Multiple sequence alignment - TraesCS3D01G368300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G368300 chr3D 100.000 3059 0 0 881 3939 481717094 481714036 0.000000e+00 5650.0
1 TraesCS3D01G368300 chr3D 100.000 475 0 0 1 475 481717974 481717500 0.000000e+00 878.0
2 TraesCS3D01G368300 chr3D 85.294 68 10 0 1048 1115 64171341 64171408 1.960000e-08 71.3
3 TraesCS3D01G368300 chr3B 92.789 2607 118 23 881 3443 643276517 643273937 0.000000e+00 3709.0
4 TraesCS3D01G368300 chr3B 88.428 2411 181 41 1495 3859 643271829 643269471 0.000000e+00 2817.0
5 TraesCS3D01G368300 chr3B 82.420 1314 200 16 1722 3005 643305012 643303700 0.000000e+00 1118.0
6 TraesCS3D01G368300 chr3B 90.783 217 14 2 1171 1384 643272087 643271874 6.440000e-73 285.0
7 TraesCS3D01G368300 chr3B 95.000 40 2 0 3339 3378 643269883 643269844 3.290000e-06 63.9
8 TraesCS3D01G368300 chr3B 96.970 33 0 1 1086 1117 752671106 752671074 2.000000e-03 54.7
9 TraesCS3D01G368300 chr3A 93.297 2223 80 21 951 3118 624864666 624862458 0.000000e+00 3216.0
10 TraesCS3D01G368300 chr3A 78.119 1042 171 27 2266 3270 624867046 624866025 3.370000e-170 608.0
11 TraesCS3D01G368300 chr3A 83.086 538 84 6 1722 2253 624911587 624911051 2.130000e-132 483.0
12 TraesCS3D01G368300 chr3A 83.789 475 34 19 3400 3859 624862288 624861842 1.020000e-110 411.0
13 TraesCS3D01G368300 chr3A 87.029 239 26 5 1 239 41093610 41093843 8.390000e-67 265.0
14 TraesCS3D01G368300 chr3A 82.468 308 39 10 1 308 640525334 640525626 5.050000e-64 255.0
15 TraesCS3D01G368300 chr3A 90.984 122 8 2 177 298 41093850 41093968 1.130000e-35 161.0
16 TraesCS3D01G368300 chr7A 81.388 1225 200 18 1751 2966 668042274 668041069 0.000000e+00 974.0
17 TraesCS3D01G368300 chr7A 74.047 1102 231 41 1732 2798 618676337 618677418 2.210000e-107 399.0
18 TraesCS3D01G368300 chr7B 79.197 947 167 18 1751 2684 639264981 639264052 7.180000e-177 630.0
19 TraesCS3D01G368300 chr7B 73.247 1241 261 48 1733 2930 580133673 580134885 1.720000e-103 387.0
20 TraesCS3D01G368300 chr7D 73.909 1100 236 36 1732 2798 537667822 537668903 1.030000e-105 394.0
21 TraesCS3D01G368300 chr5A 84.112 321 39 6 2266 2586 18097117 18096809 2.300000e-77 300.0
22 TraesCS3D01G368300 chr5A 82.222 315 32 11 3 315 465990709 465991001 2.350000e-62 250.0
23 TraesCS3D01G368300 chr2D 81.818 121 11 7 1057 1167 155554439 155554320 1.510000e-14 91.6
24 TraesCS3D01G368300 chr2D 84.000 100 11 5 207 304 477836094 477836190 1.510000e-14 91.6
25 TraesCS3D01G368300 chr2A 86.747 83 7 4 223 304 620739609 620739688 5.420000e-14 89.8
26 TraesCS3D01G368300 chr5D 82.609 92 10 6 1086 1176 135519765 135519851 4.220000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G368300 chr3D 481714036 481717974 3938 True 3264.000000 5650 100.000000 1 3939 2 chr3D.!!$R1 3938
1 TraesCS3D01G368300 chr3B 643269471 643276517 7046 True 1718.725000 3709 91.750000 881 3859 4 chr3B.!!$R3 2978
2 TraesCS3D01G368300 chr3B 643303700 643305012 1312 True 1118.000000 1118 82.420000 1722 3005 1 chr3B.!!$R1 1283
3 TraesCS3D01G368300 chr3A 624861842 624867046 5204 True 1411.666667 3216 85.068333 951 3859 3 chr3A.!!$R2 2908
4 TraesCS3D01G368300 chr3A 624911051 624911587 536 True 483.000000 483 83.086000 1722 2253 1 chr3A.!!$R1 531
5 TraesCS3D01G368300 chr7A 668041069 668042274 1205 True 974.000000 974 81.388000 1751 2966 1 chr7A.!!$R1 1215
6 TraesCS3D01G368300 chr7A 618676337 618677418 1081 False 399.000000 399 74.047000 1732 2798 1 chr7A.!!$F1 1066
7 TraesCS3D01G368300 chr7B 639264052 639264981 929 True 630.000000 630 79.197000 1751 2684 1 chr7B.!!$R1 933
8 TraesCS3D01G368300 chr7B 580133673 580134885 1212 False 387.000000 387 73.247000 1733 2930 1 chr7B.!!$F1 1197
9 TraesCS3D01G368300 chr7D 537667822 537668903 1081 False 394.000000 394 73.909000 1732 2798 1 chr7D.!!$F1 1066

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 456 0.108138 CATCGTTCCTGGTCTCCACC 60.108 60.0 0.0 0.0 44.10 4.61 F
470 471 0.320374 CCACCGTCTTTGCACCTCTA 59.680 55.0 0.0 0.0 0.00 2.43 F
929 930 0.327924 TGCCTCCAAATCCACATCGT 59.672 50.0 0.0 0.0 0.00 3.73 F
2803 8401 0.474184 ACTCTGAACCTTGGGGTGTG 59.526 55.0 0.0 0.0 46.67 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1672 3144 0.179000 AGAGGCGGATAGTTTGCTGG 59.821 55.0 0.00 0.00 0.00 4.85 R
1673 3145 1.293924 CAGAGGCGGATAGTTTGCTG 58.706 55.0 0.00 0.00 0.00 4.41 R
2831 8429 0.181114 CTGGCGGATGGATCCTTCAA 59.819 55.0 24.70 9.66 44.93 2.69 R
3872 9500 0.037605 GTAGCAAGTACTGGTGCCGT 60.038 55.0 14.54 2.01 41.88 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.803315 ACTTTTCCAAAAGAAGAGTCAAATAAC 57.197 29.630 16.91 0.00 44.44 1.89
29 30 8.746052 TTCCAAAAGAAGAGTCAAATAACTCA 57.254 30.769 6.79 0.00 46.65 3.41
30 31 8.746052 TCCAAAAGAAGAGTCAAATAACTCAA 57.254 30.769 6.79 0.00 46.65 3.02
31 32 9.184523 TCCAAAAGAAGAGTCAAATAACTCAAA 57.815 29.630 6.79 0.00 46.65 2.69
48 49 7.796958 AACTCAAAAATCTAATAAACAGCGC 57.203 32.000 0.00 0.00 0.00 5.92
49 50 6.021596 ACTCAAAAATCTAATAAACAGCGCG 58.978 36.000 0.00 0.00 0.00 6.86
50 51 5.328691 TCAAAAATCTAATAAACAGCGCGG 58.671 37.500 8.83 5.83 0.00 6.46
52 53 5.751243 AAAATCTAATAAACAGCGCGGAT 57.249 34.783 16.26 0.00 0.00 4.18
54 55 6.467723 AAATCTAATAAACAGCGCGGATAG 57.532 37.500 16.26 8.35 0.00 2.08
55 56 4.841443 TCTAATAAACAGCGCGGATAGA 57.159 40.909 16.26 10.38 0.00 1.98
56 57 5.190992 TCTAATAAACAGCGCGGATAGAA 57.809 39.130 16.26 0.00 0.00 2.10
58 59 4.732285 AATAAACAGCGCGGATAGAATG 57.268 40.909 16.26 0.12 0.00 2.67
59 60 1.299541 AAACAGCGCGGATAGAATGG 58.700 50.000 16.26 0.00 0.00 3.16
60 61 0.178068 AACAGCGCGGATAGAATGGT 59.822 50.000 16.26 0.00 0.00 3.55
62 63 1.411246 ACAGCGCGGATAGAATGGTTA 59.589 47.619 16.26 0.00 0.00 2.85
63 64 2.037251 ACAGCGCGGATAGAATGGTTAT 59.963 45.455 16.26 0.00 0.00 1.89
64 65 3.067106 CAGCGCGGATAGAATGGTTATT 58.933 45.455 8.83 0.00 0.00 1.40
