Multiple sequence alignment - TraesCS3D01G369100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G369100 chr3D 100.000 8284 0 0 1 8284 482206733 482198450 0.000000e+00 15298.0
1 TraesCS3D01G369100 chr3B 94.113 3822 151 26 3533 7315 644309261 644305475 0.000000e+00 5744.0
2 TraesCS3D01G369100 chr3B 90.015 2724 187 53 851 3528 644312068 644309384 0.000000e+00 3445.0
3 TraesCS3D01G369100 chr3B 84.951 1030 79 34 7297 8284 644305308 644304313 0.000000e+00 974.0
4 TraesCS3D01G369100 chr3B 87.745 612 35 20 176 767 644312662 644312071 0.000000e+00 678.0
5 TraesCS3D01G369100 chr3B 88.485 165 11 4 23 180 644313022 644312859 8.490000e-45 193.0
6 TraesCS3D01G369100 chr3B 96.000 100 3 1 765 864 245305180 245305082 2.390000e-35 161.0
7 TraesCS3D01G369100 chr3B 98.214 56 1 0 4003 4058 644308725 644308670 1.900000e-16 99.0
8 TraesCS3D01G369100 chr3A 96.015 2359 82 4 4417 6772 625240701 625238352 0.000000e+00 3825.0
9 TraesCS3D01G369100 chr3A 89.802 2520 148 48 969 3433 625244197 625241732 0.000000e+00 3129.0
10 TraesCS3D01G369100 chr3A 95.401 848 23 3 3426 4258 625241546 625240700 0.000000e+00 1336.0
11 TraesCS3D01G369100 chr3A 84.904 1040 82 46 6796 7782 625238355 625237338 0.000000e+00 981.0
12 TraesCS3D01G369100 chr3A 84.305 446 36 14 127 539 625245010 625244566 1.000000e-108 405.0
13 TraesCS3D01G369100 chr3A 93.077 260 18 0 8025 8284 625237206 625236947 1.690000e-101 381.0
14 TraesCS3D01G369100 chr3A 87.843 255 16 11 525 768 625244547 625244297 1.360000e-72 285.0
15 TraesCS3D01G369100 chr3A 90.909 121 9 2 7770 7888 625237312 625237192 2.390000e-35 161.0
16 TraesCS3D01G369100 chr6D 95.758 165 7 0 4254 4418 438321898 438321734 4.930000e-67 267.0
17 TraesCS3D01G369100 chr4D 96.296 162 6 0 4257 4418 334164552 334164391 4.930000e-67 267.0
18 TraesCS3D01G369100 chr4D 91.892 185 13 2 4251 4433 326379864 326380048 2.970000e-64 257.0
19 TraesCS3D01G369100 chr5A 95.238 168 7 1 4255 4421 320214407 320214240 1.770000e-66 265.0
20 TraesCS3D01G369100 chr5A 100.000 29 0 0 1865 1893 51468835 51468863 4.000000e-03 54.7
21 TraesCS3D01G369100 chr4B 92.432 185 12 2 4251 4433 406389289 406389473 6.380000e-66 263.0
22 TraesCS3D01G369100 chr2D 93.785 177 8 2 4245 4418 413879783 413879607 6.380000e-66 263.0
23 TraesCS3D01G369100 chr2D 93.678 174 10 1 4257 4430 299891554 299891726 8.250000e-65 259.0
24 TraesCS3D01G369100 chr7A 93.143 175 10 2 4245 4418 677696236 677696409 1.070000e-63 255.0
25 TraesCS3D01G369100 chr7A 95.789 95 2 2 761 854 695622856 695622763 1.440000e-32 152.0
26 TraesCS3D01G369100 chr7A 88.618 123 10 4 748 868 449734162 449734042 6.700000e-31 147.0
27 TraesCS3D01G369100 chr5D 98.889 90 0 1 764 853 21789200 21789112 8.610000e-35 159.0
28 TraesCS3D01G369100 chr5D 94.915 59 3 0 2292 2350 529529556 529529498 8.850000e-15 93.5
29 TraesCS3D01G369100 chr5D 100.000 29 0 0 1865 1893 61416644 61416672 4.000000e-03 54.7
30 TraesCS3D01G369100 chr1A 95.000 100 5 0 755 854 168394375 168394474 3.100000e-34 158.0
31 TraesCS3D01G369100 chr1A 91.781 73 5 1 3101 3172 469589442 469589514 5.290000e-17 100.0
32 TraesCS3D01G369100 chr1A 75.336 223 41 8 2448 2664 469588606 469588820 2.460000e-15 95.3
33 TraesCS3D01G369100 chr1D 92.661 109 7 1 752 859 50875372 50875264 1.110000e-33 156.0
34 TraesCS3D01G369100 chr1D 85.556 90 13 0 2448 2537 370627053 370627142 2.460000e-15 95.3
35 TraesCS3D01G369100 chr1D 90.278 72 6 1 3101 3171 370627881 370627952 8.850000e-15 93.5
36 TraesCS3D01G369100 chr1B 94.175 103 5 1 747 849 47517447 47517346 1.110000e-33 156.0
37 TraesCS3D01G369100 chr1B 90.411 73 6 1 3101 3172 494156654 494156726 2.460000e-15 95.3
38 TraesCS3D01G369100 chr1B 84.444 90 14 0 2448 2537 494155829 494155918 1.150000e-13 89.8
39 TraesCS3D01G369100 chr2A 91.071 112 6 4 752 861 133985110 133985001 1.860000e-31 148.0
40 TraesCS3D01G369100 chr4A 89.167 120 10 3 746 863 632619599 632619717 6.700000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G369100 chr3D 482198450 482206733 8283 True 15298.000 15298 100.000000 1 8284 1 chr3D.!!$R1 8283
1 TraesCS3D01G369100 chr3B 644304313 644313022 8709 True 1855.500 5744 90.587167 23 8284 6 chr3B.!!$R2 8261
2 TraesCS3D01G369100 chr3A 625236947 625245010 8063 True 1312.875 3825 90.282000 127 8284 8 chr3A.!!$R1 8157

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
959 1255 0.167251 AAATAACCGAAAGCACGCCG 59.833 50.0 0.00 0.0 0.00 6.46 F
1615 1971 0.108424 GAGCTGATCGGAACTGTGCT 60.108 55.0 5.48 0.0 0.00 4.40 F
2372 2756 1.281419 TCCCGGAAGAGGTTATTGCA 58.719 50.0 0.73 0.0 0.00 4.08 F
2948 3337 1.352083 TGTGCCCAGAGCTTCTTACT 58.648 50.0 0.00 0.0 44.23 2.24 F
3507 4093 2.363306 TGAGAGGTTGTGGCATTTGT 57.637 45.0 0.00 0.0 0.00 2.83 F
4706 5436 0.741915 GTTCCCGTTTTGGCTGTTGA 59.258 50.0 0.00 0.0 35.87 3.18 F
5811 6545 0.235926 GGACAAAACGAGCTCACAGC 59.764 55.0 15.40 0.0 42.84 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2593 2982 0.036577 CACTGCAGAGAGGACAAGGG 60.037 60.000 23.35 0.00 0.00 3.95 R
2693 3082 3.116531 GCGGGGTGCAGACGTAAC 61.117 66.667 6.50 0.00 45.45 2.50 R
3424 3817 3.312404 CTGGAAGCCATATGGTCCG 57.688 57.895 22.79 13.98 34.12 4.79 R
4417 5139 1.842562 AGACTTCCATGCATGCCTACT 59.157 47.619 21.69 12.40 0.00 2.57 R
5096 5827 0.811281 GCACCTTCAGTACCAATGGC 59.189 55.000 0.00 0.00 0.00 4.40 R
6561 7295 0.166814 GTTCGCCAACATCTGTGCTC 59.833 55.000 0.00 0.00 32.14 4.26 R
7706 8698 0.243095 AGGACGACGTTGTAGAAGGC 59.757 55.000 8.83 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 5.146460 CGACACACACAACCATAATTCAAG 58.854 41.667 0.00 0.00 0.00 3.02
42 43 4.340666 ACACACACAACCATAATTCAAGCA 59.659 37.500 0.00 0.00 0.00 3.91
46 47 7.274033 CACACACAACCATAATTCAAGCATAAG 59.726 37.037 0.00 0.00 0.00 1.73
47 48 7.176515 ACACACAACCATAATTCAAGCATAAGA 59.823 33.333 0.00 0.00 0.00 2.10
48 49 8.192774 CACACAACCATAATTCAAGCATAAGAT 58.807 33.333 0.00 0.00 0.00 2.40
49 50 9.407380 ACACAACCATAATTCAAGCATAAGATA 57.593 29.630 0.00 0.00 0.00 1.98
56 57 9.699985 CATAATTCAAGCATAAGATAAGATCGC 57.300 33.333 0.00 0.00 0.00 4.58
57 58 7.976135 AATTCAAGCATAAGATAAGATCGCT 57.024 32.000 0.00 0.00 0.00 4.93
83 91 3.133901 TCAGCATTCGTATACACCACCAT 59.866 43.478 3.32 0.00 0.00 3.55
91 99 6.223351 TCGTATACACCACCATGTATTTGA 57.777 37.500 3.32 1.08 41.98 2.69
