Multiple sequence alignment - TraesCS3D01G368600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G368600 chr3D 100.000 2444 0 0 1 2444 481877036 481879479 0.000000e+00 4514.0
1 TraesCS3D01G368600 chr3D 86.517 89 10 2 1835 1923 550276400 550276314 2.000000e-16 97.1
2 TraesCS3D01G368600 chr3A 89.362 1222 60 25 535 1700 625038579 625039786 0.000000e+00 1472.0
3 TraesCS3D01G368600 chr3A 92.340 483 31 6 1961 2442 522997967 522998444 0.000000e+00 682.0
4 TraesCS3D01G368600 chr3B 93.189 969 41 7 535 1495 644016062 644017013 0.000000e+00 1400.0
5 TraesCS3D01G368600 chr3B 93.416 486 26 5 1961 2444 19754011 19754492 0.000000e+00 715.0
6 TraesCS3D01G368600 chr3B 93.416 486 26 5 1961 2444 19782163 19782644 0.000000e+00 715.0
7 TraesCS3D01G368600 chr3B 80.655 336 31 15 1509 1816 644017216 644017545 1.890000e-56 230.0
8 TraesCS3D01G368600 chr3B 96.226 106 3 1 1961 2065 19753519 19753624 3.230000e-39 172.0
9 TraesCS3D01G368600 chr2B 94.606 482 22 4 1961 2439 314673965 314674445 0.000000e+00 743.0
10 TraesCS3D01G368600 chrUn 93.416 486 26 5 1961 2444 304896094 304895613 0.000000e+00 715.0
11 TraesCS3D01G368600 chr7D 92.990 485 19 7 1961 2444 400939266 400939736 0.000000e+00 693.0
12 TraesCS3D01G368600 chr1A 91.042 480 31 6 1966 2444 48770335 48769867 2.650000e-179 638.0
13 TraesCS3D01G368600 chr7B 93.175 337 17 6 2060 2393 748216112 748216445 7.850000e-135 490.0
14 TraesCS3D01G368600 chr6A 92.476 319 19 5 2128 2444 534926036 534926351 3.710000e-123 451.0
15 TraesCS3D01G368600 chr6A 93.678 174 10 1 1961 2134 534925787 534925959 2.410000e-65 259.0
16 TraesCS3D01G368600 chr7A 82.698 341 51 7 8 346 394830543 394830877 1.840000e-76 296.0
17 TraesCS3D01G368600 chr7A 81.003 379 45 12 1 359 77491574 77491203 2.390000e-70 276.0
18 TraesCS3D01G368600 chr4A 92.308 117 9 0 1700 1816 572502395 572502279 1.500000e-37 167.0
19 TraesCS3D01G368600 chr4A 100.000 28 0 0 1702 1729 46292656 46292629 4.000000e-03 52.8
20 TraesCS3D01G368600 chr1D 81.061 132 21 2 217 348 349090976 349091103 4.300000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G368600 chr3D 481877036 481879479 2443 False 4514.0 4514 100.000 1 2444 1 chr3D.!!$F1 2443
1 TraesCS3D01G368600 chr3A 625038579 625039786 1207 False 1472.0 1472 89.362 535 1700 1 chr3A.!!$F2 1165
2 TraesCS3D01G368600 chr3B 644016062 644017545 1483 False 815.0 1400 86.922 535 1816 2 chr3B.!!$F3 1281
3 TraesCS3D01G368600 chr3B 19753519 19754492 973 False 443.5 715 94.821 1961 2444 2 chr3B.!!$F2 483
4 TraesCS3D01G368600 chr6A 534925787 534926351 564 False 355.0 451 93.077 1961 2444 2 chr6A.!!$F1 483

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 258 0.033781 CCTTCACGTACCACCGGAAA 59.966 55.0 9.46 0.0 0.0 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1508 1754 0.034059 GGTGCATATGCCTCGCTAGT 59.966 55.0 24.54 0.0 41.18 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.330766 CCTAGTGGCGTCTTCTTCG 57.669 57.895 0.00 0.00 0.00 3.79
31 32 0.978385 CGTCTTCTTCGCTGAACTCG 59.022 55.000 0.00 0.00 0.00 4.18
32 33 1.663445 CGTCTTCTTCGCTGAACTCGT 60.663 52.381 0.00 0.00 0.00 4.18
33 34 1.980156 GTCTTCTTCGCTGAACTCGTC 59.020 52.381 0.00 0.00 0.00 4.20
34 35 0.978385 CTTCTTCGCTGAACTCGTCG 59.022 55.000 0.00 0.00 0.00 5.12
35 36 0.309922 TTCTTCGCTGAACTCGTCGT 59.690 50.000 0.00 0.00 0.00 4.34
36 37 0.110328 TCTTCGCTGAACTCGTCGTC 60.110 55.000 0.00 0.00 0.00 4.20
37 38 1.389204 CTTCGCTGAACTCGTCGTCG 61.389 60.000 0.00 0.00 38.55 5.12
38 39 2.109538 TTCGCTGAACTCGTCGTCGT 62.110 55.000 1.33 0.00 38.33 4.34
39 40 2.138601 CGCTGAACTCGTCGTCGTC 61.139 63.158 1.33 0.00 38.33 4.20
40 41 1.207085 GCTGAACTCGTCGTCGTCT 59.793 57.895 1.33 0.00 38.33 4.18
41 42 0.385723 GCTGAACTCGTCGTCGTCTT 60.386 55.000 1.33 0.00 38.33 3.01
42 43 1.136141 GCTGAACTCGTCGTCGTCTTA 60.136 52.381 1.33 0.00 38.33 2.10
43 44 2.475852 GCTGAACTCGTCGTCGTCTTAT 60.476 50.000 1.33 0.00 38.33 1.73
44 45 3.092135 CTGAACTCGTCGTCGTCTTATG 58.908 50.000 1.33 0.00 38.33 1.90
45 46 2.481568 TGAACTCGTCGTCGTCTTATGT 59.518 45.455 1.33 0.00 38.33 2.29
46 47 2.522372 ACTCGTCGTCGTCTTATGTG 57.478 50.000 1.33 0.00 38.33 3.21
47 48 1.802960 ACTCGTCGTCGTCTTATGTGT 59.197 47.619 1.33 0.00 38.33 3.72
48 49 2.166799 CTCGTCGTCGTCTTATGTGTG 58.833 52.381 1.33 0.00 38.33 3.82
49 50 1.135888 TCGTCGTCGTCTTATGTGTGG 60.136 52.381 1.33 0.00 38.33 4.17
50 51 0.989890 GTCGTCGTCTTATGTGTGGC 59.010 55.000 0.00 0.00 0.00 5.01
51 52 0.599060 TCGTCGTCTTATGTGTGGCA 59.401 50.000 0.00 0.00 0.00 4.92
52 53 0.992072 CGTCGTCTTATGTGTGGCAG 59.008 55.000 0.00 0.00 0.00 4.85
53 54 1.402325 CGTCGTCTTATGTGTGGCAGA 60.402 52.381 0.00 0.00 0.00 4.26
54 55 2.735444 CGTCGTCTTATGTGTGGCAGAT 60.735 50.000 0.00 0.00 0.00 2.90
55 56 2.860735 GTCGTCTTATGTGTGGCAGATC 59.139 50.000 0.00 0.00 0.00 2.75
56 57 1.854743 CGTCTTATGTGTGGCAGATCG 59.145 52.381 0.00 0.00 0.00 3.69
57 58 1.594862 GTCTTATGTGTGGCAGATCGC 59.405 52.381 0.00 1.55 41.28 4.58
58 59 0.578683 CTTATGTGTGGCAGATCGCG 59.421 55.000 0.00 0.00 43.84 5.87
59 60 0.809636 TTATGTGTGGCAGATCGCGG 60.810 55.000 6.13 0.00 43.84 6.46
66 67 4.210304 GCAGATCGCGGCGTTGTC 62.210 66.667 22.90 17.60 0.00 3.18
67 68 3.902063 CAGATCGCGGCGTTGTCG 61.902 66.667 22.90 3.10 40.37 4.35
92 93 4.974989 GGGGCCGTCGTCGTGTTT 62.975 66.667 0.00 0.00 35.01 2.83
93 94 3.708734 GGGCCGTCGTCGTGTTTG 61.709 66.667 0.00 0.00 35.01 2.93
94 95 2.963320 GGCCGTCGTCGTGTTTGT 60.963 61.111 0.71 0.00 35.01 2.83
95 96 2.527867 GGCCGTCGTCGTGTTTGTT 61.528 57.895 0.71 0.00 35.01 2.83
96 97 1.367195 GCCGTCGTCGTGTTTGTTG 60.367 57.895 0.71 0.00 35.01 3.33
97 98 1.367195 CCGTCGTCGTGTTTGTTGC 60.367 57.895 0.71 0.00 35.01 4.17
98 99 1.367195 CGTCGTCGTGTTTGTTGCC 60.367 57.895 0.00 0.00 0.00 4.52
99 100 1.367195 GTCGTCGTGTTTGTTGCCG 60.367 57.895 0.00 0.00 0.00 5.69
100 101 1.810441 TCGTCGTGTTTGTTGCCGT 60.810 52.632 0.00 0.00 0.00 5.68
101 102 1.367195 CGTCGTGTTTGTTGCCGTC 60.367 57.895 0.00 0.00 0.00 4.79
102 103 1.758319 CGTCGTGTTTGTTGCCGTCT 61.758 55.000 0.00 0.00 0.00 4.18
103 104 0.315869 GTCGTGTTTGTTGCCGTCTG 60.316 55.000 0.00 0.00 0.00 3.51
104 105 1.654137 CGTGTTTGTTGCCGTCTGC 60.654 57.895 0.00 0.00 41.77 4.26
105 106 1.654137 GTGTTTGTTGCCGTCTGCG 60.654 57.895 0.00 0.00 45.60 5.18
106 107 2.725815 GTTTGTTGCCGTCTGCGC 60.726 61.111 0.00 0.00 45.60 6.09
107 108 3.959975 TTTGTTGCCGTCTGCGCC 61.960 61.111 4.18 0.00 45.60 6.53
123 124 4.383602 CCGTTGTCGCCGCCTTTG 62.384 66.667 0.00 0.00 35.54 2.77
124 125 3.342627 CGTTGTCGCCGCCTTTGA 61.343 61.111 0.00 0.00 0.00 2.69
125 126 2.887889 CGTTGTCGCCGCCTTTGAA 61.888 57.895 0.00 0.00 0.00 2.69
126 127 1.082104 GTTGTCGCCGCCTTTGAAG 60.082 57.895 0.00 0.00 0.00 3.02
127 128 2.903547 TTGTCGCCGCCTTTGAAGC 61.904 57.895 0.00 0.00 0.00 3.86
134 135 4.467062 GCCTTTGAAGCGCTCGCC 62.467 66.667 12.06 3.62 43.17 5.54
135 136 4.152625 CCTTTGAAGCGCTCGCCG 62.153 66.667 12.06 0.00 43.17 6.46
136 137 3.112075 CTTTGAAGCGCTCGCCGA 61.112 61.111 12.06 0.00 43.17 5.54
137 138 3.076296 CTTTGAAGCGCTCGCCGAG 62.076 63.158 12.06 10.36 43.17 4.63
166 167 4.143333 CGTCGCCCCGTTCCTCAT 62.143 66.667 0.00 0.00 0.00 2.90
167 168 2.202892 GTCGCCCCGTTCCTCATC 60.203 66.667 0.00 0.00 0.00 2.92
168 169 3.467226 TCGCCCCGTTCCTCATCC 61.467 66.667 0.00 0.00 0.00 3.51
169 170 3.470888 CGCCCCGTTCCTCATCCT 61.471 66.667 0.00 0.00 0.00 3.24
170 171 2.131709 CGCCCCGTTCCTCATCCTA 61.132 63.158 0.00 0.00 0.00 2.94
171 172 1.472662 CGCCCCGTTCCTCATCCTAT 61.473 60.000 0.00 0.00 0.00 2.57
172 173 0.321996 GCCCCGTTCCTCATCCTATC 59.678 60.000 0.00 0.00 0.00 2.08
173 174 0.977395 CCCCGTTCCTCATCCTATCC 59.023 60.000 0.00 0.00 0.00 2.59
174 175 0.603569 CCCGTTCCTCATCCTATCCG 59.396 60.000 0.00 0.00 0.00 4.18
175 176 0.038159 CCGTTCCTCATCCTATCCGC 60.038 60.000 0.00 0.00 0.00 5.54
176 177 0.038159 CGTTCCTCATCCTATCCGCC 60.038 60.000 0.00 0.00 0.00 6.13
177 178 1.048601 GTTCCTCATCCTATCCGCCA 58.951 55.000 0.00 0.00 0.00 5.69
178 179 1.625818 GTTCCTCATCCTATCCGCCAT 59.374 52.381 0.00 0.00 0.00 4.40
179 180 1.269958 TCCTCATCCTATCCGCCATG 58.730 55.000 0.00 0.00 0.00 3.66
180 181 0.251354 CCTCATCCTATCCGCCATGG 59.749 60.000 7.63 7.63 40.09 3.66
181 182 0.392193 CTCATCCTATCCGCCATGGC 60.392 60.000 27.67 27.67 37.80 4.40
182 183 0.837691 TCATCCTATCCGCCATGGCT 60.838 55.000 33.07 18.25 39.32 4.75
183 184 0.392193 CATCCTATCCGCCATGGCTC 60.392 60.000 33.07 7.26 39.32 4.70
184 185 1.892819 ATCCTATCCGCCATGGCTCG 61.893 60.000 33.07 22.69 39.32 5.03
185 186 2.737180 CTATCCGCCATGGCTCGT 59.263 61.111 33.07 20.21 39.32 4.18
186 187 1.373497 CTATCCGCCATGGCTCGTC 60.373 63.158 33.07 5.66 39.32 4.20
187 188 2.771763 CTATCCGCCATGGCTCGTCC 62.772 65.000 33.07 4.87 39.32 4.79
194 195 4.827087 ATGGCTCGTCCGCAGCAG 62.827 66.667 11.30 0.00 38.77 4.24
197 198 4.427661 GCTCGTCCGCAGCAGAGT 62.428 66.667 0.00 0.00 36.82 3.24
198 199 2.259818 CTCGTCCGCAGCAGAGTT 59.740 61.111 0.00 0.00 0.00 3.01
199 200 1.506718 CTCGTCCGCAGCAGAGTTA 59.493 57.895 0.00 0.00 0.00 2.24