67 68 3.496884 GCGCGGATAGAATGGTTATTTCA 59.503 43.478 8.83 0.00 0.00 2.69
68 69 4.377431 GCGCGGATAGAATGGTTATTTCAG 60.377 45.833 8.83 0.00 0.00 3.02
70 71 5.236478 CGCGGATAGAATGGTTATTTCAGTT 59.764 40.000 0.00 0.00 0.00 3.16
72 73 7.480810 GCGGATAGAATGGTTATTTCAGTTTT 58.519 34.615 0.00 0.00 0.00 2.43
73 74 7.644157 GCGGATAGAATGGTTATTTCAGTTTTC 59.356 37.037 0.00 0.00 0.00 2.29
74 75 7.850982 CGGATAGAATGGTTATTTCAGTTTTCG 59.149 37.037 0.00 0.00 0.00 3.46
75 76 7.644157 GGATAGAATGGTTATTTCAGTTTTCGC 59.356 37.037 0.00 0.00 0.00 4.70
76 77 5.390613 AGAATGGTTATTTCAGTTTTCGCG 58.609 37.500 0.00 0.00 0.00 5.87
82 83 5.908499 GGTTATTTCAGTTTTCGCGTTGTTA 59.092 36.000 5.77 0.00 0.00 2.41
83 84 6.579666 GGTTATTTCAGTTTTCGCGTTGTTAT 59.420 34.615 5.77 0.59 0.00 1.89
84 85 7.408921 GGTTATTTCAGTTTTCGCGTTGTTATG 60.409 37.037 5.77 0.00 0.00 1.90
85 86 4.797693 TTCAGTTTTCGCGTTGTTATGA 57.202 36.364 5.77 2.19 0.00 2.15
86 87 4.797693 TCAGTTTTCGCGTTGTTATGAA 57.202 36.364 5.77 0.00 0.00 2.57
87 88 5.351233 TCAGTTTTCGCGTTGTTATGAAT 57.649 34.783 5.77 0.00 0.00 2.57
88 89 5.379003 TCAGTTTTCGCGTTGTTATGAATC 58.621 37.500 5.77 0.00 0.00 2.52
89 90 5.050023 TCAGTTTTCGCGTTGTTATGAATCA 60.050 36.000 5.77 0.00 0.00 2.57
90 91 5.058008 CAGTTTTCGCGTTGTTATGAATCAC 59.942 40.000 5.77 0.00 0.00 3.06
91 92 3.362281 TTCGCGTTGTTATGAATCACG 57.638 42.857 5.77 0.00 0.00 4.35
92 93 2.330286 TCGCGTTGTTATGAATCACGT 58.670 42.857 5.77 0.00 0.00 4.49
93 94 3.500014 TCGCGTTGTTATGAATCACGTA 58.500 40.909 5.77 0.00 0.00 3.57
94 95 3.544682 TCGCGTTGTTATGAATCACGTAG 59.455 43.478 5.77 0.00 0.00 3.51
95 96 3.594312 GCGTTGTTATGAATCACGTAGC 58.406 45.455 0.00 0.00 0.00 3.58
97 98 3.594312 GTTGTTATGAATCACGTAGCGC 58.406 45.455 0.00 0.00 0.00 5.92
98 99 3.159353 TGTTATGAATCACGTAGCGCT 57.841 42.857 17.26 17.26 0.00 5.92
99 100 4.295857 TGTTATGAATCACGTAGCGCTA 57.704 40.909 14.45 14.45 0.00 4.26
100 101 4.674475 TGTTATGAATCACGTAGCGCTAA 58.326 39.130 20.73 3.40 0.00 3.09
112 113 3.566261 CGCTAAGCAGGTGTGGTG 58.434 61.111 0.00 0.00 33.61 4.17
114 115 1.073199 GCTAAGCAGGTGTGGTGGT 59.927 57.895 0.00 0.00 33.61 4.16
115 116 0.537371 GCTAAGCAGGTGTGGTGGTT 60.537 55.000 0.00 0.00 39.00 3.67
116 117 1.271163 GCTAAGCAGGTGTGGTGGTTA 60.271 52.381 0.00 0.00 36.94 2.85
117 118 2.699954 CTAAGCAGGTGTGGTGGTTAG 58.300 52.381 7.45 7.45 44.89 2.34
118 119 0.537371 AAGCAGGTGTGGTGGTTAGC 60.537 55.000 0.00 0.00 33.93 3.09
119 120 1.971695 GCAGGTGTGGTGGTTAGCC 60.972 63.158 0.00 0.00 0.00 3.93
132 133 3.826524 TGGTTAGCCAAACATTCTGTGA 58.173 40.909 0.00 0.00 42.83 3.58
133 134 3.820467 TGGTTAGCCAAACATTCTGTGAG 59.180 43.478 0.00 0.00 42.83 3.51
134 135 3.821033 GGTTAGCCAAACATTCTGTGAGT 59.179 43.478 2.34 0.00 40.08 3.41
135 136 4.278419 GGTTAGCCAAACATTCTGTGAGTT 59.722 41.667 2.34 0.00 40.08 3.01
136 137 5.452777 GTTAGCCAAACATTCTGTGAGTTC 58.547 41.667 0.00 0.00 38.05 3.01
137 138 3.825328 AGCCAAACATTCTGTGAGTTCT 58.175 40.909 0.00 0.00 0.00 3.01
138 139 4.973168 AGCCAAACATTCTGTGAGTTCTA 58.027 39.130 0.00 0.00 0.00 2.10
140 141 4.378874 GCCAAACATTCTGTGAGTTCTAGC 60.379 45.833 0.00 0.00 0.00 3.42
141 142 4.999950 CCAAACATTCTGTGAGTTCTAGCT 59.000 41.667 0.00 0.00 0.00 3.32
142 143 5.471456 CCAAACATTCTGTGAGTTCTAGCTT 59.529 40.000 0.00 0.00 0.00 3.74
143 144 6.016777 CCAAACATTCTGTGAGTTCTAGCTTT 60.017 38.462 0.00 0.00 0.00 3.51
144 145 6.793492 AACATTCTGTGAGTTCTAGCTTTC 57.207 37.500 0.00 0.00 0.00 2.62
145 146 5.858381 ACATTCTGTGAGTTCTAGCTTTCA 58.142 37.500 0.00 0.00 0.00 2.69
146 147 5.698545 ACATTCTGTGAGTTCTAGCTTTCAC 59.301 40.000 0.00 11.21 40.17 3.18
147 148 3.902150 TCTGTGAGTTCTAGCTTTCACG 58.098 45.455 0.00 9.13 42.09 4.35
148 149 2.989840 CTGTGAGTTCTAGCTTTCACGG 59.010 50.000 11.95 11.95 42.09 4.94
149 150 1.727335 GTGAGTTCTAGCTTTCACGGC 59.273 52.381 0.00 0.00 31.72 5.68
150 151 0.992802 GAGTTCTAGCTTTCACGGCG 59.007 55.000 4.80 4.80 34.52 6.46
151 152 1.014564 AGTTCTAGCTTTCACGGCGC 61.015 55.000 6.90 0.00 34.52 6.53
154 155 2.506217 TAGCTTTCACGGCGCGAG 60.506 61.111 12.10 5.13 34.52 5.03
157 158 2.470286 CTTTCACGGCGCGAGTTC 59.530 61.111 12.10 0.00 0.00 3.01
158 159 3.335259 CTTTCACGGCGCGAGTTCG 62.335 63.158 12.10 10.28 43.27 3.95
162 163 4.755614 ACGGCGCGAGTTCGACTC 62.756 66.667 12.10 0.00 41.71 3.36
164 165 4.117661 GGCGCGAGTTCGACTCCT 62.118 66.667 12.10 0.00 42.12 3.69
165 166 2.577378 GCGCGAGTTCGACTCCTC 60.577 66.667 12.10 3.45 42.12 3.71
170 171 0.651551 CGAGTTCGACTCCTCGTAGG 59.348 60.000 16.20 0.00 42.12 3.18
171 172 1.738365 CGAGTTCGACTCCTCGTAGGA 60.738 57.143 16.20 3.97 42.12 2.94
185 186 7.962964 TCCTCGTAGGAGCATATTATTTTTG 57.037 36.000 6.93 0.00 40.06 2.44
186 187 7.506114 TCCTCGTAGGAGCATATTATTTTTGT 58.494 34.615 6.93 0.00 40.06 2.83
187 188 7.656137 TCCTCGTAGGAGCATATTATTTTTGTC 59.344 37.037 6.93 0.00 40.06 3.18
188 189 7.657761 CCTCGTAGGAGCATATTATTTTTGTCT 59.342 37.037 6.93 0.00 37.67 3.41
189 190 8.958119 TCGTAGGAGCATATTATTTTTGTCTT 57.042 30.769 0.00 0.00 0.00 3.01
190 191 9.391006 TCGTAGGAGCATATTATTTTTGTCTTT 57.609 29.630 0.00 0.00 0.00 2.52
243 244 2.354729 GGCCGGCCCATATATGCA 59.645 61.111 36.64 0.00 0.00 3.96
244 245 1.750399 GGCCGGCCCATATATGCAG 60.750 63.158 36.64 2.19 0.00 4.41
246 247 1.750399 CCGGCCCATATATGCAGGC 60.750 63.158 19.42 19.42 44.99 4.85
250 251 1.375908 CCCATATATGCAGGCGCGT 60.376 57.895 8.43 0.00 42.97 6.01
251 252 1.638388 CCCATATATGCAGGCGCGTG 61.638 60.000 24.99 24.99 42.97 5.34
253 254 1.375908 ATATATGCAGGCGCGTGGG 60.376 57.895 29.18 7.64 42.97 4.61
271 272 1.227002 GCGCCGGAACCTCTCTAAG 60.227 63.158 5.05 0.00 0.00 2.18
273 274 1.227002 GCCGGAACCTCTCTAAGCG 60.227 63.158 5.05 0.00 0.00 4.68
274 275 1.437986 CCGGAACCTCTCTAAGCGG 59.562 63.158 0.00 0.00 0.00 5.52
275 276 1.227002 CGGAACCTCTCTAAGCGGC 60.227 63.158 0.00 0.00 0.00 6.53
277 278 1.878975 GAACCTCTCTAAGCGGCGC 60.879 63.158 26.86 26.86 0.00 6.53