99 107 3.181473 CCACCATGTATTTGATGGCAAGG 60.181 47.826 0.00 0.00 43.82 3.61
125 133 7.209471 ACAAAAGCTTGTTTGGAATCGTATA 57.791 32.000 13.92 0.00 43.45 1.47
133 141 6.767524 TGTTTGGAATCGTATAAAAGCCAT 57.232 33.333 0.00 0.00 0.00 4.40
168 176 1.203125 ACCATACCAACCAACCAAGGG 60.203 52.381 0.00 0.00 0.00 3.95
254 477 6.092122 CGACTGCAACAGGATAAGTTTTATCA 59.908 38.462 10.11 0.00 35.51 2.15
258 486 6.127925 TGCAACAGGATAAGTTTTATCAGCTG 60.128 38.462 7.63 7.63 0.00 4.24
263 491 7.148171 ACAGGATAAGTTTTATCAGCTGCTTTC 60.148 37.037 9.47 6.12 0.00 2.62
284 512 0.953960 GATCGCCAAAGTGTTCCCGT 60.954 55.000 0.00 0.00 0.00 5.28
292 520 0.535102 AAGTGTTCCCGTGAAGCCAG 60.535 55.000 0.00 0.00 0.00 4.85
309 537 2.229543 GCCAGAAAGCATCATTCACACA 59.770 45.455 0.00 0.00 0.00 3.72
340 568 8.395633 CGAAACTAAAGAAAGAAGAGAAAACCA 58.604 33.333 0.00 0.00 0.00 3.67
341 569 9.504710 GAAACTAAAGAAAGAAGAGAAAACCAC 57.495 33.333 0.00 0.00 0.00 4.16
344 572 7.780271 ACTAAAGAAAGAAGAGAAAACCACCAT 59.220 33.333 0.00 0.00 0.00 3.55
345 573 9.284968 CTAAAGAAAGAAGAGAAAACCACCATA 57.715 33.333 0.00 0.00 0.00 2.74
413 641 2.643875 TTATGAAATCATCGCGCACG 57.356 45.000 8.75 0.00 37.76 5.34
471 711 5.104402 TGACCTCCAAATCTAATCATGCTCA 60.104 40.000 0.00 0.00 0.00 4.26
472 712 5.950023 ACCTCCAAATCTAATCATGCTCAT 58.050 37.500 0.00 0.00 0.00 2.90
473 713 6.002704 ACCTCCAAATCTAATCATGCTCATC 58.997 40.000 0.00 0.00 0.00 2.92
474 714 6.002082 CCTCCAAATCTAATCATGCTCATCA 58.998 40.000 0.00 0.00 0.00 3.07
476 716 7.308649 CCTCCAAATCTAATCATGCTCATCAAG 60.309 40.741 0.00 0.00 0.00 3.02
495 744 4.470664 TCAAGCTCCCCAATTAATTTGCAT 59.529 37.500 0.00 0.00 33.73 3.96
585 867 2.191786 AATTGGGTGCGGGATGACGA 62.192 55.000 0.00 0.00 35.47 4.20
591 873 1.673009 TGCGGGATGACGAAAACCC 60.673 57.895 0.00 0.00 39.02 4.11
653 935 7.446625 GGAATTAATGCTGATGAGAGTGGTTAT 59.553 37.037 0.00 0.00 0.00 1.89
661 943 5.348986 TGATGAGAGTGGTTATTTCGCTAC 58.651 41.667 0.00 0.00 0.00 3.58
662 944 5.127194 TGATGAGAGTGGTTATTTCGCTACT 59.873 40.000 0.00 0.00 0.00 2.57
663 945 4.995124 TGAGAGTGGTTATTTCGCTACTC 58.005 43.478 0.00 0.00 35.88 2.59
664 946 4.461431 TGAGAGTGGTTATTTCGCTACTCA 59.539 41.667 9.91 0.00 37.57 3.41
665 947 5.000012 AGAGTGGTTATTTCGCTACTCAG 58.000 43.478 9.91 0.00 37.57 3.35
669 960 7.501559 AGAGTGGTTATTTCGCTACTCAGTATA 59.498 37.037 9.91 0.00 37.57 1.47
680 971 5.960683 CGCTACTCAGTATATCGTCATTAGC 59.039 44.000 0.00 0.00 0.00 3.09
725 1016 6.040729 TGCAAATTAGGCGTACCACTATACTA 59.959 38.462 0.00 0.00 39.06 1.82
726 1017 6.364435 GCAAATTAGGCGTACCACTATACTAC 59.636 42.308 0.00 0.00 39.06 2.73
727 1018 7.655490 CAAATTAGGCGTACCACTATACTACT 58.345 38.462 0.00 0.00 39.06 2.57
728 1019 6.814506 ATTAGGCGTACCACTATACTACTG 57.185 41.667 0.00 0.00 39.06 2.74
791 1084 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
793 1086 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
843 1136 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
844 1137 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
845 1138 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
846 1139 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
847 1140 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
848 1141 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
849 1142 9.512588 TCTTATATTAGTTTACGGAGGGAGTAG 57.487 37.037 0.00 0.00 0.00 2.57
850 1143 9.294614 CTTATATTAGTTTACGGAGGGAGTAGT 57.705 37.037 0.00 0.00 0.00 2.73
853 1146 9.819754 ATATTAGTTTACGGAGGGAGTAGTAAT 57.180 33.333 0.00 0.00 0.00 1.89
854 1147 7.961326 TTAGTTTACGGAGGGAGTAGTAATT 57.039 36.000 0.00 0.00 0.00 1.40
855 1148 9.646522 ATTAGTTTACGGAGGGAGTAGTAATTA 57.353 33.333 0.00 0.00 0.00 1.40
856 1149 7.961326 AGTTTACGGAGGGAGTAGTAATTAA 57.039 36.000 0.00 0.00 0.00 1.40
868 1161 8.373981 GGGAGTAGTAATTAAGTTAATCCCTCC 58.626 40.741 20.43 17.74 37.62 4.30
883 1179 4.603094 TCCCTCCTCACTAATCACTACA 57.397 45.455 0.00 0.00 0.00 2.74
915 1211 1.347320 GTCGTATATAAGCAGGCGCC 58.653 55.000 21.89 21.89 39.83 6.53
956 1252 5.318349 ACGATTTAAATAACCGAAAGCACG 58.682 37.500 12.98 5.64 0.00 5.34
959 1255 0.167251 AAATAACCGAAAGCACGCCG 59.833 50.000 0.00 0.00 0.00 6.46
1018 1317 3.561143 ACCAACAGGCAACAGTAATCAA 58.439 40.909 0.00 0.00 33.79 2.57
1147 1460 3.686045 CGCCCTATCCTCTCGCCC 61.686 72.222 0.00 0.00 0.00 6.13
1151 1464 2.978565 CTATCCTCTCGCCCGCGA 60.979 66.667 8.23 11.79 46.87 5.87
1345 1665 0.671251 TCCGCGTGAAAATGGCTTTT 59.329 45.000 4.92 0.00 37.28 2.27
1406 1726 2.266070 CACGGATTTGTGTGGCCAT 58.734 52.632 9.72 0.00 35.12 4.40
1413 1733 4.701651 CGGATTTGTGTGGCCATATGATAT 59.298 41.667 9.72 0.00 0.00 1.63
1419 1751 4.286808 TGTGTGGCCATATGATATGCTAGT 59.713 41.667 9.72 0.00 0.00 2.57
1433 1766 8.703604 TGATATGCTAGTTGTTTACTGTTCTC 57.296 34.615 0.00 0.00 37.73 2.87
1435 1768 3.739300 TGCTAGTTGTTTACTGTTCTCGC 59.261 43.478 0.00 0.00 37.73 5.03
1445 1778 6.147164 TGTTTACTGTTCTCGCCTGATTTTAG 59.853 38.462 0.00 0.00 0.00 1.85
1455 1788 3.689649 CGCCTGATTTTAGTTAGGTGCTT 59.310 43.478 0.00 0.00 34.45 3.91
1456 1789 4.873827 CGCCTGATTTTAGTTAGGTGCTTA 59.126 41.667 0.00 0.00 34.45 3.09
1458 1791 5.297029 GCCTGATTTTAGTTAGGTGCTTAGG 59.703 44.000 0.00 0.00 32.85 2.69
1459 1792 6.650120 CCTGATTTTAGTTAGGTGCTTAGGA 58.350 40.000 0.00 0.00 0.00 2.94
1460 1793 7.283329 CCTGATTTTAGTTAGGTGCTTAGGAT 58.717 38.462 0.00 0.00 0.00 3.24
1463 1796 9.174166 TGATTTTAGTTAGGTGCTTAGGATTTC 57.826 33.333 0.00 0.00 0.00 2.17
1467 1800 0.927029 AGGTGCTTAGGATTTCCCCC 59.073 55.000 0.00 0.00 36.42 5.40
1468 1801 0.465642 GGTGCTTAGGATTTCCCCCG 60.466 60.000 0.00 0.00 36.42 5.73
1469 1802 0.544697 GTGCTTAGGATTTCCCCCGA 59.455 55.000 0.00 0.00 36.42 5.14
1470 1803 1.064979 GTGCTTAGGATTTCCCCCGAA 60.065 52.381 0.00 0.00 36.42 4.30
1474 1807 3.119245 GCTTAGGATTTCCCCCGAAAAAC 60.119 47.826 0.00 0.00 41.25 2.43
1478 1811 4.942944 AGGATTTCCCCCGAAAAACTAAT 58.057 39.130 0.00 0.00 41.25 1.73
1487 1820 7.208777 TCCCCCGAAAAACTAATTAAACAAAC 58.791 34.615 0.00 0.00 0.00 2.93
1531 1866 4.993705 TGGAACAGGAGTAGGTTTGATT 57.006 40.909 0.00 0.00 0.00 2.57
1541 1876 8.893727 CAGGAGTAGGTTTGATTAAATTCGAAT 58.106 33.333 4.39 4.39 0.00 3.34
1544 1879 7.186804 AGTAGGTTTGATTAAATTCGAATGCG 58.813 34.615 12.25 0.00 39.35 4.73