200 201 0.524392 CTCGTCCGCAGCAGAGTTAG 60.524 60.000 0.00 0.00 0.00 2.34
201 202 0.958876 TCGTCCGCAGCAGAGTTAGA 60.959 55.000 0.00 0.00 0.00 2.10
202 203 0.101399 CGTCCGCAGCAGAGTTAGAT 59.899 55.000 0.00 0.00 0.00 1.98
203 204 1.565305 GTCCGCAGCAGAGTTAGATG 58.435 55.000 0.00 0.00 0.00 2.90
204 205 0.179100 TCCGCAGCAGAGTTAGATGC 60.179 55.000 0.00 0.00 44.36 3.91
207 208 0.649475 GCAGCAGAGTTAGATGCACG 59.351 55.000 0.00 0.00 46.81 5.34
208 209 0.649475 CAGCAGAGTTAGATGCACGC 59.351 55.000 0.00 0.00 45.01 5.34
209 210 0.460987 AGCAGAGTTAGATGCACGCC 60.461 55.000 0.00 0.00 45.01 5.68
210 211 1.756375 GCAGAGTTAGATGCACGCCG 61.756 60.000 0.00 0.00 42.11 6.46
211 212 0.179137 CAGAGTTAGATGCACGCCGA 60.179 55.000 0.00 0.00 0.00 5.54
212 213 0.747255 AGAGTTAGATGCACGCCGAT 59.253 50.000 0.00 0.00 0.00 4.18
213 214 1.132588 GAGTTAGATGCACGCCGATC 58.867 55.000 0.00 0.00 0.00 3.69
214 215 0.249489 AGTTAGATGCACGCCGATCC 60.249 55.000 0.00 0.00 0.00 3.36
215 216 0.529773 GTTAGATGCACGCCGATCCA 60.530 55.000 0.00 0.00 0.00 3.41
216 217 0.529773 TTAGATGCACGCCGATCCAC 60.530 55.000 0.00 0.00 0.00 4.02
217 218 1.671901 TAGATGCACGCCGATCCACA 61.672 55.000 0.00 0.00 0.00 4.17
218 219 2.813179 GATGCACGCCGATCCACAC 61.813 63.158 0.00 0.00 0.00 3.82
221 222 2.736995 CACGCCGATCCACACGTT 60.737 61.111 0.00 0.00 36.45 3.99
222 223 2.431942 ACGCCGATCCACACGTTC 60.432 61.111 0.00 0.00 34.62 3.95
223 224 3.541831 CGCCGATCCACACGTTCG 61.542 66.667 0.00 0.00 34.16 3.95
225 226 2.508439 CCGATCCACACGTTCGGG 60.508 66.667 16.12 4.31 46.06 5.14
226 227 2.508439 CGATCCACACGTTCGGGG 60.508 66.667 0.00 0.00 31.35 5.73
227 228 2.975536 GATCCACACGTTCGGGGA 59.024 61.111 0.00 0.00 0.00 4.81
228 229 1.447314 GATCCACACGTTCGGGGAC 60.447 63.158 0.00 0.00 31.04 4.46
247 248 3.751246 CCGTCGCCCCTTCACGTA 61.751 66.667 0.00 0.00 0.00 3.57
248 249 2.505557 CGTCGCCCCTTCACGTAC 60.506 66.667 0.00 0.00 0.00 3.67
249 250 2.125793 GTCGCCCCTTCACGTACC 60.126 66.667 0.00 0.00 0.00 3.34
250 251 2.601067 TCGCCCCTTCACGTACCA 60.601 61.111 0.00 0.00 0.00 3.25
251 252 2.433664 CGCCCCTTCACGTACCAC 60.434 66.667 0.00 0.00 0.00 4.16
252 253 2.046604 GCCCCTTCACGTACCACC 60.047 66.667 0.00 0.00 0.00 4.61
253 254 2.263540 CCCCTTCACGTACCACCG 59.736 66.667 0.00 0.00 0.00 4.94
254 255 2.263540 CCCTTCACGTACCACCGG 59.736 66.667 0.00 0.00 0.00 5.28
255 256 2.277591 CCCTTCACGTACCACCGGA 61.278 63.158 9.46 0.00 0.00 5.14
256 257 1.667151 CCTTCACGTACCACCGGAA 59.333 57.895 9.46 0.00 0.00 4.30
257 258 0.033781 CCTTCACGTACCACCGGAAA 59.966 55.000 9.46 0.00 0.00 3.13
258 259 1.540797 CCTTCACGTACCACCGGAAAA 60.541 52.381 9.46 0.00 0.00 2.29
259 260 1.528161 CTTCACGTACCACCGGAAAAC 59.472 52.381 9.46 0.00 0.00 2.43
260 261 0.249826 TCACGTACCACCGGAAAACC 60.250 55.000 9.46 0.00 0.00 3.27
261 262 0.249996 CACGTACCACCGGAAAACCT 60.250 55.000 9.46 0.00 0.00 3.50
262 263 0.033920 ACGTACCACCGGAAAACCTC 59.966 55.000 9.46 0.00 0.00 3.85
263 264 0.033781 CGTACCACCGGAAAACCTCA 59.966 55.000 9.46 0.00 0.00 3.86
264 265 1.516161 GTACCACCGGAAAACCTCAC 58.484 55.000 9.46 0.00 0.00 3.51
265 266 0.397564 TACCACCGGAAAACCTCACC 59.602 55.000 9.46 0.00 0.00 4.02
266 267 1.149627 CCACCGGAAAACCTCACCA 59.850 57.895 9.46 0.00 0.00 4.17
267 268 1.170290 CCACCGGAAAACCTCACCAC 61.170 60.000 9.46 0.00 0.00 4.16
268 269 1.149854 ACCGGAAAACCTCACCACC 59.850 57.895 9.46 0.00 0.00 4.61
269 270 1.149627 CCGGAAAACCTCACCACCA 59.850 57.895 0.00 0.00 0.00 4.17
270 271 1.170290 CCGGAAAACCTCACCACCAC 61.170 60.000 0.00 0.00 0.00 4.16
271 272 1.170290 CGGAAAACCTCACCACCACC 61.170 60.000 0.00 0.00 0.00 4.61
272 273 1.170290 GGAAAACCTCACCACCACCG 61.170 60.000 0.00 0.00 0.00 4.94
273 274 1.792118 GAAAACCTCACCACCACCGC 61.792 60.000 0.00 0.00 0.00 5.68
274 275 2.559922 AAAACCTCACCACCACCGCA 62.560 55.000 0.00 0.00 0.00 5.69
275 276 2.958578 AAACCTCACCACCACCGCAG 62.959 60.000 0.00 0.00 0.00 5.18
290 291 0.885879 CGCAGGAAAAACCCTAACCC 59.114 55.000 0.00 0.00 40.05 4.11
291 292 1.546998 CGCAGGAAAAACCCTAACCCT 60.547 52.381 0.00 0.00 40.05 4.34
292 293 2.290450 CGCAGGAAAAACCCTAACCCTA 60.290 50.000 0.00 0.00 40.05 3.53
293 294 3.353557 GCAGGAAAAACCCTAACCCTAG 58.646 50.000 0.00 0.00 40.05 3.02
294 295 3.353557 CAGGAAAAACCCTAACCCTAGC 58.646 50.000 0.00 0.00 40.05 3.42
295 296 3.010250 CAGGAAAAACCCTAACCCTAGCT 59.990 47.826 0.00 0.00 40.05 3.32
296 297 3.266254 AGGAAAAACCCTAACCCTAGCTC 59.734 47.826 0.00 0.00 40.05 4.09
297 298 3.266254 GGAAAAACCCTAACCCTAGCTCT 59.734 47.826 0.00 0.00 0.00 4.09
298 299 4.515361 GAAAAACCCTAACCCTAGCTCTC 58.485 47.826 0.00 0.00 0.00 3.20
299 300 1.777941 AACCCTAACCCTAGCTCTCG 58.222 55.000 0.00 0.00 0.00 4.04
300 301 0.924823 ACCCTAACCCTAGCTCTCGA 59.075 55.000 0.00 0.00 0.00 4.04
301 302 1.133730 ACCCTAACCCTAGCTCTCGAG 60.134 57.143 5.93 5.93 0.00 4.04
302 303 1.611519 CCTAACCCTAGCTCTCGAGG 58.388 60.000 13.56 4.50 35.17 4.63
307 308 2.026522 CCTAGCTCTCGAGGGAACG 58.973 63.158 18.81 2.07 32.18 3.95
308 309 0.464013 CCTAGCTCTCGAGGGAACGA 60.464 60.000 18.81 0.00 40.00 3.85
309 310 1.600023 CTAGCTCTCGAGGGAACGAT 58.400 55.000 18.81 0.00 41.39 3.73
310 311 1.533731 CTAGCTCTCGAGGGAACGATC 59.466 57.143 18.81 0.00 41.39 3.69
311 312 1.009449 GCTCTCGAGGGAACGATCG 60.009 63.158 18.81 14.88 41.39 3.69
312 313 1.009449 CTCTCGAGGGAACGATCGC 60.009 63.158 16.60 1.19 41.39 4.58
313 314 2.026301 CTCGAGGGAACGATCGCC 59.974 66.667 16.60 9.27 41.39 5.54
314 315 2.439701 TCGAGGGAACGATCGCCT 60.440 61.111 16.60 13.96 39.23 5.52
315 316 2.005960 CTCGAGGGAACGATCGCCTT 62.006 60.000 16.60 5.46 41.39 4.35
316 317 1.878522 CGAGGGAACGATCGCCTTG 60.879 63.158 16.60 13.59 39.23 3.61
317 318 2.125106 AGGGAACGATCGCCTTGC 60.125 61.111 16.60 8.26 39.23 4.01
329 330 2.436646 CCTTGCGGTCGCCTCAAT 60.437 61.111 12.94 0.00 41.09 2.57
330 331 2.464459 CCTTGCGGTCGCCTCAATC 61.464 63.158 12.94 0.00 41.09 2.67
331 332 2.802667 CTTGCGGTCGCCTCAATCG 61.803 63.158 12.94 0.00 41.09 3.34
334 335 4.514577 CGGTCGCCTCAATCGCCT 62.515 66.667 0.00 0.00 0.00 5.52
335 336 2.586357 GGTCGCCTCAATCGCCTC 60.586 66.667 0.00 0.00 0.00 4.70
336 337 2.496817 GTCGCCTCAATCGCCTCT 59.503 61.111 0.00 0.00 0.00 3.69
337 338 1.590259 GTCGCCTCAATCGCCTCTC 60.590 63.158 0.00 0.00 0.00 3.20
338 339 2.279784 CGCCTCAATCGCCTCTCC 60.280 66.667 0.00 0.00 0.00 3.71
339 340 2.279784 GCCTCAATCGCCTCTCCG 60.280 66.667 0.00 0.00 0.00 4.63
340 341 3.082579 GCCTCAATCGCCTCTCCGT 62.083 63.158 0.00 0.00 0.00 4.69
341 342 1.227089 CCTCAATCGCCTCTCCGTG 60.227 63.158 0.00 0.00 0.00 4.94
342 343 1.513158 CTCAATCGCCTCTCCGTGT 59.487 57.895 0.00 0.00 0.00 4.49
343 344 0.108615 CTCAATCGCCTCTCCGTGTT 60.109 55.000 0.00 0.00 0.00 3.32
344 345 0.320374 TCAATCGCCTCTCCGTGTTT 59.680 50.000 0.00 0.00 0.00 2.83
345 346 1.156736 CAATCGCCTCTCCGTGTTTT 58.843 50.000 0.00 0.00 0.00 2.43
346 347 1.535462 CAATCGCCTCTCCGTGTTTTT 59.465 47.619 0.00 0.00 0.00 1.94
347 348 1.439679 ATCGCCTCTCCGTGTTTTTC 58.560 50.000 0.00 0.00 0.00 2.29
348 349 0.105224 TCGCCTCTCCGTGTTTTTCA 59.895 50.000 0.00 0.00 0.00 2.69
349 350 1.156736 CGCCTCTCCGTGTTTTTCAT 58.843 50.000 0.00 0.00 0.00 2.57
350 351 1.128692 CGCCTCTCCGTGTTTTTCATC 59.871 52.381 0.00 0.00 0.00 2.92
351 352 2.427506 GCCTCTCCGTGTTTTTCATCT 58.572 47.619 0.00 0.00 0.00 2.90
352 353 3.596214 GCCTCTCCGTGTTTTTCATCTA 58.404 45.455 0.00 0.00 0.00 1.98
353 354 3.371285 GCCTCTCCGTGTTTTTCATCTAC 59.629 47.826 0.00 0.00 0.00 2.59
354 355 3.612860 CCTCTCCGTGTTTTTCATCTACG 59.387 47.826 0.00 0.00 34.78 3.51
355 356 4.235360 CTCTCCGTGTTTTTCATCTACGT 58.765 43.478 0.00 0.00 33.28 3.57
356 357 3.985279 TCTCCGTGTTTTTCATCTACGTG 59.015 43.478 0.00 0.00 33.28 4.49
357 358 3.061322 TCCGTGTTTTTCATCTACGTGG 58.939 45.455 0.00 0.00 33.28 4.94
358 359 2.803956 CCGTGTTTTTCATCTACGTGGT 59.196 45.455 0.00 0.00 33.28 4.16
359 360 3.249080 CCGTGTTTTTCATCTACGTGGTT 59.751 43.478 0.00 0.00 33.28 3.67
360 361 4.208355 CGTGTTTTTCATCTACGTGGTTG 58.792 43.478 0.00 0.00 0.00 3.77
361 362 4.260456 CGTGTTTTTCATCTACGTGGTTGT 60.260 41.667 9.45 0.00 0.00 3.32
362 363 5.575019 GTGTTTTTCATCTACGTGGTTGTT 58.425 37.500 9.45 0.00 0.00 2.83
363 364 5.454232 GTGTTTTTCATCTACGTGGTTGTTG 59.546 40.000 9.45 0.02 0.00 3.33
364 365 5.124138 TGTTTTTCATCTACGTGGTTGTTGT 59.876 36.000 9.45 0.00 0.00 3.32
365 366 4.804608 TTTCATCTACGTGGTTGTTGTG 57.195 40.909 9.45 0.00 0.00 3.33
366 367 2.761559 TCATCTACGTGGTTGTTGTGG 58.238 47.619 9.45 0.00 0.00 4.17
367 368 1.196808 CATCTACGTGGTTGTTGTGGC 59.803 52.381 0.00 0.00 0.00 5.01
368 369 0.178301 TCTACGTGGTTGTTGTGGCA 59.822 50.000 0.00 0.00 0.00 4.92
369 370 1.202710 TCTACGTGGTTGTTGTGGCAT 60.203 47.619 0.00 0.00 0.00 4.40
370 371 0.947960 TACGTGGTTGTTGTGGCATG 59.052 50.000 0.00 0.00 0.00 4.06
371 372 1.034838 ACGTGGTTGTTGTGGCATGT 61.035 50.000 0.00 0.00 0.00 3.21
372 373 0.317770 CGTGGTTGTTGTGGCATGTC 60.318 55.000 0.00 0.00 0.00 3.06
373 374 1.032014 GTGGTTGTTGTGGCATGTCT 58.968 50.000 0.00 0.00 0.00 3.41