278 279 2.558554 GAACCTCTCTAAGCGGCGCA 62.559 60.000 35.02 13.81 0.00 6.09
279 280 2.279120 CCTCTCTAAGCGGCGCAG 60.279 66.667 35.02 23.33 0.00 5.18
281 282 1.139734 CTCTCTAAGCGGCGCAGAA 59.860 57.895 35.02 17.29 0.00 3.02
282 283 0.869454 CTCTCTAAGCGGCGCAGAAG 60.869 60.000 35.02 25.47 0.00 2.85
284 285 3.567797 CTAAGCGGCGCAGAAGGC 61.568 66.667 35.02 5.06 39.90 4.35
294 295 2.247437 GCAGAAGGCGCCGATTAGG 61.247 63.158 23.20 11.09 44.97 2.69
295 296 1.441729 CAGAAGGCGCCGATTAGGA 59.558 57.895 23.20 0.00 45.00 2.94
296 297 0.598680 CAGAAGGCGCCGATTAGGAG 60.599 60.000 23.20 2.97 45.00 3.69
297 298 1.301009 GAAGGCGCCGATTAGGAGG 60.301 63.158 23.20 0.00 45.00 4.30
298 299 2.029307 GAAGGCGCCGATTAGGAGGT 62.029 60.000 23.20 0.00 45.00 3.85
301 302 1.007154 GCGCCGATTAGGAGGTCTC 60.007 63.158 0.00 0.00 45.00 3.36
326 327 4.357947 GCAGGCTGACGGACACGA 62.358 66.667 20.86 0.00 44.60 4.35
327 328 2.126307 CAGGCTGACGGACACGAG 60.126 66.667 9.42 0.00 44.60 4.18
356 357 4.058797 AAAAAGACGGGCACGAGG 57.941 55.556 19.19 0.00 44.60 4.63
357 358 1.599797 AAAAAGACGGGCACGAGGG 60.600 57.895 19.19 0.00 44.60 4.30
358 359 3.546714 AAAAGACGGGCACGAGGGG 62.547 63.158 19.19 0.00 44.60 4.79
366 367 4.011517 GCACGAGGGGGACGGAAA 62.012 66.667 0.00 0.00 34.93 3.13
367 368 2.745037 CACGAGGGGGACGGAAAA 59.255 61.111 0.00 0.00 34.93 2.29
392 393 3.119096 GGAACCAGCGACTTCGGC 61.119 66.667 0.02 0.00 40.23 5.54
393 394 2.357034 GAACCAGCGACTTCGGCA 60.357 61.111 0.02 0.00 40.23 5.69
401 402 4.329545 GACTTCGGCAGCCACCCA 62.330 66.667 13.30 0.00 0.00 4.51
402 403 4.643387 ACTTCGGCAGCCACCCAC 62.643 66.667 13.30 0.00 0.00 4.61
439 440 3.499737 CGGCTCCAACGCACCATC 61.500 66.667 0.00 0.00 0.00 3.51
440 441 3.499737 GGCTCCAACGCACCATCG 61.500 66.667 0.00 0.00 0.00 3.84
441 442 2.742372 GCTCCAACGCACCATCGT 60.742 61.111 0.00 0.00 45.58 3.73
449 450 2.100631 CGCACCATCGTTCCTGGTC 61.101 63.158 0.00 0.00 45.23 4.02
450 451 1.296715 GCACCATCGTTCCTGGTCT 59.703 57.895 0.00 0.00 45.23 3.85
453 454 0.544357 ACCATCGTTCCTGGTCTCCA 60.544 55.000 0.00 0.00 43.59 3.86
455 456 0.108138 CATCGTTCCTGGTCTCCACC 60.108 60.000 0.00 0.00 44.10 4.61
463 464 3.967715 GGTCTCCACCGTCTTTGC 58.032 61.111 0.00 0.00 31.06 3.68
464 465 1.070786 GGTCTCCACCGTCTTTGCA 59.929 57.895 0.00 0.00 31.06 4.08
466 467 1.070786 TCTCCACCGTCTTTGCACC 59.929 57.895 0.00 0.00 0.00 5.01
468 469 0.951040 CTCCACCGTCTTTGCACCTC 60.951 60.000 0.00 0.00 0.00 3.85
469 470 1.071471 CCACCGTCTTTGCACCTCT 59.929 57.895 0.00 0.00 0.00 3.69
470 471 0.320374 CCACCGTCTTTGCACCTCTA 59.680 55.000 0.00 0.00 0.00 2.43
471 472 1.429463 CACCGTCTTTGCACCTCTAC 58.571 55.000 0.00 0.00 0.00 2.59
472 473 1.045407 ACCGTCTTTGCACCTCTACA 58.955 50.000 0.00 0.00 0.00 2.74
473 474 1.414919 ACCGTCTTTGCACCTCTACAA 59.585 47.619 0.00 0.00 0.00 2.41
474 475 2.069273 CCGTCTTTGCACCTCTACAAG 58.931 52.381 0.00 0.00 0.00 3.16
904 905 0.512952 CCGCTTATTATCTGCCGTGC 59.487 55.000 0.00 0.00 0.00 5.34
924 925 1.670811 CGTATGTGCCTCCAAATCCAC 59.329 52.381 0.00 0.00 0.00 4.02
928 929 0.734889 GTGCCTCCAAATCCACATCG 59.265 55.000 0.00 0.00 0.00 3.84
929 930 0.327924 TGCCTCCAAATCCACATCGT 59.672 50.000 0.00 0.00 0.00 3.73
965 2396 0.861837 CTCGCGTTGATTGATAGGGC 59.138 55.000 5.77 0.00 0.00 5.19
967 2398 1.134521 TCGCGTTGATTGATAGGGCTT 60.135 47.619 5.77 0.00 0.00 4.35
1044 2475 1.256812 CCAGGTTGGGTGGAATTGTC 58.743 55.000 0.00 0.00 37.23 3.18
1060 2491 6.664816 TGGAATTGTCTGATTTCTTATGCCTT 59.335 34.615 0.00 0.00 0.00 4.35
1061 2492 6.976925 GGAATTGTCTGATTTCTTATGCCTTG 59.023 38.462 0.00 0.00 0.00 3.61
1117 2548 4.402474 GGGATTTTGACTTGTAGGGGATTG 59.598 45.833 0.00 0.00 0.00 2.67
1118 2549 4.402474 GGATTTTGACTTGTAGGGGATTGG 59.598 45.833 0.00 0.00 0.00 3.16
1119 2550 4.733077 TTTTGACTTGTAGGGGATTGGA 57.267 40.909 0.00 0.00 0.00 3.53
1120 2551 4.946160 TTTGACTTGTAGGGGATTGGAT 57.054 40.909 0.00 0.00 0.00 3.41
1121 2552 4.946160 TTGACTTGTAGGGGATTGGATT 57.054 40.909 0.00 0.00 0.00 3.01
1122 2553 4.946160 TGACTTGTAGGGGATTGGATTT 57.054 40.909 0.00 0.00 0.00 2.17
1123 2554 6.395780 TTGACTTGTAGGGGATTGGATTTA 57.604 37.500 0.00 0.00 0.00 1.40
1124 2555 6.395780 TGACTTGTAGGGGATTGGATTTAA 57.604 37.500 0.00 0.00 0.00 1.52
1125 2556 6.980577 TGACTTGTAGGGGATTGGATTTAAT 58.019 36.000 0.00 0.00 0.00 1.40
1126 2557 7.418378 TGACTTGTAGGGGATTGGATTTAATT 58.582 34.615 0.00 0.00 0.00 1.40
1326 2765 0.948678 GCACCACTAGGCAAAACGAA 59.051 50.000 0.00 0.00 39.06 3.85
1366 2805 6.373005 TCTAATCCCATGTTCTGAACTTGA 57.627 37.500 28.02 15.48 38.44 3.02
1376 2815 5.581605 TGTTCTGAACTTGAGCATTTGTTC 58.418 37.500 20.18 0.00 39.18 3.18
1464 2903 6.072286 GGACATGACAAATTGACAGATGAGTT 60.072 38.462 0.00 0.00 0.00 3.01
1465 2904 7.119699 GGACATGACAAATTGACAGATGAGTTA 59.880 37.037 0.00 0.00 0.00 2.24
1476 2915 6.692486 TGACAGATGAGTTAGAGGTTCTTTC 58.308 40.000 0.00 0.00 0.00 2.62
1492 2951 5.929415 GGTTCTTTCCTGTCTGAGTAAAGAG 59.071 44.000 0.00 0.00 37.45 2.85
1592 3052 5.662208 TCCATAATGAAATCCAGGTTTGCAT 59.338 36.000 0.00 0.00 0.00 3.96
1672 3144 8.739039 TGAACAACATTATATGCTTATATGCCC 58.261 33.333 8.04 0.00 0.00 5.36
1673 3145 7.645058 ACAACATTATATGCTTATATGCCCC 57.355 36.000 8.04 0.00 0.00 5.80
1706 3182 4.988540 TCCGCCTCTGTTTTGATATATTCG 59.011 41.667 0.00 0.00 0.00 3.34
2116 3611 4.870426 TGCCAGATACGTGAAGAAATTCTC 59.130 41.667 0.00 0.00 0.00 2.87
2174 3669 1.833630 TCATCTTCTTCCGCCACAGAT 59.166 47.619 0.00 0.00 0.00 2.90
2242 3737 2.338809 TGTCTCCCTGAGTTGAACCAT 58.661 47.619 0.00 0.00 0.00 3.55
2313 3808 2.328099 CCAACTCACGCCTCCTTGC 61.328 63.158 0.00 0.00 0.00 4.01
2710 8308 1.392853 CTCTTCGTTGCAGCTGACATC 59.607 52.381 20.43 12.69 0.00 3.06
2803 8401 0.474184 ACTCTGAACCTTGGGGTGTG 59.526 55.000 0.00 0.00 46.67 3.82
2930 8528 4.070716 CCCCAGCATGTTCTATTCTGATC 58.929 47.826 0.00 0.00 0.00 2.92
2984 8594 5.620879 GCCTACCAGCTTCTTCTGAAAATTG 60.621 44.000 0.00 0.00 36.19 2.32