1558 1893 4.965062 TCGAATGCGAGGTTTTGATTTAC 58.035 39.130 0.00 0.00 42.51 2.01
1560 1895 3.757745 ATGCGAGGTTTTGATTTACGG 57.242 42.857 0.00 0.00 0.00 4.02
1561 1896 1.198178 TGCGAGGTTTTGATTTACGGC 59.802 47.619 0.00 0.00 0.00 5.68
1562 1897 1.467342 GCGAGGTTTTGATTTACGGCT 59.533 47.619 0.00 0.00 0.00 5.52
1594 1950 1.440145 GCAGAAATCACCTAGGGCGC 61.440 60.000 14.81 0.00 0.00 6.53
1614 1970 1.086634 GGAGCTGATCGGAACTGTGC 61.087 60.000 5.48 0.00 0.00 4.57
1615 1971 0.108424 GAGCTGATCGGAACTGTGCT 60.108 55.000 5.48 0.00 0.00 4.40
1617 1973 1.975363 GCTGATCGGAACTGTGCTGC 61.975 60.000 5.48 0.00 0.00 5.25
1635 1991 3.492656 GCTGCGTACAAGATATGGGAAGA 60.493 47.826 0.00 0.00 0.00 2.87
1800 2162 6.109359 AGACCGAGAAGAAAAAGTATGATGG 58.891 40.000 0.00 0.00 0.00 3.51
1805 2176 6.457528 CGAGAAGAAAAAGTATGATGGCTTCC 60.458 42.308 0.00 0.00 32.98 3.46
1819 2190 6.513180 TGATGGCTTCCTCTATTTAGTTACG 58.487 40.000 0.00 0.00 0.00 3.18
1824 2202 6.207928 GCTTCCTCTATTTAGTTACGGAGTC 58.792 44.000 0.00 0.00 43.93 3.36
1835 2213 1.553706 TACGGAGTCTGTTTCCCCTC 58.446 55.000 10.53 0.00 43.93 4.30
1862 2240 6.546484 AGAAGGTGGTTGATATATGATTGGG 58.454 40.000 0.00 0.00 0.00 4.12
1909 2287 2.359975 TCGCGAGGCAGACAGAGA 60.360 61.111 3.71 0.00 0.00 3.10
1938 2316 3.260740 CAAGTCTGCTCATCAAGAGGTC 58.739 50.000 0.00 0.00 44.86 3.85
1948 2326 3.262660 TCATCAAGAGGTCAGTGAAGCAT 59.737 43.478 0.00 0.00 0.00 3.79
1956 2334 2.485814 GGTCAGTGAAGCATGAGAAACC 59.514 50.000 0.00 0.00 0.00 3.27
1957 2335 3.141398 GTCAGTGAAGCATGAGAAACCA 58.859 45.455 0.00 0.00 0.00 3.67
1959 2337 4.005650 TCAGTGAAGCATGAGAAACCATC 58.994 43.478 0.00 0.00 0.00 3.51
1969 2347 6.461110 CATGAGAAACCATCAGGCTTTATT 57.539 37.500 0.00 0.00 39.06 1.40
1976 2354 3.443681 ACCATCAGGCTTTATTTGGTTCG 59.556 43.478 0.00 0.00 39.06 3.95
1979 2357 4.015872 TCAGGCTTTATTTGGTTCGTCT 57.984 40.909 0.00 0.00 0.00 4.18
2115 2493 2.767960 TGTTCTCTAGGAGCATGCATCA 59.232 45.455 21.98 0.52 30.30 3.07
2134 2516 5.472148 CATCAGCATCTGCCTTTTGTTTTA 58.528 37.500 0.00 0.00 43.38 1.52
2170 2554 1.419374 GCTTACTGTGTGAGTGACGG 58.581 55.000 0.00 0.00 35.96 4.79
2236 2620 4.491924 GGCGATGTGTGAGTGTAATTTACG 60.492 45.833 2.30 0.00 0.00 3.18
2240 2624 4.706035 TGTGTGAGTGTAATTTACGGGTT 58.294 39.130 2.30 0.00 0.00 4.11
2241 2625 5.851720 TGTGTGAGTGTAATTTACGGGTTA 58.148 37.500 2.30 0.00 0.00 2.85
2242 2626 5.695816 TGTGTGAGTGTAATTTACGGGTTAC 59.304 40.000 2.30 0.00 0.00 2.50
2277 2661 7.201785 GGGAGATTAGTTTTTGTTGTTGACTCA 60.202 37.037 0.00 0.00 0.00 3.41
2305 2689 3.253230 ACTCTGTTTTGTTTTGCTGTGC 58.747 40.909 0.00 0.00 0.00 4.57
2370 2754 3.629142 ACTTCCCGGAAGAGGTTATTG 57.371 47.619 30.28 5.08 41.71 1.90
2372 2756 1.281419 TCCCGGAAGAGGTTATTGCA 58.719 50.000 0.73 0.00 0.00 4.08
2409 2795 9.528018 CTTCTTTTGTTTCATGCTTTAGGTAAA 57.472 29.630 0.00 0.00 0.00 2.01
2549 2935 5.335191 CCTCAAGGTAAGTGACAAAGAATGC 60.335 44.000 0.00 0.00 0.00 3.56
2552 2938 3.503748 AGGTAAGTGACAAAGAATGCTGC 59.496 43.478 0.00 0.00 0.00 5.25
2593 2982 9.109393 TCATCAAGAACCAGTAATATAGTTTGC 57.891 33.333 0.00 0.00 0.00 3.68
2603 2992 6.483640 CAGTAATATAGTTTGCCCTTGTCCTC 59.516 42.308 0.00 0.00 0.00 3.71
2719 3108 4.481112 GCACCCCGCAATGCTTCG 62.481 66.667 2.94 0.00 41.79 3.79
2822 3211 5.718146 TCTTCAGTAAGCTTCTCTGTGATG 58.282 41.667 22.34 13.28 32.36 3.07
2830 3219 3.055963 AGCTTCTCTGTGATGTCCTTCTG 60.056 47.826 0.00 0.00 0.00 3.02
2912 3301 4.418392 GCATGATGCTTTCTTAGGTTGTG 58.582 43.478 10.72 0.00 40.96 3.33
2948 3337 1.352083 TGTGCCCAGAGCTTCTTACT 58.648 50.000 0.00 0.00 44.23 2.24
3002 3391 5.014858 TGGTCTCTTGGTAACTACCTACTG 58.985 45.833 7.42 0.00 46.58 2.74
3256 3645 6.769608 TCTACATAGCTTGTAATCAATGCG 57.230 37.500 0.00 0.00 40.27 4.73
3396 3789 2.945008 CTCAAGTGCACTTTCTTGTGGA 59.055 45.455 29.23 19.14 40.97 4.02
3507 4093 2.363306 TGAGAGGTTGTGGCATTTGT 57.637 45.000 0.00 0.00 0.00 2.83
3516 4102 4.202050 GGTTGTGGCATTTGTATCTCCATC 60.202 45.833 0.00 0.00 0.00 3.51
3642 4347 4.924462 TCGCAATATCGACTTTTGTGTGTA 59.076 37.500 13.69 0.00 33.67 2.90
3688 4403 4.156373 TCATGCACATGTCTAACATTGTGG 59.844 41.667 10.27 7.35 36.53 4.17
3998 4720 7.103641 TGGACTGTAGTATCTGTTCCATTTTC 58.896 38.462 0.00 0.00 0.00 2.29
4262 4984 6.127054 TGCACCTTCATGCTATATATACTCCC 60.127 42.308 0.00 0.00 46.28 4.30
4265 4987 6.841755 ACCTTCATGCTATATATACTCCCTCC 59.158 42.308 0.00 0.00 0.00 4.30
4282 5004 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4283 5005 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4327 5049 9.362151 TGAACTACATATGGATGTACATAGACA 57.638 33.333 8.71 8.94 44.77 3.41
4370 5092 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4371 5093 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
4373 5095 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
4375 5097 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
4376 5098 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
4377 5099 5.134202 TGCTCCGTATGTAGTCCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
4378 5100 4.021456 TGCTCCGTATGTAGTCCATATTGG 60.021 45.833 0.00 0.00 38.29 3.16
4379 5101 4.219944 GCTCCGTATGTAGTCCATATTGGA 59.780 45.833 0.00 0.00 45.98 3.53
4417 5139 7.232127 CACTTATATTTAGGAACGGAGGGAGTA 59.768 40.741 0.00 0.00 0.00 2.59
4631 5361 8.655970 GCACTTTTTATCCCATTACAAAACATC 58.344 33.333 0.00 0.00 0.00 3.06
4632 5362 9.703892 CACTTTTTATCCCATTACAAAACATCA 57.296 29.630 0.00 0.00 0.00 3.07
4706 5436 0.741915 GTTCCCGTTTTGGCTGTTGA 59.258 50.000 0.00 0.00 35.87 3.18
4718 5448 2.633967 TGGCTGTTGATTGCAGGAAAAT 59.366 40.909 0.00 0.00 34.73 1.82
4785 5515 4.368315 CTGTAAGTTACTATGCGCATGGA 58.632 43.478 36.30 19.10 0.00 3.41
4885 5616 9.837525 GCATCTGATATTCTGAAAAATCCATAC 57.162 33.333 11.38 0.16 0.00 2.39
5086 5817 2.233922 GTCAGGGCTAGCTACAAGTTCA 59.766 50.000 15.72 0.00 0.00 3.18
5096 5827 3.064820 AGCTACAAGTTCAAACAACACCG 59.935 43.478 0.00 0.00 0.00 4.94
5146 5877 4.651994 CTGATGATGCGTCAGTTAAAACC 58.348 43.478 15.04 0.00 41.17 3.27
5185 5916 7.441157 CGTGATCTTAAAAGCCATAAGGACATA 59.559 37.037 0.00 0.00 36.89 2.29
5425 6156 2.332063 ACAGTGTTTCCTCCAGTGTG 57.668 50.000 0.00 0.00 43.12 3.82
5598 6332 2.181975 TCTGATCATGTCCTGCAGTCA 58.818 47.619 13.81 11.87 0.00 3.41
5636 6370 9.136323 ACATTCTCCAAAAGTTAAGATCAAAGT 57.864 29.630 0.00 0.00 0.00 2.66
