Multiple sequence alignment - TraesCS3D01G370100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G370100 chr3D 100.000 2996 0 0 1 2996 483178426 483175431 0.000000e+00 5533
1 TraesCS3D01G370100 chr3A 93.947 2379 65 29 1 2339 626017634 626015295 0.000000e+00 3522
2 TraesCS3D01G370100 chr3A 89.293 495 36 5 2435 2912 626015297 626014803 3.300000e-169 604
3 TraesCS3D01G370100 chr3B 93.968 2354 88 29 9 2344 646004206 646001889 0.000000e+00 3511
4 TraesCS3D01G370100 chr3B 90.816 490 27 7 2465 2946 646001883 646001404 9.060000e-180 640
5 TraesCS3D01G370100 chr1A 91.204 216 16 2 1072 1287 469309779 469309991 1.050000e-74 291
6 TraesCS3D01G370100 chr1A 89.773 88 9 0 2350 2437 530756572 530756659 2.440000e-21 113
7 TraesCS3D01G370100 chr1D 93.814 194 9 1 1094 1287 370342120 370342310 3.780000e-74 289
8 TraesCS3D01G370100 chr1B 93.814 194 9 1 1094 1287 493857836 493858026 3.780000e-74 289
9 TraesCS3D01G370100 chr1B 94.118 85 5 0 2353 2437 364125417 364125333 2.420000e-26 130
10 TraesCS3D01G370100 chr1B 89.130 92 10 0 2351 2442 645568226 645568317 6.790000e-22 115
11 TraesCS3D01G370100 chr2D 90.909 154 12 2 1109 1261 32763270 32763422 3.910000e-49 206
12 TraesCS3D01G370100 chr2A 90.909 154 12 2 1109 1261 35976015 35976167 3.910000e-49 206
13 TraesCS3D01G370100 chr2A 87.629 97 11 1 2342 2437 473417492 473417588 8.780000e-21 111
14 TraesCS3D01G370100 chr6D 89.441 161 17 0 1101 1261 358326165 358326005 1.410000e-48 204
15 TraesCS3D01G370100 chr6A 89.441 161 17 0 1101 1261 500083784 500083624 1.410000e-48 204
16 TraesCS3D01G370100 chr7D 89.796 98 7 3 2351 2447 195626184 195626089 4.060000e-24 122
17 TraesCS3D01G370100 chr7D 89.773 88 9 0 2352 2439 495319714 495319627 2.440000e-21 113
18 TraesCS3D01G370100 chr7B 90.000 90 8 1 2348 2437 386449762 386449674 6.790000e-22 115
19 TraesCS3D01G370100 chr5D 89.773 88 9 0 2350 2437 122203928 122204015 2.440000e-21 113
20 TraesCS3D01G370100 chr5B 89.773 88 9 0 2350 2437 134923379 134923466 2.440000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G370100 chr3D 483175431 483178426 2995 True 5533.0 5533 100.000 1 2996 1 chr3D.!!$R1 2995
1 TraesCS3D01G370100 chr3A 626014803 626017634 2831 True 2063.0 3522 91.620 1 2912 2 chr3A.!!$R1 2911
2 TraesCS3D01G370100 chr3B 646001404 646004206 2802 True 2075.5 3511 92.392 9 2946 2 chr3B.!!$R1 2937

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
797 832 0.570734 CACACCGCGTAATTAGCTCG 59.429 55.0 4.92 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2451 2506 1.483415 ACCGGAGTGCGGTTATATGTT 59.517 47.619 24.37 0.0 36.12 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 35 0.822164 ACACGTCCCCAGCATACTAC 59.178 55.000 0.00 0.00 0.00 2.73