3012 8622 1.338020 CTCAACAGGGGCAAACACTTC 59.662 52.381 0.00 0.00 0.00 3.01
3055 8666 2.099141 TCAGCATGAGTACTGCAACC 57.901 50.000 0.00 0.00 42.56 3.77
3136 8747 4.082571 GGTACGAGTGCTTAGAACCTGTTA 60.083 45.833 0.00 0.00 0.00 2.41
3137 8748 4.175787 ACGAGTGCTTAGAACCTGTTAG 57.824 45.455 0.00 0.00 0.00 2.34
3138 8749 3.056749 ACGAGTGCTTAGAACCTGTTAGG 60.057 47.826 0.00 0.00 42.49 2.69
3139 8750 3.192844 CGAGTGCTTAGAACCTGTTAGGA 59.807 47.826 1.13 0.00 37.67 2.94
3140 8751 4.675671 CGAGTGCTTAGAACCTGTTAGGAG 60.676 50.000 1.13 0.00 37.67 3.69
3141 8752 4.161102 AGTGCTTAGAACCTGTTAGGAGT 58.839 43.478 1.13 0.00 37.67 3.85
3142 8753 5.331069 AGTGCTTAGAACCTGTTAGGAGTA 58.669 41.667 1.13 0.00 37.67 2.59
3147 8758 3.865571 AGAACCTGTTAGGAGTACCCAA 58.134 45.455 1.13 0.00 37.67 4.12
3157 8768 1.677217 GGAGTACCCAAGCTTCTGCAG 60.677 57.143 7.63 7.63 36.88 4.41
3170 8781 4.453819 AGCTTCTGCAGTTACTTTCATCAC 59.546 41.667 14.67 0.00 42.74 3.06
3177 8788 5.466728 TGCAGTTACTTTCATCACTCAGTTC 59.533 40.000 0.00 0.00 0.00 3.01
3190 8801 3.755378 CACTCAGTTCTTAGCCATGCTTT 59.245 43.478 0.00 0.00 40.44 3.51
3205 8816 5.448089 GCCATGCTTTTGAAATTGCTATTGG 60.448 40.000 0.00 9.15 0.00 3.16
3209 8820 7.188468 TGCTTTTGAAATTGCTATTGGTTTC 57.812 32.000 0.00 0.00 0.00 2.78
3211 8822 6.618379 GCTTTTGAAATTGCTATTGGTTTCCG 60.618 38.462 0.00 0.00 31.33 4.30
3216 8827 0.963355 TGCTATTGGTTTCCGGTGCC 60.963 55.000 0.00 2.81 0.00 5.01
3328 8939 2.239400 CATTGGATCATCAGGCAGCAT 58.761 47.619 0.00 0.00 0.00 3.79
3358 8969 3.960102 TCTGCATCAGTTTTTCTTGGGTT 59.040 39.130 0.00 0.00 32.61 4.11
3364 8975 6.572519 CATCAGTTTTTCTTGGGTTTGAGAA 58.427 36.000 0.00 0.00 0.00 2.87
3381 8992 6.671614 TTGAGAACTGAATGTTTTGTACGT 57.328 33.333 0.00 0.00 39.30 3.57
3396 9007 9.701098 TGTTTTGTACGTAGTTATTTCATCTCT 57.299 29.630 0.00 0.00 37.78 3.10
3403 9014 7.268586 ACGTAGTTATTTCATCTCTCATGCTT 58.731 34.615 0.00 0.00 37.78 3.91
3431 9042 5.835113 TCAACTTTTCTTGGGTTTGAGAG 57.165 39.130 0.00 0.00 0.00 3.20
3464 9075 3.070018 GCTTCTGCATCAGTTGTACACT 58.930 45.455 0.00 0.00 39.41 3.55
3473 9084 5.518128 GCATCAGTTGTACACTCTGAGTATG 59.482 44.000 24.46 20.37 40.70 2.39
3513 9124 0.835941 ACAATCTCTGCTAGCCCCAG 59.164 55.000 13.29 2.91 0.00 4.45
3517 9128 0.685785 TCTCTGCTAGCCCCAGTCTG 60.686 60.000 13.29 0.00 0.00 3.51
3628 9251 1.081840 GCAACAGTTTCGCCTCTGC 60.082 57.895 0.00 0.00 35.37 4.26
3654 9277 1.742411 GCATCTAACTTAGGCGGCACA 60.742 52.381 13.08 0.00 0.00 4.57
3684 9307 1.681780 CCACCACCTCGGCATTTACAT 60.682 52.381 0.00 0.00 39.03 2.29
3699 9322 0.313987 TACATAGCCAGATGGACGCG 59.686 55.000 3.53 3.53 37.39 6.01
3712 9335 1.213013 GACGCGACAGGTCATCAGT 59.787 57.895 15.93 0.00 34.56 3.41
3713 9336 0.798771 GACGCGACAGGTCATCAGTC 60.799 60.000 15.93 0.00 34.56 3.51
3714 9337 1.212751 CGCGACAGGTCATCAGTCA 59.787 57.895 0.00 0.00 32.68 3.41
3715 9338 0.799917 CGCGACAGGTCATCAGTCAG 60.800 60.000 0.00 0.00 32.68 3.51
3797 9422 2.104792 TCCTCTGGGCACTATACATTGC 59.895 50.000 0.00 0.00 38.06 3.56
3801 9426 3.198409 TGGGCACTATACATTGCTCAG 57.802 47.619 0.00 0.00 44.42 3.35
3859 9487 8.164070 AGTTTAGGAGGAGAATTTAAGCAAGAA 58.836 33.333 0.00 0.00 0.00 2.52
3860 9488 8.454894 GTTTAGGAGGAGAATTTAAGCAAGAAG 58.545 37.037 0.00 0.00 0.00 2.85
3861 9489 6.133253 AGGAGGAGAATTTAAGCAAGAAGT 57.867 37.500 0.00 0.00 0.00 3.01
3862 9490 5.942826 AGGAGGAGAATTTAAGCAAGAAGTG 59.057 40.000 0.00 0.00 0.00 3.16
3863 9491 5.707764 GGAGGAGAATTTAAGCAAGAAGTGT 59.292 40.000 0.00 0.00 0.00 3.55
3864 9492 6.348868 GGAGGAGAATTTAAGCAAGAAGTGTG 60.349 42.308 0.00 0.00 0.00 3.82
3865 9493 6.299141 AGGAGAATTTAAGCAAGAAGTGTGA 58.701 36.000 0.00 0.00 0.00 3.58
3866 9494 6.429385 AGGAGAATTTAAGCAAGAAGTGTGAG 59.571 38.462 0.00 0.00 0.00 3.51
3867 9495 6.205658 GGAGAATTTAAGCAAGAAGTGTGAGT 59.794 38.462 0.00 0.00 0.00 3.41
3868 9496 7.387948 GGAGAATTTAAGCAAGAAGTGTGAGTA 59.612 37.037 0.00 0.00 0.00 2.59
3869 9497 8.854614 AGAATTTAAGCAAGAAGTGTGAGTAT 57.145 30.769 0.00 0.00 0.00 2.12
3870 9498 9.944376 AGAATTTAAGCAAGAAGTGTGAGTATA 57.056 29.630 0.00 0.00 0.00 1.47
3871 9499 9.974750 GAATTTAAGCAAGAAGTGTGAGTATAC 57.025 33.333 0.00 0.00 0.00 1.47
3872 9500 9.502091 AATTTAAGCAAGAAGTGTGAGTATACA 57.498 29.630 5.50 0.00 0.00 2.29
3879 9507 1.636988 GTGTGAGTATACACGGCACC 58.363 55.000 5.50 0.00 41.21 5.01
3880 9508 1.067425 GTGTGAGTATACACGGCACCA 60.067 52.381 5.50 0.00 41.21 4.17
3881 9509 1.203758 TGTGAGTATACACGGCACCAG 59.796 52.381 5.50 0.00 42.86 4.00
3882 9510 1.203994 GTGAGTATACACGGCACCAGT 59.796 52.381 5.50 0.00 32.23 4.00
3883 9511 2.424601 GTGAGTATACACGGCACCAGTA 59.575 50.000 5.50 0.00 32.23 2.74
3884 9512 2.424601 TGAGTATACACGGCACCAGTAC 59.575 50.000 5.50 0.00 0.00 2.73
3885 9513 2.686915 GAGTATACACGGCACCAGTACT 59.313 50.000 5.50 0.00 0.00 2.73
3886 9514 3.094572 AGTATACACGGCACCAGTACTT 58.905 45.455 5.50 0.00 0.00 2.24
3887 9515 2.380084 ATACACGGCACCAGTACTTG 57.620 50.000 0.00 0.00 0.00 3.16
3888 9516 0.320073 TACACGGCACCAGTACTTGC 60.320 55.000 10.53 10.53 38.06 4.01
3889 9517 1.301716 CACGGCACCAGTACTTGCT 60.302 57.895 16.95 0.00 38.85 3.91
3890 9518 0.037697 CACGGCACCAGTACTTGCTA 60.038 55.000 16.95 0.00 38.85 3.49
3891 9519 0.037605 ACGGCACCAGTACTTGCTAC 60.038 55.000 16.95 3.37 38.85 3.58
3892 9520 0.246635 CGGCACCAGTACTTGCTACT 59.753 55.000 16.95 0.00 38.85 2.57
3893 9521 1.736032 CGGCACCAGTACTTGCTACTC 60.736 57.143 16.95 2.45 38.85 2.59
3894 9522 1.405661 GGCACCAGTACTTGCTACTCC 60.406 57.143 16.95 0.00 38.85 3.85
3895 9523 1.405661 GCACCAGTACTTGCTACTCCC 60.406 57.143 11.53 0.00 32.90 4.30
3896 9524 2.180276 CACCAGTACTTGCTACTCCCT 58.820 52.381 0.00 0.00 32.90 4.20
3897 9525 2.166664 CACCAGTACTTGCTACTCCCTC 59.833 54.545 0.00 0.00 32.90 4.30
3898 9526 1.757699 CCAGTACTTGCTACTCCCTCC 59.242 57.143 0.00 0.00 32.90 4.30
3899 9527 1.405821 CAGTACTTGCTACTCCCTCCG 59.594 57.143 0.00 0.00 32.90 4.63