5680 6414 3.826157 CCCTACCAAGCAGACAATTGAAA 59.174 43.478 13.59 0.00 0.00 2.69
5703 6437 0.251121 TTGATGCCGCTGAAGGGAAA 60.251 50.000 0.00 0.00 34.56 3.13
5757 6491 2.844839 CCTAGCTTCCCTCCCCGG 60.845 72.222 0.00 0.00 0.00 5.73
5811 6545 0.235926 GGACAAAACGAGCTCACAGC 59.764 55.000 15.40 0.00 42.84 4.40
5823 6557 1.543429 GCTCACAGCAAGGTTACCACT 60.543 52.381 3.51 0.00 41.89 4.00
6111 6845 0.478072 AATGCTCAACCCTGGACACA 59.522 50.000 0.00 0.00 0.00 3.72
6171 6905 3.068590 CAGAGCTCAACACCACCAATTTT 59.931 43.478 17.77 0.00 0.00 1.82
6184 6918 5.183904 ACCACCAATTTTCAGAAGAGTATGC 59.816 40.000 0.00 0.00 0.00 3.14
6215 6949 6.641169 TGATGATAGTAGTGTAAGCTCAGG 57.359 41.667 0.00 0.00 0.00 3.86
6452 7186 4.081254 TCAGTCATCAGAGAAATCACCAGG 60.081 45.833 0.00 0.00 0.00 4.45
6461 7195 4.080638 AGAGAAATCACCAGGTCCTCATTC 60.081 45.833 0.00 0.00 0.00 2.67
6538 7272 1.002366 CGATGAGCAGGCAGTAACAC 58.998 55.000 0.00 0.00 0.00 3.32
6583 7317 1.664016 GCACAGATGTTGGCGAACTTG 60.664 52.381 13.01 10.53 32.79 3.16
6693 7427 6.547510 AGCCCAACATTTCAGAAGATAATACC 59.452 38.462 0.00 0.00 0.00 2.73
6724 7458 1.089920 ACTCGCCAATTCAGATGTGC 58.910 50.000 0.00 0.00 0.00 4.57
6739 7473 0.243365 TGTGCTAAAATTGCCCGCTG 59.757 50.000 0.00 0.00 0.00 5.18
6815 7549 2.100197 GACCCCAGCAAAGGAAATACC 58.900 52.381 0.00 0.00 39.35 2.73
6954 7688 1.228154 GGTGGTTCTGAGGCCGTTT 60.228 57.895 0.00 0.00 0.00 3.60
7073 7807 5.315348 AGTGCCCGTAACATTAACCTTTTA 58.685 37.500 0.00 0.00 0.00 1.52
7074 7808 5.947566 AGTGCCCGTAACATTAACCTTTTAT 59.052 36.000 0.00 0.00 0.00 1.40
7076 7810 7.039574 AGTGCCCGTAACATTAACCTTTTATTT 60.040 33.333 0.00 0.00 0.00 1.40
7077 7811 7.599621 GTGCCCGTAACATTAACCTTTTATTTT 59.400 33.333 0.00 0.00 0.00 1.82
7078 7812 8.148999 TGCCCGTAACATTAACCTTTTATTTTT 58.851 29.630 0.00 0.00 0.00 1.94
7079 7813 9.636879 GCCCGTAACATTAACCTTTTATTTTTA 57.363 29.630 0.00 0.00 0.00 1.52
7162 7896 7.489435 CCCTCATTTCGTGTGCTATATGTATAG 59.511 40.741 3.24 3.24 38.89 1.31
7173 7907 7.147897 TGTGCTATATGTATAGTAGTCCCATGC 60.148 40.741 8.42 0.00 38.30 4.06
7181 7915 1.003580 AGTAGTCCCATGCTTGTGTGG 59.996 52.381 0.00 0.00 35.22 4.17
7233 7981 7.360101 CCCAGACTTGTAAACAGAAATAAGACG 60.360 40.741 0.00 0.00 0.00 4.18
7285 8033 4.008074 AGGTATGCATATTGAAGGTCCG 57.992 45.455 10.16 0.00 0.00 4.79
7295 8043 6.183360 GCATATTGAAGGTCCGCTATTTATCC 60.183 42.308 0.00 0.00 0.00 2.59
7337 8273 2.159014 CGGATTCGGGAGGATGTGTTTA 60.159 50.000 0.00 0.00 0.00 2.01
7398 8337 1.055849 TGTCACCCACACAGTAGCAT 58.944 50.000 0.00 0.00 0.00 3.79
7433 8372 3.754965 TCCAGTTAGCAAACTTCAGCAT 58.245 40.909 0.00 0.00 43.60 3.79
7463 8411 6.518706 GCATCTCATACTCTGATTCCTGATGT 60.519 42.308 0.00 0.00 35.51 3.06
7472 8427 7.271511 ACTCTGATTCCTGATGTTATCACTTC 58.728 38.462 0.00 0.00 35.06 3.01
7475 8430 7.124750 TCTGATTCCTGATGTTATCACTTCTCA 59.875 37.037 0.00 0.00 35.06 3.27
7477 8432 7.930325 TGATTCCTGATGTTATCACTTCTCATC 59.070 37.037 0.00 0.00 35.06 2.92
7498 8467 5.801350 TCGCTCTTATCAATTTCCAAGTG 57.199 39.130 0.00 0.00 0.00 3.16
7514 8506 0.756903 AGTGCTTCCACGGTTGTACT 59.243 50.000 0.00 0.00 46.62 2.73
7515 8507 1.965643 AGTGCTTCCACGGTTGTACTA 59.034 47.619 0.00 0.00 46.62 1.82
7516 8508 2.064014 GTGCTTCCACGGTTGTACTAC 58.936 52.381 0.00 0.00 31.34 2.73
7517 8509 1.965643 TGCTTCCACGGTTGTACTACT 59.034 47.619 7.38 0.00 0.00 2.57
7519 8511 3.181463 TGCTTCCACGGTTGTACTACTTT 60.181 43.478 7.38 0.00 0.00 2.66
7520 8512 3.431233 GCTTCCACGGTTGTACTACTTTC 59.569 47.826 7.38 0.00 0.00 2.62
7521 8513 4.798593 GCTTCCACGGTTGTACTACTTTCT 60.799 45.833 7.38 0.00 0.00 2.52
7522 8514 4.942761 TCCACGGTTGTACTACTTTCTT 57.057 40.909 7.38 0.00 0.00 2.52
7523 8515 6.403866 TTCCACGGTTGTACTACTTTCTTA 57.596 37.500 7.38 0.00 0.00 2.10
7525 8517 6.996509 TCCACGGTTGTACTACTTTCTTATT 58.003 36.000 7.38 0.00 0.00 1.40
7527 8519 7.599998 TCCACGGTTGTACTACTTTCTTATTTC 59.400 37.037 7.38 0.00 0.00 2.17
7528 8520 7.148523 CCACGGTTGTACTACTTTCTTATTTCC 60.149 40.741 7.38 0.00 0.00 3.13
7529 8521 7.385752 CACGGTTGTACTACTTTCTTATTTCCA 59.614 37.037 7.38 0.00 0.00 3.53
7531 8523 7.148523 CGGTTGTACTACTTTCTTATTTCCACC 60.149 40.741 7.38 0.00 0.00 4.61
7532 8524 7.881751 GGTTGTACTACTTTCTTATTTCCACCT 59.118 37.037 7.38 0.00 0.00 4.00
7533 8525 9.281371 GTTGTACTACTTTCTTATTTCCACCTT 57.719 33.333 0.00 0.00 0.00 3.50
7534 8526 9.856162 TTGTACTACTTTCTTATTTCCACCTTT 57.144 29.630 0.00 0.00 0.00 3.11
7535 8527 9.280174 TGTACTACTTTCTTATTTCCACCTTTG 57.720 33.333 0.00 0.00 0.00 2.77
7536 8528 9.281371 GTACTACTTTCTTATTTCCACCTTTGT 57.719 33.333 0.00 0.00 0.00 2.83
7538 8530 9.281371 ACTACTTTCTTATTTCCACCTTTGTAC 57.719 33.333 0.00 0.00 0.00 2.90
7539 8531 9.503399 CTACTTTCTTATTTCCACCTTTGTACT 57.497 33.333 0.00 0.00 0.00 2.73
7540 8532 8.392372 ACTTTCTTATTTCCACCTTTGTACTC 57.608 34.615 0.00 0.00 0.00 2.59
7541 8533 8.218488 ACTTTCTTATTTCCACCTTTGTACTCT 58.782 33.333 0.00 0.00 0.00 3.24
7542 8534 8.990163 TTTCTTATTTCCACCTTTGTACTCTT 57.010 30.769 0.00 0.00 0.00 2.85
7543 8535 7.979444 TCTTATTTCCACCTTTGTACTCTTG 57.021 36.000 0.00 0.00 0.00 3.02
7544 8536 6.430000 TCTTATTTCCACCTTTGTACTCTTGC 59.570 38.462 0.00 0.00 0.00 4.01
7545 8537 3.569194 TTCCACCTTTGTACTCTTGCA 57.431 42.857 0.00 0.00 0.00 4.08
7546 8538 2.846193 TCCACCTTTGTACTCTTGCAC 58.154 47.619 0.00 0.00 0.00 4.57
7547 8539 2.438021 TCCACCTTTGTACTCTTGCACT 59.562 45.455 0.00 0.00 0.00 4.40
7568 8560 1.519408 GTGCTGCCGGAGTTTCTTAA 58.481 50.000 5.05 0.00 0.00 1.85
7571 8563 0.721718 CTGCCGGAGTTTCTTAAGCG 59.278 55.000 5.05 0.00 0.00 4.68
7572 8564 1.296056 TGCCGGAGTTTCTTAAGCGC 61.296 55.000 5.05 0.00 0.00 5.92
7576 8568 1.404315 CGGAGTTTCTTAAGCGCCTCT 60.404 52.381 2.29 0.00 0.00 3.69
7587 8579 2.050351 CGCCTCTTGTCGTCGTGT 60.050 61.111 0.00 0.00 0.00 4.49
7589 8581 0.386352 CGCCTCTTGTCGTCGTGTAA 60.386 55.000 0.00 0.00 0.00 2.41
7593 8585 2.092211 CCTCTTGTCGTCGTGTAATTGC 59.908 50.000 0.00 0.00 0.00 3.56
7594 8586 1.717113 TCTTGTCGTCGTGTAATTGCG 59.283 47.619 0.00 0.00 0.00 4.85
7604 8596 2.927477 CGTGTAATTGCGACACCTGTAT 59.073 45.455 4.74 0.00 43.53 2.29
7607 8599 4.390603 GTGTAATTGCGACACCTGTATTGA 59.609 41.667 0.00 0.00 41.13 2.57
7612 8604 1.394917 GCGACACCTGTATTGAAGCTG 59.605 52.381 0.00 0.00 0.00 4.24
7628 8620 1.743252 CTGCGAGCCTTGAAGGTCC 60.743 63.158 13.58 4.12 37.80 4.46
