCS3D01G371100 chr5D 95.429 175 8 0 2204 2378 528841996 528841822 2.400000e-71 279.0
35 TraesCS3D01G371100 chr5D 90.385 52 3 2 2571 2620 6825793 6825844 2.040000e-07 67.6
36 TraesCS3D01G371100 chr4D 93.944 710 38 3 215 921 145625085 145624378 0.000000e+00 1068.0
37 TraesCS3D01G371100 chrUn 93.662 710 41 2 215 921 79925845 79925137 0.000000e+00 1059.0
38 TraesCS3D01G371100 chrUn 92.887 717 43 2 215 923 108948886 108948170 0.000000e+00 1035.0
39 TraesCS3D01G371100 chr7D 92.968 711 44 4 215 922 147576874 147576167 0.000000e+00 1031.0
40 TraesCS3D01G371100 chr7D 94.624 186 6 2 2191 2372 185180205 185180390 5.170000e-73 285.0
41 TraesCS3D01G371100 chr1D 76.489 974 199 17 1160 2127 447911210 447912159 1.310000e-138 503.0
42 TraesCS3D01G371100 chr6D 94.231 208 12 0 6 213 18023226 18023019 5.090000e-83 318.0
43 TraesCS3D01G371100 chr6D 94.444 180 7 2 2192 2371 454801426 454801250 1.120000e-69 274.0
44 TraesCS3D01G371100 chr6D 100.000 34 0 0 2573 2606 272644319 272644352 2.630000e-06 63.9
45 TraesCS3D01G371100 chr6A 94.175 206 12 0 8 213 146537811 146538016 6.590000e-82 315.0
46 TraesCS3D01G371100 chr6A 92.195 205 16 0 6 210 100578456 100578660 1.110000e-74 291.0
47 TraesCS3D01G371100 chr7B 92.718 206 15 0 8 213 700347322 700347117 6.630000e-77 298.0
48 TraesCS3D01G371100 chr5A 92.271 207 16 0 6 212 131800354 131800148 8.580000e-76 294.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G371100 chr3D 484728348 484731511 3163 True 5843.00 5843 100.0000 1 3164 1 chr3D.!!$R3 3163
1 TraesCS3D01G371100 chr3D 526481135 526481856 721 True 1057.00 1057 93.2230 215 931 1 chr3D.!!$R4 716
2 TraesCS3D01G371100 chr3A 627787641 627789650 2009 True 701.75 1984 92.1405 918 3164 4 chr3A.!!$R1 2246
3 TraesCS3D01G371100 chr3B 647475756 647477750 1994 True 903.00 1932 94.3560 918 3164 3 chr3B.!!$R4 2246
4 TraesCS3D01G371100 chr2A 530675855 530676975 1120 False 1146.00 1146 85.3020 1075 2202 1 chr2A.!!$F1 1127
5 TraesCS3D01G371100 chr2A 528125175 528126350 1175 True 1118.00 1118 84.0700 1023 2202 1 chr2A.!!$R1 1179
6 TraesCS3D01G371100 chr2A 760759344 760760051 707 False 1031.00 1031 92.9680 212 919 1 chr2A.!!$F2 707
7 TraesCS3D01G371100 chr2D 391395190 391396372 1182 True 1138.00 1138 84.2580 1013 2202 1 chr2D.!!$R3 1189
8 TraesCS3D01G371100 chr2D 392683896 392684997 1101 False 1107.00 1107 84.8970 1093 2202 1 chr2D.!!$F2 1109
9 TraesCS3D01G371100 chr2D 489651631 489652334 703 False 1055.00 1055 93.6710 212 919 1 chr2D.!!$F4 707
10 TraesCS3D01G371100 chr2D 54889126 54889830 704 True 1026.00 1026 92.9380 215 919 1 chr2D.!!$R1 704
11 TraesCS3D01G371100 chr2B 462952639 462953821 1182 True 1127.00 1127 84.0800 1013 2202 1 chr2B.!!$R1 1189
12 TraesCS3D01G371100 chr5D 326744214 326744924 710 False 1110.00 1110 94.9370 212 919 1 chr5D.!!$F2 707
13 TraesCS3D01G371100 chr4D 145624378 145625085 707 True 1068.00 1068 93.9440 215 921 1 chr4D.!!$R1 706
14 TraesCS3D01G371100 chrUn 79925137 79925845 708 True 1059.00 1059 93.6620 215 921 1 chrUn.!!$R1 706
15 TraesCS3D01G371100 chrUn 108948170 108948886 716 True 1035.00 1035 92.8870 215 923 1 chrUn.!!$R2 708
16 TraesCS3D01G371100 chr7D 147576167 147576874 707 True 1031.00 1031 92.9680 215 922 1 chr7D.!!$R1 707
17 TraesCS3D01G371100 chr1D 447911210 447912159 949 False 503.00 503 76.4890 1160 2127 1 chr1D.!!$F1 967

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.318529 CTCACCGCTCTCCGATGATG 60.319 60.000 0.00 0.00 39.15 3.07 F
172 173 0.459759 GAAGCCCTCCGGTAACTTCG 60.460 60.000 0.00 0.00 0.00 3.79 F
191 192 0.670854 GGAGTGGAGTTCTCCGTTGC 60.671 60.000 13.27 6.34 41.36 4.17 F
1443 1479 1.080772 CCTCGTGCTGCTACGTGAA 60.081 57.895 20.01 6.39 44.06 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1364 1400 1.375908 GCATCCTCCAACTCACGCA 60.376 57.895 0.00 0.0 0.00 5.24 R
1458 1497 2.437343 CGTCTTCGCGTTGCTCTCC 61.437 63.158 5.77 0.0 0.00 3.71 R
1461 1500 4.135493 GCCGTCTTCGCGTTGCTC 62.135 66.667 5.77 0.0 35.54 4.26 R
2817 2895 0.040067 GAAACCGCTCCTGCACTTTG 60.040 55.000 0.00 0.0 39.64 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.463879 CACCGCCCCTCAGCTCAG 62.464 72.222 0.00 0.00 0.00 3.35
34 35 4.106925 CCCTCAGCTCAGCCCCAC 62.107 72.222 0.00 0.00 0.00 4.61
35 36 4.106925 CCTCAGCTCAGCCCCACC 62.107 72.222 0.00 0.00 0.00 4.61
36 37 4.106925 CTCAGCTCAGCCCCACCC 62.107 72.222 0.00 0.00 0.00 4.61
88 89 4.803426 CGCCGCTCCACCACTCTC 62.803 72.222 0.00 0.00 0.00 3.20
89 90 3.695606 GCCGCTCCACCACTCTCA 61.696 66.667 0.00 0.00 0.00 3.27
90 91 2.262915 CCGCTCCACCACTCTCAC 59.737 66.667 0.00 0.00 0.00 3.51
91 92 2.262915 CGCTCCACCACTCTCACC 59.737 66.667 0.00 0.00 0.00 4.02
92 93 2.262915 GCTCCACCACTCTCACCG 59.737 66.667 0.00 0.00 0.00 4.94
93 94 2.262915 CTCCACCACTCTCACCGC 59.737 66.667 0.00 0.00 0.00 5.68
94 95 2.203640 TCCACCACTCTCACCGCT 60.204 61.111 0.00 0.00 0.00 5.52
95 96 2.219325 CTCCACCACTCTCACCGCTC 62.219 65.000 0.00 0.00 0.00 5.03
96 97 2.279069 CCACCACTCTCACCGCTCT 61.279 63.158 0.00 0.00 0.00 4.09
97 98 1.214062 CACCACTCTCACCGCTCTC 59.786 63.158 0.00 0.00 0.00 3.20
98 99 1.979693 ACCACTCTCACCGCTCTCC 60.980 63.158 0.00 0.00 0.00 3.71
99 100 2.487428 CACTCTCACCGCTCTCCG 59.513 66.667 0.00 0.00 0.00 4.63
100 101 2.041115 CACTCTCACCGCTCTCCGA 61.041 63.158 0.00 0.00 40.02 4.55
101 102 1.077357 ACTCTCACCGCTCTCCGAT 60.077 57.895 0.00 0.00 40.02 4.18
102 103 1.358402 CTCTCACCGCTCTCCGATG 59.642 63.158 0.00 0.00 40.02 3.84
103 104 1.077716 TCTCACCGCTCTCCGATGA 60.078 57.895 0.00 0.00 37.06 2.92