31 36 1.112113 CACGTCCCCAGCATACTACT 58.888 55.000 0.00 0.00 0.00 2.57
32 37 2.304092 CACGTCCCCAGCATACTACTA 58.696 52.381 0.00 0.00 0.00 1.82
33 38 2.293677 CACGTCCCCAGCATACTACTAG 59.706 54.545 0.00 0.00 0.00 2.57
34 39 1.269998 CGTCCCCAGCATACTACTAGC 59.730 57.143 0.00 0.00 0.00 3.42
35 40 2.599677 GTCCCCAGCATACTACTAGCT 58.400 52.381 0.00 0.00 39.63 3.32
36 41 3.764218 GTCCCCAGCATACTACTAGCTA 58.236 50.000 0.00 0.00 36.73 3.32
45 50 5.650266 AGCATACTACTAGCTACTAGCCATG 59.350 44.000 4.32 10.65 43.77 3.66
65 70 3.197790 CAGCCCACCGAATCGCAG 61.198 66.667 0.00 0.00 0.00 5.18
73 78 0.668535 ACCGAATCGCAGATCATCGA 59.331 50.000 10.90 10.90 45.12 3.59
74 79 1.270826 ACCGAATCGCAGATCATCGAT 59.729 47.619 13.95 13.95 46.03 3.59
75 80 1.916651 CCGAATCGCAGATCATCGATC 59.083 52.381 18.20 12.42 43.67 3.69
80 85 1.462670 TCGCAGATCATCGATCTCTCG 59.537 52.381 14.27 14.27 45.03 4.04
84 89 1.125274 GATCATCGATCTCTCGCGCG 61.125 60.000 26.76 26.76 44.65 6.86
144 149 2.115291 GTGAGCAAATCCCGCCCTC 61.115 63.158 0.00 0.00 0.00 4.30
461 466 0.980231 GCTCTCCCAGACTCCCACAT 60.980 60.000 0.00 0.00 0.00 3.21
539 560 4.481930 TTACATGAAACAGTGAAAGCCG 57.518 40.909 0.00 0.00 0.00 5.52
797 832 0.570734 CACACCGCGTAATTAGCTCG 59.429 55.000 4.92 0.00 0.00 5.03
821 856 2.418746 CCCCGCCGATCCATATAAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
934 969 1.573108 TCAGGTCAATCCCTCTCACC 58.427 55.000 0.00 0.00 36.75 4.02
1593 1635 2.581354 GCCTCCAGCGACATGAGT 59.419 61.111 0.00 0.00 0.00 3.41
1597 1639 1.607801 CTCCAGCGACATGAGTCCCA 61.608 60.000 0.00 0.00 41.87 4.37
1603 1645 4.101448 ACATGAGTCCCAGCGGCC 62.101 66.667 0.00 0.00 0.00 6.13
1645 1687 4.925576 CGAGCCCGGACGGATTCG 62.926 72.222 13.13 15.84 43.02 3.34
1798 1840 1.566018 CTGTTTCGACTCGTTGGGGC 61.566 60.000 0.00 0.00 0.00 5.80
2093 2141 5.912892 TCTTTCAATTTGGTTTGGAGGAAC 58.087 37.500 0.00 0.00 0.00 3.62
2286 2341 9.229784 CATATTCTCATCAGTATTTTGTGCAAC 57.770 33.333 0.00 0.00 37.35 4.17
2321 2376 5.762825 ACATTGTATTGAAGCTGCCTATG 57.237 39.130 0.00 0.00 0.00 2.23
2322 2377 5.439721 ACATTGTATTGAAGCTGCCTATGA 58.560 37.500 0.00 0.00 0.00 2.15
2323 2378 6.066690 ACATTGTATTGAAGCTGCCTATGAT 58.933 36.000 0.00 0.00 0.00 2.45
2340 2395 6.439058 GCCTATGATCCAAATCTAGGAGTAGT 59.561 42.308 11.72 0.00 38.83 2.73
2344 2399 8.964533 ATGATCCAAATCTAGGAGTAGTACAT 57.035 34.615 2.52 0.00 38.83 2.29
2346 2401 9.877222 TGATCCAAATCTAGGAGTAGTACATTA 57.123 33.333 2.52 0.00 38.83 1.90