374 375 2.226330 GTGGTTGTTGTGGCATGTCTA 58.774 47.619 0.00 0.00 0.00 2.59
375 376 2.621055 GTGGTTGTTGTGGCATGTCTAA 59.379 45.455 0.00 0.00 0.00 2.10
376 377 3.067461 GTGGTTGTTGTGGCATGTCTAAA 59.933 43.478 0.00 0.00 0.00 1.85
377 378 3.317711 TGGTTGTTGTGGCATGTCTAAAG 59.682 43.478 0.00 0.00 0.00 1.85
378 379 3.317993 GGTTGTTGTGGCATGTCTAAAGT 59.682 43.478 0.00 0.00 0.00 2.66
379 380 4.290155 GTTGTTGTGGCATGTCTAAAGTG 58.710 43.478 0.00 0.00 0.00 3.16
380 381 2.884012 TGTTGTGGCATGTCTAAAGTGG 59.116 45.455 0.00 0.00 0.00 4.00
381 382 1.533625 TGTGGCATGTCTAAAGTGGC 58.466 50.000 0.00 0.00 38.72 5.01
382 383 0.811281 GTGGCATGTCTAAAGTGGCC 59.189 55.000 0.00 0.00 41.70 5.36
383 384 0.323360 TGGCATGTCTAAAGTGGCCC 60.323 55.000 0.00 0.00 40.64 5.80
384 385 0.034089 GGCATGTCTAAAGTGGCCCT 60.034 55.000 0.00 0.00 35.42 5.19
385 386 1.098050 GCATGTCTAAAGTGGCCCTG 58.902 55.000 0.00 0.00 0.00 4.45
386 387 1.614317 GCATGTCTAAAGTGGCCCTGT 60.614 52.381 0.00 0.00 0.00 4.00
387 388 2.795329 CATGTCTAAAGTGGCCCTGTT 58.205 47.619 0.00 0.00 0.00 3.16
388 389 3.872240 GCATGTCTAAAGTGGCCCTGTTA 60.872 47.826 0.00 0.00 0.00 2.41
389 390 4.331968 CATGTCTAAAGTGGCCCTGTTAA 58.668 43.478 0.00 0.00 0.00 2.01
390 391 4.015872 TGTCTAAAGTGGCCCTGTTAAG 57.984 45.455 0.00 0.00 0.00 1.85
391 392 3.393278 TGTCTAAAGTGGCCCTGTTAAGT 59.607 43.478 0.00 0.00 0.00 2.24
392 393 4.141344 TGTCTAAAGTGGCCCTGTTAAGTT 60.141 41.667 0.00 0.00 0.00 2.66
393 394 5.072058 TGTCTAAAGTGGCCCTGTTAAGTTA 59.928 40.000 0.00 0.00 0.00 2.24
394 395 5.410746 GTCTAAAGTGGCCCTGTTAAGTTAC 59.589 44.000 0.00 0.00 0.00 2.50
395 396 2.467566 AGTGGCCCTGTTAAGTTACG 57.532 50.000 0.00 0.00 0.00 3.18
396 397 1.972795 AGTGGCCCTGTTAAGTTACGA 59.027 47.619 0.00 0.00 0.00 3.43
397 398 2.570302 AGTGGCCCTGTTAAGTTACGAT 59.430 45.455 0.00 0.00 0.00 3.73
398 399 3.770933 AGTGGCCCTGTTAAGTTACGATA 59.229 43.478 0.00 0.00 0.00 2.92
399 400 4.117685 GTGGCCCTGTTAAGTTACGATAG 58.882 47.826 0.00 0.00 46.19 2.08
400 401 3.129109 GGCCCTGTTAAGTTACGATAGC 58.871 50.000 0.00 0.00 42.67 2.97
401 402 2.793232 GCCCTGTTAAGTTACGATAGCG 59.207 50.000 0.00 0.00 44.79 4.26
417 418 2.052237 CGTTCGCGCTGCTTTTGT 60.052 55.556 5.56 0.00 0.00 2.83
418 419 2.349376 CGTTCGCGCTGCTTTTGTG 61.349 57.895 5.56 0.00 0.00 3.33
419 420 1.298339 GTTCGCGCTGCTTTTGTGT 60.298 52.632 5.56 0.00 0.00 3.72
420 421 0.865639 GTTCGCGCTGCTTTTGTGTT 60.866 50.000 5.56 0.00 0.00 3.32
421 422 0.865218 TTCGCGCTGCTTTTGTGTTG 60.865 50.000 5.56 0.00 0.00 3.33
422 423 2.919860 CGCGCTGCTTTTGTGTTGC 61.920 57.895 5.56 0.00 0.00 4.17
423 424 2.919860 GCGCTGCTTTTGTGTTGCG 61.920 57.895 0.00 0.00 45.12 4.85
424 425 2.919860 CGCTGCTTTTGTGTTGCGC 61.920 57.895 0.00 0.00 37.13 6.09
425 426 2.588585 GCTGCTTTTGTGTTGCGCC 61.589 57.895 4.18 0.00 0.00 6.53
426 427 1.226916 CTGCTTTTGTGTTGCGCCA 60.227 52.632 4.18 0.00 0.00 5.69
427 428 0.805322 CTGCTTTTGTGTTGCGCCAA 60.805 50.000 4.18 0.00 0.00 4.52
428 429 0.805322 TGCTTTTGTGTTGCGCCAAG 60.805 50.000 4.18 0.00 0.00 3.61
429 430 0.527385 GCTTTTGTGTTGCGCCAAGA 60.527 50.000 4.18 0.00 0.00 3.02
430 431 1.869342 GCTTTTGTGTTGCGCCAAGAT 60.869 47.619 4.18 0.00 0.00 2.40
431 432 1.788308 CTTTTGTGTTGCGCCAAGATG 59.212 47.619 4.18 0.00 0.00 2.90
432 433 0.597118 TTTGTGTTGCGCCAAGATGC 60.597 50.000 4.18 0.00 0.00 3.91
433 434 1.732417 TTGTGTTGCGCCAAGATGCA 61.732 50.000 4.18 0.00 39.81 3.96
434 435 1.213537 GTGTTGCGCCAAGATGCAT 59.786 52.632 4.18 0.00 41.42 3.96
435 436 1.074319 GTGTTGCGCCAAGATGCATG 61.074 55.000 2.46 0.00 41.42 4.06
436 437 2.162754 GTTGCGCCAAGATGCATGC 61.163 57.895 11.82 11.82 41.42 4.06
437 438 2.637383 TTGCGCCAAGATGCATGCA 61.637 52.632 25.04 25.04 41.42 3.96
438 439 2.581409 GCGCCAAGATGCATGCAC 60.581 61.111 25.37 16.77 0.00 4.57
439 440 2.277692 CGCCAAGATGCATGCACG 60.278 61.111 25.37 17.12 0.00 5.34
440 441 2.879907 GCCAAGATGCATGCACGT 59.120 55.556 25.37 8.32 0.00 4.49
441 442 1.515519 GCCAAGATGCATGCACGTG 60.516 57.895 25.37 22.21 0.00 4.49
442 443 1.925415 GCCAAGATGCATGCACGTGA 61.925 55.000 25.37 4.80 0.00 4.35
443 444 0.736636 CCAAGATGCATGCACGTGAT 59.263 50.000 25.37 6.46 0.00 3.06
444 445 1.268386 CCAAGATGCATGCACGTGATC 60.268 52.381 25.37 16.42 0.00 2.92
445 446 1.019673 AAGATGCATGCACGTGATCC 58.980 50.000 25.37 1.56 0.00 3.36
446 447 1.156034 AGATGCATGCACGTGATCCG 61.156 55.000 25.37 4.98 44.03 4.18
447 448 1.153389 ATGCATGCACGTGATCCGA 60.153 52.632 25.37 0.00 40.70 4.55
448 449 1.431488 ATGCATGCACGTGATCCGAC 61.431 55.000 25.37 0.00 40.70 4.79
449 450 2.997869 CATGCACGTGATCCGACG 59.002 61.111 22.23 7.25 45.09 5.12
450 451 2.202743 ATGCACGTGATCCGACGG 60.203 61.111 22.23 7.84 43.84 4.79
453 454 2.431771 CACGTGATCCGACGGCAA 60.432 61.111 10.90 0.00 43.84 4.52
454 455 2.126071 ACGTGATCCGACGGCAAG 60.126 61.111 9.66 7.44 43.84 4.01
455 456 2.885644 CGTGATCCGACGGCAAGG 60.886 66.667 9.66 0.00 39.56 3.61
456 457 2.577059 GTGATCCGACGGCAAGGA 59.423 61.111 9.66 0.00 41.30 3.36
457 458 1.519455 GTGATCCGACGGCAAGGAG 60.519 63.158 9.66 0.00 40.26 3.69
458 459 2.107141 GATCCGACGGCAAGGAGG 59.893 66.667 9.66 0.00 40.26 4.30
459 460 2.363795 ATCCGACGGCAAGGAGGA 60.364 61.111 9.66 0.00 40.26 3.71
460 461 2.630592 GATCCGACGGCAAGGAGGAC 62.631 65.000 9.66 0.00 40.26 3.85
465 466 2.434359 CGGCAAGGAGGACGTTCC 60.434 66.667 0.00 0.00 33.69 3.62
475 476 2.256117 AGGACGTTCCTTGGAACTTG 57.744 50.000 24.55 15.31 46.91 3.16
476 477 0.591659 GGACGTTCCTTGGAACTTGC 59.408 55.000 24.55 18.88 32.53 4.01
477 478 1.594331 GACGTTCCTTGGAACTTGCT 58.406 50.000 24.55 8.98 33.21 3.91
478 479 2.549349 GGACGTTCCTTGGAACTTGCTA 60.549 50.000 24.55 0.00 32.53 3.49
479 480 2.479275 GACGTTCCTTGGAACTTGCTAC 59.521 50.000 24.55 5.62 33.21 3.58
480 481 2.158871 ACGTTCCTTGGAACTTGCTACA 60.159 45.455 24.55 0.00 33.21 2.74
481 482 2.875933 CGTTCCTTGGAACTTGCTACAA 59.124 45.455 24.55 0.00 33.21 2.41
482 483 3.314080 CGTTCCTTGGAACTTGCTACAAA 59.686 43.478 24.55 0.00 33.21 2.83
483 484 4.023193 CGTTCCTTGGAACTTGCTACAAAT 60.023 41.667 24.55 0.00 33.21 2.32
484 485 5.180492 CGTTCCTTGGAACTTGCTACAAATA 59.820 40.000 24.55 0.00 33.21 1.40
485 486 6.293735 CGTTCCTTGGAACTTGCTACAAATAA 60.294 38.462 24.55 0.00 33.21 1.40
486 487 6.817765 TCCTTGGAACTTGCTACAAATAAG 57.182 37.500 0.00 0.00 0.00 1.73
487 488 6.539173 TCCTTGGAACTTGCTACAAATAAGA 58.461 36.000 0.00 0.00 0.00 2.10
488 489 6.430000 TCCTTGGAACTTGCTACAAATAAGAC 59.570 38.462 0.00 0.00 0.00 3.01
489 490 5.856126 TGGAACTTGCTACAAATAAGACG 57.144 39.130 0.00 0.00 0.00 4.18
490 491 5.302360 TGGAACTTGCTACAAATAAGACGT 58.698 37.500 0.00 0.00 0.00 4.34
491 492 5.761234 TGGAACTTGCTACAAATAAGACGTT 59.239 36.000 0.00 0.00 0.00 3.99
492 493 6.073440 TGGAACTTGCTACAAATAAGACGTTC 60.073 38.462 0.00 0.00 0.00 3.95
493 494 5.511088 ACTTGCTACAAATAAGACGTTCG 57.489 39.130 0.00 0.00 0.00 3.95
494 495 4.387862 ACTTGCTACAAATAAGACGTTCGG 59.612 41.667 0.00 0.00 0.00 4.30
495 496 2.669434 TGCTACAAATAAGACGTTCGGC 59.331 45.455 0.00 0.00 0.00 5.54
496 497 2.030091 GCTACAAATAAGACGTTCGGCC 59.970 50.000 0.00 0.00 0.00 6.13
497 498 2.172851 ACAAATAAGACGTTCGGCCA 57.827 45.000 2.24 0.00 0.00 5.36
498 499 2.496111 ACAAATAAGACGTTCGGCCAA 58.504 42.857 2.24 0.00 0.00 4.52
499 500 3.078837 ACAAATAAGACGTTCGGCCAAT 58.921 40.909 2.24 0.00 0.00 3.16
500 501 4.255301 ACAAATAAGACGTTCGGCCAATA 58.745 39.130 2.24 0.00 0.00 1.90
501 502 4.879545 ACAAATAAGACGTTCGGCCAATAT 59.120 37.500 2.24 0.00 0.00 1.28
502 503 5.007332 ACAAATAAGACGTTCGGCCAATATC 59.993 40.000 2.24 0.00 0.00 1.63
503 504 2.684001 AAGACGTTCGGCCAATATCA 57.316 45.000 2.24 0.00 0.00 2.15
504 505 2.910688 AGACGTTCGGCCAATATCAT 57.089 45.000 2.24 0.00 0.00 2.45
505 506 3.194005 AGACGTTCGGCCAATATCATT 57.806 42.857 2.24 0.00 0.00 2.57
506 507 3.541632 AGACGTTCGGCCAATATCATTT 58.458 40.909 2.24 0.00 0.00 2.32
507 508 3.560068 AGACGTTCGGCCAATATCATTTC 59.440 43.478 2.24 0.00 0.00 2.17
508 509 3.541632 ACGTTCGGCCAATATCATTTCT 58.458 40.909 2.24 0.00 0.00 2.52
509 510 3.312421 ACGTTCGGCCAATATCATTTCTG 59.688 43.478 2.24 0.00 0.00 3.02
510 511 3.632189 GTTCGGCCAATATCATTTCTGC 58.368 45.455 2.24 0.00 0.00 4.26
511 512 2.929641 TCGGCCAATATCATTTCTGCA 58.070 42.857 2.24 0.00 0.00 4.41
512 513 3.489355 TCGGCCAATATCATTTCTGCAT 58.511 40.909 2.24 0.00 0.00 3.96
513 514 3.890756 TCGGCCAATATCATTTCTGCATT 59.109 39.130 2.24 0.00 0.00 3.56
514 515 4.341806 TCGGCCAATATCATTTCTGCATTT 59.658 37.500 2.24 0.00 0.00 2.32
515 516 4.682860 CGGCCAATATCATTTCTGCATTTC 59.317 41.667 2.24 0.00 0.00 2.17
516 517 4.992951 GGCCAATATCATTTCTGCATTTCC 59.007 41.667 0.00 0.00 0.00 3.13
517 518 5.221581 GGCCAATATCATTTCTGCATTTCCT 60.222 40.000 0.00 0.00 0.00 3.36
518 519 6.285990 GCCAATATCATTTCTGCATTTCCTT 58.714 36.000 0.00 0.00 0.00 3.36
519 520 6.764560 GCCAATATCATTTCTGCATTTCCTTT 59.235 34.615 0.00 0.00 0.00 3.11
520 521 7.281549 GCCAATATCATTTCTGCATTTCCTTTT 59.718 33.333 0.00 0.00 0.00 2.27
521 522 9.169592 CCAATATCATTTCTGCATTTCCTTTTT 57.830 29.630 0.00 0.00 0.00 1.94