7631 8623 2.436824 GAGCCTTGAAGGTCCCGC 60.437 66.667 13.58 0.00 37.80 6.13
7633 8625 4.344865 GCCTTGAAGGTCCCGCCA 62.345 66.667 13.58 0.00 37.80 5.69
7637 8629 0.462759 CTTGAAGGTCCCGCCAGATC 60.463 60.000 0.00 0.00 40.61 2.75
7638 8630 0.909610 TTGAAGGTCCCGCCAGATCT 60.910 55.000 0.00 0.00 40.61 2.75
7641 8633 0.698818 AAGGTCCCGCCAGATCTTTT 59.301 50.000 0.00 0.00 33.28 2.27
7644 8636 1.090052 GTCCCGCCAGATCTTTTCCG 61.090 60.000 0.00 0.00 0.00 4.30
7706 8698 0.528466 ACGCCACAGCATCGTATCAG 60.528 55.000 0.00 0.00 39.83 2.90
7767 8759 8.810327 AATAAATTAAAATACAACGTCGTCCG 57.190 30.769 0.00 0.00 44.03 4.79
7768 8760 3.703558 TTAAAATACAACGTCGTCCGC 57.296 42.857 0.00 0.00 41.42 5.54
7776 8815 4.075763 ACAACGTCGTCCGCTATATATC 57.924 45.455 0.00 0.00 41.42 1.63
7778 8817 4.142945 ACAACGTCGTCCGCTATATATCTC 60.143 45.833 0.00 0.00 41.42 2.75
7814 8854 2.051614 GCGAGTCGTGTCACGTCA 60.052 61.111 23.82 3.88 43.14 4.35
7820 8860 0.660595 GTCGTGTCACGTCACCTCAG 60.661 60.000 23.82 0.00 43.14 3.35
7829 8869 1.079266 GTCACCTCAGCTGCCTCTG 60.079 63.158 9.47 1.49 35.46 3.35
8152 9201 3.712881 GCCGGTGCTGTCGTTCAC 61.713 66.667 1.90 0.00 33.53 3.18
8153 9202 2.279851 CCGGTGCTGTCGTTCACA 60.280 61.111 0.00 0.00 35.04 3.58
8222 9271 4.735132 TACGACCTGCTGCACGCC 62.735 66.667 10.51 0.00 38.05 5.68
8259 9308 2.482333 CGGAGCTTCGACCGGATCT 61.482 63.158 9.41 0.00 44.59 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.814919 TGTGTCGCGGTTATCCATTTTT 59.185 40.909 6.13 0.00 0.00 1.94
3 4 2.160813 GTGTGTCGCGGTTATCCATTTT 59.839 45.455 6.13 0.00 0.00 1.82
4 5 1.735571 GTGTGTCGCGGTTATCCATTT 59.264 47.619 6.13 0.00 0.00 2.32
5 6 1.338294 TGTGTGTCGCGGTTATCCATT 60.338 47.619 6.13 0.00 0.00 3.16
6 7 0.248012 TGTGTGTCGCGGTTATCCAT 59.752 50.000 6.13 0.00 0.00 3.41
7 8 0.668096 GTGTGTGTCGCGGTTATCCA 60.668 55.000 6.13 0.00 0.00 3.41
8 9 0.668096 TGTGTGTGTCGCGGTTATCC 60.668 55.000 6.13 0.00 0.00 2.59
9 10 1.136446 GTTGTGTGTGTCGCGGTTATC 60.136 52.381 6.13 0.00 0.00 1.75
10 11 0.863144 GTTGTGTGTGTCGCGGTTAT 59.137 50.000 6.13 0.00 0.00 1.89
11 12 1.152989 GGTTGTGTGTGTCGCGGTTA 61.153 55.000 6.13 0.00 0.00 2.85
12 13 2.466140 GGTTGTGTGTGTCGCGGTT 61.466 57.895 6.13 0.00 0.00 4.44
13 14 2.893404 GGTTGTGTGTGTCGCGGT 60.893 61.111 6.13 0.00 0.00 5.68
14 15 0.946700 TATGGTTGTGTGTGTCGCGG 60.947 55.000 6.13 0.00 0.00 6.46
15 16 0.862490 TTATGGTTGTGTGTGTCGCG 59.138 50.000 0.00 0.00 0.00 5.87
16 17 3.058570 TGAATTATGGTTGTGTGTGTCGC 60.059 43.478 0.00 0.00 0.00 5.19
17 18 4.740741 TGAATTATGGTTGTGTGTGTCG 57.259 40.909 0.00 0.00 0.00 4.35
18 19 4.917415 GCTTGAATTATGGTTGTGTGTGTC 59.083 41.667 0.00 0.00 0.00 3.67
19 20 4.340666 TGCTTGAATTATGGTTGTGTGTGT 59.659 37.500 0.00 0.00 0.00 3.72
20 21 4.869215 TGCTTGAATTATGGTTGTGTGTG 58.131 39.130 0.00 0.00 0.00 3.82
21 22 5.726980 ATGCTTGAATTATGGTTGTGTGT 57.273 34.783 0.00 0.00 0.00 3.72
40 41 4.917998 TGACGAAGCGATCTTATCTTATGC 59.082 41.667 0.00 0.00 31.48 3.14
42 43 5.157781 GCTGACGAAGCGATCTTATCTTAT 58.842 41.667 0.00 0.00 43.45 1.73
56 57 3.486108 GGTGTATACGAATGCTGACGAAG 59.514 47.826 0.00 0.00 0.00 3.79
57 58 3.119424 TGGTGTATACGAATGCTGACGAA 60.119 43.478 0.00 0.00 0.00 3.85
83 91 5.798125 TTTGTTCCTTGCCATCAAATACA 57.202 34.783 0.00 0.00 0.00 2.29
91 99 2.435437 ACAAGCTTTTGTTCCTTGCCAT 59.565 40.909 0.00 0.00 39.55 4.40
99 107 4.803613 ACGATTCCAAACAAGCTTTTGTTC 59.196 37.500 4.30 1.44 43.66 3.18
120 128 2.096417 GCGGCACTATGGCTTTTATACG 60.096 50.000 0.00 0.00 41.25 3.06
125 133 0.322456 TCTGCGGCACTATGGCTTTT 60.322 50.000 0.00 0.00 41.25 2.27
133 141 3.755628 GGTCGGTCTGCGGCACTA 61.756 66.667 0.00 0.00 0.00 2.74
168 176 1.136336 GTGATGGTTCAACGTCTTCGC 60.136 52.381 0.00 0.00 41.18 4.70
226 448 1.929836 CTTATCCTGTTGCAGTCGAGC 59.070 52.381 0.00 0.00 0.00 5.03
233 455 5.945784 AGCTGATAAAACTTATCCTGTTGCA 59.054 36.000 4.40 0.00 0.00 4.08
254 477 2.512515 GGCGATCCGAAAGCAGCT 60.513 61.111 0.00 0.00 0.00 4.24
258 486 0.179189 CACTTTGGCGATCCGAAAGC 60.179 55.000 14.27 0.99 35.37 3.51
263 491 1.644786 GGGAACACTTTGGCGATCCG 61.645 60.000 0.00 0.00 34.14 4.18
284 512 3.192001 GTGAATGATGCTTTCTGGCTTCA 59.808 43.478 7.33 7.33 45.62 3.02
292 520 3.228749 CGTGTGTGTGAATGATGCTTTC 58.771 45.455 0.00 0.00 0.00 2.62
309 537 4.807304 TCTTCTTTCTTTAGTTTCGCGTGT 59.193 37.500 5.77 0.00 0.00 4.49
340 568 6.405538 CAAAGCACCCATACATTTTTATGGT 58.594 36.000 8.09 0.00 45.09 3.55
341 569 5.816777 CCAAAGCACCCATACATTTTTATGG 59.183 40.000 2.62 2.62 45.83 2.74
344 572 4.530161 AGCCAAAGCACCCATACATTTTTA 59.470 37.500 0.00 0.00 43.56 1.52
345 573 3.327464 AGCCAAAGCACCCATACATTTTT 59.673 39.130 0.00 0.00 43.56 1.94
383 611 3.124560 TGATTTCATAAATCCGCGCGTA 58.875 40.909 29.95 14.98 45.23 4.42
387 615 3.155998 GCGATGATTTCATAAATCCGCG 58.844 45.455 15.21 0.00 45.23 6.46
393 621 2.286125 CCGTGCGCGATGATTTCATAAA 60.286 45.455 23.45 0.00 41.33 1.40
436 676 0.108186 TGGAGGTCACATCACGATGC 60.108 55.000 6.94 0.00 42.39 3.91
471 711 4.470664 TGCAAATTAATTGGGGAGCTTGAT 59.529 37.500 0.39 0.00 39.54 2.57
472 712 3.837146 TGCAAATTAATTGGGGAGCTTGA 59.163 39.130 0.39 0.00 39.54 3.02
473 713 4.205065 TGCAAATTAATTGGGGAGCTTG 57.795 40.909 0.39 0.00 39.54 4.01
474 714 4.470664 TGATGCAAATTAATTGGGGAGCTT 59.529 37.500 0.39 0.75 39.54 3.74
476 716 4.122046 GTGATGCAAATTAATTGGGGAGC 58.878 43.478 0.39 2.51 39.54 4.70
477 717 5.603170 AGTGATGCAAATTAATTGGGGAG 57.397 39.130 0.39 0.00 39.54 4.30
552 834 3.055891 CACCCAATTCTTCATTTCCACCC 60.056 47.826 0.00 0.00 0.00 4.61
653 935 5.996669 TGACGATATACTGAGTAGCGAAA 57.003 39.130 15.73 4.43 0.00 3.46
661 943 7.435192 TGTTTGTGCTAATGACGATATACTGAG 59.565 37.037 0.00 0.00 0.00 3.35
662 944 7.262048 TGTTTGTGCTAATGACGATATACTGA 58.738 34.615 0.00 0.00 0.00 3.41
663 945 7.463469 TGTTTGTGCTAATGACGATATACTG 57.537 36.000 0.00 0.00 0.00 2.74
664 946 9.758651 TTATGTTTGTGCTAATGACGATATACT 57.241 29.630 0.00 0.00 0.00 2.12
694 985 3.685756 GGTACGCCTAATTTGCAACAGTA 59.314 43.478 0.00 0.00 0.00 2.74
817 1110 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
818 1111 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
819 1112 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
820 1113 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