2357 2412 8.247666 AGGAGTAGTACATTATTTGGTACTCC 57.752 38.462 17.93 17.93 45.15 3.85
2358 2413 7.289549 AGGAGTAGTACATTATTTGGTACTCCC 59.710 40.741 20.28 8.20 45.15 4.30
2359 2414 7.289549 GGAGTAGTACATTATTTGGTACTCCCT 59.710 40.741 16.01 5.93 45.15 4.20
2360 2415 8.247666 AGTAGTACATTATTTGGTACTCCCTC 57.752 38.462 7.64 0.08 45.15 4.30
2361 2416 6.496144 AGTACATTATTTGGTACTCCCTCC 57.504 41.667 0.00 0.00 45.15 4.30
2362 2417 4.417426 ACATTATTTGGTACTCCCTCCG 57.583 45.455 0.00 0.00 0.00 4.63
2363 2418 3.778629 ACATTATTTGGTACTCCCTCCGT 59.221 43.478 0.00 0.00 0.00 4.69
2364 2419 4.964262 ACATTATTTGGTACTCCCTCCGTA 59.036 41.667 0.00 0.00 0.00 4.02
2365 2420 5.426185 ACATTATTTGGTACTCCCTCCGTAA 59.574 40.000 0.00 0.00 0.00 3.18
2366 2421 6.070078 ACATTATTTGGTACTCCCTCCGTAAA 60.070 38.462 0.00 0.00 0.00 2.01
2367 2422 3.967332 TTTGGTACTCCCTCCGTAAAG 57.033 47.619 0.00 0.00 0.00 1.85
2368 2423 2.905415 TGGTACTCCCTCCGTAAAGA 57.095 50.000 0.00 0.00 0.00 2.52
2369 2424 3.173953 TGGTACTCCCTCCGTAAAGAA 57.826 47.619 0.00 0.00 0.00 2.52
2370 2425 3.509442 TGGTACTCCCTCCGTAAAGAAA 58.491 45.455 0.00 0.00 0.00 2.52
2371 2426 4.098894 TGGTACTCCCTCCGTAAAGAAAT 58.901 43.478 0.00 0.00 0.00 2.17
2372 2427 5.271598 TGGTACTCCCTCCGTAAAGAAATA 58.728 41.667 0.00 0.00 0.00 1.40
2373 2428 5.901276 TGGTACTCCCTCCGTAAAGAAATAT 59.099 40.000 0.00 0.00 0.00 1.28
2374 2429 7.068702 TGGTACTCCCTCCGTAAAGAAATATA 58.931 38.462 0.00 0.00 0.00 0.86
2375 2430 7.564660 TGGTACTCCCTCCGTAAAGAAATATAA 59.435 37.037 0.00 0.00 0.00 0.98
2376 2431 8.087136 GGTACTCCCTCCGTAAAGAAATATAAG 58.913 40.741 0.00 0.00 0.00 1.73
2377 2432 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
2378 2433 8.315220 ACTCCCTCCGTAAAGAAATATAAGAA 57.685 34.615 0.00 0.00 0.00 2.52
2379 2434 8.935741 ACTCCCTCCGTAAAGAAATATAAGAAT 58.064 33.333 0.00 0.00 0.00 2.40
2380 2435 9.209175 CTCCCTCCGTAAAGAAATATAAGAATG 57.791 37.037 0.00 0.00 0.00 2.67
2381 2436 8.711170 TCCCTCCGTAAAGAAATATAAGAATGT 58.289 33.333 0.00 0.00 0.00 2.71
2382 2437 9.338622 CCCTCCGTAAAGAAATATAAGAATGTT 57.661 33.333 0.00 0.00 0.00 2.71
2433 2488 9.239551 ACGCTTTTATAATTCTTTAAAGAGGGT 57.760 29.630 17.05 13.16 36.22 4.34
2434 2489 9.503427 CGCTTTTATAATTCTTTAAAGAGGGTG 57.497 33.333 17.05 4.85 36.22 4.61
2488 2543 1.664016 CGGTGAGACATTGCTTGCAAC 60.664 52.381 10.37 0.00 0.00 4.17
2493 2548 3.130869 TGAGACATTGCTTGCAACACTTT 59.869 39.130 10.37 0.00 0.00 2.66
2514 2575 8.959058 CACTTTATTCTACTGCTGTAATCTACG 58.041 37.037 4.91 0.00 0.00 3.51
2562 2623 2.200067 CCATGCAAGCTCTCGAACTAG 58.800 52.381 0.00 0.00 0.00 2.57
2572 2633 5.981174 AGCTCTCGAACTAGTTAGAGTACT 58.019 41.667 32.02 27.55 41.23 2.73
