Multiple sequence alignment - TraesCS3D01G368200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G368200 chr3D 100.000 2381 0 0 1 2381 481710082 481712462 0.000000e+00 4397
1 TraesCS3D01G368200 chr3A 91.265 1637 109 16 1 1620 624857898 624859517 0.000000e+00 2200
2 TraesCS3D01G368200 chr3A 91.915 235 10 4 1617 1846 624859777 624860007 1.060000e-83 320
3 TraesCS3D01G368200 chr3A 90.204 245 23 1 2046 2290 624860066 624860309 3.820000e-83 318
4 TraesCS3D01G368200 chr3B 92.138 1132 54 20 621 1738 643265837 643266947 0.000000e+00 1565
5 TraesCS3D01G368200 chr3B 91.573 178 14 1 1872 2048 795441181 795441358 6.570000e-61 244
6 TraesCS3D01G368200 chr3B 94.574 129 5 1 1722 1850 643266967 643267093 5.190000e-47 198
7 TraesCS3D01G368200 chr3B 88.079 151 10 3 376 523 643265354 643265499 3.150000e-39 172
8 TraesCS3D01G368200 chr3B 95.890 73 3 0 551 623 643265496 643265568 4.160000e-23 119
9 TraesCS3D01G368200 chr6D 91.538 260 19 1 120 379 348087605 348087861 2.910000e-94 355
10 TraesCS3D01G368200 chr6D 89.575 259 22 2 120 378 408691509 408691762 8.210000e-85 324
11 TraesCS3D01G368200 chr5B 90.458 262 22 1 117 378 447183240 447183498 2.270000e-90 342
12 TraesCS3D01G368200 chr5B 90.119 253 22 2 126 378 446430692 446430443 2.280000e-85 326
13 TraesCS3D01G368200 chr5B 93.902 164 10 0 1872 2035 146825773 146825610 5.080000e-62 248
14 TraesCS3D01G368200 chr5B 92.353 170 13 0 1872 2041 253187205 253187374 2.360000e-60 243
15 TraesCS3D01G368200 chr4D 90.980 255 20 1 126 380 145579518 145579769 8.150000e-90 340
16 TraesCS3D01G368200 chr7D 89.734 263 23 2 126 388 363048912 363048654 1.360000e-87 333
17 TraesCS3D01G368200 chr7D 93.413 167 10 1 1872 2037 62232640 62232474 1.830000e-61 246
18 TraesCS3D01G368200 chr5A 88.519 270 26 4 118 387 559822684 559822420 2.950000e-84 322
19 TraesCS3D01G368200 chr1B 88.390 267 27 3 113 378 533803277 533803540 3.820000e-83 318
20 TraesCS3D01G368200 chr1B 92.899 169 12 0 1872 2040 373900222 373900390 1.830000e-61 246
21 TraesCS3D01G368200 chr1B 92.857 168 12 0 1873 2040 378645744 378645911 6.570000e-61 244
22 TraesCS3D01G368200 chr1B 91.908 173 13 1 1872 2043 497751206 497751378 8.500000e-60 241
23 TraesCS3D01G368200 chr6A 94.444 162 9 0 1873 2034 6846957 6846796 1.410000e-62 250
24 TraesCS3D01G368200 chr4B 93.902 164 9 1 1873 2036 634730475 634730313 1.830000e-61 246
25 TraesCS3D01G368200 chr1A 77.285 361 54 19 997 1346 470300491 470300834 1.120000e-43 187
26 TraesCS3D01G368200 chr1D 76.731 361 53 21 997 1346 371186346 371186686 3.150000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G368200 chr3D 481710082 481712462 2380 False 4397.0 4397 100.00000 1 2381 1 chr3D.!!$F1 2380
1 TraesCS3D01G368200 chr3A 624857898 624860309 2411 False 946.0 2200 91.12800 1 2290 3 chr3A.!!$F1 2289
2 TraesCS3D01G368200 chr3B 643265354 643267093 1739 False 513.5 1565 92.67025 376 1850 4 chr3B.!!$F2 1474

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