104 105 0.466372 TCTCACCGCTCTCCGATGAT 60.466 55.000 0.00 0.00 39.15 2.45
105 106 0.318529 CTCACCGCTCTCCGATGATG 60.319 60.000 0.00 0.00 39.15 3.07
106 107 1.953138 CACCGCTCTCCGATGATGC 60.953 63.158 0.00 0.00 40.02 3.91
107 108 2.356793 CCGCTCTCCGATGATGCC 60.357 66.667 0.00 0.00 40.02 4.40
108 109 2.732468 CGCTCTCCGATGATGCCG 60.732 66.667 0.00 0.00 40.02 5.69
109 110 2.730733 GCTCTCCGATGATGCCGA 59.269 61.111 0.00 0.00 0.00 5.54
110 111 1.068083 GCTCTCCGATGATGCCGAA 59.932 57.895 0.00 0.00 0.00 4.30
111 112 0.943359 GCTCTCCGATGATGCCGAAG 60.943 60.000 0.00 0.00 0.00 3.79
112 113 0.670706 CTCTCCGATGATGCCGAAGA 59.329 55.000 0.00 0.00 0.00 2.87
113 114 1.067669 CTCTCCGATGATGCCGAAGAA 59.932 52.381 0.00 0.00 0.00 2.52
114 115 1.067669 TCTCCGATGATGCCGAAGAAG 59.932 52.381 0.00 0.00 0.00 2.85
115 116 1.067669 CTCCGATGATGCCGAAGAAGA 59.932 52.381 0.00 0.00 0.00 2.87
116 117 1.202417 TCCGATGATGCCGAAGAAGAC 60.202 52.381 0.00 0.00 0.00 3.01
117 118 0.848942 CGATGATGCCGAAGAAGACG 59.151 55.000 0.00 0.00 0.00 4.18
118 119 0.579156 GATGATGCCGAAGAAGACGC 59.421 55.000 0.00 0.00 0.00 5.19
119 120 0.811616 ATGATGCCGAAGAAGACGCC 60.812 55.000 0.00 0.00 0.00 5.68
120 121 1.447838 GATGCCGAAGAAGACGCCA 60.448 57.895 0.00 0.00 0.00 5.69
121 122 1.003839 ATGCCGAAGAAGACGCCAA 60.004 52.632 0.00 0.00 0.00 4.52
122 123 0.605319 ATGCCGAAGAAGACGCCAAA 60.605 50.000 0.00 0.00 0.00 3.28
123 124 1.227999 TGCCGAAGAAGACGCCAAAG 61.228 55.000 0.00 0.00 0.00 2.77
124 125 1.912371 GCCGAAGAAGACGCCAAAGG 61.912 60.000 0.00 0.00 0.00 3.11
125 126 1.298859 CCGAAGAAGACGCCAAAGGG 61.299 60.000 0.00 0.00 37.18 3.95
135 136 3.373565 CCAAAGGGCAAGTCGGGC 61.374 66.667 0.00 0.00 0.00 6.13
136 137 2.282462 CAAAGGGCAAGTCGGGCT 60.282 61.111 0.00 0.00 0.00 5.19
137 138 1.903404 CAAAGGGCAAGTCGGGCTT 60.903 57.895 0.00 0.00 38.08 4.35
138 139 1.603739 AAAGGGCAAGTCGGGCTTC 60.604 57.895 0.00 0.00 34.69 3.86
139 140 2.069165 AAAGGGCAAGTCGGGCTTCT 62.069 55.000 0.00 0.00 34.69 2.85
140 141 2.034221 GGGCAAGTCGGGCTTCTT 59.966 61.111 0.00 0.00 34.69 2.52
141 142 2.041115 GGGCAAGTCGGGCTTCTTC 61.041 63.158 0.00 0.00 34.69 2.87
142 143 2.391389 GGCAAGTCGGGCTTCTTCG 61.391 63.158 0.00 0.00 34.69 3.79
143 144 2.391389 GCAAGTCGGGCTTCTTCGG 61.391 63.158 0.00 0.00 34.69 4.30
144 145 2.047179 AAGTCGGGCTTCTTCGGC 60.047 61.111 0.00 0.00 30.06 5.54
145 146 3.934391 AAGTCGGGCTTCTTCGGCG 62.934 63.158 0.00 0.00 36.00 6.46
146 147 4.736896 GTCGGGCTTCTTCGGCGT 62.737 66.667 6.85 0.00 0.00 5.68
147 148 4.735132 TCGGGCTTCTTCGGCGTG 62.735 66.667 6.85 1.06 0.00 5.34
148 149 4.735132 CGGGCTTCTTCGGCGTGA 62.735 66.667 6.85 3.83 0.00 4.35
149 150 2.815647 GGGCTTCTTCGGCGTGAG 60.816 66.667 6.85 6.75 0.00 3.51
150 151 2.815647 GGCTTCTTCGGCGTGAGG 60.816 66.667 6.85 8.50 0.00 3.86
167 168 2.987125 GCAGAAGCCCTCCGGTAA 59.013 61.111 0.00 0.00 33.58 2.85
168 169 1.449778 GCAGAAGCCCTCCGGTAAC 60.450 63.158 0.00 0.00 33.58 2.50
169 170 1.900545 GCAGAAGCCCTCCGGTAACT 61.901 60.000 0.00 0.00 33.58 2.24
170 171 0.613777 CAGAAGCCCTCCGGTAACTT 59.386 55.000 0.00 1.01 0.00 2.66
171 172 0.903236 AGAAGCCCTCCGGTAACTTC 59.097 55.000 16.28 16.28 37.58 3.01
172 173 0.459759 GAAGCCCTCCGGTAACTTCG 60.460 60.000 0.00 0.00 0.00 3.79
180 181 3.715854 CGGTAACTTCGGAGTGGAG 57.284 57.895 0.00 0.00 35.91 3.86
181 182 0.886563 CGGTAACTTCGGAGTGGAGT 59.113 55.000 0.00 0.00 35.91 3.85
182 183 1.271656 CGGTAACTTCGGAGTGGAGTT 59.728 52.381 0.00 0.00 35.91 3.01
183 184 2.670509 CGGTAACTTCGGAGTGGAGTTC 60.671 54.545 0.00 0.00 35.91 3.01
184 185 2.561858 GGTAACTTCGGAGTGGAGTTCT 59.438 50.000 0.00 0.00 35.91 3.01
185 186 3.367190 GGTAACTTCGGAGTGGAGTTCTC 60.367 52.174 0.00 0.00 35.91 2.87
186 187 1.258676 ACTTCGGAGTGGAGTTCTCC 58.741 55.000 11.53 11.53 45.56 3.71
190 191 3.516578 GGAGTGGAGTTCTCCGTTG 57.483 57.895 13.27 0.00 41.36 4.10
191 192 0.670854 GGAGTGGAGTTCTCCGTTGC 60.671 60.000 13.27 6.34 41.36 4.17
192 193 0.670854 GAGTGGAGTTCTCCGTTGCC 60.671 60.000 13.27 0.00 0.00 4.52
193 194 2.027625 GTGGAGTTCTCCGTTGCCG 61.028 63.158 13.27 0.00 0.00 5.69
209 210 4.096003 CGGGAGGCGTTGGTGGAT 62.096 66.667 0.00 0.00 0.00 3.41
210 211 2.124695 GGGAGGCGTTGGTGGATC 60.125 66.667 0.00 0.00 0.00 3.36
213 214 3.310860 GAGGCGTTGGTGGATCGGT 62.311 63.158 0.00 0.00 0.00 4.69
481 482 1.277557 GAGCAGAAGAAGAAGGAGGCA 59.722 52.381 0.00 0.00 0.00 4.75
534 535 2.043227 GATCCCCATCGAGTCCTCTTT 58.957 52.381 0.00 0.00 0.00 2.52
548 549 1.551452 CTCTTTCGAGGAGGACTGGT 58.449 55.000 8.91 0.00 33.51 4.00
558 559 2.158234 AGGAGGACTGGTCAGACTTCTT 60.158 50.000 4.84 0.00 31.97 2.52
560 561 2.894126 GAGGACTGGTCAGACTTCTTGA 59.106 50.000 4.84 0.00 0.00 3.02
562 563 3.323403 AGGACTGGTCAGACTTCTTGAAG 59.677 47.826 8.65 8.65 0.00 3.02
804 819 5.337813 GCTCTTTTGGACCATCAATTTGGAT 60.338 40.000 3.10 0.00 39.25 3.41
844 859 3.768468 TTTTTCGAAGCTCCAAAACGT 57.232 38.095 0.00 0.00 0.00 3.99
882 897 8.141268 GTCCAAATTTTACATCTCCAGTTTTGA 58.859 33.333 0.00 0.00 0.00 2.69
909 924 8.356657 ACCGTCAAATTTTGAACAATCTATTGA 58.643 29.630 13.21 0.00 42.15 2.57
963 978 1.982073 GACTCGGATTTTGGGCTGCG 61.982 60.000 0.00 0.00 0.00 5.18
1010 1031 1.841663 GCACGCACCATGTTCTTCGT 61.842 55.000 0.00 0.00 0.00 3.85
1364 1400 4.699522 GCCGCCCGTGGAAGAGTT 62.700 66.667 0.00 0.00 0.00 3.01
1443 1479 1.080772 CCTCGTGCTGCTACGTGAA 60.081 57.895 20.01 6.39 44.06 3.18
1458 1497 1.667830 TGAAACGAGGCTTGAGGCG 60.668 57.895 9.20 0.00 46.23 5.52
1461 1500 2.788191 AAACGAGGCTTGAGGCGGAG 62.788 60.000 9.20 0.00 46.23 4.63