523 524 9.947433 AATATCATTTCTGCATTTCCTTTTTCA 57.053 25.926 0.00 0.00 0.00 2.69
524 525 7.662604 ATCATTTCTGCATTTCCTTTTTCAC 57.337 32.000 0.00 0.00 0.00 3.18
525 526 6.819284 TCATTTCTGCATTTCCTTTTTCACT 58.181 32.000 0.00 0.00 0.00 3.41
526 527 7.274447 TCATTTCTGCATTTCCTTTTTCACTT 58.726 30.769 0.00 0.00 0.00 3.16
527 528 7.769970 TCATTTCTGCATTTCCTTTTTCACTTT 59.230 29.630 0.00 0.00 0.00 2.66
528 529 7.920160 TTTCTGCATTTCCTTTTTCACTTTT 57.080 28.000 0.00 0.00 0.00 2.27
529 530 7.920160 TTCTGCATTTCCTTTTTCACTTTTT 57.080 28.000 0.00 0.00 0.00 1.94
530 531 9.442047 TTTCTGCATTTCCTTTTTCACTTTTTA 57.558 25.926 0.00 0.00 0.00 1.52
531 532 9.442047 TTCTGCATTTCCTTTTTCACTTTTTAA 57.558 25.926 0.00 0.00 0.00 1.52
532 533 9.442047 TCTGCATTTCCTTTTTCACTTTTTAAA 57.558 25.926 0.00 0.00 0.00 1.52
641 651 2.203126 GAGAATCAGGCCAGCGGG 60.203 66.667 5.01 0.00 33.17 6.13
702 712 2.708325 GCTCCCCTCCACAGAATTATCT 59.292 50.000 0.00 0.00 35.88 1.98
723 734 0.101579 AAAACACTGAAAACCCCGCG 59.898 50.000 0.00 0.00 0.00 6.46
757 768 0.814010 AAGTATGGAATGGTCGCCGC 60.814 55.000 0.00 0.00 0.00 6.53
758 769 1.522806 GTATGGAATGGTCGCCGCA 60.523 57.895 0.00 0.00 0.00 5.69
759 770 1.522806 TATGGAATGGTCGCCGCAC 60.523 57.895 0.00 0.00 0.00 5.34
796 807 2.660189 GGTGAATTGCCATTGACCAG 57.340 50.000 13.29 0.00 44.10 4.00
927 957 4.521130 TCTCGAGTGCAGACATTTTACT 57.479 40.909 13.13 0.00 0.00 2.24
928 958 4.486090 TCTCGAGTGCAGACATTTTACTC 58.514 43.478 13.13 0.00 35.58 2.59
929 959 4.022329 TCTCGAGTGCAGACATTTTACTCA 60.022 41.667 13.13 0.00 38.07 3.41
930 960 4.237724 TCGAGTGCAGACATTTTACTCAG 58.762 43.478 0.00 0.00 38.07 3.35
931 961 4.022329 TCGAGTGCAGACATTTTACTCAGA 60.022 41.667 0.00 0.00 38.07 3.27
934 964 4.999950 AGTGCAGACATTTTACTCAGAAGG 59.000 41.667 0.00 0.00 0.00 3.46
969 1025 2.440569 GCACAGCTCGCTCTTCGAC 61.441 63.158 0.00 0.00 43.16 4.20
977 1033 2.289547 GCTCGCTCTTCGACTTATCTCT 59.710 50.000 0.00 0.00 43.16 3.10
979 1035 2.032302 TCGCTCTTCGACTTATCTCTGC 59.968 50.000 0.00 0.00 43.16 4.26
1454 1510 4.568152 TCAAAAGTTGAGGCTTGCTTAC 57.432 40.909 0.00 0.00 34.08 2.34
1472 1528 4.728021 GCTTACCTTGCTCTTGTAATTCGC 60.728 45.833 0.00 0.00 0.00 4.70
1517 1763 5.873179 TTTGTTGGAAATAACTAGCGAGG 57.127 39.130 0.00 0.00 0.00 4.63
1590 1836 1.702957 GCCATATGCAGGGGGTAGTAA 59.297 52.381 0.00 0.00 40.77 2.24
1591 1837 2.308866 GCCATATGCAGGGGGTAGTAAT 59.691 50.000 0.00 0.00 40.77 1.89
1720 1993 8.427774 GTCTATTTTTGCGAAAGAAAAGGATTG 58.572 33.333 0.00 0.00 40.37 2.67
1723 1996 3.940209 TGCGAAAGAAAAGGATTGCAT 57.060 38.095 0.00 0.00 0.00 3.96
1730 2003 7.063308 GCGAAAGAAAAGGATTGCATTAATCAA 59.937 33.333 0.00 3.77 45.70 2.57
1732 2005 8.782339 AAAGAAAAGGATTGCATTAATCAAGG 57.218 30.769 0.00 0.00 45.70 3.61
1744 2017 7.864686 TGCATTAATCAAGGAAGATCATTACG 58.135 34.615 0.00 0.00 0.00 3.18
1760 2033 0.824109 TACGATCCTGTTGGCAGAGG 59.176 55.000 8.07 8.07 45.28 3.69
1761 2034 1.194781 ACGATCCTGTTGGCAGAGGT 61.195 55.000 12.84 3.05 45.28 3.85
1764 2037 0.773644 ATCCTGTTGGCAGAGGTTGT 59.226 50.000 12.84 1.13 45.28 3.32
1765 2038 0.108585 TCCTGTTGGCAGAGGTTGTC 59.891 55.000 12.84 0.00 45.28 3.18
1775 2048 4.155826 TGGCAGAGGTTGTCAATTTTATCG 59.844 41.667 0.00 0.00 38.77 2.92
1780 2053 4.918588 AGGTTGTCAATTTTATCGGGTCT 58.081 39.130 0.00 0.00 0.00 3.85
1785 2058 7.913821 GGTTGTCAATTTTATCGGGTCTATTTC 59.086 37.037 0.00 0.00 0.00 2.17
1786 2059 7.241663 TGTCAATTTTATCGGGTCTATTTCG 57.758 36.000 0.00 0.00 0.00 3.46
1795 2068 2.143925 GGGTCTATTTCGCAGCCATAC 58.856 52.381 0.00 0.00 0.00 2.39
1808 2082 3.264897 CATACAGCGGTGCGAGGC 61.265 66.667 15.82 0.00 0.00 4.70
1818 2092 4.361253 TGCGAGGCACAGAGTTTC 57.639 55.556 0.00 0.00 31.71 2.78
1819 2093 1.748403 TGCGAGGCACAGAGTTTCT 59.252 52.632 0.00 0.00 31.71 2.52
1820 2094 0.106708 TGCGAGGCACAGAGTTTCTT 59.893 50.000 0.00 0.00 31.71 2.52
1821 2095 1.230324 GCGAGGCACAGAGTTTCTTT 58.770 50.000 0.00 0.00 0.00 2.52
1822 2096 1.604278 GCGAGGCACAGAGTTTCTTTT 59.396 47.619 0.00 0.00 0.00 2.27
1823 2097 2.349912 GCGAGGCACAGAGTTTCTTTTC 60.350 50.000 0.00 0.00 0.00 2.29
1824 2098 3.134458 CGAGGCACAGAGTTTCTTTTCT 58.866 45.455 0.00 0.00 0.00 2.52
1825 2099 3.059325 CGAGGCACAGAGTTTCTTTTCTG 60.059 47.826 0.27 0.27 44.93 3.02
1836 2110 7.645735 CAGAGTTTCTTTTCTGTTTTAAGAGGC 59.354 37.037 0.00 0.00 36.82 4.70
1837 2111 6.495706 AGTTTCTTTTCTGTTTTAAGAGGCG 58.504 36.000 0.00 0.00 30.32 5.52
1838 2112 4.483476 TCTTTTCTGTTTTAAGAGGCGC 57.517 40.909 0.00 0.00 0.00 6.53
1839 2113 3.880490 TCTTTTCTGTTTTAAGAGGCGCA 59.120 39.130 10.83 0.00 0.00 6.09
1840 2114 3.619233 TTTCTGTTTTAAGAGGCGCAC 57.381 42.857 10.83 2.06 0.00 5.34
1841 2115 2.248280 TCTGTTTTAAGAGGCGCACA 57.752 45.000 10.83 0.47 0.00 4.57
1842 2116 1.871039 TCTGTTTTAAGAGGCGCACAC 59.129 47.619 10.83 0.00 0.00 3.82
1843 2117 0.948678 TGTTTTAAGAGGCGCACACC 59.051 50.000 10.83 0.00 0.00 4.16
1844 2118 0.240145 GTTTTAAGAGGCGCACACCC 59.760 55.000 10.83 0.00 0.00 4.61
1845 2119 0.891904 TTTTAAGAGGCGCACACCCC 60.892 55.000 10.83 0.00 0.00 4.95
1846 2120 2.757980 TTTAAGAGGCGCACACCCCC 62.758 60.000 10.83 0.00 0.00 5.40
1876 2150 2.426023 GGCCGGCCCATACACTAG 59.574 66.667 36.64 0.00 0.00 2.57
1877 2151 2.426023 GCCGGCCCATACACTAGG 59.574 66.667 18.11 0.00 0.00 3.02
1878 2152 2.440817 GCCGGCCCATACACTAGGT 61.441 63.158 18.11 0.00 0.00 3.08
1879 2153 1.979619 GCCGGCCCATACACTAGGTT 61.980 60.000 18.11 0.00 0.00 3.50
1880 2154 0.106149 CCGGCCCATACACTAGGTTC 59.894 60.000 0.00 0.00 0.00 3.62
1881 2155 0.106149 CGGCCCATACACTAGGTTCC 59.894 60.000 0.00 0.00 0.00 3.62
1882 2156 1.508256 GGCCCATACACTAGGTTCCT 58.492 55.000 0.00 0.00 0.00 3.36
1883 2157 1.844497 GGCCCATACACTAGGTTCCTT 59.156 52.381 0.00 0.00 0.00 3.36
1884 2158 2.241430 GGCCCATACACTAGGTTCCTTT 59.759 50.000 0.00 0.00 0.00 3.11
1885 2159 3.308904 GGCCCATACACTAGGTTCCTTTT 60.309 47.826 0.00 0.00 0.00 2.27
1886 2160 3.945921 GCCCATACACTAGGTTCCTTTTC 59.054 47.826 0.00 0.00 0.00 2.29
1887 2161 4.324331 GCCCATACACTAGGTTCCTTTTCT 60.324 45.833 0.00 0.00 0.00 2.52
1888 2162 5.186198 CCCATACACTAGGTTCCTTTTCTG 58.814 45.833 0.00 0.00 0.00 3.02
1889 2163 5.280521 CCCATACACTAGGTTCCTTTTCTGT 60.281 44.000 0.00 0.00 0.00 3.41
1890 2164 6.238648 CCATACACTAGGTTCCTTTTCTGTT 58.761 40.000 0.00 0.00 0.00 3.16
1891 2165 6.715264 CCATACACTAGGTTCCTTTTCTGTTT 59.285 38.462 0.00 0.00 0.00 2.83
1892 2166 7.230712 CCATACACTAGGTTCCTTTTCTGTTTT 59.769 37.037 0.00 0.00 0.00 2.43
1893 2167 9.280174 CATACACTAGGTTCCTTTTCTGTTTTA 57.720 33.333 0.00 0.00 0.00 1.52
1894 2168 9.856162 ATACACTAGGTTCCTTTTCTGTTTTAA 57.144 29.630 0.00 0.00 0.00 1.52
1895 2169 8.221965 ACACTAGGTTCCTTTTCTGTTTTAAG 57.778 34.615 0.00 0.00 0.00 1.85
1896 2170 8.050930 ACACTAGGTTCCTTTTCTGTTTTAAGA 58.949 33.333 0.00 0.00 0.00 2.10
1897 2171 8.560374 CACTAGGTTCCTTTTCTGTTTTAAGAG 58.440 37.037 0.00 0.00 0.00 2.85
1898 2172 6.961360 AGGTTCCTTTTCTGTTTTAAGAGG 57.039 37.500 0.00 0.00 0.00 3.69
1899 2173 5.302059 AGGTTCCTTTTCTGTTTTAAGAGGC 59.698 40.000 0.00 0.00 0.00 4.70
1900 2174 5.212934 GTTCCTTTTCTGTTTTAAGAGGCG 58.787 41.667 0.00 0.00 0.00 5.52
1901 2175 3.252458 TCCTTTTCTGTTTTAAGAGGCGC 59.748 43.478 0.00 0.00 0.00 6.53
1902 2176 3.004315 CCTTTTCTGTTTTAAGAGGCGCA 59.996 43.478 10.83 0.00 0.00 6.09
1903 2177 4.499019 CCTTTTCTGTTTTAAGAGGCGCAA 60.499 41.667 10.83 0.00 0.00 4.85
1904 2178 4.640789 TTTCTGTTTTAAGAGGCGCAAA 57.359 36.364 10.83 0.00 0.00 3.68
1905 2179 4.640789 TTCTGTTTTAAGAGGCGCAAAA 57.359 36.364 10.83 3.84 0.00 2.44
1906 2180 4.640789 TCTGTTTTAAGAGGCGCAAAAA 57.359 36.364 10.83 4.80 0.00 1.94
1927 2201 3.343972 GCAAGCAGCAGGTTTCGA 58.656 55.556 0.00 0.00 44.79 3.71
1928 2202 1.654220 GCAAGCAGCAGGTTTCGAA 59.346 52.632 0.00 0.00 44.79 3.71
1929 2203 0.661483 GCAAGCAGCAGGTTTCGAAC 60.661 55.000 0.00 0.00 44.79 3.95
1938 2212 2.170273 GTTTCGAACCTGCGACGC 59.830 61.111 14.19 14.19 40.42 5.19
1939 2213 2.279584 TTTCGAACCTGCGACGCA 60.280 55.556 22.99 22.99 40.42 5.24
1940 2214 2.591311 TTTCGAACCTGCGACGCAC 61.591 57.895 20.50 8.35 40.42 5.34
1941 2215 2.964438 TTTCGAACCTGCGACGCACT 62.964 55.000 20.50 6.21 40.42 4.40
1942 2216 2.126618 CGAACCTGCGACGCACTA 60.127 61.111 20.50 0.00 33.79 2.74
1943 2217 2.152699 CGAACCTGCGACGCACTAG 61.153 63.158 20.50 13.06 33.79 2.57
1944 2218 2.432628 AACCTGCGACGCACTAGC 60.433 61.111 20.50 0.00 33.79 3.42
1945 2219 3.934391 AACCTGCGACGCACTAGCC 62.934 63.158 20.50 0.00 37.52 3.93
1946 2220 4.435436 CCTGCGACGCACTAGCCA 62.435 66.667 20.50 0.00 37.52 4.75
1947 2221 3.181967 CTGCGACGCACTAGCCAC 61.182 66.667 20.50 0.00 37.52 5.01
1948 2222 4.735132 TGCGACGCACTAGCCACC 62.735 66.667 20.50 0.00 37.52 4.61
1954 2228 2.671619 GCACTAGCCACCGCCAAA 60.672 61.111 0.00 0.00 34.57 3.28
1955 2229 2.978018 GCACTAGCCACCGCCAAAC 61.978 63.158 0.00 0.00 34.57 2.93
1956 2230 2.033602 ACTAGCCACCGCCAAACC 59.966 61.111 0.00 0.00 34.57 3.27
1957 2231 2.750237 CTAGCCACCGCCAAACCC 60.750 66.667 0.00 0.00 34.57 4.11
1958 2232 3.253838 TAGCCACCGCCAAACCCT 61.254 61.111 0.00 0.00 34.57 4.34