2576 2637 6.471146 TCTCGAACTAGTTAGAGTACTTGGT 58.529 40.000 32.02 0.56 41.23 3.67
2639 2700 6.946009 TGAAAAGACTTGGTTAATAAGAGGGG 59.054 38.462 8.80 0.00 0.00 4.79
2780 2845 6.357367 AGCGGTCCAATTAAATTCAGAGTAT 58.643 36.000 0.00 0.00 0.00 2.12
2861 2933 2.457366 AGAATCGACCCACTTGTGTC 57.543 50.000 0.00 0.00 0.00 3.67
2894 2966 5.294552 CGTATCTTTTCCACTCCCTTGATTC 59.705 44.000 0.00 0.00 0.00 2.52
2914 2986 2.292016 TCTGGGTAAAATGTTGTGTGCG 59.708 45.455 0.00 0.00 0.00 5.34
2938 3010 6.446318 GCCACATTGTGTTAAATCAAAGAGA 58.554 36.000 15.34 0.00 0.00 3.10
2939 3011 7.092716 GCCACATTGTGTTAAATCAAAGAGAT 58.907 34.615 15.34 0.00 39.09 2.75
2940 3012 8.243426 GCCACATTGTGTTAAATCAAAGAGATA 58.757 33.333 15.34 0.00 35.39 1.98
2960 3032 8.800370 GAGATAATTTTCTCTTTCCTCCACTT 57.200 34.615 16.11 0.00 39.27 3.16
2961 3033 8.572855 AGATAATTTTCTCTTTCCTCCACTTG 57.427 34.615 0.00 0.00 0.00 3.16
2962 3034 8.166726 AGATAATTTTCTCTTTCCTCCACTTGT 58.833 33.333 0.00 0.00 0.00 3.16
2963 3035 8.712228 ATAATTTTCTCTTTCCTCCACTTGTT 57.288 30.769 0.00 0.00 0.00 2.83
2964 3036 5.835113 TTTTCTCTTTCCTCCACTTGTTG 57.165 39.130 0.00 0.00 0.00 3.33
2965 3037 2.851195 TCTCTTTCCTCCACTTGTTGC 58.149 47.619 0.00 0.00 0.00 4.17
2966 3038 2.172505 TCTCTTTCCTCCACTTGTTGCA 59.827 45.455 0.00 0.00 0.00 4.08
2967 3039 2.951642 CTCTTTCCTCCACTTGTTGCAA 59.048 45.455 0.00 0.00 0.00 4.08
2968 3040 3.565307 TCTTTCCTCCACTTGTTGCAAT 58.435 40.909 0.59 0.00 0.00 3.56
2969 3041 3.318839 TCTTTCCTCCACTTGTTGCAATG 59.681 43.478 0.59 0.00 0.00 2.82
2970 3042 0.961019 TCCTCCACTTGTTGCAATGC 59.039 50.000 0.59 0.00 0.00 3.56
2971 3043 0.675083 CCTCCACTTGTTGCAATGCA 59.325 50.000 2.72 2.72 36.47 3.96
2972 3044 1.274167 CCTCCACTTGTTGCAATGCAT 59.726 47.619 9.39 0.00 38.76 3.96
2973 3045 2.289195 CCTCCACTTGTTGCAATGCATT 60.289 45.455 9.39 5.99 38.76 3.56
2974 3046 3.395639 CTCCACTTGTTGCAATGCATTT 58.604 40.909 9.39 0.00 38.76 2.32
2975 3047 4.558178 CTCCACTTGTTGCAATGCATTTA 58.442 39.130 9.39 0.00 38.76 1.40
2976 3048 4.305769 TCCACTTGTTGCAATGCATTTAC 58.694 39.130 9.39 5.04 38.76 2.01
2977 3049 4.056740 CCACTTGTTGCAATGCATTTACA 58.943 39.130 9.39 8.05 38.76 2.41
2978 3050 4.691685 CCACTTGTTGCAATGCATTTACAT 59.308 37.500 9.39 0.00 38.76 2.29
2979 3051 5.179742 CCACTTGTTGCAATGCATTTACATT 59.820 36.000 9.39 0.00 40.90 2.71
2991 3063 8.604640 AATGCATTTACATTGTCAAATCAACA 57.395 26.923 5.99 0.00 38.80 3.33
2992 3064 8.604640 ATGCATTTACATTGTCAAATCAACAA 57.395 26.923 0.00 0.00 40.63 2.83