2212 2262 8.782533 CAAGTTTGTCTTGTAAATTGTACTCC 57.217 34.615 0.00 0.00 45.89 3.85
2213 2263 7.506328 AGTTTGTCTTGTAAATTGTACTCCC 57.494 36.000 0.00 0.00 0.00 4.30
2214 2264 7.287810 AGTTTGTCTTGTAAATTGTACTCCCT 58.712 34.615 0.00 0.00 0.00 4.20
2215 2265 7.444487 AGTTTGTCTTGTAAATTGTACTCCCTC 59.556 37.037 0.00 0.00 0.00 4.30
2216 2266 5.801380 TGTCTTGTAAATTGTACTCCCTCC 58.199 41.667 0.00 0.00 0.00 4.30
2217 2267 4.868734 GTCTTGTAAATTGTACTCCCTCCG 59.131 45.833 0.00 0.00 0.00 4.63
2218 2268 4.529377 TCTTGTAAATTGTACTCCCTCCGT 59.471 41.667 0.00 0.00 0.00 4.69
2219 2269 4.895668 TGTAAATTGTACTCCCTCCGTT 57.104 40.909 0.00 0.00 0.00 4.44
2220 2270 4.824289 TGTAAATTGTACTCCCTCCGTTC 58.176 43.478 0.00 0.00 0.00 3.95
2221 2271 3.345508 AAATTGTACTCCCTCCGTTCC 57.654 47.619 0.00 0.00 0.00 3.62
2222 2272 2.249309 ATTGTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
2223 2273 2.905415 TTGTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
2224 2274 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2225 2275 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2226 2276 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2227 2277 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2228 2278 4.646492 TGTACTCCCTCCGTTCCTAAATAC 59.354 45.833 0.00 0.00 0.00 1.89
2229 2279 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
2230 2280 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
2231 2281 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
2232 2282 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
2233 2283 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
2234 2284 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
2235 2285 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2236 2286 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2237 2287 6.653740 CCTCCGTTCCTAAATACTTGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
2238 2288 7.174426 CCTCCGTTCCTAAATACTTGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
2239 2289 9.211485 CTCCGTTCCTAAATACTTGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
2240 2290 9.211485 TCCGTTCCTAAATACTTGTCTTTTTAG 57.789 33.333 0.00 0.00 33.47 1.85
2241 2291 8.448615 CCGTTCCTAAATACTTGTCTTTTTAGG 58.551 37.037 12.11 12.11 46.30 2.69
2242 2292 8.996271 CGTTCCTAAATACTTGTCTTTTTAGGT 58.004 33.333 15.98 0.00 45.63 3.08
2252 2302 8.441312 ACTTGTCTTTTTAGGTATTTCAACGA 57.559 30.769 0.00 0.00 0.00 3.85
2253 2303 8.557029 ACTTGTCTTTTTAGGTATTTCAACGAG 58.443 33.333 0.00 0.00 0.00 4.18
2254 2304 8.441312 TTGTCTTTTTAGGTATTTCAACGAGT 57.559 30.769 0.00 0.00 0.00 4.18
2255 2305 7.857569 TGTCTTTTTAGGTATTTCAACGAGTG 58.142 34.615 0.00 0.00 0.00 3.51
2256 2306 7.711772 TGTCTTTTTAGGTATTTCAACGAGTGA 59.288 33.333 0.00 0.00 0.00 3.41
2257 2307 8.008279 GTCTTTTTAGGTATTTCAACGAGTGAC 58.992 37.037 0.00 0.00 35.39 3.67
2258 2308 7.929785 TCTTTTTAGGTATTTCAACGAGTGACT 59.070 33.333 0.00 0.00 35.39 3.41
2259 2309 9.199982 CTTTTTAGGTATTTCAACGAGTGACTA 57.800 33.333 0.00 0.00 35.39 2.59
2260 2310 8.524870 TTTTAGGTATTTCAACGAGTGACTAC 57.475 34.615 0.00 0.00 35.39 2.73
2261 2311 5.717078 AGGTATTTCAACGAGTGACTACA 57.283 39.130 0.00 0.00 35.39 2.74
2262 2312 6.282199 AGGTATTTCAACGAGTGACTACAT 57.718 37.500 0.00 0.00 35.39 2.29
2263 2313 7.400599 AGGTATTTCAACGAGTGACTACATA 57.599 36.000 0.00 0.00 35.39 2.29
2264 2314 7.256286 AGGTATTTCAACGAGTGACTACATAC 58.744 38.462 0.00 0.00 35.39 2.39
2265 2315 6.195983 GGTATTTCAACGAGTGACTACATACG 59.804 42.308 0.00 0.00 35.39 3.06
2266 2316 3.752412 TCAACGAGTGACTACATACGG 57.248 47.619 0.00 0.00 34.15 4.02
2267 2317 3.337358 TCAACGAGTGACTACATACGGA 58.663 45.455 0.00 0.00 34.15 4.69
2268 2318 3.373130 TCAACGAGTGACTACATACGGAG 59.627 47.826 0.00 0.00 34.15 4.63
2269 2319 6.543089 TTCAACGAGTGACTACATACGGAGT 61.543 44.000 0.00 0.00 39.84 3.85
2270 2320 7.290964 TTCAACGAGTGACTACATACGGAGTA 61.291 42.308 0.00 0.00 41.66 2.59
2271 2321 8.695575 TTCAACGAGTGACTACATACGGAGTAA 61.696 40.741 0.00 0.00 41.03 2.24
2289 2339 8.915036 ACGGAGTAAAATGAGTGAATCTATACT 58.085 33.333 0.00 0.00 41.94 2.12
2290 2340 9.400638 CGGAGTAAAATGAGTGAATCTATACTC 57.599 37.037 0.00 0.00 42.77 2.59
2324 2374 9.533831 TGTCTACATACATCCATATGTGATAGT 57.466 33.333 8.36 7.78 45.99 2.12
2326 2376 9.753674 TCTACATACATCCATATGTGATAGTCA 57.246 33.333 8.36 0.00 45.99 3.41
2333 2383 9.631257 ACATCCATATGTGATAGTCATTTGAAA 57.369 29.630 1.24 0.00 44.79 2.69
2336 2386 8.570488 TCCATATGTGATAGTCATTTGAAATGC 58.430 33.333 12.86 8.33 0.00 3.56
2337 2387 7.811236 CCATATGTGATAGTCATTTGAAATGCC 59.189 37.037 12.86 1.61 0.00 4.40
2338 2388 8.573885 CATATGTGATAGTCATTTGAAATGCCT 58.426 33.333 12.86 9.73 0.00 4.75
2339 2389 9.797642 ATATGTGATAGTCATTTGAAATGCCTA 57.202 29.630 10.59 10.59 0.00 3.93
2340 2390 7.558161 TGTGATAGTCATTTGAAATGCCTAG 57.442 36.000 13.20 0.00 0.00 3.02
2341 2391 7.337938 TGTGATAGTCATTTGAAATGCCTAGA 58.662 34.615 13.20 1.78 0.00 2.43
2342 2392 7.828717 TGTGATAGTCATTTGAAATGCCTAGAA 59.171 33.333 13.20 2.99 0.00 2.10
2343 2393 8.677300 GTGATAGTCATTTGAAATGCCTAGAAA 58.323 33.333 13.20 0.91 0.00 2.52
2344 2394 8.896744 TGATAGTCATTTGAAATGCCTAGAAAG 58.103 33.333 13.20 0.00 0.00 2.62
2345 2395 9.113838 GATAGTCATTTGAAATGCCTAGAAAGA 57.886 33.333 13.20 0.00 0.00 2.52
2346 2396 7.150783 AGTCATTTGAAATGCCTAGAAAGAC 57.849 36.000 12.86 3.23 0.00 3.01
2347 2397 6.716628 AGTCATTTGAAATGCCTAGAAAGACA 59.283 34.615 12.86 0.00 0.00 3.41
2348 2398 7.231317 AGTCATTTGAAATGCCTAGAAAGACAA 59.769 33.333 12.86 0.00 0.00 3.18