3900 9528 0.745468 GTACTTGCTACTCCCTCCGG 59.255 60.000 0.00 0.00 0.00 5.14
3901 9529 0.396695 TACTTGCTACTCCCTCCGGG 60.397 60.000 0.00 0.00 46.11 5.73
3914 9542 2.277084 CCTCCGGGAACTAAAATCACG 58.723 52.381 0.00 0.00 43.19 4.35
3915 9543 2.093869 CCTCCGGGAACTAAAATCACGA 60.094 50.000 0.00 0.00 46.38 4.35
3916 9544 2.928116 CTCCGGGAACTAAAATCACGAC 59.072 50.000 0.00 0.00 46.38 4.34
3917 9545 2.299582 TCCGGGAACTAAAATCACGACA 59.700 45.455 0.00 0.00 46.38 4.35
3918 9546 3.068560 CCGGGAACTAAAATCACGACAA 58.931 45.455 0.00 0.00 46.38 3.18
3919 9547 3.124636 CCGGGAACTAAAATCACGACAAG 59.875 47.826 0.00 0.00 46.38 3.16
3920 9548 3.991773 CGGGAACTAAAATCACGACAAGA 59.008 43.478 0.00 0.00 46.38 3.02
3921 9549 4.449743 CGGGAACTAAAATCACGACAAGAA 59.550 41.667 0.00 0.00 46.38 2.52
3922 9550 5.121768 CGGGAACTAAAATCACGACAAGAAT 59.878 40.000 0.00 0.00 46.38 2.40
3923 9551 6.348213 CGGGAACTAAAATCACGACAAGAATT 60.348 38.462 0.00 0.00 46.38 2.17
3924 9552 7.021790 GGGAACTAAAATCACGACAAGAATTC 58.978 38.462 0.00 0.00 0.00 2.17
3925 9553 7.094762 GGGAACTAAAATCACGACAAGAATTCT 60.095 37.037 0.88 0.88 0.00 2.40
3926 9554 7.746475 GGAACTAAAATCACGACAAGAATTCTG 59.254 37.037 9.17 6.08 0.00 3.02
3927 9555 7.962964 ACTAAAATCACGACAAGAATTCTGA 57.037 32.000 9.17 1.82 0.00 3.27
3928 9556 8.378172 ACTAAAATCACGACAAGAATTCTGAA 57.622 30.769 9.17 0.00 0.00 3.02
3929 9557 8.836413 ACTAAAATCACGACAAGAATTCTGAAA 58.164 29.630 9.17 0.00 0.00 2.69
3930 9558 7.914537 AAAATCACGACAAGAATTCTGAAAC 57.085 32.000 9.17 0.85 0.00 2.78
3931 9559 4.708868 TCACGACAAGAATTCTGAAACG 57.291 40.909 9.17 14.26 0.00 3.60
3932 9560 3.493129 TCACGACAAGAATTCTGAAACGG 59.507 43.478 9.17 7.46 0.00 4.44
3933 9561 3.493129 CACGACAAGAATTCTGAAACGGA 59.507 43.478 9.17 0.00 0.00 4.69
3934 9562 3.741344 ACGACAAGAATTCTGAAACGGAG 59.259 43.478 9.17 0.00 0.00 4.63
3935 9563 3.987868 CGACAAGAATTCTGAAACGGAGA 59.012 43.478 9.17 0.00 0.00 3.71
3936 9564 4.627467 CGACAAGAATTCTGAAACGGAGAT 59.373 41.667 9.17 0.00 0.00 2.75
3937 9565 5.805486 CGACAAGAATTCTGAAACGGAGATA 59.195 40.000 9.17 0.00 0.00 1.98
3938 9566 6.477033 CGACAAGAATTCTGAAACGGAGATAT 59.523 38.462 9.17 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.803315 GTTATTTGACTCTTCTTTTGGAAAAGT 57.197 29.630 10.83 0.00 44.37 2.66
4 5 8.746052 TGAGTTATTTGACTCTTCTTTTGGAA 57.254 30.769 6.59 0.00 44.99 3.53
5 6 8.746052 TTGAGTTATTTGACTCTTCTTTTGGA 57.254 30.769 6.59 0.00 44.99 3.53
6 7 9.801873 TTTTGAGTTATTTGACTCTTCTTTTGG 57.198 29.630 6.59 0.00 44.99 3.28
22 23 9.503427 GCGCTGTTTATTAGATTTTTGAGTTAT 57.497 29.630 0.00 0.00 0.00 1.89
23 24 7.690637 CGCGCTGTTTATTAGATTTTTGAGTTA 59.309 33.333 5.56 0.00 0.00 2.24
24 25 6.523201 CGCGCTGTTTATTAGATTTTTGAGTT 59.477 34.615 5.56 0.00 0.00 3.01
26 27 5.452302 CCGCGCTGTTTATTAGATTTTTGAG 59.548 40.000 5.56 0.00 0.00 3.02
27 28 5.122554 TCCGCGCTGTTTATTAGATTTTTGA 59.877 36.000 5.56 0.00 0.00 2.69
28 29 5.328691 TCCGCGCTGTTTATTAGATTTTTG 58.671 37.500 5.56 0.00 0.00 2.44
29 30 5.554822 TCCGCGCTGTTTATTAGATTTTT 57.445 34.783 5.56 0.00 0.00 1.94
30 31 5.751243 ATCCGCGCTGTTTATTAGATTTT 57.249 34.783 5.56 0.00 0.00 1.82
31 32 6.220930 TCTATCCGCGCTGTTTATTAGATTT 58.779 36.000 5.56 0.00 0.00 2.17
34 35 4.841443 TCTATCCGCGCTGTTTATTAGA 57.159 40.909 5.56 0.00 0.00 2.10
35 36 5.163953 CCATTCTATCCGCGCTGTTTATTAG 60.164 44.000 5.56 0.00 0.00 1.73
36 37 4.688879 CCATTCTATCCGCGCTGTTTATTA 59.311 41.667 5.56 0.00 0.00 0.98
38 39 3.067106 CCATTCTATCCGCGCTGTTTAT 58.933 45.455 5.56 0.00 0.00 1.40
39 40 2.159014 ACCATTCTATCCGCGCTGTTTA 60.159 45.455 5.56 0.00 0.00 2.01
40 41 1.299541 CCATTCTATCCGCGCTGTTT 58.700 50.000 5.56 0.00 0.00 2.83
41 42 0.178068 ACCATTCTATCCGCGCTGTT 59.822 50.000 5.56 0.00 0.00 3.16
42 43 0.178068 AACCATTCTATCCGCGCTGT 59.822 50.000 5.56 0.00 0.00 4.40
44 45 3.402628 AATAACCATTCTATCCGCGCT 57.597 42.857 5.56 0.00 0.00 5.92
45 46 3.496884 TGAAATAACCATTCTATCCGCGC 59.503 43.478 0.00 0.00 0.00 6.86
46 47 4.750098 ACTGAAATAACCATTCTATCCGCG 59.250 41.667 0.00 0.00 0.00 6.46
48 49 7.850982 CGAAAACTGAAATAACCATTCTATCCG 59.149 37.037 0.00 0.00 0.00 4.18
49 50 7.644157 GCGAAAACTGAAATAACCATTCTATCC 59.356 37.037 0.00 0.00 0.00 2.59
50 51 7.373441 CGCGAAAACTGAAATAACCATTCTATC 59.627 37.037 0.00 0.00 0.00 2.08
52 53 6.148150 ACGCGAAAACTGAAATAACCATTCTA 59.852 34.615 15.93 0.00 0.00 2.10
54 55 5.151389 ACGCGAAAACTGAAATAACCATTC 58.849 37.500 15.93 0.00 0.00 2.67
55 56 5.116069 ACGCGAAAACTGAAATAACCATT 57.884 34.783 15.93 0.00 0.00 3.16
56 57 4.759516 ACGCGAAAACTGAAATAACCAT 57.240 36.364 15.93 0.00 0.00 3.55
58 59 4.284485 ACAACGCGAAAACTGAAATAACC 58.716 39.130 15.93 0.00 0.00 2.85
59 60 5.859824 AACAACGCGAAAACTGAAATAAC 57.140 34.783 15.93 0.00 0.00 1.89
60 61 7.353497 TCATAACAACGCGAAAACTGAAATAA 58.647 30.769 15.93 0.00 0.00 1.40
62 63 5.753744 TCATAACAACGCGAAAACTGAAAT 58.246 33.333 15.93 0.00 0.00 2.17
63 64 5.158101 TCATAACAACGCGAAAACTGAAA 57.842 34.783 15.93 0.00 0.00 2.69
64 65 4.797693 TCATAACAACGCGAAAACTGAA 57.202 36.364 15.93 0.00 0.00 3.02
67 68 5.144359 GTGATTCATAACAACGCGAAAACT 58.856 37.500 15.93 0.00 0.00 2.66
68 69 4.027556 CGTGATTCATAACAACGCGAAAAC 59.972 41.667 15.93 0.00 36.76 2.43
70 71 3.184783 ACGTGATTCATAACAACGCGAAA 59.815 39.130 15.93 0.00 37.78 3.46
72 73 2.330286 ACGTGATTCATAACAACGCGA 58.670 42.857 15.93 0.00 37.78 5.87
73 74 2.780361 ACGTGATTCATAACAACGCG 57.220 45.000 3.53 3.53 39.71 6.01
74 75 3.594312 GCTACGTGATTCATAACAACGC 58.406 45.455 0.00 0.00 0.00 4.84
75 76 3.834302 CGCTACGTGATTCATAACAACG 58.166 45.455 0.00 0.00 0.00 4.10
76 77 3.306166 AGCGCTACGTGATTCATAACAAC 59.694 43.478 8.99 0.00 0.00 3.32
82 83 2.128035 GCTTAGCGCTACGTGATTCAT 58.872 47.619 18.63 0.00 35.14 2.57
83 84 1.135228 TGCTTAGCGCTACGTGATTCA 60.135 47.619 18.63 5.36 40.11 2.57
84 85 1.518929 CTGCTTAGCGCTACGTGATTC 59.481 52.381 18.63 2.54 40.11 2.52
85 86 1.560923 CTGCTTAGCGCTACGTGATT 58.439 50.000 18.63 0.00 40.11 2.57