2993 3065 8.604640 TGCATTTACATTGTCAAATCAACAAT 57.395 26.923 0.00 0.00 45.73 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 35 1.274728 CTGGCCATGGCTAGTAGCTAG 59.725 57.143 35.25 14.52 43.39 3.42
31 36 1.342074 CTGGCCATGGCTAGTAGCTA 58.658 55.000 35.25 16.39 43.39 3.32
32 37 2.140405 CTGGCCATGGCTAGTAGCT 58.860 57.895 35.25 0.00 43.39 3.32
33 38 4.787871 CTGGCCATGGCTAGTAGC 57.212 61.111 35.25 19.71 43.39 3.58
65 70 1.125274 CGCGCGAGAGATCGATGATC 61.125 60.000 28.94 0.14 39.17 2.92
461 466 0.673333 TCTTACTACGGCGTGGTCGA 60.673 55.000 31.97 24.55 39.71 4.20
539 560 1.817099 CTGATCCAAGGACGCTGCC 60.817 63.158 0.00 0.00 0.00 4.85
598 633 3.767673 CCCTTTAGTGGCTACAGTACTGA 59.232 47.826 29.30 11.77 32.39 3.41
723 758 2.398498 GCCGAGATGCAGTGTAGTATG 58.602 52.381 0.00 0.00 0.00 2.39
797 832 1.895020 TATATGGATCGGCGGGGTGC 61.895 60.000 7.21 0.00 45.38 5.01
934 969 2.423446 GGGAGCTATGTGGGCGAG 59.577 66.667 0.00 0.00 34.52 5.03
963 1001 0.174389 TCTTCTGCAGCGATCAGACC 59.826 55.000 9.47 0.00 39.99 3.85
1290 1332 1.139947 GCCGGAGAAAGAGTCGGAG 59.860 63.158 5.05 0.00 44.69 4.63
1506 1548 2.027625 GACGGAGCCGACAAGGTTG 61.028 63.158 16.83 0.00 43.70 3.77
1508 1550 2.915659 TGACGGAGCCGACAAGGT 60.916 61.111 16.83 0.00 40.53 3.50
1641 1683 1.676635 TCGGGACCAGTCGACGAAT 60.677 57.895 10.46 0.00 36.96 3.34
1680 1722 2.017559 CTGGGCTGGCCGTACTAGTC 62.018 65.000 16.08 0.00 36.85 2.59
1684 1726 3.976490 TAGCTGGGCTGGCCGTACT 62.976 63.158 16.08 14.18 40.10 2.73
2286 2341 7.316393 TCAATACAATGTTCTATAGGGGAGG 57.684 40.000 0.00 0.00 0.00 4.30
2340 2395 4.964262 ACGGAGGGAGTACCAAATAATGTA 59.036 41.667 0.00 0.00 43.89 2.29
2344 2399 5.721000 TCTTTACGGAGGGAGTACCAAATAA 59.279 40.000 0.00 0.00 43.89 1.40
2346 2401 4.098894 TCTTTACGGAGGGAGTACCAAAT 58.901 43.478 0.00 0.00 43.89 2.32
2347 2402 3.509442 TCTTTACGGAGGGAGTACCAAA 58.491 45.455 0.00 0.00 43.89 3.28
2349 2404 2.905415 TCTTTACGGAGGGAGTACCA 57.095 50.000 0.00 0.00 43.89 3.25
2350 2405 4.750021 ATTTCTTTACGGAGGGAGTACC 57.250 45.455 0.00 0.00 40.67 3.34
2351 2406 8.854117 TCTTATATTTCTTTACGGAGGGAGTAC 58.146 37.037 0.00 0.00 0.00 2.73
2352 2407 9.425248 TTCTTATATTTCTTTACGGAGGGAGTA 57.575 33.333 0.00 0.00 0.00 2.59
2353 2408 7.909485 TCTTATATTTCTTTACGGAGGGAGT 57.091 36.000 0.00 0.00 0.00 3.85
2354 2409 9.209175 CATTCTTATATTTCTTTACGGAGGGAG 57.791 37.037 0.00 0.00 0.00 4.30
2355 2410 8.711170 ACATTCTTATATTTCTTTACGGAGGGA 58.289 33.333 0.00 0.00 0.00 4.20
2356 2411 8.904099 ACATTCTTATATTTCTTTACGGAGGG 57.096 34.615 0.00 0.00 0.00 4.30
2407 2462 9.239551 ACCCTCTTTAAAGAATTATAAAAGCGT 57.760 29.630 18.25 0.55 34.03 5.07
2408 2463 9.503427 CACCCTCTTTAAAGAATTATAAAAGCG 57.497 33.333 18.25 3.08 34.03 4.68