2349 2399 7.540055 GTCATTTGAAATGCCTAGAAAGACAAG 59.460 37.037 12.86 0.00 0.00 3.16
2350 2400 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
2351 2401 8.514594 CATTTGAAATGCCTAGAAAGACAAGTA 58.485 33.333 4.82 0.00 0.00 2.24
2352 2402 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
2353 2403 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
2354 2404 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
2355 2405 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
2357 2407 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
2358 2408 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
2359 2409 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
2360 2410 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
2361 2411 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
2362 2412 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
2363 2413 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
2364 2414 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
2365 2415 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2366 2416 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2367 2417 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2565 2643 7.028361 GTCACAAACAGAGGTGTATAGTACTC 58.972 42.308 0.00 0.00 35.08 2.59
2566 2644 6.152323 TCACAAACAGAGGTGTATAGTACTCC 59.848 42.308 0.00 0.00 41.45 3.85
2567 2645 5.421374 ACAAACAGAGGTGTATAGTACTCCC 59.579 44.000 0.00 0.00 41.94 4.30
2568 2646 5.469210 AACAGAGGTGTATAGTACTCCCT 57.531 43.478 0.00 0.00 41.94 4.20
2569 2647 5.051409 ACAGAGGTGTATAGTACTCCCTC 57.949 47.826 0.00 7.88 41.94 4.30
2570 2648 4.141205 ACAGAGGTGTATAGTACTCCCTCC 60.141 50.000 15.98 9.28 42.95 4.30
2571 2649 4.105057 CAGAGGTGTATAGTACTCCCTCCT 59.895 50.000 15.98 12.63 42.95 3.69
2572 2650 5.310068 CAGAGGTGTATAGTACTCCCTCCTA 59.690 48.000 15.98 0.00 42.95 2.94
2573 2651 5.548836 AGAGGTGTATAGTACTCCCTCCTAG 59.451 48.000 15.98 0.00 42.95 3.02
2574 2652 5.484454 AGGTGTATAGTACTCCCTCCTAGA 58.516 45.833 0.00 0.00 41.94 2.43
2575 2653 6.099833 AGGTGTATAGTACTCCCTCCTAGAT 58.900 44.000 0.00 0.00 41.94 1.98
2576 2654 7.262394 AGGTGTATAGTACTCCCTCCTAGATA 58.738 42.308 0.00 0.00 41.94 1.98
2577 2655 7.182568 AGGTGTATAGTACTCCCTCCTAGATAC 59.817 44.444 0.00 0.00 41.94 2.24
2578 2656 7.037730 GGTGTATAGTACTCCCTCCTAGATACA 60.038 44.444 0.00 1.91 36.57 2.29
2579 2657 8.550585 GTGTATAGTACTCCCTCCTAGATACAT 58.449 40.741 0.00 0.00 0.00 2.29
2580 2658 8.770322 TGTATAGTACTCCCTCCTAGATACATC 58.230 40.741 0.00 0.00 0.00 3.06
2581 2659 5.523883 AGTACTCCCTCCTAGATACATCC 57.476 47.826 0.00 0.00 0.00 3.51
2582 2660 3.443145 ACTCCCTCCTAGATACATCCG 57.557 52.381 0.00 0.00 0.00 4.18
2583 2661 2.717515 ACTCCCTCCTAGATACATCCGT 59.282 50.000 0.00 0.00 0.00 4.69
2584 2662 3.140519 ACTCCCTCCTAGATACATCCGTT 59.859 47.826 0.00 0.00 0.00 4.44
2585 2663 4.153411 CTCCCTCCTAGATACATCCGTTT 58.847 47.826 0.00 0.00 0.00 3.60
2586 2664 5.163012 ACTCCCTCCTAGATACATCCGTTTA 60.163 44.000 0.00 0.00 0.00 2.01
2587 2665 5.708544 TCCCTCCTAGATACATCCGTTTAA 58.291 41.667 0.00 0.00 0.00 1.52
2588 2666 5.773680 TCCCTCCTAGATACATCCGTTTAAG 59.226 44.000 0.00 0.00 0.00 1.85
2589 2667 5.539193 CCCTCCTAGATACATCCGTTTAAGT 59.461 44.000 0.00 0.00 0.00 2.24
2590 2668 6.448006 CCTCCTAGATACATCCGTTTAAGTG 58.552 44.000 0.00 0.00 0.00 3.16
2591 2669 6.264744 CCTCCTAGATACATCCGTTTAAGTGA 59.735 42.308 0.00 0.00 0.00 3.41
2592 2670 7.035840 TCCTAGATACATCCGTTTAAGTGAC 57.964 40.000 0.00 0.00 0.00 3.67
2593 2671 6.604396 TCCTAGATACATCCGTTTAAGTGACA 59.396 38.462 0.00 0.00 0.00 3.58
2594 2672 7.123098 TCCTAGATACATCCGTTTAAGTGACAA 59.877 37.037 0.00 0.00 0.00 3.18
2595 2673 7.435488 CCTAGATACATCCGTTTAAGTGACAAG 59.565 40.741 0.00 0.00 0.00 3.16
2596 2674 6.698380 AGATACATCCGTTTAAGTGACAAGT 58.302 36.000 0.00 0.00 0.00 3.16
2597 2675 7.833786 AGATACATCCGTTTAAGTGACAAGTA 58.166 34.615 0.00 0.00 0.00 2.24
2598 2676 8.308931 AGATACATCCGTTTAAGTGACAAGTAA 58.691 33.333 0.00 0.00 0.00 2.24
2599 2677 9.095065 GATACATCCGTTTAAGTGACAAGTAAT 57.905 33.333 0.00 0.00 0.00 1.89
2602 2680 8.879759 ACATCCGTTTAAGTGACAAGTAATATG 58.120 33.333 0.00 0.00 0.00 1.78
2603 2681 7.837202 TCCGTTTAAGTGACAAGTAATATGG 57.163 36.000 0.00 0.00 0.00 2.74
2604 2682 7.613585 TCCGTTTAAGTGACAAGTAATATGGA 58.386 34.615 0.00 0.00 0.00 3.41
2605 2683 8.262227 TCCGTTTAAGTGACAAGTAATATGGAT 58.738 33.333 0.00 0.00 0.00 3.41
2606 2684 8.548721 CCGTTTAAGTGACAAGTAATATGGATC 58.451 37.037 0.00 0.00 0.00 3.36
2607 2685 8.266682 CGTTTAAGTGACAAGTAATATGGATCG 58.733 37.037 0.00 0.00 0.00 3.69
2608 2686 9.309516 GTTTAAGTGACAAGTAATATGGATCGA 57.690 33.333 0.00 0.00 0.00 3.59
2609 2687 9.878667 TTTAAGTGACAAGTAATATGGATCGAA 57.121 29.630 0.00 0.00 0.00 3.71
2610 2688 9.529325 TTAAGTGACAAGTAATATGGATCGAAG 57.471 33.333 0.00 0.00 0.00 3.79
2611 2689 6.516718 AGTGACAAGTAATATGGATCGAAGG 58.483 40.000 0.00 0.00 0.00 3.46
2612 2690 5.696724 GTGACAAGTAATATGGATCGAAGGG 59.303 44.000 0.00 0.00 0.00 3.95
2632 2710 3.251004 GGGGTATATTGCAGAAAGAAGCG 59.749 47.826 0.00 0.00 0.00 4.68
2698 2776 5.700832 GGACATCGGATTTCATAGTATTGCA 59.299 40.000 6.49 0.00 0.00 4.08
2701 2779 7.417612 ACATCGGATTTCATAGTATTGCAAAC 58.582 34.615 1.71 3.36 0.00 2.93
2809 2887 1.252175 GCAGTCACAGGTGAGAGAGA 58.748 55.000 1.66 0.00 40.75 3.10
2811 2889 1.818060 CAGTCACAGGTGAGAGAGAGG 59.182 57.143 1.66 0.00 40.75 3.69
2812 2890 1.707989 AGTCACAGGTGAGAGAGAGGA 59.292 52.381 1.66 0.00 40.75 3.71
2813 2891 2.311542 AGTCACAGGTGAGAGAGAGGAT 59.688 50.000 1.66 0.00 40.75 3.24