86 87 0.249073 CCTGCTTAGCGCTACGTGAT 60.249 55.000 18.63 0.00 40.11 3.06
87 88 1.138883 CCTGCTTAGCGCTACGTGA 59.861 57.895 18.63 0.73 40.11 4.35
88 89 1.153823 ACCTGCTTAGCGCTACGTG 60.154 57.895 18.63 11.51 40.11 4.49
89 90 1.153823 CACCTGCTTAGCGCTACGT 60.154 57.895 18.63 5.58 40.11 3.57
90 91 1.153823 ACACCTGCTTAGCGCTACG 60.154 57.895 18.63 17.20 40.11 3.51
91 92 1.084370 CCACACCTGCTTAGCGCTAC 61.084 60.000 18.63 7.42 40.11 3.58
92 93 1.218047 CCACACCTGCTTAGCGCTA 59.782 57.895 14.45 14.45 40.11 4.26
93 94 2.046892 CCACACCTGCTTAGCGCT 60.047 61.111 17.26 17.26 40.11 5.92
94 95 2.358737 ACCACACCTGCTTAGCGC 60.359 61.111 0.00 0.00 39.77 5.92
95 96 2.034879 CCACCACACCTGCTTAGCG 61.035 63.158 0.00 0.00 0.00 4.26
97 98 2.699954 CTAACCACCACACCTGCTTAG 58.300 52.381 0.00 0.00 0.00 2.18
98 99 1.271163 GCTAACCACCACACCTGCTTA 60.271 52.381 0.00 0.00 0.00 3.09
99 100 0.537371 GCTAACCACCACACCTGCTT 60.537 55.000 0.00 0.00 0.00 3.91
100 101 1.073199 GCTAACCACCACACCTGCT 59.927 57.895 0.00 0.00 0.00 4.24
102 103 1.454104 TGGCTAACCACCACACCTG 59.546 57.895 0.00 0.00 42.67 4.00
103 104 3.995597 TGGCTAACCACCACACCT 58.004 55.556 0.00 0.00 42.67 4.00
123 124 5.164012 CGTGAAAGCTAGAACTCACAGAATG 60.164 44.000 14.89 0.49 46.00 2.67
124 125 4.926238 CGTGAAAGCTAGAACTCACAGAAT 59.074 41.667 14.89 0.00 38.46 2.40
126 127 3.305403 CCGTGAAAGCTAGAACTCACAGA 60.305 47.826 14.89 0.00 38.46 3.41
127 128 2.989840 CCGTGAAAGCTAGAACTCACAG 59.010 50.000 14.89 9.50 38.46 3.66
128 129 2.866460 GCCGTGAAAGCTAGAACTCACA 60.866 50.000 14.89 0.00 38.46 3.58
129 130 1.727335 GCCGTGAAAGCTAGAACTCAC 59.273 52.381 0.00 1.19 35.82 3.51
131 132 0.992802 CGCCGTGAAAGCTAGAACTC 59.007 55.000 0.00 0.00 0.00 3.01
132 133 1.014564 GCGCCGTGAAAGCTAGAACT 61.015 55.000 0.00 0.00 0.00 3.01
133 134 1.420312 GCGCCGTGAAAGCTAGAAC 59.580 57.895 0.00 0.00 0.00 3.01
134 135 2.092291 CGCGCCGTGAAAGCTAGAA 61.092 57.895 0.00 0.00 0.00 2.10
135 136 2.506217 CGCGCCGTGAAAGCTAGA 60.506 61.111 0.00 0.00 0.00 2.43
136 137 2.506217 TCGCGCCGTGAAAGCTAG 60.506 61.111 0.00 0.00 0.00 3.42
137 138 2.506217 CTCGCGCCGTGAAAGCTA 60.506 61.111 0.00 0.00 0.00 3.32
138 139 4.664677 ACTCGCGCCGTGAAAGCT 62.665 61.111 0.00 0.00 0.00 3.74
140 141 2.470286 GAACTCGCGCCGTGAAAG 59.530 61.111 0.00 0.00 0.00 2.62
141 142 3.399770 CGAACTCGCGCCGTGAAA 61.400 61.111 0.00 0.00 0.00 2.69
142 143 4.331166 TCGAACTCGCGCCGTGAA 62.331 61.111 0.00 0.00 39.60 3.18
145 146 4.755614 GAGTCGAACTCGCGCCGT 62.756 66.667 0.00 0.00 35.28 5.68
147 148 4.117661 AGGAGTCGAACTCGCGCC 62.118 66.667 0.00 7.75 45.96 6.53
148 149 2.577378 GAGGAGTCGAACTCGCGC 60.577 66.667 0.00 0.00 45.96 6.86
161 162 7.506114 ACAAAAATAATATGCTCCTACGAGGA 58.494 34.615 0.00 0.00 43.43 3.71
162 163 7.657761 AGACAAAAATAATATGCTCCTACGAGG 59.342 37.037 0.00 0.00 36.55 4.63
163 164 8.594881 AGACAAAAATAATATGCTCCTACGAG 57.405 34.615 0.00 0.00 39.33 4.18
164 165 8.958119 AAGACAAAAATAATATGCTCCTACGA 57.042 30.769 0.00 0.00 0.00 3.43
226 227 1.750399 CTGCATATATGGGCCGGCC 60.750 63.158 38.57 38.57 0.00 6.13
227 228 1.750399 CCTGCATATATGGGCCGGC 60.750 63.158 21.18 21.18 0.00 6.13
228 229 1.750399 GCCTGCATATATGGGCCGG 60.750 63.158 17.70 10.29 38.77 6.13
229 230 2.108514 CGCCTGCATATATGGGCCG 61.109 63.158 20.82 14.53 41.35 6.13
230 231 2.409870 GCGCCTGCATATATGGGCC 61.410 63.158 20.82 13.14 41.35 5.80
231 232 2.753966 CGCGCCTGCATATATGGGC 61.754 63.158 18.25 18.25 42.97 5.36
232 233 1.375908 ACGCGCCTGCATATATGGG 60.376 57.895 14.51 8.96 42.97 4.00
233 234 1.638388 CCACGCGCCTGCATATATGG 61.638 60.000 14.51 0.00 42.97 2.74
234 235 1.638388 CCCACGCGCCTGCATATATG 61.638 60.000 5.73 8.45 42.97 1.78
235 236 1.375908 CCCACGCGCCTGCATATAT 60.376 57.895 5.73 0.00 42.97 0.86
236 237 2.030412 CCCACGCGCCTGCATATA 59.970 61.111 5.73 0.00 42.97 0.86
253 254 1.227002 CTTAGAGAGGTTCCGGCGC 60.227 63.158 0.00 0.00 0.00 6.53
254 255 1.227002 GCTTAGAGAGGTTCCGGCG 60.227 63.158 0.00 0.00 0.00 6.46
257 258 1.227002 GCCGCTTAGAGAGGTTCCG 60.227 63.158 0.00 0.00 37.51 4.30
259 260 1.878975 GCGCCGCTTAGAGAGGTTC 60.879 63.158 0.00 0.00 37.51 3.62
260 261 2.184579 GCGCCGCTTAGAGAGGTT 59.815 61.111 0.00 0.00 37.51 3.50
261 262 3.068691 TGCGCCGCTTAGAGAGGT 61.069 61.111 11.67 0.00 37.51 3.85
262 263 2.279120 CTGCGCCGCTTAGAGAGG 60.279 66.667 11.67 0.00 38.30 3.69
264 265 1.139734 CTTCTGCGCCGCTTAGAGA 59.860 57.895 11.67 0.85 0.00 3.10
265 266 1.880340 CCTTCTGCGCCGCTTAGAG 60.880 63.158 11.67 0.00 0.00 2.43
277 278 0.598680 CTCCTAATCGGCGCCTTCTG 60.599 60.000 26.68 9.07 0.00 3.02
278 279 1.742768 CTCCTAATCGGCGCCTTCT 59.257 57.895 26.68 10.66 0.00 2.85
279 280 1.301009 CCTCCTAATCGGCGCCTTC 60.301 63.158 26.68 0.00 0.00 3.46
281 282 2.444140 ACCTCCTAATCGGCGCCT 60.444 61.111 26.68 8.66 0.00 5.52
282 283 2.029221 GACCTCCTAATCGGCGCC 59.971 66.667 19.07 19.07 0.00 6.53
284 285 1.660917 GGAGACCTCCTAATCGGCG 59.339 63.158 8.76 0.00 46.16 6.46
309 310 4.357947 TCGTGTCCGTCAGCCTGC 62.358 66.667 0.00 0.00 35.01 4.85
310 311 2.126307 CTCGTGTCCGTCAGCCTG 60.126 66.667 0.00 0.00 35.01 4.85
311 312 4.057428 GCTCGTGTCCGTCAGCCT 62.057 66.667 0.00 0.00 30.13 4.58
314 315 4.778415 CCCGCTCGTGTCCGTCAG 62.778 72.222 0.00 0.00 35.01 3.51
339 340 1.599797 CCCTCGTGCCCGTCTTTTT 60.600 57.895 0.00 0.00 35.01 1.94
341 342 4.016706 CCCCTCGTGCCCGTCTTT 62.017 66.667 0.00 0.00 35.01 2.52
349 350 3.540367 TTTTCCGTCCCCCTCGTGC 62.540 63.158 0.00 0.00 0.00 5.34
350 351 1.071814 TTTTTCCGTCCCCCTCGTG 59.928 57.895 0.00 0.00 0.00 4.35
351 352 3.566041 TTTTTCCGTCCCCCTCGT 58.434 55.556 0.00 0.00 0.00 4.18
370 371 1.605753 GAAGTCGCTGGTTCCCTTTT 58.394 50.000 0.00 0.00 0.00 2.27
372 373 1.004918 CGAAGTCGCTGGTTCCCTT 60.005 57.895 0.00 0.00 0.00 3.95
373 374 2.657237 CGAAGTCGCTGGTTCCCT 59.343 61.111 0.00 0.00 0.00 4.20
374 375 2.434359 CCGAAGTCGCTGGTTCCC 60.434 66.667 0.00 0.00 38.18 3.97