821 1114 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
822 1115 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
823 1116 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
824 1117 9.294614 ACTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
827 1120 9.819754 ATTACTACTCCCTCCGTAAACTAATAT 57.180 33.333 0.00 0.00 0.00 1.28
828 1121 9.646522 AATTACTACTCCCTCCGTAAACTAATA 57.353 33.333 0.00 0.00 0.00 0.98
829 1122 8.544687 AATTACTACTCCCTCCGTAAACTAAT 57.455 34.615 0.00 0.00 0.00 1.73
830 1123 7.961326 AATTACTACTCCCTCCGTAAACTAA 57.039 36.000 0.00 0.00 0.00 2.24
831 1124 9.125026 CTTAATTACTACTCCCTCCGTAAACTA 57.875 37.037 0.00 0.00 0.00 2.24
832 1125 7.617329 ACTTAATTACTACTCCCTCCGTAAACT 59.383 37.037 0.00 0.00 0.00 2.66
833 1126 7.776107 ACTTAATTACTACTCCCTCCGTAAAC 58.224 38.462 0.00 0.00 0.00 2.01
834 1127 7.961326 ACTTAATTACTACTCCCTCCGTAAA 57.039 36.000 0.00 0.00 0.00 2.01
835 1128 7.961326 AACTTAATTACTACTCCCTCCGTAA 57.039 36.000 0.00 0.00 0.00 3.18
836 1129 9.646522 ATTAACTTAATTACTACTCCCTCCGTA 57.353 33.333 0.00 0.00 0.00 4.02
837 1130 7.961326 TTAACTTAATTACTACTCCCTCCGT 57.039 36.000 0.00 0.00 0.00 4.69
838 1131 8.087136 GGATTAACTTAATTACTACTCCCTCCG 58.913 40.741 0.00 0.00 0.00 4.63
839 1132 8.373981 GGGATTAACTTAATTACTACTCCCTCC 58.626 40.741 12.39 0.00 0.00 4.30
840 1133 9.156940 AGGGATTAACTTAATTACTACTCCCTC 57.843 37.037 14.68 0.67 36.90 4.30
841 1134 9.156940 GAGGGATTAACTTAATTACTACTCCCT 57.843 37.037 17.80 17.80 43.41 4.20
842 1135 8.373981 GGAGGGATTAACTTAATTACTACTCCC 58.626 40.741 12.03 12.03 0.00 4.30
843 1136 9.156940 AGGAGGGATTAACTTAATTACTACTCC 57.843 37.037 14.95 14.95 0.00 3.85
845 1138 9.725206 TGAGGAGGGATTAACTTAATTACTACT 57.275 33.333 9.35 9.35 31.91 2.57
846 1139 9.761504 GTGAGGAGGGATTAACTTAATTACTAC 57.238 37.037 0.00 0.00 0.00 2.73
847 1140 9.725206 AGTGAGGAGGGATTAACTTAATTACTA 57.275 33.333 0.00 0.00 0.00 1.82
848 1141 8.625467 AGTGAGGAGGGATTAACTTAATTACT 57.375 34.615 0.00 0.00 0.00 2.24
852 1145 9.225682 TGATTAGTGAGGAGGGATTAACTTAAT 57.774 33.333 0.00 0.00 0.00 1.40
853 1146 8.483758 GTGATTAGTGAGGAGGGATTAACTTAA 58.516 37.037 0.00 0.00 0.00 1.85
854 1147 7.844779 AGTGATTAGTGAGGAGGGATTAACTTA 59.155 37.037 0.00 0.00 0.00 2.24
855 1148 6.674419 AGTGATTAGTGAGGAGGGATTAACTT 59.326 38.462 0.00 0.00 0.00 2.66
856 1149 6.206042 AGTGATTAGTGAGGAGGGATTAACT 58.794 40.000 0.00 0.00 0.00 2.24
868 1161 2.799917 GCCGCCTGTAGTGATTAGTGAG 60.800 54.545 0.00 0.00 0.00 3.51
915 1211 0.614697 GTCAAATGGGGGAAGTGGGG 60.615 60.000 0.00 0.00 0.00 4.96
956 1252 0.649993 CCTTGTTTGTTTGTTGCGGC 59.350 50.000 0.00 0.00 0.00 6.53
959 1255 4.096382 TCTCTCTCCTTGTTTGTTTGTTGC 59.904 41.667 0.00 0.00 0.00 4.17
997 1296 3.222173 TGATTACTGTTGCCTGTTGGT 57.778 42.857 0.00 0.00 35.27 3.67
1018 1317 1.386550 CCCCTCCGGTTTGGGATTT 59.613 57.895 24.38 0.00 46.15 2.17
1039 1338 4.247380 GGCCTCGGCTGCTATGCT 62.247 66.667 8.00 0.00 41.60 3.79
1402 1722 8.446273 CAGTAAACAACTAGCATATCATATGGC 58.554 37.037 6.79 0.00 35.76 4.40
1413 1733 3.739300 GCGAGAACAGTAAACAACTAGCA 59.261 43.478 0.00 0.00 35.76 3.49
1419 1751 3.462483 TCAGGCGAGAACAGTAAACAA 57.538 42.857 0.00 0.00 0.00 2.83
1433 1766 3.270877 AGCACCTAACTAAAATCAGGCG 58.729 45.455 0.00 0.00 0.00 5.52
1435 1768 6.650120 TCCTAAGCACCTAACTAAAATCAGG 58.350 40.000 0.00 0.00 0.00 3.86
1445 1778 3.552875 GGGGAAATCCTAAGCACCTAAC 58.447 50.000 0.00 0.00 35.95 2.34
1455 1788 5.517620 TTAGTTTTTCGGGGGAAATCCTA 57.482 39.130 0.00 0.00 35.95 2.94
1456 1789 2.992847 AGTTTTTCGGGGGAAATCCT 57.007 45.000 0.00 0.00 35.95 3.24
1458 1791 8.089597 TGTTTAATTAGTTTTTCGGGGGAAATC 58.910 33.333 0.00 0.00 0.00 2.17
1459 1792 7.964624 TGTTTAATTAGTTTTTCGGGGGAAAT 58.035 30.769 0.00 0.00 0.00 2.17
1460 1793 7.357429 TGTTTAATTAGTTTTTCGGGGGAAA 57.643 32.000 0.00 0.00 0.00 3.13
1463 1796 6.985059 TGTTTGTTTAATTAGTTTTTCGGGGG 59.015 34.615 0.00 0.00 0.00 5.40
1467 1800 9.078753 ACACCTGTTTGTTTAATTAGTTTTTCG 57.921 29.630 0.00 0.00 0.00 3.46
1478 1811 8.528044 AGAATCCTAAACACCTGTTTGTTTAA 57.472 30.769 12.72 0.00 46.36 1.52
1487 1820 6.488006 CCATCCAATAGAATCCTAAACACCTG 59.512 42.308 0.00 0.00 0.00 4.00
1519 1852 7.065324 TCGCATTCGAATTTAATCAAACCTACT 59.935 33.333 8.21 0.00 42.44 2.57
1521 1854 7.310072 TCGCATTCGAATTTAATCAAACCTA 57.690 32.000 8.21 0.00 42.44 3.08
1522 1855 6.189677 TCGCATTCGAATTTAATCAAACCT 57.810 33.333 8.21 0.00 42.44 3.50
1524 1859 6.027749 ACCTCGCATTCGAATTTAATCAAAC 58.972 36.000 8.21 0.00 44.98 2.93
1531 1866 5.614923 TCAAAACCTCGCATTCGAATTTA 57.385 34.783 8.21 0.00 44.98 1.40
1541 1876 1.198178 GCCGTAAATCAAAACCTCGCA 59.802 47.619 0.00 0.00 0.00 5.10
1544 1879 5.813080 ATACAGCCGTAAATCAAAACCTC 57.187 39.130 0.00 0.00 0.00 3.85
1548 1883 6.935741 AGCATATACAGCCGTAAATCAAAA 57.064 33.333 0.00 0.00 0.00 2.44
1549 1884 6.935741 AAGCATATACAGCCGTAAATCAAA 57.064 33.333 0.00 0.00 0.00 2.69
1551 1886 6.724263 CAAAAGCATATACAGCCGTAAATCA 58.276 36.000 0.00 0.00 0.00 2.57
1552 1887 5.625311 GCAAAAGCATATACAGCCGTAAATC 59.375 40.000 0.00 0.00 0.00 2.17
1553 1888 5.067153 TGCAAAAGCATATACAGCCGTAAAT 59.933 36.000 0.00 0.00 0.00 1.40
1554 1889 4.396478 TGCAAAAGCATATACAGCCGTAAA 59.604 37.500 0.00 0.00 0.00 2.01
1556 1891 3.536570 TGCAAAAGCATATACAGCCGTA 58.463 40.909 0.00 0.00 0.00 4.02
1558 1893 2.613595 TCTGCAAAAGCATATACAGCCG 59.386 45.455 0.00 0.00 0.00 5.52
1560 1895 6.197842 GTGATTTCTGCAAAAGCATATACAGC 59.802 38.462 12.91 0.00 0.00 4.40
1561 1896 6.694411 GGTGATTTCTGCAAAAGCATATACAG 59.306 38.462 12.91 0.00 0.00 2.74
1562 1897 6.377996 AGGTGATTTCTGCAAAAGCATATACA 59.622 34.615 12.91 0.00 0.00 2.29
1594 1950 0.803768 CACAGTTCCGATCAGCTCCG 60.804 60.000 0.00 0.00 0.00 4.63
1614 1970 4.322080 TCTTCCCATATCTTGTACGCAG 57.678 45.455 0.00 0.00 0.00 5.18
1615 1971 4.955811 ATCTTCCCATATCTTGTACGCA 57.044 40.909 0.00 0.00 0.00 5.24
1617 1973 5.470098 CCCAAATCTTCCCATATCTTGTACG 59.530 44.000 0.00 0.00 0.00 3.67
1635 1991 7.992608 GCAAAATTCAATCCCTAATACCCAAAT 59.007 33.333 0.00 0.00 0.00 2.32
1676 2032 0.114954 ATGGTGCCCAACATCTTGGT 59.885 50.000 0.00 0.00 45.22 3.67
1800 2162 6.039605 AGACTCCGTAACTAAATAGAGGAAGC 59.960 42.308 0.00 0.00 0.00 3.86
1805 2176 7.701501 GGAAACAGACTCCGTAACTAAATAGAG 59.298 40.741 0.00 0.00 0.00 2.43
1819 2190 2.372172 TCTTTGAGGGGAAACAGACTCC 59.628 50.000 0.00 0.00 0.00 3.85