2814 2892 3.096092 GTCACAGGTGAGAGAGAGGATT 58.904 50.000 1.66 0.00 40.75 3.01
2816 2894 3.513119 TCACAGGTGAGAGAGAGGATTTG 59.487 47.826 0.00 0.00 34.14 2.32
2817 2895 2.235898 ACAGGTGAGAGAGAGGATTTGC 59.764 50.000 0.00 0.00 0.00 3.68
2818 2896 2.235650 CAGGTGAGAGAGAGGATTTGCA 59.764 50.000 0.00 0.00 0.00 4.08
2819 2897 2.909006 AGGTGAGAGAGAGGATTTGCAA 59.091 45.455 0.00 0.00 0.00 4.08
2821 2899 3.688673 GGTGAGAGAGAGGATTTGCAAAG 59.311 47.826 18.19 0.00 0.00 2.77
2822 2900 4.322567 GTGAGAGAGAGGATTTGCAAAGT 58.677 43.478 18.19 4.60 0.00 2.66
2823 2901 4.153835 GTGAGAGAGAGGATTTGCAAAGTG 59.846 45.833 18.19 0.00 0.00 3.16
2824 2902 3.080319 AGAGAGAGGATTTGCAAAGTGC 58.920 45.455 18.19 10.81 45.29 4.40
2841 2919 0.603707 TGCAGGAGCGGTTTCAGAAG 60.604 55.000 0.00 0.00 46.23 2.85
2846 2924 1.002087 GGAGCGGTTTCAGAAGAAGGA 59.998 52.381 0.00 0.00 34.71 3.36
2849 2927 3.753797 GAGCGGTTTCAGAAGAAGGAAAT 59.246 43.478 0.00 0.00 35.66 2.17
2850 2928 4.145052 AGCGGTTTCAGAAGAAGGAAATT 58.855 39.130 0.00 0.00 35.66 1.82
2889 2967 7.098477 TGAATGAGGCTCAAACCAAAATATTG 58.902 34.615 22.84 0.00 36.25 1.90
2907 2988 6.690194 ATATTGCATCAAACTGGAAGAGAC 57.310 37.500 0.00 0.00 37.43 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.463879 CTGAGCTGAGGGGCGGTG 62.464 72.222 0.00 0.00 37.29 4.94
17 18 4.106925 GTGGGGCTGAGCTGAGGG 62.107 72.222 3.72 0.00 0.00 4.30
18 19 4.106925 GGTGGGGCTGAGCTGAGG 62.107 72.222 3.72 0.00 0.00 3.86
19 20 4.106925 GGGTGGGGCTGAGCTGAG 62.107 72.222 3.72 0.00 0.00 3.35
71 72 4.803426 GAGAGTGGTGGAGCGGCG 62.803 72.222 0.51 0.51 0.00 6.46
72 73 3.695606 TGAGAGTGGTGGAGCGGC 61.696 66.667 0.00 0.00 0.00 6.53
73 74 2.262915 GTGAGAGTGGTGGAGCGG 59.737 66.667 0.00 0.00 0.00 5.52
74 75 2.262915 GGTGAGAGTGGTGGAGCG 59.737 66.667 0.00 0.00 0.00 5.03
75 76 2.262915 CGGTGAGAGTGGTGGAGC 59.737 66.667 0.00 0.00 0.00 4.70
76 77 2.219325 GAGCGGTGAGAGTGGTGGAG 62.219 65.000 0.00 0.00 0.00 3.86
77 78 2.203640 AGCGGTGAGAGTGGTGGA 60.204 61.111 0.00 0.00 0.00 4.02
78 79 2.219325 GAGAGCGGTGAGAGTGGTGG 62.219 65.000 0.00 0.00 0.00 4.61
79 80 1.214062 GAGAGCGGTGAGAGTGGTG 59.786 63.158 0.00 0.00 0.00 4.17
80 81 1.979693 GGAGAGCGGTGAGAGTGGT 60.980 63.158 0.00 0.00 0.00 4.16
81 82 2.888863 GGAGAGCGGTGAGAGTGG 59.111 66.667 0.00 0.00 0.00 4.00
82 83 1.380403 ATCGGAGAGCGGTGAGAGTG 61.380 60.000 0.00 0.00 43.63 3.51
83 84 1.077357 ATCGGAGAGCGGTGAGAGT 60.077 57.895 0.00 0.00 43.63 3.24
84 85 1.098129 TCATCGGAGAGCGGTGAGAG 61.098 60.000 0.00 0.00 43.63 3.20
85 86 0.466372 ATCATCGGAGAGCGGTGAGA 60.466 55.000 0.00 0.00 43.63 3.27
86 87 0.318529 CATCATCGGAGAGCGGTGAG 60.319 60.000 0.00 0.00 43.63 3.51
87 88 1.735973 CATCATCGGAGAGCGGTGA 59.264 57.895 0.00 0.00 43.63 4.02
88 89 1.953138 GCATCATCGGAGAGCGGTG 60.953 63.158 0.00 0.00 43.63 4.94
89 90 2.419198 GCATCATCGGAGAGCGGT 59.581 61.111 0.00 0.00 43.63 5.68
90 91 2.356793 GGCATCATCGGAGAGCGG 60.357 66.667 0.00 0.00 43.63 5.52
91 92 2.683820 TTCGGCATCATCGGAGAGCG 62.684 60.000 0.00 0.00 43.63 5.03
92 93 0.943359 CTTCGGCATCATCGGAGAGC 60.943 60.000 0.00 0.00 43.63 4.09
93 94 0.670706 TCTTCGGCATCATCGGAGAG 59.329 55.000 0.00 0.00 43.63 3.20
94 95 1.067669 CTTCTTCGGCATCATCGGAGA 59.932 52.381 0.00 0.00 40.12 3.71
95 96 1.067669 TCTTCTTCGGCATCATCGGAG 59.932 52.381 0.00 0.00 34.74 4.63
96 97 1.111277 TCTTCTTCGGCATCATCGGA 58.889 50.000 0.00 0.00 0.00 4.55
97 98 1.212616 GTCTTCTTCGGCATCATCGG 58.787 55.000 0.00 0.00 0.00 4.18
98 99 0.848942 CGTCTTCTTCGGCATCATCG 59.151 55.000 0.00 0.00 0.00 3.84
99 100 0.579156 GCGTCTTCTTCGGCATCATC 59.421 55.000 0.00 0.00 0.00 2.92
100 101 2.682893 GCGTCTTCTTCGGCATCAT 58.317 52.632 0.00 0.00 0.00 2.45
101 102 4.185413 GCGTCTTCTTCGGCATCA 57.815 55.556 0.00 0.00 0.00 3.07
106 107 1.298859 CCCTTTGGCGTCTTCTTCGG 61.299 60.000 0.00 0.00 0.00 4.30
107 108 2.162716 CCCTTTGGCGTCTTCTTCG 58.837 57.895 0.00 0.00 0.00 3.79
118 119 3.373565 GCCCGACTTGCCCTTTGG 61.374 66.667 0.00 0.00 0.00 3.28
119 120 1.866853 GAAGCCCGACTTGCCCTTTG 61.867 60.000 0.00 0.00 39.29 2.77
120 121 1.603739 GAAGCCCGACTTGCCCTTT 60.604 57.895 0.00 0.00 39.29 3.11
121 122 2.034221 GAAGCCCGACTTGCCCTT 59.966 61.111 0.00 0.00 39.29 3.95
122 123 2.470938 GAAGAAGCCCGACTTGCCCT 62.471 60.000 0.00 0.00 39.29 5.19
123 124 2.034221 AAGAAGCCCGACTTGCCC 59.966 61.111 0.00 0.00 39.29 5.36
124 125 2.391389 CGAAGAAGCCCGACTTGCC 61.391 63.158 0.00 0.00 39.29 4.52
125 126 2.391389 CCGAAGAAGCCCGACTTGC 61.391 63.158 0.00 0.00 39.29 4.01
126 127 2.391389 GCCGAAGAAGCCCGACTTG 61.391 63.158 0.00 0.00 39.29 3.16
127 128 2.047179 GCCGAAGAAGCCCGACTT 60.047 61.111 0.00 0.00 42.98 3.01
128 129 4.436998 CGCCGAAGAAGCCCGACT 62.437 66.667 0.00 0.00 0.00 4.18
129 130 4.736896 ACGCCGAAGAAGCCCGAC 62.737 66.667 0.00 0.00 0.00 4.79
130 131 4.735132 CACGCCGAAGAAGCCCGA 62.735 66.667 0.00 0.00 0.00 5.14
131 132 4.735132 TCACGCCGAAGAAGCCCG 62.735 66.667 0.00 0.00 0.00 6.13
132 133 2.815647 CTCACGCCGAAGAAGCCC 60.816 66.667 0.00 0.00 0.00 5.19
133 134 2.815647 CCTCACGCCGAAGAAGCC 60.816 66.667 0.00 0.00 0.00 4.35
134 135 3.491652 GCCTCACGCCGAAGAAGC 61.492 66.667 0.00 0.00 0.00 3.86
135 136 2.048222 TGCCTCACGCCGAAGAAG 60.048 61.111 0.00 0.00 36.24 2.85
136 137 2.048222 CTGCCTCACGCCGAAGAA 60.048 61.111 0.00 0.00 36.24 2.52
137 138 2.570284 TTCTGCCTCACGCCGAAGA 61.570 57.895 0.00 0.00 35.97 2.87
138 139 2.048222 TTCTGCCTCACGCCGAAG 60.048 61.111 0.00 0.00 35.97 3.79
139 140 2.048222 CTTCTGCCTCACGCCGAA 60.048 61.111 0.00 0.00 38.25 4.30