1959 2233 1.906105 CTAGCCACCGCCAAACCCTA 61.906 60.000 0.00 0.00 34.57 3.53
2058 2826 1.145162 AAACTGCAAAAACCTGCGCG 61.145 50.000 0.00 0.00 45.74 6.86
2113 2881 2.222886 CTCCTACTAGCTAAGCTGCGA 58.777 52.381 0.00 0.00 40.10 5.10
2150 3001 6.413269 CAAGTACTTTGCTGAAATTTGCAAC 58.587 36.000 13.72 5.51 46.91 4.17
2163 3014 9.601971 CTGAAATTTGCAACATCCTTTTTATTG 57.398 29.630 0.00 0.00 0.00 1.90
2280 3133 7.495279 CAGTGAACATTTTCCCAATTCTTGAAA 59.505 33.333 0.00 0.00 0.00 2.69
2281 3134 8.046107 AGTGAACATTTTCCCAATTCTTGAAAA 58.954 29.630 8.09 8.09 40.89 2.29
2294 3147 9.720667 CCAATTCTTGAAAATTTTCCTCAAAAC 57.279 29.630 24.51 2.27 34.24 2.43
2434 3288 7.274686 TCAAAATTCCGTGAACTCTTTTCAAAC 59.725 33.333 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.330766 CGAAGAAGACGCCACTAGG 57.669 57.895 0.00 0.00 38.23 3.02
12 13 0.978385 CGAGTTCAGCGAAGAAGACG 59.022 55.000 0.00 0.00 0.00 4.18
13 14 1.980156 GACGAGTTCAGCGAAGAAGAC 59.020 52.381 0.00 0.00 0.00 3.01
14 15 1.399855 CGACGAGTTCAGCGAAGAAGA 60.400 52.381 0.00 0.00 0.00 2.87
15 16 0.978385 CGACGAGTTCAGCGAAGAAG 59.022 55.000 0.00 0.00 0.00 2.85
16 17 0.309922 ACGACGAGTTCAGCGAAGAA 59.690 50.000 0.00 0.00 0.00 2.52
17 18 0.110328 GACGACGAGTTCAGCGAAGA 60.110 55.000 0.00 0.00 0.00 2.87
18 19 1.389204 CGACGACGAGTTCAGCGAAG 61.389 60.000 0.00 0.00 42.66 3.79
19 20 1.439858 CGACGACGAGTTCAGCGAA 60.440 57.895 0.00 0.00 42.66 4.70
20 21 2.172659 CGACGACGAGTTCAGCGA 59.827 61.111 0.00 0.00 42.66 4.93
21 22 2.127345 ACGACGACGAGTTCAGCG 60.127 61.111 15.32 0.00 42.66 5.18
22 23 0.385723 AAGACGACGACGAGTTCAGC 60.386 55.000 15.32 0.00 42.66 4.26
23 24 2.869358 TAAGACGACGACGAGTTCAG 57.131 50.000 15.32 0.00 42.66 3.02
24 25 2.481568 ACATAAGACGACGACGAGTTCA 59.518 45.455 15.32 0.00 42.66 3.18
25 26 2.839026 CACATAAGACGACGACGAGTTC 59.161 50.000 15.32 0.99 42.66 3.01
26 27 2.225019 ACACATAAGACGACGACGAGTT 59.775 45.455 15.32 8.97 42.66 3.01
27 28 1.802960 ACACATAAGACGACGACGAGT 59.197 47.619 15.32 0.37 42.66 4.18
28 29 2.166799 CACACATAAGACGACGACGAG 58.833 52.381 15.32 0.00 42.66 4.18
29 30 1.135888 CCACACATAAGACGACGACGA 60.136 52.381 15.32 0.00 42.66 4.20
30 31 1.256652 CCACACATAAGACGACGACG 58.743 55.000 5.58 5.58 45.75 5.12
31 32 0.989890 GCCACACATAAGACGACGAC 59.010 55.000 0.00 0.00 0.00 4.34
32 33 0.599060 TGCCACACATAAGACGACGA 59.401 50.000 0.00 0.00 0.00 4.20
33 34 0.992072 CTGCCACACATAAGACGACG 59.008 55.000 0.00 0.00 0.00 5.12
34 35 2.363788 TCTGCCACACATAAGACGAC 57.636 50.000 0.00 0.00 0.00 4.34
35 36 2.479560 CGATCTGCCACACATAAGACGA 60.480 50.000 0.00 0.00 0.00 4.20
36 37 1.854743 CGATCTGCCACACATAAGACG 59.145 52.381 0.00 0.00 0.00 4.18
37 38 1.594862 GCGATCTGCCACACATAAGAC 59.405 52.381 0.00 0.00 37.76 3.01
38 39 1.802508 CGCGATCTGCCACACATAAGA 60.803 52.381 0.00 0.00 42.08 2.10
39 40 0.578683 CGCGATCTGCCACACATAAG 59.421 55.000 0.00 0.00 42.08 1.73
40 41 0.809636 CCGCGATCTGCCACACATAA 60.810 55.000 8.23 0.00 42.08 1.90
41 42 1.227234 CCGCGATCTGCCACACATA 60.227 57.895 8.23 0.00 42.08 2.29
42 43 2.512286 CCGCGATCTGCCACACAT 60.512 61.111 8.23 0.00 42.08 3.21
49 50 4.210304 GACAACGCCGCGATCTGC 62.210 66.667 21.79 0.00 41.47 4.26
50 51 3.902063 CGACAACGCCGCGATCTG 61.902 66.667 21.79 15.20 0.00 2.90
75 76 4.974989 AAACACGACGACGGCCCC 62.975 66.667 12.58 0.00 44.46 5.80
76 77 3.708734 CAAACACGACGACGGCCC 61.709 66.667 12.58 0.00 44.46 5.80
77 78 2.527867 AACAAACACGACGACGGCC 61.528 57.895 12.58 0.00 44.46 6.13
78 79 1.367195 CAACAAACACGACGACGGC 60.367 57.895 12.58 0.00 44.46 5.68
79 80 1.367195 GCAACAAACACGACGACGG 60.367 57.895 12.58 3.35 44.46 4.79
80 81 1.367195 GGCAACAAACACGACGACG 60.367 57.895 5.58 5.58 45.75 5.12
81 82 1.367195 CGGCAACAAACACGACGAC 60.367 57.895 0.00 0.00 0.00 4.34
82 83 1.754436 GACGGCAACAAACACGACGA 61.754 55.000 0.00 0.00 0.00 4.20
83 84 1.367195 GACGGCAACAAACACGACG 60.367 57.895 0.00 0.00 0.00 5.12
84 85 0.315869 CAGACGGCAACAAACACGAC 60.316 55.000 0.00 0.00 0.00 4.34
85 86 2.010670 CAGACGGCAACAAACACGA 58.989 52.632 0.00 0.00 0.00 4.35
86 87 1.654137 GCAGACGGCAACAAACACG 60.654 57.895 0.00 0.00 43.97 4.49
87 88 1.654137 CGCAGACGGCAACAAACAC 60.654 57.895 0.00 0.00 45.17 3.32
88 89 2.712539 CGCAGACGGCAACAAACA 59.287 55.556 0.00 0.00 45.17 2.83
89 90 2.725815 GCGCAGACGGCAACAAAC 60.726 61.111 0.30 0.00 45.17 2.93
106 107 4.383602 CAAAGGCGGCGACAACGG 62.384 66.667 18.30 0.00 40.15 4.44
107 108 2.764251 CTTCAAAGGCGGCGACAACG 62.764 60.000 18.30 1.34 42.93 4.10
108 109 1.082104 CTTCAAAGGCGGCGACAAC 60.082 57.895 18.30 0.00 0.00 3.32
109 110 2.903547 GCTTCAAAGGCGGCGACAA 61.904 57.895 18.30 0.00 0.00 3.18
110 111 3.353836 GCTTCAAAGGCGGCGACA 61.354 61.111 18.30 0.00 0.00 4.35
117 118 4.467062 GGCGAGCGCTTCAAAGGC 62.467 66.667 13.26 9.89 41.60 4.35
118 119 4.152625 CGGCGAGCGCTTCAAAGG 62.153 66.667 13.26 0.00 41.60 3.11
119 120 3.076296 CTCGGCGAGCGCTTCAAAG 62.076 63.158 25.31 2.10 41.60 2.77
120 121 3.112075 CTCGGCGAGCGCTTCAAA 61.112 61.111 25.31 0.00 41.60 2.69
149 150 4.143333 ATGAGGAACGGGGCGACG 62.143 66.667 0.00 0.00 40.31 5.12
150 151 2.202892 GATGAGGAACGGGGCGAC 60.203 66.667 0.00 0.00 0.00 5.19
151 152 2.577020 TAGGATGAGGAACGGGGCGA 62.577 60.000 0.00 0.00 0.00 5.54
152 153 1.472662 ATAGGATGAGGAACGGGGCG 61.473 60.000 0.00 0.00 0.00 6.13
153 154 0.321996 GATAGGATGAGGAACGGGGC 59.678 60.000 0.00 0.00 0.00 5.80
154 155 0.977395 GGATAGGATGAGGAACGGGG 59.023 60.000 0.00 0.00 0.00 5.73
155 156 0.603569 CGGATAGGATGAGGAACGGG 59.396 60.000 0.00 0.00 0.00 5.28
156 157 0.038159 GCGGATAGGATGAGGAACGG 60.038 60.000 0.00 0.00 0.00 4.44
157 158 0.038159 GGCGGATAGGATGAGGAACG 60.038 60.000 0.00 0.00 0.00 3.95
158 159 1.048601 TGGCGGATAGGATGAGGAAC 58.951 55.000 0.00 0.00 0.00 3.62
159 160 1.625315 CATGGCGGATAGGATGAGGAA 59.375 52.381 0.00 0.00 0.00 3.36
160 161 1.269958 CATGGCGGATAGGATGAGGA 58.730 55.000 0.00 0.00 0.00 3.71
161 162 0.251354 CCATGGCGGATAGGATGAGG 59.749 60.000 0.00 0.00 36.56 3.86
162 163 0.392193 GCCATGGCGGATAGGATGAG 60.392 60.000 23.48 0.00 36.56 2.90
163 164 1.679311 GCCATGGCGGATAGGATGA 59.321 57.895 23.48 0.00 36.56 2.92
164 165 4.308526 GCCATGGCGGATAGGATG 57.691 61.111 23.48 0.00 36.56 3.51
177 178 4.827087 CTGCTGCGGACGAGCCAT 62.827 66.667 1.17 0.00 35.43 4.40
180 181 2.543687 TAACTCTGCTGCGGACGAGC 62.544 60.000 7.16 2.73 36.95 5.03
181 182 0.524392 CTAACTCTGCTGCGGACGAG 60.524 60.000 7.16 6.78 0.00 4.18
182 183 0.958876 TCTAACTCTGCTGCGGACGA 60.959 55.000 7.16 0.00 0.00 4.20
183 184 0.101399 ATCTAACTCTGCTGCGGACG 59.899 55.000 7.16 6.72 0.00 4.79
184 185 1.565305 CATCTAACTCTGCTGCGGAC 58.435 55.000 7.16 0.00 0.00 4.79
185 186 0.179100 GCATCTAACTCTGCTGCGGA 60.179 55.000 11.25 11.25 35.49 5.54
186 187 0.460811 TGCATCTAACTCTGCTGCGG 60.461 55.000 0.95 0.95 39.16 5.69
187 188 0.649475 GTGCATCTAACTCTGCTGCG 59.351 55.000 0.00 0.00 39.16 5.18
188 189 0.649475 CGTGCATCTAACTCTGCTGC 59.351 55.000 0.00 0.00 39.16 5.25
189 190 0.649475 GCGTGCATCTAACTCTGCTG 59.351 55.000 0.00 0.00 39.16 4.41
190 191 0.460987 GGCGTGCATCTAACTCTGCT 60.461 55.000 0.00 0.00 39.16 4.24
191 192 1.756375 CGGCGTGCATCTAACTCTGC 61.756 60.000 0.00 0.00 38.87 4.26
192 193 0.179137 TCGGCGTGCATCTAACTCTG 60.179 55.000 6.85 0.00 0.00 3.35
193 194 0.747255 ATCGGCGTGCATCTAACTCT 59.253 50.000 6.85 0.00 0.00 3.24
194 195 1.132588 GATCGGCGTGCATCTAACTC 58.867 55.000 6.85 0.00 0.00 3.01
195 196 0.249489 GGATCGGCGTGCATCTAACT 60.249 55.000 6.85 0.00 0.00 2.24
196 197 0.529773 TGGATCGGCGTGCATCTAAC 60.530 55.000 6.85 0.00 0.00 2.34
197 198 0.529773 GTGGATCGGCGTGCATCTAA 60.530 55.000 6.85 0.00 0.00 2.10
198 199 1.067416 GTGGATCGGCGTGCATCTA 59.933 57.895 6.85 0.00 0.00 1.98
199 200 2.202932 GTGGATCGGCGTGCATCT 60.203 61.111 6.85 0.00 0.00 2.90
200 201 2.511373 TGTGGATCGGCGTGCATC 60.511 61.111 6.85 2.21 0.00 3.91
201 202 2.819595 GTGTGGATCGGCGTGCAT 60.820 61.111 6.85 0.00 0.00 3.96
204 205 2.726691 GAACGTGTGGATCGGCGTG 61.727 63.158 6.85 0.00 37.64 5.34
205 206 2.431942 GAACGTGTGGATCGGCGT 60.432 61.111 6.85 0.00 39.37 5.68
206 207 3.541831 CGAACGTGTGGATCGGCG 61.542 66.667 0.00 0.00 33.15 6.46
209 210 2.508439 CCCCGAACGTGTGGATCG 60.508 66.667 7.86 3.81 36.39 3.69
210 211 1.447314 GTCCCCGAACGTGTGGATC 60.447 63.158 7.86 0.00 0.00 3.36
211 212 2.660802 GTCCCCGAACGTGTGGAT 59.339 61.111 7.86 0.00 0.00 3.41
212 213 3.980989 CGTCCCCGAACGTGTGGA 61.981 66.667 7.86 0.02 37.86 4.02
230 231 3.751246 TACGTGAAGGGGCGACGG 61.751 66.667 0.00 0.00 37.42 4.79
231 232 2.505557 GTACGTGAAGGGGCGACG 60.506 66.667 0.00 0.00 39.03 5.12
232 233 2.125793 GGTACGTGAAGGGGCGAC 60.126 66.667 0.00 0.00 0.00 5.19
233 234 2.601067 TGGTACGTGAAGGGGCGA 60.601 61.111 0.00 0.00 0.00 5.54
234 235 2.433664 GTGGTACGTGAAGGGGCG 60.434 66.667 0.00 0.00 0.00 6.13
235 236 2.046604 GGTGGTACGTGAAGGGGC 60.047 66.667 0.00 0.00 0.00 5.80
236 237 2.263540 CGGTGGTACGTGAAGGGG 59.736 66.667 0.00 0.00 0.00 4.79
237 238 1.818959 TTCCGGTGGTACGTGAAGGG 61.819 60.000 0.00 0.00 0.00 3.95