375 376 3.119096 GCCGAAGTCGCTGGTTCC 61.119 66.667 0.00 0.00 38.18 3.62
376 377 2.357034 TGCCGAAGTCGCTGGTTC 60.357 61.111 0.00 0.00 38.18 3.62
384 385 4.329545 TGGGTGGCTGCCGAAGTC 62.330 66.667 14.98 2.46 0.00 3.01
385 386 4.643387 GTGGGTGGCTGCCGAAGT 62.643 66.667 14.98 0.00 0.00 3.01
423 424 3.499737 CGATGGTGCGTTGGAGCC 61.500 66.667 0.00 0.00 36.02 4.70
424 425 2.742372 ACGATGGTGCGTTGGAGC 60.742 61.111 0.00 0.00 42.71 4.70
435 436 0.108138 GTGGAGACCAGGAACGATGG 60.108 60.000 0.00 0.00 43.87 3.51
436 437 0.108138 GGTGGAGACCAGGAACGATG 60.108 60.000 0.00 0.00 42.59 3.84
437 438 1.605058 CGGTGGAGACCAGGAACGAT 61.605 60.000 0.00 0.00 43.33 3.73
439 440 2.261671 CGGTGGAGACCAGGAACG 59.738 66.667 0.00 0.00 43.33 3.95
440 441 1.186267 AGACGGTGGAGACCAGGAAC 61.186 60.000 0.00 0.00 43.33 3.62
441 442 0.471211 AAGACGGTGGAGACCAGGAA 60.471 55.000 0.00 0.00 43.33 3.36
442 443 0.471211 AAAGACGGTGGAGACCAGGA 60.471 55.000 0.00 0.00 43.33 3.86
443 444 0.320771 CAAAGACGGTGGAGACCAGG 60.321 60.000 0.00 0.00 43.33 4.45
444 445 0.951040 GCAAAGACGGTGGAGACCAG 60.951 60.000 0.00 0.00 43.33 4.00
445 446 1.070786 GCAAAGACGGTGGAGACCA 59.929 57.895 0.00 0.00 43.33 4.02
448 449 1.070786 GGTGCAAAGACGGTGGAGA 59.929 57.895 0.00 0.00 0.00 3.71
449 450 0.951040 GAGGTGCAAAGACGGTGGAG 60.951 60.000 0.00 0.00 0.00 3.86
450 451 1.070786 GAGGTGCAAAGACGGTGGA 59.929 57.895 0.00 0.00 0.00 4.02
453 454 1.045407 TGTAGAGGTGCAAAGACGGT 58.955 50.000 0.00 0.00 0.00 4.83
880 881 3.057456 ACGGCAGATAATAAGCGGTAGAG 60.057 47.826 0.00 0.00 39.55 2.43
881 882 2.889045 ACGGCAGATAATAAGCGGTAGA 59.111 45.455 0.00 0.00 39.55 2.59
882 883 2.987149 CACGGCAGATAATAAGCGGTAG 59.013 50.000 0.00 0.00 39.36 3.18
883 884 2.864882 GCACGGCAGATAATAAGCGGTA 60.865 50.000 0.00 0.00 39.36 4.02
884 885 1.865865 CACGGCAGATAATAAGCGGT 58.134 50.000 0.00 0.00 41.58 5.68
885 886 0.512952 GCACGGCAGATAATAAGCGG 59.487 55.000 0.00 0.00 35.12 5.52
893 894 0.874175 GCACATACGCACGGCAGATA 60.874 55.000 0.00 0.00 0.00 1.98
904 905 1.670811 GTGGATTTGGAGGCACATACG 59.329 52.381 0.00 0.00 0.00 3.06
949 954 2.288666 TCAAGCCCTATCAATCAACGC 58.711 47.619 0.00 0.00 0.00 4.84
965 2396 1.394917 CCAGAACCGAGCGAAATCAAG 59.605 52.381 0.00 0.00 0.00 3.02
967 2398 0.320374 ACCAGAACCGAGCGAAATCA 59.680 50.000 0.00 0.00 0.00 2.57
1044 2475 4.396166 ACCGAACAAGGCATAAGAAATCAG 59.604 41.667 0.00 0.00 33.69 2.90
1118 2549 7.038302 GGGAATGGAGGGGGATTAAATTAAATC 60.038 40.741 0.00 0.00 35.51 2.17
1119 2550 6.792473 GGGAATGGAGGGGGATTAAATTAAAT 59.208 38.462 0.00 0.00 0.00 1.40
1120 2551 6.067298 AGGGAATGGAGGGGGATTAAATTAAA 60.067 38.462 0.00 0.00 0.00 1.52
1121 2552 5.441768 AGGGAATGGAGGGGGATTAAATTAA 59.558 40.000 0.00 0.00 0.00 1.40
1122 2553 4.994869 AGGGAATGGAGGGGGATTAAATTA 59.005 41.667 0.00 0.00 0.00 1.40
1123 2554 3.805397 AGGGAATGGAGGGGGATTAAATT 59.195 43.478 0.00 0.00 0.00 1.82
1124 2555 3.142787 CAGGGAATGGAGGGGGATTAAAT 59.857 47.826 0.00 0.00 0.00 1.40
1125 2556 2.517980 CAGGGAATGGAGGGGGATTAAA 59.482 50.000 0.00 0.00 0.00 1.52
1126 2557 2.143602 CAGGGAATGGAGGGGGATTAA 58.856 52.381 0.00 0.00 0.00 1.40
1326 2765 4.913335 TTAGAAATACGACGGATGCTCT 57.087 40.909 9.30 9.30 0.00 4.09
1340 2779 7.890127 TCAAGTTCAGAACATGGGATTAGAAAT 59.110 33.333 16.58 0.00 31.41 2.17
1366 2805 1.978617 CCCCCGCAGAACAAATGCT 60.979 57.895 0.00 0.00 41.61 3.79
1376 2815 1.070445 CTTATGAGCTCCCCCGCAG 59.930 63.158 12.15 0.00 0.00 5.18
1406 2845 1.323412 AACACGGGCAAAGCACATAA 58.677 45.000 0.00 0.00 0.00 1.90
1464 2903 4.742012 ACTCAGACAGGAAAGAACCTCTA 58.258 43.478 0.00 0.00 38.32 2.43
1465 2904 3.582164 ACTCAGACAGGAAAGAACCTCT 58.418 45.455 0.00 0.00 38.32 3.69
1476 2915 2.354203 GCCACCTCTTTACTCAGACAGG 60.354 54.545 0.00 0.00 0.00 4.00
1492 2951 2.282783 GGAACCATGTTGGGCCACC 61.283 63.158 5.23 0.00 43.37 4.61
1584 3044 6.254281 ACTTGTTCTACACATATGCAAACC 57.746 37.500 1.58 0.00 34.43 3.27
1670 3142 1.823899 GGCGGATAGTTTGCTGGGG 60.824 63.158 0.00 0.00 0.00 4.96
1671 3143 0.815615 GAGGCGGATAGTTTGCTGGG 60.816 60.000 0.00 0.00 0.00 4.45
1672 3144 0.179000 AGAGGCGGATAGTTTGCTGG 59.821 55.000 0.00 0.00 0.00 4.85
1673 3145 1.293924 CAGAGGCGGATAGTTTGCTG 58.706 55.000 0.00 0.00 0.00 4.41
1706 3182 5.314923 TCAGATTAAAAACATGAGCTGGC 57.685 39.130 0.00 0.00 0.00 4.85
2116 3611 7.967890 AGAACCAGCAAAATAAAATTTCTGG 57.032 32.000 14.93 14.93 40.08 3.86
2174 3669 1.479730 TGCATCAACAACAAGGCAACA 59.520 42.857 0.00 0.00 41.41 3.33
2313 3808 6.318900 GTCAAATAGGGAGGATTTTGTACTGG 59.681 42.308 0.00 0.00 32.33 4.00
2518 4026 1.818674 GGTTTCGAATCCATGCTTGGT 59.181 47.619 18.43 0.00 44.06 3.67
2710 8308 1.895131 CAAGAAAATGGTGGGGTCCTG 59.105 52.381 0.00 0.00 0.00 3.86
2803 8401 1.434696 CTCATTGCCCAACCATCGC 59.565 57.895 0.00 0.00 0.00 4.58
2831 8429 0.181114 CTGGCGGATGGATCCTTCAA 59.819 55.000 24.70 9.66 44.93 2.69
2930 8528 1.194547 CCACGACAACAATCACTTCCG 59.805 52.381 0.00 0.00 0.00 4.30
3012 8622 1.224075 CATCCTGTATCAAGCCGCAG 58.776 55.000 0.00 0.00 0.00 5.18
3067 8678 8.940952 CAGGTTTAGAGAAACTGAAGATAAAGG 58.059 37.037 0.00 0.00 43.83 3.11
3068 8679 8.940952 CCAGGTTTAGAGAAACTGAAGATAAAG 58.059 37.037 5.44 0.00 43.83 1.85
3072 8683 5.221925 TGCCAGGTTTAGAGAAACTGAAGAT 60.222 40.000 5.44 0.00 43.83 2.40
3136 8747 0.615850 GCAGAAGCTTGGGTACTCCT 59.384 55.000 2.10 0.00 37.91 3.69
3137 8748 0.324943 TGCAGAAGCTTGGGTACTCC 59.675 55.000 2.10 0.00 42.74 3.85
3138 8749 1.002544 ACTGCAGAAGCTTGGGTACTC 59.997 52.381 23.35 0.00 42.74 2.59
3139 8750 1.059913 ACTGCAGAAGCTTGGGTACT 58.940 50.000 23.35 0.00 42.74 2.73
3140 8751 1.897560 AACTGCAGAAGCTTGGGTAC 58.102 50.000 23.35 0.00 42.74 3.34
3141 8752 2.637872 AGTAACTGCAGAAGCTTGGGTA 59.362 45.455 23.35 0.00 42.74 3.69
3142 8753 1.421646 AGTAACTGCAGAAGCTTGGGT 59.578 47.619 23.35 0.00 42.74 4.51
3147 8758 4.453819 GTGATGAAAGTAACTGCAGAAGCT 59.546 41.667 23.35 11.58 42.74 3.74