140 141 4.742201 GCTTCTGCCTCACGCCGA 62.742 66.667 0.00 0.00 36.24 5.54
162 163 0.886563 ACTCCACTCCGAAGTTACCG 59.113 55.000 0.00 0.00 31.71 4.02
163 164 2.561858 AGAACTCCACTCCGAAGTTACC 59.438 50.000 0.00 0.00 33.54 2.85
164 165 3.835779 GAGAACTCCACTCCGAAGTTAC 58.164 50.000 0.00 0.00 33.54 2.50
192 193 4.096003 ATCCACCAACGCCTCCCG 62.096 66.667 0.00 0.00 44.21 5.14
193 194 2.124695 GATCCACCAACGCCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
194 195 2.511600 CGATCCACCAACGCCTCC 60.512 66.667 0.00 0.00 0.00 4.30
195 196 2.511600 CCGATCCACCAACGCCTC 60.512 66.667 0.00 0.00 0.00 4.70
196 197 3.319198 ACCGATCCACCAACGCCT 61.319 61.111 0.00 0.00 0.00 5.52
197 198 3.124921 CACCGATCCACCAACGCC 61.125 66.667 0.00 0.00 0.00 5.68
198 199 3.124921 CCACCGATCCACCAACGC 61.125 66.667 0.00 0.00 0.00 4.84
199 200 2.032634 CACCACCGATCCACCAACG 61.033 63.158 0.00 0.00 0.00 4.10
200 201 1.072505 ACACCACCGATCCACCAAC 59.927 57.895 0.00 0.00 0.00 3.77
201 202 1.072332 CACACCACCGATCCACCAA 59.928 57.895 0.00 0.00 0.00 3.67
202 203 2.747022 CACACCACCGATCCACCA 59.253 61.111 0.00 0.00 0.00 4.17
203 204 2.046314 CCACACCACCGATCCACC 60.046 66.667 0.00 0.00 0.00 4.61
204 205 2.746277 GCCACACCACCGATCCAC 60.746 66.667 0.00 0.00 0.00 4.02
205 206 4.386951 CGCCACACCACCGATCCA 62.387 66.667 0.00 0.00 0.00 3.41
206 207 4.388499 ACGCCACACCACCGATCC 62.388 66.667 0.00 0.00 0.00 3.36
207 208 3.118454 CACGCCACACCACCGATC 61.118 66.667 0.00 0.00 0.00 3.69
240 241 0.322008 CTCTGGGAAGTTGAGGTGCC 60.322 60.000 0.00 0.00 0.00 5.01
303 304 2.042464 TCGGGATCTCCTTCATCTTGG 58.958 52.381 0.00 0.00 35.95 3.61
477 478 0.610687 CTCGTCCTCCTTCTTTGCCT 59.389 55.000 0.00 0.00 0.00 4.75
481 482 1.889530 CGGCCTCGTCCTCCTTCTTT 61.890 60.000 0.00 0.00 0.00 2.52
534 535 0.322636 GTCTGACCAGTCCTCCTCGA 60.323 60.000 0.00 0.00 0.00 4.04
548 549 3.169099 CCTCCTCCTTCAAGAAGTCTGA 58.831 50.000 8.83 1.85 36.72 3.27
558 559 1.706575 CCCTCCTCCTCCTCCTTCA 59.293 63.158 0.00 0.00 0.00 3.02
560 561 1.869452 ACCCCTCCTCCTCCTCCTT 60.869 63.158 0.00 0.00 0.00 3.36
562 563 2.041405 CACCCCTCCTCCTCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
853 868 4.912586 TGGAGATGTAAAATTTGGACCGA 58.087 39.130 0.00 0.00 0.00 4.69
882 897 8.977505 CAATAGATTGTTCAAAATTTGACGGTT 58.022 29.630 8.06 0.00 39.87 4.44
1364 1400 1.375908 GCATCCTCCAACTCACGCA 60.376 57.895 0.00 0.00 0.00 5.24
1443 1479 3.302347 CTCCGCCTCAAGCCTCGTT 62.302 63.158 0.00 0.00 38.78 3.85
1458 1497 2.437343 CGTCTTCGCGTTGCTCTCC 61.437 63.158 5.77 0.00 0.00 3.71
1461 1500 4.135493 GCCGTCTTCGCGTTGCTC 62.135 66.667 5.77 0.00 35.54 4.26
2210 2260 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2211 2261 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2212 2262 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2213 2263 7.668525 AAAAGACAAGTATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
2214 2264 9.211485 CTAAAAAGACAAGTATTTAGGAACGGA 57.789 33.333 0.00 0.00 33.69 4.69
2226 2276 9.545105 TCGTTGAAATACCTAAAAAGACAAGTA 57.455 29.630 0.00 0.00 0.00 2.24
2227 2277 8.441312 TCGTTGAAATACCTAAAAAGACAAGT 57.559 30.769 0.00 0.00 0.00 3.16
2228 2278 8.557029 ACTCGTTGAAATACCTAAAAAGACAAG 58.443 33.333 0.00 0.00 0.00 3.16
2229 2279 8.339714 CACTCGTTGAAATACCTAAAAAGACAA 58.660 33.333 0.00 0.00 0.00 3.18
2230 2280 7.711772 TCACTCGTTGAAATACCTAAAAAGACA 59.288 33.333 0.00 0.00 0.00 3.41
2231 2281 8.008279 GTCACTCGTTGAAATACCTAAAAAGAC 58.992 37.037 0.00 0.00 35.39 3.01
2232 2282 7.929785 AGTCACTCGTTGAAATACCTAAAAAGA 59.070 33.333 0.00 0.00 35.39 2.52
2233 2283 8.084590 AGTCACTCGTTGAAATACCTAAAAAG 57.915 34.615 0.00 0.00 35.39 2.27
2234 2284 8.981647 GTAGTCACTCGTTGAAATACCTAAAAA 58.018 33.333 0.00 0.00 35.39 1.94
2235 2285 8.143193 TGTAGTCACTCGTTGAAATACCTAAAA 58.857 33.333 0.00 0.00 35.39 1.52
2236 2286 7.660112 TGTAGTCACTCGTTGAAATACCTAAA 58.340 34.615 0.00 0.00 35.39 1.85
2237 2287 7.218228 TGTAGTCACTCGTTGAAATACCTAA 57.782 36.000 0.00 0.00 35.39 2.69
2238 2288 6.822667 TGTAGTCACTCGTTGAAATACCTA 57.177 37.500 0.00 0.00 35.39 3.08
2239 2289 5.717078 TGTAGTCACTCGTTGAAATACCT 57.283 39.130 0.00 0.00 35.39 3.08
2240 2290 6.195983 CGTATGTAGTCACTCGTTGAAATACC 59.804 42.308 0.00 0.00 35.39 2.73
2241 2291 6.195983 CCGTATGTAGTCACTCGTTGAAATAC 59.804 42.308 0.00 0.00 35.39 1.89
2242 2292 6.093909 TCCGTATGTAGTCACTCGTTGAAATA 59.906 38.462 0.00 0.00 35.39 1.40
2243 2293 5.100259 CCGTATGTAGTCACTCGTTGAAAT 58.900 41.667 0.00 0.00 35.39 2.17
2244 2294 4.216042 TCCGTATGTAGTCACTCGTTGAAA 59.784 41.667 0.00 0.00 35.39 2.69
2245 2295 3.752747 TCCGTATGTAGTCACTCGTTGAA 59.247 43.478 0.00 0.00 35.39 2.69
2246 2296 3.337358 TCCGTATGTAGTCACTCGTTGA 58.663 45.455 0.00 0.00 0.00 3.18
2247 2297 3.126514 ACTCCGTATGTAGTCACTCGTTG 59.873 47.826 0.00 0.00 0.00 4.10
2248 2298 3.341823 ACTCCGTATGTAGTCACTCGTT 58.658 45.455 0.00 0.00 0.00 3.85
2249 2299 2.983229 ACTCCGTATGTAGTCACTCGT 58.017 47.619 0.00 0.00 0.00 4.18
2250 2300 5.475273 TTTACTCCGTATGTAGTCACTCG 57.525 43.478 0.00 0.00 0.00 4.18
2251 2301 7.478322 TCATTTTACTCCGTATGTAGTCACTC 58.522 38.462 0.00 0.00 0.00 3.51
2252 2302 7.122353 ACTCATTTTACTCCGTATGTAGTCACT 59.878 37.037 0.00 0.00 0.00 3.41
2253 2303 7.220300 CACTCATTTTACTCCGTATGTAGTCAC 59.780 40.741 0.00 0.00 0.00 3.67
2254 2304 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
2255 2305 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
2256 2306 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
2257 2307 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