1824 2202 2.887152 CACCTTCTTTGAGGGGAAACAG 59.113 50.000 1.00 0.00 43.24 3.16
1835 2213 8.355169 CCAATCATATATCAACCACCTTCTTTG 58.645 37.037 0.00 0.00 0.00 2.77
1862 2240 2.426522 TCTTCAGCACATACCTGCAAC 58.573 47.619 0.00 0.00 39.86 4.17
1938 2316 3.754850 TGATGGTTTCTCATGCTTCACTG 59.245 43.478 0.00 0.00 0.00 3.66
1948 2326 5.185635 CCAAATAAAGCCTGATGGTTTCTCA 59.814 40.000 0.00 0.00 43.33 3.27
1956 2334 4.396166 AGACGAACCAAATAAAGCCTGATG 59.604 41.667 0.00 0.00 0.00 3.07
1957 2335 4.589908 AGACGAACCAAATAAAGCCTGAT 58.410 39.130 0.00 0.00 0.00 2.90
1959 2337 6.436843 AATAGACGAACCAAATAAAGCCTG 57.563 37.500 0.00 0.00 0.00 4.85
1969 2347 9.878667 TGAAATCAATACTAATAGACGAACCAA 57.121 29.630 0.00 0.00 0.00 3.67
2014 2392 4.677673 ATAAGGGCCATCTGCAATTTTC 57.322 40.909 6.18 0.00 43.89 2.29
2115 2493 6.991938 TGTAATAAAACAAAAGGCAGATGCT 58.008 32.000 4.59 0.00 41.70 3.79
2134 2516 6.069963 ACAGTAAGCCAGAGGAAAGATGTAAT 60.070 38.462 0.00 0.00 0.00 1.89
2236 2620 1.305549 TCCCAGACTCCCGTAACCC 60.306 63.158 0.00 0.00 0.00 4.11
2240 2624 2.512896 ACTAATCTCCCAGACTCCCGTA 59.487 50.000 0.00 0.00 0.00 4.02
2241 2625 1.288335 ACTAATCTCCCAGACTCCCGT 59.712 52.381 0.00 0.00 0.00 5.28
2242 2626 2.074729 ACTAATCTCCCAGACTCCCG 57.925 55.000 0.00 0.00 0.00 5.14
2277 2661 4.923281 GCAAAACAAAACAGAGTCAACAGT 59.077 37.500 0.00 0.00 0.00 3.55
2305 2689 2.569404 AGTTCAGCCCTACCAGAAAGAG 59.431 50.000 0.00 0.00 0.00 2.85
2385 2771 8.470805 TGTTTACCTAAAGCATGAAACAAAAGA 58.529 29.630 0.00 0.00 34.74 2.52
2409 2795 6.936900 ACAGTTAGCACACTTCTGAATATTGT 59.063 34.615 0.00 0.00 33.63 2.71
2549 2935 4.393990 TGATGAACTAAATGACAGCAGCAG 59.606 41.667 0.00 0.00 0.00 4.24
2552 2938 6.732531 TCTTGATGAACTAAATGACAGCAG 57.267 37.500 0.00 0.00 30.77 4.24
2589 2978 0.250901 GCAGAGAGGACAAGGGCAAA 60.251 55.000 0.00 0.00 0.00 3.68
2590 2979 1.376466 GCAGAGAGGACAAGGGCAA 59.624 57.895 0.00 0.00 0.00 4.52
2593 2982 0.036577 CACTGCAGAGAGGACAAGGG 60.037 60.000 23.35 0.00 0.00 3.95
2603 2992 4.959596 AATATGTTTGAGCACTGCAGAG 57.040 40.909 23.35 14.77 0.00 3.35
2693 3082 3.116531 GCGGGGTGCAGACGTAAC 61.117 66.667 6.50 0.00 45.45 2.50
2719 3108 8.950208 ACTAGAGATATTTAAACTCCAGCAAC 57.050 34.615 0.00 0.00 0.00 4.17
2804 3193 4.093011 AGGACATCACAGAGAAGCTTACT 58.907 43.478 0.00 0.00 0.00 2.24
2871 3260 5.528690 TCATGCTAACACATAAGATTCAGGC 59.471 40.000 0.00 0.00 0.00 4.85
2912 3301 3.584834 GCACATGTAATTTGGTGTTCCC 58.415 45.455 0.00 0.00 33.88 3.97
3232 3621 7.116948 GTCGCATTGATTACAAGCTATGTAGAT 59.883 37.037 8.21 6.32 45.00 1.98
3234 3623 6.200854 TGTCGCATTGATTACAAGCTATGTAG 59.799 38.462 8.21 0.53 45.00 2.74
3256 3645 7.281100 AGGCACTTTCTAAATACAAGCTATGTC 59.719 37.037 5.04 0.00 38.68 3.06
3424 3817 3.312404 CTGGAAGCCATATGGTCCG 57.688 57.895 22.79 13.98 34.12 4.79
3507 4093 9.273016 GGAAGAACAAATTATTCGATGGAGATA 57.727 33.333 0.00 0.00 36.98 1.98
3658 4373 6.747125 TGTTAGACATGTGCATGAAAATTGT 58.253 32.000 17.85 0.00 41.20 2.71
3688 4403 8.809468 AAAAGAAACCCATCCTTCTCTTATAC 57.191 34.615 0.00 0.00 30.57 1.47
4077 4799 4.032960 TCACAATGGTAAACTGCATCCT 57.967 40.909 0.00 0.00 0.00 3.24
4295 5017 9.942850 TGTACATCCATATGTAGTTCATATTGG 57.057 33.333 1.24 5.94 46.68 3.16
4301 5023 9.362151 TGTCTATGTACATCCATATGTAGTTCA 57.638 33.333 12.68 3.73 46.68 3.18
4343 5065 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4346 5068 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4347 5069 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4348 5070 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
4351 5073 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
4370 5092 8.970859 AAGTGTTTCTAGAGATTCCAATATGG 57.029 34.615 0.00 0.00 39.43 2.74
4386 5108 7.985752 CCTCCGTTCCTAAATATAAGTGTTTCT 59.014 37.037 0.00 0.00 0.00 2.52
4387 5109 7.226128 CCCTCCGTTCCTAAATATAAGTGTTTC 59.774 40.741 0.00 0.00 0.00 2.78
4388 5110 7.052248 CCCTCCGTTCCTAAATATAAGTGTTT 58.948 38.462 0.00 0.00 0.00 2.83
4389 5111 6.384886 TCCCTCCGTTCCTAAATATAAGTGTT 59.615 38.462 0.00 0.00 0.00 3.32
4390 5112 5.901276 TCCCTCCGTTCCTAAATATAAGTGT 59.099 40.000 0.00 0.00 0.00 3.55
4391 5113 6.041751 ACTCCCTCCGTTCCTAAATATAAGTG 59.958 42.308 0.00 0.00 0.00 3.16
4417 5139 1.842562 AGACTTCCATGCATGCCTACT 59.157 47.619 21.69 12.40 0.00 2.57
4503 5233 9.398921 AGAAAGGATAGAATGGTCCATAATACT 57.601 33.333 4.33 2.93 36.96 2.12
4706 5436 6.093082 GCTTTTGATAAGCATTTTCCTGCAAT 59.907 34.615 2.71 0.00 44.77 3.56
4783 5513 7.923414 AAACAGGTATTGTAGTGAGATTTCC 57.077 36.000 0.00 0.00 39.73 3.13
4785 5515 8.380099 TGGTAAACAGGTATTGTAGTGAGATTT 58.620 33.333 0.00 0.00 39.73 2.17
5086 5817 1.338655 GTACCAATGGCGGTGTTGTTT 59.661 47.619 0.00 0.00 40.39 2.83
5096 5827 0.811281 GCACCTTCAGTACCAATGGC 59.189 55.000 0.00 0.00 0.00 4.40
5146 5877 2.483876 AGATCACGTGGTGTTGAACAG 58.516 47.619 17.00 0.00 34.79 3.16
5185 5916 4.017958 TGTCTCTCCAGTTCAGGACTATCT 60.018 45.833 0.00 0.00 36.65 1.98
5425 6156 3.368236 GTGGCGTCACTTCACTAGATTTC 59.632 47.826 14.12 0.00 40.58 2.17
5598 6332 5.867903 TTGGAGAATGTTCAACAATTGGT 57.132 34.783 10.83 0.00 0.00 3.67
5680 6414 0.813184 CCTTCAGCGGCATCAACATT 59.187 50.000 1.45 0.00 0.00 2.71
5757 6491 1.078567 CTCTGCTCCCACTTGCCTC 60.079 63.158 0.00 0.00 0.00 4.70
5811 6545 1.470098 GCATGCTCAGTGGTAACCTTG 59.530 52.381 11.37 0.00 0.00 3.61
5823 6557 1.001181 GAAGGGCTTTTTGCATGCTCA 59.999 47.619 20.33 2.20 45.15 4.26
6111 6845 5.186409 AGTTTGATCATGCTTTTGTATGGCT 59.814 36.000 0.00 0.00 41.84 4.75
6171 6905 7.725844 TCATCATTACTAGGCATACTCTTCTGA 59.274 37.037 0.00 0.00 0.00 3.27
6215 6949 2.134789 ATCAACAGATGGGTCCAAGC 57.865 50.000 0.00 0.00 0.00 4.01
6452 7186 2.506472 GAGGGCCCGAATGAGGAC 59.494 66.667 18.44 0.00 0.00 3.85
6538 7272 1.202336 GGCTTCCATTTCAGCATTCCG 60.202 52.381 0.00 0.00 37.81 4.30
6561 7295 0.166814 GTTCGCCAACATCTGTGCTC 59.833 55.000 0.00 0.00 32.14 4.26
6583 7317 6.315393 TCCACTTCTTCTTTTATAACATCGCC 59.685 38.462 0.00 0.00 0.00 5.54
6661 7395 2.624838 CTGAAATGTTGGGCTTCACAGT 59.375 45.455 0.00 0.00 0.00 3.55
6693 7427 2.165301 GGCGAGTTTCGGACCGATG 61.165 63.158 19.12 6.81 40.84 3.84
6724 7458 0.455815 GGGACAGCGGGCAATTTTAG 59.544 55.000 0.00 0.00 0.00 1.85
6739 7473 5.553290 GAAGTAGAATTTGCTTCTGGGAC 57.447 43.478 9.51 0.00 44.12 4.46