2451 2506 1.483415 ACCGGAGTGCGGTTATATGTT 59.517 47.619 24.37 0.00 36.12 2.71
2488 2543 8.959058 CGTAGATTACAGCAGTAGAATAAAGTG 58.041 37.037 0.00 0.00 0.00 3.16
2493 2548 5.533528 TGCCGTAGATTACAGCAGTAGAATA 59.466 40.000 0.00 0.00 37.19 1.75
2514 2575 9.403110 CATTGCTTCTATACAGAATAATTTGCC 57.597 33.333 0.00 0.00 40.03 4.52
2576 2637 4.617959 GACGATGCAAGCTAGGTAATACA 58.382 43.478 0.00 0.00 0.00 2.29
2583 2644 2.240500 GCCGACGATGCAAGCTAGG 61.241 63.158 0.00 0.00 0.00 3.02
2618 2679 4.856182 ACCCCCTCTTATTAACCAAGTCTT 59.144 41.667 0.04 0.00 0.00 3.01
2639 2700 5.067283 CCACAAATTAAGCCACATAGGTACC 59.933 44.000 2.73 2.73 40.61 3.34
2780 2845 3.267233 AATGGCAGCCACTCCCCA 61.267 61.111 19.10 0.00 35.80 4.96
2871 2943 6.317391 CAGAATCAAGGGAGTGGAAAAGATAC 59.683 42.308 0.00 0.00 0.00 2.24
2894 2966 2.660490 CGCACACAACATTTTACCCAG 58.340 47.619 0.00 0.00 0.00 4.45
2914 2986 6.446318 TCTCTTTGATTTAACACAATGTGGC 58.554 36.000 18.37 0.69 37.94 5.01
2938 3010 8.579863 CAACAAGTGGAGGAAAGAGAAAATTAT 58.420 33.333 0.00 0.00 0.00 1.28
2939 3011 7.470009 GCAACAAGTGGAGGAAAGAGAAAATTA 60.470 37.037 0.00 0.00 0.00 1.40
2940 3012 6.683861 GCAACAAGTGGAGGAAAGAGAAAATT 60.684 38.462 0.00 0.00 0.00 1.82
2941 3013 5.221322 GCAACAAGTGGAGGAAAGAGAAAAT 60.221 40.000 0.00 0.00 0.00 1.82
2942 3014 4.097892 GCAACAAGTGGAGGAAAGAGAAAA 59.902 41.667 0.00 0.00 0.00 2.29
2943 3015 3.632145 GCAACAAGTGGAGGAAAGAGAAA 59.368 43.478 0.00 0.00 0.00 2.52
2946 3018 2.575532 TGCAACAAGTGGAGGAAAGAG 58.424 47.619 0.00 0.00 0.00 2.85
2948 3020 3.645884 CATTGCAACAAGTGGAGGAAAG 58.354 45.455 0.00 0.00 0.00 2.62
2949 3021 2.224018 GCATTGCAACAAGTGGAGGAAA 60.224 45.455 0.00 0.00 0.00 3.13
2950 3022 1.340889 GCATTGCAACAAGTGGAGGAA 59.659 47.619 0.00 0.00 0.00 3.36
2951 3023 0.961019 GCATTGCAACAAGTGGAGGA 59.039 50.000 0.00 0.00 0.00 3.71
2952 3024 0.675083 TGCATTGCAACAAGTGGAGG 59.325 50.000 9.33 0.00 34.76 4.30
2953 3025 2.736144 ATGCATTGCAACAAGTGGAG 57.264 45.000 16.46 0.00 43.62 3.86
2954 3026 3.472283 AAATGCATTGCAACAAGTGGA 57.528 38.095 16.46 0.00 43.62 4.02
2955 3027 4.056740 TGTAAATGCATTGCAACAAGTGG 58.943 39.130 16.46 0.00 43.62 4.00
2956 3028 5.849357 ATGTAAATGCATTGCAACAAGTG 57.151 34.783 16.46 0.00 43.62 3.16
2957 3029 6.230849 CAATGTAAATGCATTGCAACAAGT 57.769 33.333 16.46 5.69 45.84 3.16
2966 3038 8.604640 TGTTGATTTGACAATGTAAATGCATT 57.395 26.923 5.99 5.99 39.42 3.56
2967 3039 8.604640 TTGTTGATTTGACAATGTAAATGCAT 57.395 26.923 0.00 0.00 32.44 3.96
2968 3040 8.604640 ATTGTTGATTTGACAATGTAAATGCA 57.395 26.923 2.02 0.00 43.87 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.