2258 2308 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
2259 2309 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
2260 2310 9.698309 ATAGATTCACTCATTTTACTCCGTATG 57.302 33.333 0.00 0.00 0.00 2.39
2263 2313 8.915036 AGTATAGATTCACTCATTTTACTCCGT 58.085 33.333 0.00 0.00 0.00 4.69
2264 2314 9.400638 GAGTATAGATTCACTCATTTTACTCCG 57.599 37.037 0.00 0.00 40.74 4.63
2298 2348 9.533831 ACTATCACATATGGATGTATGTAGACA 57.466 33.333 7.80 0.00 44.82 3.41
2300 2350 9.753674 TGACTATCACATATGGATGTATGTAGA 57.246 33.333 7.80 1.99 44.82 2.59
2310 2360 8.570488 GCATTTCAAATGACTATCACATATGGA 58.430 33.333 14.65 2.05 0.00 3.41
2311 2361 7.811236 GGCATTTCAAATGACTATCACATATGG 59.189 37.037 14.65 0.00 0.00 2.74
2312 2362 8.573885 AGGCATTTCAAATGACTATCACATATG 58.426 33.333 17.52 0.00 35.20 1.78
2313 2363 8.701908 AGGCATTTCAAATGACTATCACATAT 57.298 30.769 17.52 0.00 35.20 1.78
2314 2364 9.276590 CTAGGCATTTCAAATGACTATCACATA 57.723 33.333 23.50 4.36 38.80 2.29
2315 2365 7.994911 TCTAGGCATTTCAAATGACTATCACAT 59.005 33.333 23.50 1.77 38.80 3.21
2316 2366 7.337938 TCTAGGCATTTCAAATGACTATCACA 58.662 34.615 23.50 5.75 38.80 3.58
2317 2367 7.792374 TCTAGGCATTTCAAATGACTATCAC 57.208 36.000 23.50 0.15 38.80 3.06
2318 2368 8.806429 TTTCTAGGCATTTCAAATGACTATCA 57.194 30.769 23.50 12.23 38.80 2.15
2319 2369 9.113838 TCTTTCTAGGCATTTCAAATGACTATC 57.886 33.333 23.50 1.52 38.80 2.08
2320 2370 8.897752 GTCTTTCTAGGCATTTCAAATGACTAT 58.102 33.333 23.50 4.64 38.80 2.12
2321 2371 7.882791 TGTCTTTCTAGGCATTTCAAATGACTA 59.117 33.333 22.19 22.19 38.54 2.59
2322 2372 6.716628 TGTCTTTCTAGGCATTTCAAATGACT 59.283 34.615 22.35 22.35 41.04 3.41
2323 2373 6.913170 TGTCTTTCTAGGCATTTCAAATGAC 58.087 36.000 14.65 11.48 29.10 3.06
2324 2374 7.231317 ACTTGTCTTTCTAGGCATTTCAAATGA 59.769 33.333 14.65 0.00 35.56 2.57
2325 2375 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
2326 2376 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
2327 2377 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
2328 2378 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
2329 2379 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
2331 2381 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
2332 2382 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
2333 2383 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
2334 2384 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
2335 2385 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
2336 2386 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
2337 2387 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
2338 2388 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
2339 2389 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
2340 2390 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
2341 2391 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2342 2392 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2343 2393 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
2344 2394 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
2345 2395 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
2346 2396 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
2347 2397 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
2348 2398 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
2349 2399 5.859205 TTACTCCCTCCGTTCCTAAATAC 57.141 43.478 0.00 0.00 0.00 1.89
2350 2400 7.068702 TGTATTACTCCCTCCGTTCCTAAATA 58.931 38.462 0.00 0.00 0.00 1.40
2351 2401 5.901276 TGTATTACTCCCTCCGTTCCTAAAT 59.099 40.000 0.00 0.00 0.00 1.40
2352 2402 5.271598 TGTATTACTCCCTCCGTTCCTAAA 58.728 41.667 0.00 0.00 0.00 1.85
2353 2403 4.870636 TGTATTACTCCCTCCGTTCCTAA 58.129 43.478 0.00 0.00 0.00 2.69
2354 2404 4.166725 TCTGTATTACTCCCTCCGTTCCTA 59.833 45.833 0.00 0.00 0.00 2.94
2355 2405 3.053095 TCTGTATTACTCCCTCCGTTCCT 60.053 47.826 0.00 0.00 0.00 3.36
2356 2406 3.294214 TCTGTATTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
2357 2407 4.341520 ACATCTGTATTACTCCCTCCGTTC 59.658 45.833 0.00 0.00 0.00 3.95
2358 2408 4.287552 ACATCTGTATTACTCCCTCCGTT 58.712 43.478 0.00 0.00 0.00 4.44
2359 2409 3.912248 ACATCTGTATTACTCCCTCCGT 58.088 45.455 0.00 0.00 0.00 4.69
2360 2410 5.048643 CACTACATCTGTATTACTCCCTCCG 60.049 48.000 0.00 0.00 0.00 4.63
2361 2411 5.244178 CCACTACATCTGTATTACTCCCTCC 59.756 48.000 0.00 0.00 0.00 4.30
2362 2412 5.279056 GCCACTACATCTGTATTACTCCCTC 60.279 48.000 0.00 0.00 0.00 4.30
2363 2413 4.589374 GCCACTACATCTGTATTACTCCCT 59.411 45.833 0.00 0.00 0.00 4.20
2364 2414 4.589374 AGCCACTACATCTGTATTACTCCC 59.411 45.833 0.00 0.00 0.00 4.30
2365 2415 5.279056 GGAGCCACTACATCTGTATTACTCC 60.279 48.000 10.53 10.53 33.17 3.85
2366 2416 5.536916 AGGAGCCACTACATCTGTATTACTC 59.463 44.000 0.00 0.00 0.00 2.59
2367 2417 5.459505 AGGAGCCACTACATCTGTATTACT 58.540 41.667 0.00 0.00 0.00 2.24
2490 2543 8.908903 AGTTGGTTATTGAGAAACACAACATTA 58.091 29.630 15.80 0.00 38.75 1.90
2527 2605 6.920817 TCTGTTTGTGACTTATATCTCGTGT 58.079 36.000 0.00 0.00 0.00 4.49
2565 2643 5.539193 ACTTAAACGGATGTATCTAGGAGGG 59.461 44.000 0.00 0.00 0.00 4.30
2566 2644 6.264744 TCACTTAAACGGATGTATCTAGGAGG 59.735 42.308 0.00 0.00 0.00 4.30
2567 2645 7.140048 GTCACTTAAACGGATGTATCTAGGAG 58.860 42.308 0.00 0.00 0.00 3.69
2568 2646 6.604396 TGTCACTTAAACGGATGTATCTAGGA 59.396 38.462 0.00 0.00 0.00 2.94
2569 2647 6.802608 TGTCACTTAAACGGATGTATCTAGG 58.197 40.000 0.00 0.00 0.00 3.02
2570 2648 7.974501 ACTTGTCACTTAAACGGATGTATCTAG 59.025 37.037 0.00 0.00 0.00 2.43