896 1171 0.477204 ATATGGCAGCTCCTGTGCAT 59.523 50.0 0.0 0.0 43.12 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2191 2799 0.252197 ACTCTTAATGCGGGGTGGTC 59.748 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 9.353999 GACATTTTTATTTACTAGCCAAGTTGG 57.646 33.333 18.17 18.17 39.80 3.77
71 72 3.961408 ACTAGCCAAGTTGGATATCGTCT 59.039 43.478 26.52 12.98 37.81 4.18
76 77 4.271291 GCCAAGTTGGATATCGTCTCTTTC 59.729 45.833 26.52 0.00 40.96 2.62
82 83 4.442706 TGGATATCGTCTCTTTCTTTGCC 58.557 43.478 0.00 0.00 0.00 4.52
95 96 0.597377 CTTTGCCGGGAAAGTTGCAC 60.597 55.000 33.32 0.77 32.63 4.57
117 118 9.394767 TGCACAACATTAAATCTACTGATGTAT 57.605 29.630 0.00 0.00 32.44 2.29
139 140 9.116067 TGTATTCCTCCATTTTTATTTACTCCG 57.884 33.333 0.00 0.00 0.00 4.63
148 149 9.840427 CCATTTTTATTTACTCCGCATATTAGG 57.160 33.333 0.00 0.00 0.00 2.69
226 227 6.788598 AACATATGCACCACCAAATCAATA 57.211 33.333 1.58 0.00 0.00 1.90
233 234 4.081752 GCACCACCAAATCAATACCATTGA 60.082 41.667 4.19 4.19 0.00 2.57
236 237 7.104939 CACCACCAAATCAATACCATTGAATT 58.895 34.615 5.74 1.61 31.55 2.17
242 243 9.772973 CCAAATCAATACCATTGAATTCATCAT 57.227 29.630 9.40 0.00 38.03 2.45
486 489 7.644986 AAAAGAACTTCTACAATCACTCTCG 57.355 36.000 0.00 0.00 0.00 4.04
491 494 5.642686 ACTTCTACAATCACTCTCGCTAAC 58.357 41.667 0.00 0.00 0.00 2.34
568 571 1.222936 CTCCATCCAGCCTCCACAC 59.777 63.158 0.00 0.00 0.00 3.82
578 581 1.553690 GCCTCCACACCCTTCAGCTA 61.554 60.000 0.00 0.00 0.00 3.32
654 928 1.316266 CCACCATCCTCCTCCTCCT 59.684 63.158 0.00 0.00 0.00 3.69
667 941 5.952947 CCTCCTCCTCCTCATTATATAACGT 59.047 44.000 0.00 0.00 0.00 3.99
772 1046 1.359475 GTCGATCGTACTGCTCCCC 59.641 63.158 15.94 0.00 0.00 4.81
824 1099 1.392510 GCTTAAGTCCAAGGTAACGCG 59.607 52.381 3.53 3.53 46.39 6.01
879 1154 5.151389 CACGCCGCGCTCAATATATATATA 58.849 41.667 13.88 4.92 0.00 0.86
880 1155 5.800438 CACGCCGCGCTCAATATATATATAT 59.200 40.000 13.88 9.12 0.00 0.86
893 1168 9.433153 CAATATATATATATGGCAGCTCCTGTG 57.567 37.037 14.65 3.10 33.43 3.66
895 1170 1.130777 TATATGGCAGCTCCTGTGCA 58.869 50.000 0.00 0.00 43.12 4.57
896 1171 0.477204 ATATGGCAGCTCCTGTGCAT 59.523 50.000 0.00 0.00 43.12 3.96
984 1266 3.771160 GAGAGGGGCGGCGAAGAA 61.771 66.667 12.98 0.00 0.00 2.52
1394 1685 4.590487 GTGAAACCGCCGATCTCA 57.410 55.556 0.00 0.00 0.00 3.27
1395 1686 2.373938 GTGAAACCGCCGATCTCAG 58.626 57.895 0.00 0.00 0.00 3.35
1396 1687 0.389948 GTGAAACCGCCGATCTCAGT 60.390 55.000 0.00 0.00 0.00 3.41
1397 1688 0.320374 TGAAACCGCCGATCTCAGTT 59.680 50.000 0.00 0.00 0.00 3.16
1398 1689 0.721718 GAAACCGCCGATCTCAGTTG 59.278 55.000 0.00 0.00 0.00 3.16
1435 1726 2.648102 CGTCTCGTAGCTTCGCCG 60.648 66.667 8.00 6.41 0.00 6.46
1546 1841 0.403271 ACCTGTTCTTCCATGCTGCT 59.597 50.000 0.00 0.00 0.00 4.24
1684 2246 9.160496 AGATTTAATCTTCTCTGTCATGAACAC 57.840 33.333 0.99 0.00 35.76 3.32
1776 2378 4.892934 GGGTGATTGGCCAAATGTATAGAA 59.107 41.667 24.71 0.00 0.00 2.10