3157 8768 7.148557 GGCTAAGAACTGAGTGATGAAAGTAAC 60.149 40.741 0.00 0.00 0.00 2.50
3170 8781 4.456911 TCAAAAGCATGGCTAAGAACTGAG 59.543 41.667 0.00 0.00 38.25 3.35
3177 8788 4.933400 AGCAATTTCAAAAGCATGGCTAAG 59.067 37.500 0.00 0.00 38.25 2.18
3190 8801 4.282195 ACCGGAAACCAATAGCAATTTCAA 59.718 37.500 9.46 0.00 33.58 2.69
3211 8822 2.432628 CGAGTCAGTTCCGGCACC 60.433 66.667 0.00 0.00 0.00 5.01
3216 8827 1.419374 CTCAAACCGAGTCAGTTCCG 58.581 55.000 0.00 0.00 36.94 4.30
3226 8837 1.868498 CAGGTAAAACGCTCAAACCGA 59.132 47.619 0.00 0.00 35.32 4.69
3242 8853 4.137543 GTCTTCACCTCATTCAAACAGGT 58.862 43.478 0.00 0.00 41.52 4.00
3303 8914 0.179009 CCTGATGATCCAATGCCGGT 60.179 55.000 1.90 0.00 0.00 5.28
3306 8917 0.959553 CTGCCTGATGATCCAATGCC 59.040 55.000 0.00 0.00 0.00 4.40
3345 8956 5.961272 TCAGTTCTCAAACCCAAGAAAAAC 58.039 37.500 0.00 0.00 35.92 2.43
3352 8963 5.930837 AAACATTCAGTTCTCAAACCCAA 57.069 34.783 0.00 0.00 40.26 4.12
3358 8969 6.671614 ACGTACAAAACATTCAGTTCTCAA 57.328 33.333 0.00 0.00 40.26 3.02
3381 8992 8.400947 GCAAAAGCATGAGAGATGAAATAACTA 58.599 33.333 0.00 0.00 0.00 2.24
3396 9007 5.603596 AGAAAAGTTGATGCAAAAGCATGA 58.396 33.333 7.79 0.00 0.00 3.07
3403 9014 4.751767 ACCCAAGAAAAGTTGATGCAAA 57.248 36.364 0.00 0.00 0.00 3.68
3413 9024 3.885297 TCAGCTCTCAAACCCAAGAAAAG 59.115 43.478 0.00 0.00 0.00 2.27
3414 9025 3.897239 TCAGCTCTCAAACCCAAGAAAA 58.103 40.909 0.00 0.00 0.00 2.29
3452 9063 7.664318 TCTTACATACTCAGAGTGTACAACTGA 59.336 37.037 23.42 23.42 40.07 3.41
3455 9066 8.913656 GTTTCTTACATACTCAGAGTGTACAAC 58.086 37.037 13.84 7.16 0.00 3.32
3628 9251 2.609459 CGCCTAAGTTAGATGCCAACAG 59.391 50.000 11.66 0.00 0.00 3.16
3644 9267 2.603473 AGGTCAGTGTGCCGCCTA 60.603 61.111 0.00 0.00 0.00 3.93
3654 9277 1.074471 AGGTGGTGGTCAGGTCAGT 60.074 57.895 0.00 0.00 0.00 3.41
3684 9307 2.004808 CTGTCGCGTCCATCTGGCTA 62.005 60.000 5.77 0.00 34.44 3.93
3695 9318 1.213013 GACTGATGACCTGTCGCGT 59.787 57.895 5.77 0.00 34.73 6.01
3699 9322 0.901124 AGGCTGACTGATGACCTGTC 59.099 55.000 0.00 0.00 42.13 3.51
3712 9335 1.833630 CAGGGTTACAGATCAGGCTGA 59.166 52.381 21.19 21.19 39.20 4.26
3713 9336 1.745141 GCAGGGTTACAGATCAGGCTG 60.745 57.143 8.58 8.58 41.63 4.85
3714 9337 0.543749 GCAGGGTTACAGATCAGGCT 59.456 55.000 0.00 0.00 0.00 4.58
3715 9338 0.464554 GGCAGGGTTACAGATCAGGC 60.465 60.000 0.00 0.00 0.00 4.85
3797 9422 3.334691 TCACGGCAATTAAAGGACTGAG 58.665 45.455 0.00 0.00 0.00 3.35
3801 9426 2.433436 ACCTCACGGCAATTAAAGGAC 58.567 47.619 0.00 0.00 0.00 3.85
3859 9487 1.203994 GGTGCCGTGTATACTCACACT 59.796 52.381 19.35 0.00 45.40 3.55
3860 9488 1.067425 TGGTGCCGTGTATACTCACAC 60.067 52.381 14.92 14.92 44.37 3.82
3861 9489 1.203758 CTGGTGCCGTGTATACTCACA 59.796 52.381 4.17 0.00 38.12 3.58
3862 9490 1.203994 ACTGGTGCCGTGTATACTCAC 59.796 52.381 4.17 6.94 35.28 3.51
3863 9491 1.552578 ACTGGTGCCGTGTATACTCA 58.447 50.000 4.17 0.00 0.00 3.41
3864 9492 2.686915 AGTACTGGTGCCGTGTATACTC 59.313 50.000 4.17 0.00 0.00 2.59
3865 9493 2.731572 AGTACTGGTGCCGTGTATACT 58.268 47.619 4.17 0.00 0.00 2.12
3866 9494 3.184541 CAAGTACTGGTGCCGTGTATAC 58.815 50.000 0.00 0.00 0.00 1.47
3867 9495 2.417651 GCAAGTACTGGTGCCGTGTATA 60.418 50.000 8.14 0.00 34.58 1.47
3868 9496 1.674817 GCAAGTACTGGTGCCGTGTAT 60.675 52.381 8.14 0.00 34.58 2.29
3869 9497 0.320073 GCAAGTACTGGTGCCGTGTA 60.320 55.000 8.14 0.00 34.58 2.90
3870 9498 1.597027 GCAAGTACTGGTGCCGTGT 60.597 57.895 8.14 0.00 34.58 4.49
3871 9499 0.037697 TAGCAAGTACTGGTGCCGTG 60.038 55.000 14.54 0.42 41.88 4.94
3872 9500 0.037605 GTAGCAAGTACTGGTGCCGT 60.038 55.000 14.54 2.01 41.88 5.68
3873 9501 0.246635 AGTAGCAAGTACTGGTGCCG 59.753 55.000 14.54 0.00 40.76 5.69
3874 9502 1.405661 GGAGTAGCAAGTACTGGTGCC 60.406 57.143 14.54 2.56 42.48 5.01
3875 9503 1.405661 GGGAGTAGCAAGTACTGGTGC 60.406 57.143 10.95 10.95 42.48 5.01
3876 9504 2.166664 GAGGGAGTAGCAAGTACTGGTG 59.833 54.545 0.00 0.00 42.48 4.17
3877 9505 2.458620 GAGGGAGTAGCAAGTACTGGT 58.541 52.381 0.00 0.00 42.48 4.00
3878 9506 1.757699 GGAGGGAGTAGCAAGTACTGG 59.242 57.143 0.00 0.00 42.48 4.00
3879 9507 1.405821 CGGAGGGAGTAGCAAGTACTG 59.594 57.143 0.00 0.00 42.48 2.74
3880 9508 1.765230 CGGAGGGAGTAGCAAGTACT 58.235 55.000 0.00 0.00 45.34 2.73
3895 9523 2.928116 GTCGTGATTTTAGTTCCCGGAG 59.072 50.000 0.73 0.00 0.00 4.63
3896 9524 2.299582 TGTCGTGATTTTAGTTCCCGGA 59.700 45.455 0.73 0.00 0.00 5.14
3897 9525 2.690786 TGTCGTGATTTTAGTTCCCGG 58.309 47.619 0.00 0.00 0.00 5.73
3898 9526 3.991773 TCTTGTCGTGATTTTAGTTCCCG 59.008 43.478 0.00 0.00 0.00 5.14
3899 9527 5.934935 TTCTTGTCGTGATTTTAGTTCCC 57.065 39.130 0.00 0.00 0.00 3.97
3900 9528 7.746475 CAGAATTCTTGTCGTGATTTTAGTTCC 59.254 37.037 4.86 0.00 0.00 3.62
3901 9529 8.495949 TCAGAATTCTTGTCGTGATTTTAGTTC 58.504 33.333 4.86 0.00 0.00 3.01
3902 9530 8.378172 TCAGAATTCTTGTCGTGATTTTAGTT 57.622 30.769 4.86 0.00 0.00 2.24
3903 9531 7.962964 TCAGAATTCTTGTCGTGATTTTAGT 57.037 32.000 4.86 0.00 0.00 2.24
3904 9532 9.107367 GTTTCAGAATTCTTGTCGTGATTTTAG 57.893 33.333 4.86 0.00 0.00 1.85
3905 9533 7.796660 CGTTTCAGAATTCTTGTCGTGATTTTA 59.203 33.333 4.86 0.00 0.00 1.52
3906 9534 6.632834 CGTTTCAGAATTCTTGTCGTGATTTT 59.367 34.615 4.86 0.00 0.00 1.82
3907 9535 6.136071 CGTTTCAGAATTCTTGTCGTGATTT 58.864 36.000 4.86 0.00 0.00 2.17
3908 9536 5.334105 CCGTTTCAGAATTCTTGTCGTGATT 60.334 40.000 4.86 0.00 0.00 2.57
3909 9537 4.152402 CCGTTTCAGAATTCTTGTCGTGAT 59.848 41.667 4.86 0.00 0.00 3.06
3910 9538 3.493129 CCGTTTCAGAATTCTTGTCGTGA 59.507 43.478 4.86 0.00 0.00 4.35
3911 9539 3.493129 TCCGTTTCAGAATTCTTGTCGTG 59.507 43.478 4.86 0.00 0.00 4.35
3912 9540 3.724374 TCCGTTTCAGAATTCTTGTCGT 58.276 40.909 4.86 0.00 0.00 4.34
3913 9541 3.987868 TCTCCGTTTCAGAATTCTTGTCG 59.012 43.478 4.86 8.40 0.00 4.35
3914 9542 7.778470 ATATCTCCGTTTCAGAATTCTTGTC 57.222 36.000 4.86 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.