6779 7513 1.079057 GTCGCCTCCTCCTTGAACC 60.079 63.158 0.00 0.00 0.00 3.62
6783 7517 3.787001 GGGGTCGCCTCCTCCTTG 61.787 72.222 0.00 0.00 0.00 3.61
6815 7549 1.172180 TTCCTTTGCTGAGGTTGCCG 61.172 55.000 5.95 0.00 38.04 5.69
6846 7580 2.093658 GGATCGTTGCCTGAAGGACTTA 60.094 50.000 0.00 0.00 37.39 2.24
6954 7688 2.747686 GACACCTTCGCCTTCCCA 59.252 61.111 0.00 0.00 0.00 4.37
7102 7836 6.438763 GTGGTCAAACTTTACAGATTTGGAG 58.561 40.000 0.00 0.00 34.70 3.86
7138 7872 8.972262 ACTATACATATAGCACACGAAATGAG 57.028 34.615 5.93 0.00 39.36 2.90
7162 7896 1.271379 ACCACACAAGCATGGGACTAC 60.271 52.381 0.00 0.00 40.59 2.73
7173 7907 4.177165 TGTACCGTATACACCACACAAG 57.823 45.455 3.32 0.00 0.00 3.16
7295 8043 3.242413 CGGGCGAGTTTGATAAACAGATG 60.242 47.826 7.13 0.00 43.79 2.90
7324 8260 4.498682 GCAAGCATGATAAACACATCCTCC 60.499 45.833 0.00 0.00 0.00 4.30
7418 8357 2.099141 AGCGATGCTGAAGTTTGCTA 57.901 45.000 0.00 0.00 37.57 3.49
7433 8372 2.301346 TCAGAGTATGAGATGCAGCGA 58.699 47.619 0.00 0.00 32.77 4.93
7463 8411 7.277174 TGATAAGAGCGATGAGAAGTGATAA 57.723 36.000 0.00 0.00 0.00 1.75
7472 8427 6.259608 ACTTGGAAATTGATAAGAGCGATGAG 59.740 38.462 0.00 0.00 0.00 2.90
7475 8430 5.220931 GCACTTGGAAATTGATAAGAGCGAT 60.221 40.000 0.00 0.00 29.79 4.58
7477 8432 4.095483 AGCACTTGGAAATTGATAAGAGCG 59.905 41.667 10.33 0.00 40.22 5.03
7498 8467 2.738013 AGTAGTACAACCGTGGAAGC 57.262 50.000 2.52 0.00 0.00 3.86
7514 8506 9.498176 GAGTACAAAGGTGGAAATAAGAAAGTA 57.502 33.333 0.00 0.00 0.00 2.24
7515 8507 8.218488 AGAGTACAAAGGTGGAAATAAGAAAGT 58.782 33.333 0.00 0.00 0.00 2.66
7516 8508 8.622948 AGAGTACAAAGGTGGAAATAAGAAAG 57.377 34.615 0.00 0.00 0.00 2.62
7517 8509 8.846211 CAAGAGTACAAAGGTGGAAATAAGAAA 58.154 33.333 0.00 0.00 0.00 2.52
7519 8511 6.430000 GCAAGAGTACAAAGGTGGAAATAAGA 59.570 38.462 0.00 0.00 0.00 2.10
7520 8512 6.206634 TGCAAGAGTACAAAGGTGGAAATAAG 59.793 38.462 0.00 0.00 0.00 1.73
7521 8513 6.016610 GTGCAAGAGTACAAAGGTGGAAATAA 60.017 38.462 0.00 0.00 0.00 1.40
7522 8514 5.472137 GTGCAAGAGTACAAAGGTGGAAATA 59.528 40.000 0.00 0.00 0.00 1.40
7523 8515 4.278419 GTGCAAGAGTACAAAGGTGGAAAT 59.722 41.667 0.00 0.00 0.00 2.17
7525 8517 3.118038 AGTGCAAGAGTACAAAGGTGGAA 60.118 43.478 0.00 0.00 32.20 3.53
7527 8519 2.808543 GAGTGCAAGAGTACAAAGGTGG 59.191 50.000 0.00 0.00 32.20 4.61
7528 8520 2.476619 CGAGTGCAAGAGTACAAAGGTG 59.523 50.000 0.00 0.00 32.20 4.00
7529 8521 2.102588 ACGAGTGCAAGAGTACAAAGGT 59.897 45.455 0.00 0.00 32.20 3.50
7531 8523 3.777807 CACGAGTGCAAGAGTACAAAG 57.222 47.619 0.00 0.00 32.20 2.77
7544 8536 3.865929 AACTCCGGCAGCACGAGTG 62.866 63.158 12.98 0.00 35.47 3.51
7545 8537 3.165160 AAACTCCGGCAGCACGAGT 62.165 57.895 7.62 7.62 35.47 4.18
7546 8538 2.357517 AAACTCCGGCAGCACGAG 60.358 61.111 0.00 6.45 35.47 4.18
7547 8539 2.357034 GAAACTCCGGCAGCACGA 60.357 61.111 0.00 0.00 35.47 4.35
7568 8560 3.671411 ACGACGACAAGAGGCGCT 61.671 61.111 7.64 0.00 0.00 5.92
7571 8563 1.992170 ATTACACGACGACAAGAGGC 58.008 50.000 0.00 0.00 0.00 4.70
7572 8564 2.092211 GCAATTACACGACGACAAGAGG 59.908 50.000 0.00 0.00 0.00 3.69
7576 8568 1.768510 TCGCAATTACACGACGACAA 58.231 45.000 0.00 0.00 32.45 3.18
7587 8579 4.094294 GCTTCAATACAGGTGTCGCAATTA 59.906 41.667 0.00 0.00 0.00 1.40
7589 8581 2.420022 GCTTCAATACAGGTGTCGCAAT 59.580 45.455 0.00 0.00 0.00 3.56
7593 8585 1.394917 GCAGCTTCAATACAGGTGTCG 59.605 52.381 1.48 0.00 41.08 4.35
7594 8586 1.394917 CGCAGCTTCAATACAGGTGTC 59.605 52.381 1.48 0.00 41.08 3.67
7598 8590 0.654683 GCTCGCAGCTTCAATACAGG 59.345 55.000 0.00 0.00 38.45 4.00
7604 8596 0.534877 TTCAAGGCTCGCAGCTTCAA 60.535 50.000 7.85 0.00 41.99 2.69
7607 8599 1.673665 CCTTCAAGGCTCGCAGCTT 60.674 57.895 0.00 0.00 41.99 3.74
7612 8604 2.436824 GGGACCTTCAAGGCTCGC 60.437 66.667 2.20 5.40 39.63 5.03
7628 8620 1.287425 GTACGGAAAAGATCTGGCGG 58.713 55.000 0.00 0.00 38.87 6.13
7631 8623 2.955614 ACACGTACGGAAAAGATCTGG 58.044 47.619 21.06 0.00 38.87 3.86
7633 8625 2.735134 GCAACACGTACGGAAAAGATCT 59.265 45.455 21.06 0.00 0.00 2.75
7637 8629 1.595794 AGTGCAACACGTACGGAAAAG 59.404 47.619 21.06 6.43 41.43 2.27
7638 8630 1.328069 CAGTGCAACACGTACGGAAAA 59.672 47.619 21.06 0.00 41.43 2.29
7641 8633 1.300311 CCAGTGCAACACGTACGGA 60.300 57.895 21.06 0.00 41.43 4.69
7644 8636 3.725819 TGCCAGTGCAACACGTAC 58.274 55.556 0.00 0.00 46.66 3.67
7661 8653 6.377996 TGTTTCAAGGCTAGATACAATGCAAT 59.622 34.615 0.00 0.00 0.00 3.56
7662 8654 5.709631 TGTTTCAAGGCTAGATACAATGCAA 59.290 36.000 0.00 0.00 0.00 4.08
7663 8655 5.252547 TGTTTCAAGGCTAGATACAATGCA 58.747 37.500 0.00 0.00 0.00 3.96
7664 8656 5.818136 TGTTTCAAGGCTAGATACAATGC 57.182 39.130 0.00 0.00 0.00 3.56
7665 8657 6.250819 CGTTGTTTCAAGGCTAGATACAATG 58.749 40.000 0.00 10.98 38.52 2.82
7706 8698 0.243095 AGGACGACGTTGTAGAAGGC 59.757 55.000 8.83 0.00 0.00 4.35
7741 8733 9.264782 CGGACGACGTTGTATTTTAATTTATTT 57.735 29.630 8.83 0.00 37.93 1.40
7742 8734 7.426169 GCGGACGACGTTGTATTTTAATTTATT 59.574 33.333 8.83 0.00 46.52 1.40
7743 8735 6.901357 GCGGACGACGTTGTATTTTAATTTAT 59.099 34.615 8.83 0.00 46.52 1.40
7744 8736 6.090628 AGCGGACGACGTTGTATTTTAATTTA 59.909 34.615 8.83 0.00 46.52 1.40
7745 8737 5.081394 GCGGACGACGTTGTATTTTAATTT 58.919 37.500 8.83 0.00 46.52 1.82
7746 8738 4.389687 AGCGGACGACGTTGTATTTTAATT 59.610 37.500 8.83 0.00 46.52 1.40
7747 8739 3.928375 AGCGGACGACGTTGTATTTTAAT 59.072 39.130 8.83 0.00 46.52 1.40
7748 8740 3.316283 AGCGGACGACGTTGTATTTTAA 58.684 40.909 8.83 0.00 46.52 1.52
7749 8741 2.945278 AGCGGACGACGTTGTATTTTA 58.055 42.857 8.83 0.00 46.52 1.52
7750 8742 1.787012 AGCGGACGACGTTGTATTTT 58.213 45.000 8.83 0.00 46.52 1.82
7751 8743 2.634982 TAGCGGACGACGTTGTATTT 57.365 45.000 8.83 0.00 46.52 1.40
7752 8744 2.857592 ATAGCGGACGACGTTGTATT 57.142 45.000 8.83 0.00 46.52 1.89
7764 8756 6.174049 CCGATGGATAGAGATATATAGCGGA 58.826 44.000 0.00 0.00 34.88 5.54
7767 8759 8.630054 AGAACCGATGGATAGAGATATATAGC 57.370 38.462 0.00 0.00 0.00 2.97
7776 8815 3.633235 CACGAAGAACCGATGGATAGAG 58.367 50.000 0.00 0.00 0.00 2.43
7778 8817 2.128035 GCACGAAGAACCGATGGATAG 58.872 52.381 0.00 0.00 0.00 2.08
8222 9271 4.647615 CCGCGGTAGATGCCCTCG 62.648 72.222 19.50 0.00 0.00 4.63
8259 9308 2.577059 GAACGACATCGGCAGGGA 59.423 61.111 6.21 0.00 44.95 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.