2571 2649 7.833786 ACTTGTCACTTAAACGGATGTATCTA 58.166 34.615 0.00 0.00 0.00 1.98
2572 2650 6.698380 ACTTGTCACTTAAACGGATGTATCT 58.302 36.000 0.00 0.00 0.00 1.98
2573 2651 6.963049 ACTTGTCACTTAAACGGATGTATC 57.037 37.500 0.00 0.00 0.00 2.24
2576 2654 8.879759 CATATTACTTGTCACTTAAACGGATGT 58.120 33.333 0.00 0.00 0.00 3.06
2577 2655 8.335356 CCATATTACTTGTCACTTAAACGGATG 58.665 37.037 0.00 0.00 0.00 3.51
2578 2656 8.262227 TCCATATTACTTGTCACTTAAACGGAT 58.738 33.333 0.00 0.00 0.00 4.18
2579 2657 7.613585 TCCATATTACTTGTCACTTAAACGGA 58.386 34.615 0.00 0.00 0.00 4.69
2580 2658 7.837202 TCCATATTACTTGTCACTTAAACGG 57.163 36.000 0.00 0.00 0.00 4.44
2581 2659 8.266682 CGATCCATATTACTTGTCACTTAAACG 58.733 37.037 0.00 0.00 0.00 3.60
2582 2660 9.309516 TCGATCCATATTACTTGTCACTTAAAC 57.690 33.333 0.00 0.00 0.00 2.01
2583 2661 9.878667 TTCGATCCATATTACTTGTCACTTAAA 57.121 29.630 0.00 0.00 0.00 1.52
2584 2662 9.529325 CTTCGATCCATATTACTTGTCACTTAA 57.471 33.333 0.00 0.00 0.00 1.85
2585 2663 8.141909 CCTTCGATCCATATTACTTGTCACTTA 58.858 37.037 0.00 0.00 0.00 2.24
2586 2664 6.986817 CCTTCGATCCATATTACTTGTCACTT 59.013 38.462 0.00 0.00 0.00 3.16
2587 2665 6.463049 CCCTTCGATCCATATTACTTGTCACT 60.463 42.308 0.00 0.00 0.00 3.41
2588 2666 5.696724 CCCTTCGATCCATATTACTTGTCAC 59.303 44.000 0.00 0.00 0.00 3.67
2589 2667 5.221641 CCCCTTCGATCCATATTACTTGTCA 60.222 44.000 0.00 0.00 0.00 3.58
2590 2668 5.221661 ACCCCTTCGATCCATATTACTTGTC 60.222 44.000 0.00 0.00 0.00 3.18
2591 2669 4.658901 ACCCCTTCGATCCATATTACTTGT 59.341 41.667 0.00 0.00 0.00 3.16
2592 2670 5.228945 ACCCCTTCGATCCATATTACTTG 57.771 43.478 0.00 0.00 0.00 3.16
2593 2671 8.855804 ATATACCCCTTCGATCCATATTACTT 57.144 34.615 0.00 0.00 0.00 2.24
2594 2672 8.705594 CAATATACCCCTTCGATCCATATTACT 58.294 37.037 0.00 0.00 0.00 2.24
2595 2673 7.441458 GCAATATACCCCTTCGATCCATATTAC 59.559 40.741 0.00 0.00 0.00 1.89
2596 2674 7.126573 TGCAATATACCCCTTCGATCCATATTA 59.873 37.037 0.00 0.00 0.00 0.98
2597 2675 6.069673 TGCAATATACCCCTTCGATCCATATT 60.070 38.462 0.00 0.00 0.00 1.28
2598 2676 5.428457 TGCAATATACCCCTTCGATCCATAT 59.572 40.000 0.00 0.00 0.00 1.78
2599 2677 4.780554 TGCAATATACCCCTTCGATCCATA 59.219 41.667 0.00 0.00 0.00 2.74
2600 2678 3.587061 TGCAATATACCCCTTCGATCCAT 59.413 43.478 0.00 0.00 0.00 3.41
2601 2679 2.976185 TGCAATATACCCCTTCGATCCA 59.024 45.455 0.00 0.00 0.00 3.41
2602 2680 3.260884 TCTGCAATATACCCCTTCGATCC 59.739 47.826 0.00 0.00 0.00 3.36
2603 2681 4.537135 TCTGCAATATACCCCTTCGATC 57.463 45.455 0.00 0.00 0.00 3.69
2604 2682 4.974645 TTCTGCAATATACCCCTTCGAT 57.025 40.909 0.00 0.00 0.00 3.59
2605 2683 4.407621 TCTTTCTGCAATATACCCCTTCGA 59.592 41.667 0.00 0.00 0.00 3.71
2606 2684 4.703897 TCTTTCTGCAATATACCCCTTCG 58.296 43.478 0.00 0.00 0.00 3.79
2607 2685 5.009110 GCTTCTTTCTGCAATATACCCCTTC 59.991 44.000 0.00 0.00 0.00 3.46
2608 2686 4.889995 GCTTCTTTCTGCAATATACCCCTT 59.110 41.667 0.00 0.00 0.00 3.95
2609 2687 4.464947 GCTTCTTTCTGCAATATACCCCT 58.535 43.478 0.00 0.00 0.00 4.79
2610 2688 3.251004 CGCTTCTTTCTGCAATATACCCC 59.749 47.826 0.00 0.00 0.00 4.95
2611 2689 3.877508 ACGCTTCTTTCTGCAATATACCC 59.122 43.478 0.00 0.00 0.00 3.69
2612 2690 5.485662 AACGCTTCTTTCTGCAATATACC 57.514 39.130 0.00 0.00 0.00 2.73
2651 2729 0.828022 TGACCGCCGGTTTATCTCAT 59.172 50.000 11.54 0.00 35.25 2.90
2652 2730 0.828022 ATGACCGCCGGTTTATCTCA 59.172 50.000 11.54 2.22 35.25 3.27
2653 2731 1.068741 AGATGACCGCCGGTTTATCTC 59.931 52.381 23.19 11.80 36.13 2.75
2681 2759 6.974622 CCACTGTTTGCAATACTATGAAATCC 59.025 38.462 0.00 0.00 0.00 3.01
2698 2776 0.981183 TATGCCTCGGTCCACTGTTT 59.019 50.000 0.00 0.00 0.00 2.83
2701 2779 1.227380 GCTATGCCTCGGTCCACTG 60.227 63.158 0.00 0.00 0.00 3.66
2816 2894 2.075426 AAACCGCTCCTGCACTTTGC 62.075 55.000 0.00 0.00 45.29 3.68
2817 2895 0.040067 GAAACCGCTCCTGCACTTTG 60.040 55.000 0.00 0.00 39.64 2.77
2818 2896 0.465460 TGAAACCGCTCCTGCACTTT 60.465 50.000 0.00 0.00 39.64 2.66
2819 2897 0.886490 CTGAAACCGCTCCTGCACTT 60.886 55.000 0.00 0.00 39.64 3.16
2821 2899 0.884704 TTCTGAAACCGCTCCTGCAC 60.885 55.000 0.00 0.00 39.64 4.57
2822 2900 0.603707 CTTCTGAAACCGCTCCTGCA 60.604 55.000 0.00 0.00 39.64 4.41
2823 2901 0.320771 TCTTCTGAAACCGCTCCTGC 60.321 55.000 0.00 0.00 0.00 4.85
2824 2902 2.072298 CTTCTTCTGAAACCGCTCCTG 58.928 52.381 0.00 0.00 0.00 3.86
2825 2903 1.002544 CCTTCTTCTGAAACCGCTCCT 59.997 52.381 0.00 0.00 0.00 3.69
2826 2904 1.002087 TCCTTCTTCTGAAACCGCTCC 59.998 52.381 0.00 0.00 0.00 4.70
2827 2905 2.457366 TCCTTCTTCTGAAACCGCTC 57.543 50.000 0.00 0.00 0.00 5.03
2828 2906 2.930826 TTCCTTCTTCTGAAACCGCT 57.069 45.000 0.00 0.00 0.00 5.52
2829 2907 4.505313 AATTTCCTTCTTCTGAAACCGC 57.495 40.909 0.00 0.00 33.64 5.68
2841 2919 9.442047 TTCATGTAGAGAGAGAAAATTTCCTTC 57.558 33.333 1.57 0.95 0.00 3.46
2846 2924 9.393512 CCTCATTCATGTAGAGAGAGAAAATTT 57.606 33.333 11.54 0.00 33.36 1.82
2849 2927 6.155910 AGCCTCATTCATGTAGAGAGAGAAAA 59.844 38.462 11.54 0.00 33.36 2.29
2850 2928 5.660417 AGCCTCATTCATGTAGAGAGAGAAA 59.340 40.000 11.54 0.00 33.36 2.52
2889 2967 3.006247 GGAGTCTCTTCCAGTTTGATGC 58.994 50.000 0.00 0.00 37.20 3.91
2927 3008 9.227777 AGTTCTATTCGGCAGTTTTTAGTATTT 57.772 29.630 0.00 0.00 0.00 1.40
2934 3015 4.395231 GCCTAGTTCTATTCGGCAGTTTTT 59.605 41.667 0.00 0.00 40.41 1.94
2937 3018 2.500098 TGCCTAGTTCTATTCGGCAGTT 59.500 45.455 7.04 0.00 45.08 3.16
2951 3032 6.150140 GTCAAATGAACTCTGAAATGCCTAGT 59.850 38.462 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.