238 239 0.033781 TTTCCGGTGGTACGTGAAGG 59.966 55.000 0.00 0.00 0.00 3.46
239 240 1.528161 GTTTTCCGGTGGTACGTGAAG 59.472 52.381 0.00 0.00 0.00 3.02
240 241 1.580815 GTTTTCCGGTGGTACGTGAA 58.419 50.000 0.00 0.00 0.00 3.18
241 242 0.249826 GGTTTTCCGGTGGTACGTGA 60.250 55.000 0.00 0.00 0.00 4.35
242 243 0.249996 AGGTTTTCCGGTGGTACGTG 60.250 55.000 0.00 0.00 46.35 4.49
243 244 0.033920 GAGGTTTTCCGGTGGTACGT 59.966 55.000 0.00 0.00 46.35 3.57
244 245 0.033781 TGAGGTTTTCCGGTGGTACG 59.966 55.000 0.00 0.00 46.35 3.67
245 246 1.516161 GTGAGGTTTTCCGGTGGTAC 58.484 55.000 0.00 0.00 46.35 3.34
246 247 0.397564 GGTGAGGTTTTCCGGTGGTA 59.602 55.000 0.00 0.00 46.35 3.25
247 248 1.149854 GGTGAGGTTTTCCGGTGGT 59.850 57.895 0.00 0.00 46.35 4.16
248 249 1.149627 TGGTGAGGTTTTCCGGTGG 59.850 57.895 0.00 0.00 46.35 4.61
249 250 1.170290 GGTGGTGAGGTTTTCCGGTG 61.170 60.000 0.00 0.00 46.35 4.94
250 251 1.149854 GGTGGTGAGGTTTTCCGGT 59.850 57.895 0.00 0.00 46.35 5.28
251 252 1.149627 TGGTGGTGAGGTTTTCCGG 59.850 57.895 0.00 0.00 46.35 5.14
252 253 1.170290 GGTGGTGGTGAGGTTTTCCG 61.170 60.000 0.00 0.00 46.35 4.30
253 254 1.170290 CGGTGGTGGTGAGGTTTTCC 61.170 60.000 0.00 0.00 41.05 3.13
254 255 1.792118 GCGGTGGTGGTGAGGTTTTC 61.792 60.000 0.00 0.00 0.00 2.29
255 256 1.826487 GCGGTGGTGGTGAGGTTTT 60.826 57.895 0.00 0.00 0.00 2.43
256 257 2.203294 GCGGTGGTGGTGAGGTTT 60.203 61.111 0.00 0.00 0.00 3.27
257 258 3.476031 CTGCGGTGGTGGTGAGGTT 62.476 63.158 0.00 0.00 0.00 3.50
258 259 3.941188 CTGCGGTGGTGGTGAGGT 61.941 66.667 0.00 0.00 0.00 3.85
259 260 4.704833 CCTGCGGTGGTGGTGAGG 62.705 72.222 0.00 0.00 0.00 3.86
260 261 2.674563 TTTCCTGCGGTGGTGGTGAG 62.675 60.000 0.00 0.00 0.00 3.51
261 262 2.272230 TTTTCCTGCGGTGGTGGTGA 62.272 55.000 0.00 0.00 0.00 4.02
262 263 1.388065 TTTTTCCTGCGGTGGTGGTG 61.388 55.000 0.00 0.00 0.00 4.17
263 264 1.076632 TTTTTCCTGCGGTGGTGGT 60.077 52.632 0.00 0.00 0.00 4.16
264 265 1.362355 GTTTTTCCTGCGGTGGTGG 59.638 57.895 0.00 0.00 0.00 4.61
265 266 1.362355 GGTTTTTCCTGCGGTGGTG 59.638 57.895 0.00 0.00 0.00 4.17
266 267 1.830847 GGGTTTTTCCTGCGGTGGT 60.831 57.895 0.00 0.00 36.25 4.16
267 268 0.250989 TAGGGTTTTTCCTGCGGTGG 60.251 55.000 0.00 0.00 37.75 4.61
268 269 1.268625 GTTAGGGTTTTTCCTGCGGTG 59.731 52.381 0.00 0.00 37.75 4.94
269 270 1.612676 GTTAGGGTTTTTCCTGCGGT 58.387 50.000 0.00 0.00 37.75 5.68
270 271 0.885879 GGTTAGGGTTTTTCCTGCGG 59.114 55.000 0.00 0.00 37.75 5.69
271 272 0.885879 GGGTTAGGGTTTTTCCTGCG 59.114 55.000 0.00 0.00 37.75 5.18
272 273 2.304221 AGGGTTAGGGTTTTTCCTGC 57.696 50.000 0.00 0.00 37.75 4.85
273 274 3.010250 AGCTAGGGTTAGGGTTTTTCCTG 59.990 47.826 0.00 0.00 37.75 3.86
274 275 3.266254 GAGCTAGGGTTAGGGTTTTTCCT 59.734 47.826 0.00 0.00 40.79 3.36
275 276 3.266254 AGAGCTAGGGTTAGGGTTTTTCC 59.734 47.826 0.00 0.00 0.00 3.13
276 277 4.515361 GAGAGCTAGGGTTAGGGTTTTTC 58.485 47.826 0.00 0.00 0.00 2.29
277 278 3.055312 CGAGAGCTAGGGTTAGGGTTTTT 60.055 47.826 0.00 0.00 0.00 1.94
278 279 2.500504 CGAGAGCTAGGGTTAGGGTTTT 59.499 50.000 0.00 0.00 0.00 2.43
279 280 2.108970 CGAGAGCTAGGGTTAGGGTTT 58.891 52.381 0.00 0.00 0.00 3.27
280 281 1.287146 TCGAGAGCTAGGGTTAGGGTT 59.713 52.381 0.00 0.00 0.00 4.11
281 282 0.924823 TCGAGAGCTAGGGTTAGGGT 59.075 55.000 0.00 0.00 0.00 4.34
282 283 1.611519 CTCGAGAGCTAGGGTTAGGG 58.388 60.000 6.58 0.00 0.00 3.53
283 284 1.611519 CCTCGAGAGCTAGGGTTAGG 58.388 60.000 15.71 0.00 0.00 2.69
284 285 1.611519 CCCTCGAGAGCTAGGGTTAG 58.388 60.000 15.71 0.00 46.45 2.34
285 286 3.823369 CCCTCGAGAGCTAGGGTTA 57.177 57.895 15.71 0.00 46.45 2.85
286 287 4.688770 CCCTCGAGAGCTAGGGTT 57.311 61.111 15.71 0.00 46.45 4.11
289 290 0.464013 TCGTTCCCTCGAGAGCTAGG 60.464 60.000 15.71 6.13 34.85 3.02
290 291 1.533731 GATCGTTCCCTCGAGAGCTAG 59.466 57.143 15.71 2.35 43.00 3.42
291 292 1.595466 GATCGTTCCCTCGAGAGCTA 58.405 55.000 15.71 0.00 43.00 3.32
292 293 1.440938 CGATCGTTCCCTCGAGAGCT 61.441 60.000 15.71 0.00 43.00 4.09
293 294 1.009449 CGATCGTTCCCTCGAGAGC 60.009 63.158 15.71 0.00 43.00 4.09
294 295 1.009449 GCGATCGTTCCCTCGAGAG 60.009 63.158 15.71 0.00 43.00 3.20
295 296 2.478890 GGCGATCGTTCCCTCGAGA 61.479 63.158 15.71 0.00 43.00 4.04
296 297 2.005960 AAGGCGATCGTTCCCTCGAG 62.006 60.000 17.81 5.13 43.00 4.04
297 298 2.050350 AAGGCGATCGTTCCCTCGA 61.050 57.895 17.81 0.00 43.86 4.04
298 299 1.878522 CAAGGCGATCGTTCCCTCG 60.879 63.158 17.81 0.00 37.92 4.63
299 300 2.174319 GCAAGGCGATCGTTCCCTC 61.174 63.158 17.81 0.39 0.00 4.30
300 301 2.125106 GCAAGGCGATCGTTCCCT 60.125 61.111 17.81 11.93 0.00 4.20
313 314 2.802667 CGATTGAGGCGACCGCAAG 61.803 63.158 16.47 4.87 45.53 4.01
314 315 2.813474 CGATTGAGGCGACCGCAA 60.813 61.111 16.47 14.90 46.28 4.85
317 318 4.514577 AGGCGATTGAGGCGACCG 62.515 66.667 0.00 0.00 37.53 4.79
318 319 2.586357 GAGGCGATTGAGGCGACC 60.586 66.667 0.00 0.00 37.53 4.79
319 320 1.590259 GAGAGGCGATTGAGGCGAC 60.590 63.158 0.00 0.00 41.99 5.19
320 321 2.786495 GGAGAGGCGATTGAGGCGA 61.786 63.158 0.00 0.00 41.99 5.54
321 322 2.279784 GGAGAGGCGATTGAGGCG 60.280 66.667 0.00 0.00 41.99 5.52
322 323 2.279784 CGGAGAGGCGATTGAGGC 60.280 66.667 0.00 0.00 0.00 4.70
323 324 1.227089 CACGGAGAGGCGATTGAGG 60.227 63.158 0.00 0.00 0.00 3.86
324 325 0.108615 AACACGGAGAGGCGATTGAG 60.109 55.000 0.00 0.00 0.00 3.02
325 326 0.320374 AAACACGGAGAGGCGATTGA 59.680 50.000 0.00 0.00 0.00 2.57
326 327 1.156736 AAAACACGGAGAGGCGATTG 58.843 50.000 0.00 0.00 0.00 2.67
327 328 1.804748 GAAAAACACGGAGAGGCGATT 59.195 47.619 0.00 0.00 0.00 3.34
328 329 1.270625 TGAAAAACACGGAGAGGCGAT 60.271 47.619 0.00 0.00 0.00 4.58
329 330 0.105224 TGAAAAACACGGAGAGGCGA 59.895 50.000 0.00 0.00 0.00 5.54
330 331 1.128692 GATGAAAAACACGGAGAGGCG 59.871 52.381 0.00 0.00 0.00 5.52
331 332 2.427506 AGATGAAAAACACGGAGAGGC 58.572 47.619 0.00 0.00 0.00 4.70
332 333 3.612860 CGTAGATGAAAAACACGGAGAGG 59.387 47.826 0.00 0.00 0.00 3.69
333 334 4.090066 CACGTAGATGAAAAACACGGAGAG 59.910 45.833 0.00 0.00 36.95 3.20
334 335 3.985279 CACGTAGATGAAAAACACGGAGA 59.015 43.478 0.00 0.00 36.95 3.71
335 336 3.122948 CCACGTAGATGAAAAACACGGAG 59.877 47.826 0.00 0.00 36.95 4.63
336 337 3.061322 CCACGTAGATGAAAAACACGGA 58.939 45.455 0.00 0.00 36.95 4.69
337 338 2.803956 ACCACGTAGATGAAAAACACGG 59.196 45.455 0.00 0.00 36.95 4.94
338 339 4.208355 CAACCACGTAGATGAAAAACACG 58.792 43.478 0.00 0.00 38.52 4.49
339 340 5.164606 ACAACCACGTAGATGAAAAACAC 57.835 39.130 0.00 0.00 0.00 3.32
340 341 5.124138 ACAACAACCACGTAGATGAAAAACA 59.876 36.000 0.00 0.00 0.00 2.83
341 342 5.454232 CACAACAACCACGTAGATGAAAAAC 59.546 40.000 0.00 0.00 0.00 2.43
342 343 5.449314 CCACAACAACCACGTAGATGAAAAA 60.449 40.000 0.00 0.00 0.00 1.94
343 344 4.035792 CCACAACAACCACGTAGATGAAAA 59.964 41.667 0.00 0.00 0.00 2.29
344 345 3.562141 CCACAACAACCACGTAGATGAAA 59.438 43.478 0.00 0.00 0.00 2.69
345 346 3.135225 CCACAACAACCACGTAGATGAA 58.865 45.455 0.00 0.00 0.00 2.57
346 347 2.761559 CCACAACAACCACGTAGATGA 58.238 47.619 0.00 0.00 0.00 2.92
347 348 1.196808 GCCACAACAACCACGTAGATG 59.803 52.381 0.00 0.00 0.00 2.90
348 349 1.202710 TGCCACAACAACCACGTAGAT 60.203 47.619 0.00 0.00 0.00 1.98
349 350 0.178301 TGCCACAACAACCACGTAGA 59.822 50.000 0.00 0.00 0.00 2.59
350 351 1.069296 CATGCCACAACAACCACGTAG 60.069 52.381 0.00 0.00 0.00 3.51
351 352 0.947960 CATGCCACAACAACCACGTA 59.052 50.000 0.00 0.00 0.00 3.57
352 353 1.034838 ACATGCCACAACAACCACGT 61.035 50.000 0.00 0.00 0.00 4.49
353 354 0.317770 GACATGCCACAACAACCACG 60.318 55.000 0.00 0.00 0.00 4.94
354 355 1.032014 AGACATGCCACAACAACCAC 58.968 50.000 0.00 0.00 0.00 4.16
355 356 2.647683 TAGACATGCCACAACAACCA 57.352 45.000 0.00 0.00 0.00 3.67
356 357 3.317993 ACTTTAGACATGCCACAACAACC 59.682 43.478 0.00 0.00 0.00 3.77
357 358 4.290155 CACTTTAGACATGCCACAACAAC 58.710 43.478 0.00 0.00 0.00 3.32
358 359 3.317711 CCACTTTAGACATGCCACAACAA 59.682 43.478 0.00 0.00 0.00 2.83
359 360 2.884012 CCACTTTAGACATGCCACAACA 59.116 45.455 0.00 0.00 0.00 3.33
360 361 2.351738 GCCACTTTAGACATGCCACAAC 60.352 50.000 0.00 0.00 0.00 3.32
361 362 1.885887 GCCACTTTAGACATGCCACAA 59.114 47.619 0.00 0.00 0.00 3.33
362 363 1.533625 GCCACTTTAGACATGCCACA 58.466 50.000 0.00 0.00 0.00 4.17
363 364 0.811281 GGCCACTTTAGACATGCCAC 59.189 55.000 0.00 0.00 38.73 5.01
364 365 0.323360 GGGCCACTTTAGACATGCCA 60.323 55.000 4.39 0.00 40.64 4.92
365 366 0.034089 AGGGCCACTTTAGACATGCC 60.034 55.000 6.18 0.00 38.16 4.40
366 367 1.098050 CAGGGCCACTTTAGACATGC 58.902 55.000 6.18 0.00 0.00 4.06
367 368 2.496899 ACAGGGCCACTTTAGACATG 57.503 50.000 6.18 0.00 0.00 3.21
368 369 4.042934 ACTTAACAGGGCCACTTTAGACAT 59.957 41.667 6.18 0.00 0.00 3.06
369 370 3.393278 ACTTAACAGGGCCACTTTAGACA 59.607 43.478 6.18 0.00 0.00 3.41
370 371 4.017177 ACTTAACAGGGCCACTTTAGAC 57.983 45.455 6.18 0.00 0.00 2.59
371 372 4.717279 AACTTAACAGGGCCACTTTAGA 57.283 40.909 6.18 0.00 0.00 2.10
372 373 4.390909 CGTAACTTAACAGGGCCACTTTAG 59.609 45.833 6.18 1.88 0.00 1.85
373 374 4.040217 TCGTAACTTAACAGGGCCACTTTA 59.960 41.667 6.18 0.00 0.00 1.85
374 375 3.143728 CGTAACTTAACAGGGCCACTTT 58.856 45.455 6.18 0.00 0.00 2.66
375 376 2.369532 TCGTAACTTAACAGGGCCACTT 59.630 45.455 6.18 0.00 0.00 3.16
376 377 1.972795 TCGTAACTTAACAGGGCCACT 59.027 47.619 6.18 0.00 0.00 4.00
377 378 2.460757 TCGTAACTTAACAGGGCCAC 57.539 50.000 6.18 0.00 0.00 5.01
378 379 3.431207 GCTATCGTAACTTAACAGGGCCA 60.431 47.826 6.18 0.00 0.00 5.36
379 380 3.129109 GCTATCGTAACTTAACAGGGCC 58.871 50.000 0.00 0.00 0.00 5.80
380 381 2.793232 CGCTATCGTAACTTAACAGGGC 59.207 50.000 0.00 0.00 0.00 5.19
400 401 2.052237 ACAAAAGCAGCGCGAACG 60.052 55.556 12.10 0.00 44.07 3.95
401 402 0.865639 AACACAAAAGCAGCGCGAAC 60.866 50.000 12.10 0.00 0.00 3.95
402 403 0.865218 CAACACAAAAGCAGCGCGAA 60.865 50.000 12.10 0.00 0.00 4.70
403 404 1.298264 CAACACAAAAGCAGCGCGA 60.298 52.632 12.10 0.00 0.00 5.87
404 405 2.919860 GCAACACAAAAGCAGCGCG 61.920 57.895 0.00 0.00 0.00 6.86
405 406 2.919860 CGCAACACAAAAGCAGCGC 61.920 57.895 0.00 0.00 38.68 5.92
406 407 2.919860 GCGCAACACAAAAGCAGCG 61.920 57.895 0.30 0.00 46.99 5.18
407 408 2.588585 GGCGCAACACAAAAGCAGC 61.589 57.895 10.83 0.00 0.00 5.25
408 409 0.805322 TTGGCGCAACACAAAAGCAG 60.805 50.000 10.83 0.00 0.00 4.24
409 410 0.805322 CTTGGCGCAACACAAAAGCA 60.805 50.000 10.83 0.00 0.00 3.91
410 411 0.527385 TCTTGGCGCAACACAAAAGC 60.527 50.000 10.83 0.00 0.00 3.51
411 412 1.788308 CATCTTGGCGCAACACAAAAG 59.212 47.619 10.83 0.98 0.00 2.27
412 413 1.850377 CATCTTGGCGCAACACAAAA 58.150 45.000 10.83 0.00 0.00 2.44
413 414 0.597118 GCATCTTGGCGCAACACAAA 60.597 50.000 10.83 0.00 0.00 2.83
414 415 1.007502 GCATCTTGGCGCAACACAA 60.008 52.632 10.83 2.77 0.00 3.33
415 416 1.525718 ATGCATCTTGGCGCAACACA 61.526 50.000 10.83 0.00 42.37 3.72
416 417 1.074319 CATGCATCTTGGCGCAACAC 61.074 55.000 10.83 0.00 42.37 3.32
417 418 1.213275 CATGCATCTTGGCGCAACA 59.787 52.632 10.83 0.00 42.37 3.33
418 419 2.162754 GCATGCATCTTGGCGCAAC 61.163 57.895 14.21 0.00 42.37 4.17
419 420 2.182284 GCATGCATCTTGGCGCAA 59.818 55.556 14.21 0.00 42.37 4.85
420 421 3.063084 TGCATGCATCTTGGCGCA 61.063 55.556 18.46 0.00 43.45 6.09
421 422 2.581409 GTGCATGCATCTTGGCGC 60.581 61.111 25.64 4.06 36.28 6.53
422 423 2.277692 CGTGCATGCATCTTGGCG 60.278 61.111 25.64 17.43 36.28 5.69
423 424 1.515519 CACGTGCATGCATCTTGGC 60.516 57.895 25.64 8.75 0.00 4.52
424 425 0.736636 ATCACGTGCATGCATCTTGG 59.263 50.000 25.64 13.12 0.00 3.61
425 426 1.268386 GGATCACGTGCATGCATCTTG 60.268 52.381 25.64 19.88 0.00 3.02
426 427 1.019673 GGATCACGTGCATGCATCTT 58.980 50.000 25.64 8.31 0.00 2.40
427 428 1.156034 CGGATCACGTGCATGCATCT 61.156 55.000 25.64 9.08 37.93 2.90
428 429 1.153597 TCGGATCACGTGCATGCATC 61.154 55.000 25.64 16.50 44.69 3.91
429 430 1.153389 TCGGATCACGTGCATGCAT 60.153 52.632 25.64 7.13 44.69 3.96
430 431 2.100031 GTCGGATCACGTGCATGCA 61.100 57.895 18.46 18.46 44.69 3.96
431 432 2.703409 GTCGGATCACGTGCATGC 59.297 61.111 11.82 11.82 44.69 4.06
432 433 2.516589 CCGTCGGATCACGTGCATG 61.517 63.158 11.67 3.82 44.69 4.06
433 434 2.202743 CCGTCGGATCACGTGCAT 60.203 61.111 11.67 5.39 44.69 3.96
436 437 2.431771 TTGCCGTCGGATCACGTG 60.432 61.111 17.49 9.94 44.69 4.49
437 438 2.126071 CTTGCCGTCGGATCACGT 60.126 61.111 17.49 0.00 44.69 4.49
438 439 2.885644 CCTTGCCGTCGGATCACG 60.886 66.667 17.49 1.74 46.11 4.35
439 440 1.519455 CTCCTTGCCGTCGGATCAC 60.519 63.158 17.49 0.00 0.00 3.06
440 441 2.721167 CCTCCTTGCCGTCGGATCA 61.721 63.158 17.49 0.57 0.00 2.92
441 442 2.107141 CCTCCTTGCCGTCGGATC 59.893 66.667 17.49 0.00 0.00 3.36
442 443 2.363795 TCCTCCTTGCCGTCGGAT 60.364 61.111 17.49 0.00 0.00 4.18
443 444 3.379445 GTCCTCCTTGCCGTCGGA 61.379 66.667 17.49 0.00 0.00 4.55
444 445 4.796231 CGTCCTCCTTGCCGTCGG 62.796 72.222 6.99 6.99 0.00 4.79
445 446 3.569049 AACGTCCTCCTTGCCGTCG 62.569 63.158 0.00 0.00 32.30 5.12
446 447 1.737008 GAACGTCCTCCTTGCCGTC 60.737 63.158 0.00 0.00 32.30 4.79
447 448 2.342648 GAACGTCCTCCTTGCCGT 59.657 61.111 0.00 0.00 34.56 5.68
448 449 2.434359 GGAACGTCCTCCTTGCCG 60.434 66.667 0.00 0.00 32.53 5.69
449 450 3.069778 AGGAACGTCCTCCTTGCC 58.930 61.111 2.79 0.00 45.66 4.52
462 463 7.001674 TCTTATTTGTAGCAAGTTCCAAGGAA 58.998 34.615 0.00 0.00 0.00 3.36
463 464 6.430000 GTCTTATTTGTAGCAAGTTCCAAGGA 59.570 38.462 0.00 0.00 0.00 3.36
464 465 6.612306 GTCTTATTTGTAGCAAGTTCCAAGG 58.388 40.000 0.00 0.00 0.00 3.61
465 466 6.073222 ACGTCTTATTTGTAGCAAGTTCCAAG 60.073 38.462 0.00 0.00 0.00 3.61
466 467 5.761234 ACGTCTTATTTGTAGCAAGTTCCAA 59.239 36.000 0.00 0.00 0.00 3.53
467 468 5.302360 ACGTCTTATTTGTAGCAAGTTCCA 58.698 37.500 0.00 0.00 0.00 3.53
468 469 5.857822 ACGTCTTATTTGTAGCAAGTTCC 57.142 39.130 0.00 0.00 0.00 3.62
469 470 6.007677 CGAACGTCTTATTTGTAGCAAGTTC 58.992 40.000 0.00 0.00 0.00 3.01
470 471 5.107220 CCGAACGTCTTATTTGTAGCAAGTT 60.107 40.000 0.00 0.00 0.00 2.66
471 472 4.387862 CCGAACGTCTTATTTGTAGCAAGT 59.612 41.667 0.00 0.00 0.00 3.16
472 473 4.724036 GCCGAACGTCTTATTTGTAGCAAG 60.724 45.833 0.00 0.00 0.00 4.01
473 474 3.123959 GCCGAACGTCTTATTTGTAGCAA 59.876 43.478 0.00 0.00 0.00 3.91
474 475 2.669434 GCCGAACGTCTTATTTGTAGCA 59.331 45.455 0.00 0.00 0.00 3.49
475 476 2.030091 GGCCGAACGTCTTATTTGTAGC 59.970 50.000 0.00 0.00 0.00 3.58
476 477 3.255725 TGGCCGAACGTCTTATTTGTAG 58.744 45.455 0.00 0.00 0.00 2.74
477 478 3.316071 TGGCCGAACGTCTTATTTGTA 57.684 42.857 0.00 0.00 0.00 2.41
478 479 2.172851 TGGCCGAACGTCTTATTTGT 57.827 45.000 0.00 0.00 0.00 2.83
479 480 3.757745 ATTGGCCGAACGTCTTATTTG 57.242 42.857 0.00 0.00 0.00 2.32
480 481 5.120399 TGATATTGGCCGAACGTCTTATTT 58.880 37.500 0.00 0.00 0.00 1.40
481 482 4.699637 TGATATTGGCCGAACGTCTTATT 58.300 39.130 0.00 0.00 0.00 1.40
482 483 4.330944 TGATATTGGCCGAACGTCTTAT 57.669 40.909 0.00 0.00 0.00 1.73
483 484 3.804786 TGATATTGGCCGAACGTCTTA 57.195 42.857 0.00 0.00 0.00 2.10
484 485 2.684001 TGATATTGGCCGAACGTCTT 57.316 45.000 0.00 0.00 0.00 3.01
485 486 2.910688 ATGATATTGGCCGAACGTCT 57.089 45.000 0.00 0.00 0.00 4.18
486 487 3.560068 AGAAATGATATTGGCCGAACGTC 59.440 43.478 0.00 0.00 0.00 4.34
487 488 3.312421 CAGAAATGATATTGGCCGAACGT 59.688 43.478 0.00 0.00 0.00 3.99
488 489 3.849645 GCAGAAATGATATTGGCCGAACG 60.850 47.826 0.00 0.00 0.00 3.95
489 490 3.066621 TGCAGAAATGATATTGGCCGAAC 59.933 43.478 0.00 0.00 0.00 3.95
490 491 3.286353 TGCAGAAATGATATTGGCCGAA 58.714 40.909 0.00 0.00 0.00 4.30
491 492 2.929641 TGCAGAAATGATATTGGCCGA 58.070 42.857 0.00 0.00 0.00 5.54
492 493 3.928727 ATGCAGAAATGATATTGGCCG 57.071 42.857 0.00 0.00 0.00 6.13
493 494 4.992951 GGAAATGCAGAAATGATATTGGCC 59.007 41.667 0.00 0.00 0.00 5.36
494 495 5.850614 AGGAAATGCAGAAATGATATTGGC 58.149 37.500 0.00 0.00 0.00 4.52
495 496 8.726870 AAAAGGAAATGCAGAAATGATATTGG 57.273 30.769 0.00 0.00 0.00 3.16
497 498 9.947433 TGAAAAAGGAAATGCAGAAATGATATT 57.053 25.926 0.00 0.00 0.00 1.28
498 499 9.374838 GTGAAAAAGGAAATGCAGAAATGATAT 57.625 29.630 0.00 0.00 0.00 1.63
499 500 8.587608 AGTGAAAAAGGAAATGCAGAAATGATA 58.412 29.630 0.00 0.00 0.00 2.15
500 501 7.447594 AGTGAAAAAGGAAATGCAGAAATGAT 58.552 30.769 0.00 0.00 0.00 2.45
501 502 6.819284 AGTGAAAAAGGAAATGCAGAAATGA 58.181 32.000 0.00 0.00 0.00 2.57
502 503 7.486802 AAGTGAAAAAGGAAATGCAGAAATG 57.513 32.000 0.00 0.00 0.00 2.32
503 504 8.510243 AAAAGTGAAAAAGGAAATGCAGAAAT 57.490 26.923 0.00 0.00 0.00 2.17
504 505 7.920160 AAAAGTGAAAAAGGAAATGCAGAAA 57.080 28.000 0.00 0.00 0.00 2.52
505 506 7.920160 AAAAAGTGAAAAAGGAAATGCAGAA 57.080 28.000 0.00 0.00 0.00 3.02
506 507 9.442047 TTTAAAAAGTGAAAAAGGAAATGCAGA 57.558 25.926 0.00 0.00 0.00 4.26
532 533 8.584157 TGAGCACCTAAATATGTGAACATTTTT 58.416 29.630 13.80 13.80 39.56 1.94
533 534 8.121305 TGAGCACCTAAATATGTGAACATTTT 57.879 30.769 0.47 5.37 37.76 1.82
595 605 1.954146 GTCGTTGCCGTCAAGCAGA 60.954 57.895 0.00 0.00 45.13 4.26
641 651 0.102844 TTGTTTGCTGCTGTTGAGCC 59.897 50.000 0.00 0.00 45.57 4.70
702 712 1.135333 GCGGGGTTTTCAGTGTTTTCA 59.865 47.619 0.00 0.00 0.00 2.69
706 716 2.841160 GCGCGGGGTTTTCAGTGTT 61.841 57.895 8.83 0.00 0.00 3.32
708 718 4.038080 GGCGCGGGGTTTTCAGTG 62.038 66.667 8.83 0.00 0.00 3.66
709 719 4.572571 TGGCGCGGGGTTTTCAGT 62.573 61.111 8.83 0.00 0.00 3.41
710 720 3.267597 CTTGGCGCGGGGTTTTCAG 62.268 63.158 8.83 0.00 0.00 3.02
711 721 3.291383 CTTGGCGCGGGGTTTTCA 61.291 61.111 8.83 0.00 0.00 2.69
712 722 2.077821 TTTCTTGGCGCGGGGTTTTC 62.078 55.000 8.83 0.00 0.00 2.29
713 723 1.468506 ATTTCTTGGCGCGGGGTTTT 61.469 50.000 8.83 0.00 0.00 2.43
717 727 1.841663 CGATATTTCTTGGCGCGGGG 61.842 60.000 8.83 0.00 0.00 5.73
718 728 1.569493 CGATATTTCTTGGCGCGGG 59.431 57.895 8.83 0.00 0.00 6.13
723 734 4.515191 TCCATACTTGCGATATTTCTTGGC 59.485 41.667 0.00 0.00 0.00 4.52
762 773 4.657824 ACCACGCGGTGTCTTCCG 62.658 66.667 12.47 0.52 46.79 4.30
774 785 1.402720 GGTCAATGGCAATTCACCACG 60.403 52.381 1.22 0.00 36.93 4.94
796 807 0.319641 GAGACTCGGGTTGTGGTCAC 60.320 60.000 0.00 0.00 0.00 3.67
927 957 0.689055 ATGTGCACTGCTCCTTCTGA 59.311 50.000 19.41 0.00 0.00 3.27
928 958 1.467734 GAATGTGCACTGCTCCTTCTG 59.532 52.381 19.41 0.00 0.00 3.02
929 959 1.350351 AGAATGTGCACTGCTCCTTCT 59.650 47.619 19.41 14.34 34.23 2.85
930 960 1.818642 AGAATGTGCACTGCTCCTTC 58.181 50.000 19.41 11.15 30.82 3.46
931 961 1.884579 CAAGAATGTGCACTGCTCCTT 59.115 47.619 19.41 10.86 0.00 3.36
934 964 3.396491 GCAAGAATGTGCACTGCTC 57.604 52.632 19.41 11.42 44.29 4.26
979 1035 1.341156 ATTTCTGCCTCCTCCCTCGG 61.341 60.000 0.00 0.00 0.00 4.63
1454 1510 1.999735 TCGCGAATTACAAGAGCAAGG 59.000 47.619 6.20 0.00 0.00 3.61
1508 1754 0.034059 GGTGCATATGCCTCGCTAGT 59.966 55.000 24.54 0.00 41.18 2.57
1658 1904 7.335422 ACATGTAGCAGAAAGAAATTCCTACTG 59.665 37.037 0.00 0.00 38.94 2.74
1690 1951 8.480066 CCTTTTCTTTCGCAAAAATAGACTTTC 58.520 33.333 0.00 0.00 0.00 2.62
1706 1979 8.876790 CCTTGATTAATGCAATCCTTTTCTTTC 58.123 33.333 0.00 0.00 42.17 2.62
1720 1993 8.087982 TCGTAATGATCTTCCTTGATTAATGC 57.912 34.615 0.00 0.00 0.00 3.56
1744 2017 1.271597 ACAACCTCTGCCAACAGGATC 60.272 52.381 0.00 0.00 44.59 3.36
1747 2020 0.179020 TGACAACCTCTGCCAACAGG 60.179 55.000 0.00 0.00 44.59 4.00
1750 2023 3.733443 AAATTGACAACCTCTGCCAAC 57.267 42.857 0.00 0.00 29.36 3.77
1760 2033 7.638683 CGAAATAGACCCGATAAAATTGACAAC 59.361 37.037 0.00 0.00 0.00 3.32
1761 2034 7.677747 GCGAAATAGACCCGATAAAATTGACAA 60.678 37.037 0.00 0.00 0.00 3.18
1764 2037 5.818336 TGCGAAATAGACCCGATAAAATTGA 59.182 36.000 0.00 0.00 0.00 2.57
1765 2038 6.055231 TGCGAAATAGACCCGATAAAATTG 57.945 37.500 0.00 0.00 0.00 2.32
1771 2044 1.000506 GGCTGCGAAATAGACCCGATA 59.999 52.381 0.00 0.00 0.00 2.92
1775 2048 2.143925 GTATGGCTGCGAAATAGACCC 58.856 52.381 0.00 0.00 0.00 4.46
1786 2059 3.880846 GCACCGCTGTATGGCTGC 61.881 66.667 0.00 0.00 38.48 5.25
1816 2090 4.336993 TGCGCCTCTTAAAACAGAAAAGAA 59.663 37.500 4.18 0.00 0.00 2.52
1817 2091 3.880490 TGCGCCTCTTAAAACAGAAAAGA 59.120 39.130 4.18 0.00 0.00 2.52
1818 2092 3.975035 GTGCGCCTCTTAAAACAGAAAAG 59.025 43.478 4.18 0.00 0.00 2.27
1819 2093 3.378742 TGTGCGCCTCTTAAAACAGAAAA 59.621 39.130 4.18 0.00 0.00 2.29
1820 2094 2.946329 TGTGCGCCTCTTAAAACAGAAA 59.054 40.909 4.18 0.00 0.00 2.52
1821 2095 2.289547 GTGTGCGCCTCTTAAAACAGAA 59.710 45.455 4.18 0.00 0.00 3.02
1822 2096 1.871039 GTGTGCGCCTCTTAAAACAGA 59.129 47.619 4.18 0.00 0.00 3.41
1823 2097 1.069227 GGTGTGCGCCTCTTAAAACAG 60.069 52.381 4.18 0.00 0.00 3.16
1824 2098 0.948678 GGTGTGCGCCTCTTAAAACA 59.051 50.000 4.18 0.00 0.00 2.83
1825 2099 0.240145 GGGTGTGCGCCTCTTAAAAC 59.760 55.000 4.18 0.00 0.00 2.43
1826 2100 0.891904 GGGGTGTGCGCCTCTTAAAA 60.892 55.000 4.18 0.00 43.60 1.52
1827 2101 1.302993 GGGGTGTGCGCCTCTTAAA 60.303 57.895 4.18 0.00 43.60 1.52
1828 2102 2.349755 GGGGTGTGCGCCTCTTAA 59.650 61.111 4.18 0.00 43.60 1.85
1829 2103 3.712907 GGGGGTGTGCGCCTCTTA 61.713 66.667 4.18 0.00 45.92 2.10
1859 2133 2.426023 CTAGTGTATGGGCCGGCC 59.574 66.667 38.57 38.57 0.00 6.13
1860 2134 1.979619 AACCTAGTGTATGGGCCGGC 61.980 60.000 21.18 21.18 31.04 6.13
1861 2135 0.106149 GAACCTAGTGTATGGGCCGG 59.894 60.000 0.00 0.00 31.04 6.13
1862 2136 0.106149 GGAACCTAGTGTATGGGCCG 59.894 60.000 0.00 0.00 31.04 6.13
1863 2137 1.508256 AGGAACCTAGTGTATGGGCC 58.492 55.000 0.00 0.00 31.04 5.80
1864 2138 3.646736 AAAGGAACCTAGTGTATGGGC 57.353 47.619 0.00 0.00 31.04 5.36
1865 2139 5.186198 CAGAAAAGGAACCTAGTGTATGGG 58.814 45.833 0.00 0.00 35.12 4.00
1866 2140 5.805728 ACAGAAAAGGAACCTAGTGTATGG 58.194 41.667 0.00 0.00 0.00 2.74
1867 2141 7.745620 AAACAGAAAAGGAACCTAGTGTATG 57.254 36.000 0.00 0.00 0.00 2.39
1868 2142 9.856162 TTAAAACAGAAAAGGAACCTAGTGTAT 57.144 29.630 0.00 0.00 0.00 2.29
1869 2143 9.333724 CTTAAAACAGAAAAGGAACCTAGTGTA 57.666 33.333 0.00 0.00 0.00 2.90
1870 2144 8.050930 TCTTAAAACAGAAAAGGAACCTAGTGT 58.949 33.333 0.00 0.00 0.00 3.55
1871 2145 8.446599 TCTTAAAACAGAAAAGGAACCTAGTG 57.553 34.615 0.00 0.00 0.00 2.74
1872 2146 7.720074 CCTCTTAAAACAGAAAAGGAACCTAGT 59.280 37.037 0.00 0.00 0.00 2.57
1873 2147 7.308649 GCCTCTTAAAACAGAAAAGGAACCTAG 60.309 40.741 0.00 0.00 0.00 3.02
1874 2148 6.489022 GCCTCTTAAAACAGAAAAGGAACCTA 59.511 38.462 0.00 0.00 0.00 3.08
1875 2149 5.302059 GCCTCTTAAAACAGAAAAGGAACCT 59.698 40.000 0.00 0.00 0.00 3.50
1876 2150 5.529791 GCCTCTTAAAACAGAAAAGGAACC 58.470 41.667 0.00 0.00 0.00 3.62
1877 2151 5.212934 CGCCTCTTAAAACAGAAAAGGAAC 58.787 41.667 0.00 0.00 0.00 3.62
1878 2152 4.261447 GCGCCTCTTAAAACAGAAAAGGAA 60.261 41.667 0.00 0.00 0.00 3.36
1879 2153 3.252458 GCGCCTCTTAAAACAGAAAAGGA 59.748 43.478 0.00 0.00 0.00 3.36
1880 2154 3.004315 TGCGCCTCTTAAAACAGAAAAGG 59.996 43.478 4.18 0.00 0.00 3.11
1881 2155 4.223320 TGCGCCTCTTAAAACAGAAAAG 57.777 40.909 4.18 0.00 0.00 2.27
1882 2156 4.640789 TTGCGCCTCTTAAAACAGAAAA 57.359 36.364 4.18 0.00 0.00 2.29
1883 2157 4.640789 TTTGCGCCTCTTAAAACAGAAA 57.359 36.364 4.18 0.00 0.00 2.52
1884 2158 4.640789 TTTTGCGCCTCTTAAAACAGAA 57.359 36.364 4.18 0.00 0.00 3.02
1885 2159 4.640789 TTTTTGCGCCTCTTAAAACAGA 57.359 36.364 4.18 0.00 0.00 3.41
1903 2177 1.406903 ACCTGCTGCTTGCTCTTTTT 58.593 45.000 0.00 0.00 43.37 1.94
1904 2178 1.406903 AACCTGCTGCTTGCTCTTTT 58.593 45.000 0.00 0.00 43.37 2.27
1905 2179 1.339291 GAAACCTGCTGCTTGCTCTTT 59.661 47.619 0.00 0.00 43.37 2.52
1906 2180 0.957362 GAAACCTGCTGCTTGCTCTT 59.043 50.000 0.00 0.00 43.37 2.85
1907 2181 1.233285 CGAAACCTGCTGCTTGCTCT 61.233 55.000 0.00 0.00 43.37 4.09
1908 2182 1.208614 CGAAACCTGCTGCTTGCTC 59.791 57.895 0.00 0.00 43.37 4.26
1909 2183 0.819259 TTCGAAACCTGCTGCTTGCT 60.819 50.000 0.00 0.00 43.37 3.91
1910 2184 0.661483 GTTCGAAACCTGCTGCTTGC 60.661 55.000 0.00 0.00 43.25 4.01
1911 2185 3.461843 GTTCGAAACCTGCTGCTTG 57.538 52.632 0.00 0.00 0.00 4.01
1921 2195 2.170273 GCGTCGCAGGTTCGAAAC 59.830 61.111 13.44 4.63 40.43 2.78
1922 2196 2.279584 TGCGTCGCAGGTTCGAAA 60.280 55.556 17.58 0.00 40.43 3.46
1923 2197 2.132517 TAGTGCGTCGCAGGTTCGAA 62.133 55.000 22.42 0.00 40.08 3.71
1924 2198 2.523184 CTAGTGCGTCGCAGGTTCGA 62.523 60.000 22.42 4.12 40.08 3.71
1925 2199 2.126618 TAGTGCGTCGCAGGTTCG 60.127 61.111 22.42 0.00 40.08 3.95
1926 2200 2.445438 GCTAGTGCGTCGCAGGTTC 61.445 63.158 22.42 8.95 40.08 3.62
1927 2201 2.432628 GCTAGTGCGTCGCAGGTT 60.433 61.111 22.42 11.90 40.08 3.50
1928 2202 4.436998 GGCTAGTGCGTCGCAGGT 62.437 66.667 22.42 13.69 40.08 4.00
1929 2203 4.435436 TGGCTAGTGCGTCGCAGG 62.435 66.667 22.42 14.60 40.08 4.85
1930 2204 3.181967 GTGGCTAGTGCGTCGCAG 61.182 66.667 22.42 10.56 40.08 5.18
1931 2205 4.735132 GGTGGCTAGTGCGTCGCA 62.735 66.667 17.58 17.58 40.82 5.10
1937 2211 2.671619 TTTGGCGGTGGCTAGTGC 60.672 61.111 0.00 0.00 39.81 4.40
1938 2212 2.332654 GGTTTGGCGGTGGCTAGTG 61.333 63.158 0.00 0.00 39.81 2.74
1939 2213 2.033602 GGTTTGGCGGTGGCTAGT 59.966 61.111 0.00 0.00 39.81 2.57
1940 2214 1.906105 TAGGGTTTGGCGGTGGCTAG 61.906 60.000 0.00 0.00 39.81 3.42
1941 2215 1.906105 CTAGGGTTTGGCGGTGGCTA 61.906 60.000 0.00 0.00 39.81 3.93
1942 2216 3.253838 TAGGGTTTGGCGGTGGCT 61.254 61.111 0.00 0.00 39.81 4.75
1943 2217 2.750237 CTAGGGTTTGGCGGTGGC 60.750 66.667 0.00 0.00 38.90 5.01
1944 2218 0.538746 AAACTAGGGTTTGGCGGTGG 60.539 55.000 0.00 0.00 43.16 4.61
1945 2219 1.324383 AAAACTAGGGTTTGGCGGTG 58.676 50.000 0.00 0.00 43.90 4.94
1946 2220 2.553685 CCTAAAACTAGGGTTTGGCGGT 60.554 50.000 0.00 0.00 43.90 5.68
1947 2221 2.089201 CCTAAAACTAGGGTTTGGCGG 58.911 52.381 0.00 0.00 43.90 6.13
1948 2222 1.471287 GCCTAAAACTAGGGTTTGGCG 59.529 52.381 14.17 4.20 43.90 5.69
1949 2223 1.471287 CGCCTAAAACTAGGGTTTGGC 59.529 52.381 17.39 17.39 43.90 4.52
1950 2224 2.786777 ACGCCTAAAACTAGGGTTTGG 58.213 47.619 0.00 0.00 43.90 3.28
1951 2225 4.841443 AAACGCCTAAAACTAGGGTTTG 57.159 40.909 12.86 0.00 43.90 2.93
1952 2226 4.038282 CCAAAACGCCTAAAACTAGGGTTT 59.962 41.667 0.00 9.90 46.27 3.27
1953 2227 3.570975 CCAAAACGCCTAAAACTAGGGTT 59.429 43.478 0.00 1.09 37.69 4.11
1954 2228 3.151554 CCAAAACGCCTAAAACTAGGGT 58.848 45.455 0.00 0.00 37.69 4.34
1955 2229 2.094906 GCCAAAACGCCTAAAACTAGGG 60.095 50.000 0.00 0.00 37.69 3.53
1956 2230 2.554893 TGCCAAAACGCCTAAAACTAGG 59.445 45.455 0.00 0.00 40.20 3.02
1957 2231 3.907894 TGCCAAAACGCCTAAAACTAG 57.092 42.857 0.00 0.00 0.00 2.57
1958 2232 4.361420 GTTTGCCAAAACGCCTAAAACTA 58.639 39.130 0.00 0.00 36.60 2.24
1959 2233 3.191669 GTTTGCCAAAACGCCTAAAACT 58.808 40.909 0.00 0.00 36.60 2.66
2058 2826 1.773496 CGAGTTCGAGTTTCCACGC 59.227 57.895 0.00 0.00 43.02 5.34
2113 2881 4.467198 AAGTACTTGCGTAGTTGGCTAT 57.533 40.909 7.48 0.00 37.75 2.97
2135 2903 4.339872 AAGGATGTTGCAAATTTCAGCA 57.660 36.364 0.00 0.00 39.32 4.41
2167 3018 8.969260 AAGAAAAAGAAAAGGAAGATGCAATT 57.031 26.923 0.00 0.00 0.00 2.32
2180 3031 7.695055 AGGAAAAAGGGGAAAGAAAAAGAAAA 58.305 30.769 0.00 0.00 0.00 2.29
2242 3094 7.222805 GGAAAATGTTCACTGGAGTTTTCTTTC 59.777 37.037 0.00 0.00 34.57 2.62
2246 3098 5.163457 TGGGAAAATGTTCACTGGAGTTTTC 60.163 40.000 0.00 0.00 38.08 2.29
2294 3147 5.915857 TCACGAATTCGAAAACTTCATCAG 58.084 37.500 33.05 0.26 43.02 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.