1777 2379 5.010012 GGGTGATTGGCCAAATGTATAGAAG 59.990 44.000 24.71 0.00 0.00 2.85
1778 2380 5.827797 GGTGATTGGCCAAATGTATAGAAGA 59.172 40.000 24.71 0.00 0.00 2.87
1783 2385 8.716674 ATTGGCCAAATGTATAGAAGATGAAT 57.283 30.769 24.71 0.00 0.00 2.57
1806 2408 2.126346 GCATTGAGTTGCGGTGGC 60.126 61.111 0.00 0.00 40.52 5.01
1850 2452 2.882137 TGGTTCGTCATTCAAAGGGTTC 59.118 45.455 0.00 0.00 0.00 3.62
1851 2453 3.146847 GGTTCGTCATTCAAAGGGTTCT 58.853 45.455 0.00 0.00 0.00 3.01
1858 2460 1.604604 TTCAAAGGGTTCTGCTTCCG 58.395 50.000 0.00 0.00 0.00 4.30
1872 2474 4.979943 TGCTTCCGCAATATCATTTTGA 57.020 36.364 0.00 0.00 44.62 2.69
1873 2475 5.321959 TGCTTCCGCAATATCATTTTGAA 57.678 34.783 0.00 0.00 44.62 2.69
1874 2476 5.904941 TGCTTCCGCAATATCATTTTGAAT 58.095 33.333 0.00 0.00 44.62 2.57
1875 2477 6.339730 TGCTTCCGCAATATCATTTTGAATT 58.660 32.000 0.00 0.00 44.62 2.17
1876 2478 7.487484 TGCTTCCGCAATATCATTTTGAATTA 58.513 30.769 0.00 0.00 44.62 1.40
1877 2479 7.978414 TGCTTCCGCAATATCATTTTGAATTAA 59.022 29.630 0.00 0.00 44.62 1.40
1878 2480 8.816144 GCTTCCGCAATATCATTTTGAATTAAA 58.184 29.630 0.00 0.00 35.78 1.52
1925 2527 9.570468 AAGTATATCACTAGATTTCTACACGGA 57.430 33.333 0.00 0.00 36.04 4.69
1926 2528 9.742144 AGTATATCACTAGATTTCTACACGGAT 57.258 33.333 0.00 0.00 34.98 4.18
1927 2529 9.776158 GTATATCACTAGATTTCTACACGGATG 57.224 37.037 0.00 0.00 35.67 3.51
1928 2530 6.716934 ATCACTAGATTTCTACACGGATGT 57.283 37.500 0.00 0.00 43.30 3.06
1929 2531 7.818997 ATCACTAGATTTCTACACGGATGTA 57.181 36.000 0.00 0.00 40.48 2.29
1930 2532 7.634671 TCACTAGATTTCTACACGGATGTAA 57.365 36.000 0.00 0.00 40.84 2.41
1931 2533 8.234136 TCACTAGATTTCTACACGGATGTAAT 57.766 34.615 0.00 0.00 40.84 1.89
1932 2534 8.692710 TCACTAGATTTCTACACGGATGTAATT 58.307 33.333 0.00 0.00 40.84 1.40
1933 2535 9.314321 CACTAGATTTCTACACGGATGTAATTT 57.686 33.333 0.00 0.00 40.84 1.82
1934 2536 9.530633 ACTAGATTTCTACACGGATGTAATTTC 57.469 33.333 0.00 0.00 40.84 2.17
1935 2537 9.751542 CTAGATTTCTACACGGATGTAATTTCT 57.248 33.333 0.00 0.00 40.84 2.52
2001 2603 9.751542 AGTTAAATTGTCGATCTAGAACTATGG 57.248 33.333 0.00 0.00 0.00 2.74
2002 2604 8.979574 GTTAAATTGTCGATCTAGAACTATGGG 58.020 37.037 0.00 0.00 0.00 4.00
2003 2605 6.978674 AATTGTCGATCTAGAACTATGGGA 57.021 37.500 0.00 0.00 0.00 4.37
2004 2606 6.978674 ATTGTCGATCTAGAACTATGGGAA 57.021 37.500 0.00 0.00 0.00 3.97
2005 2607 6.978674 TTGTCGATCTAGAACTATGGGAAT 57.021 37.500 0.00 0.00 0.00 3.01
2006 2608 6.332735 TGTCGATCTAGAACTATGGGAATG 57.667 41.667 0.00 0.00 0.00 2.67
2007 2609 6.068670 TGTCGATCTAGAACTATGGGAATGA 58.931 40.000 0.00 0.00 0.00 2.57
2008 2610 6.016192 TGTCGATCTAGAACTATGGGAATGAC 60.016 42.308 0.00 0.00 0.00 3.06
2009 2611 6.207810 GTCGATCTAGAACTATGGGAATGACT 59.792 42.308 0.00 0.00 0.00 3.41
2010 2612 6.778069 TCGATCTAGAACTATGGGAATGACTT 59.222 38.462 0.00 0.00 0.00 3.01
2011 2613 7.942894 TCGATCTAGAACTATGGGAATGACTTA 59.057 37.037 0.00 0.00 0.00 2.24
2012 2614 8.744652 CGATCTAGAACTATGGGAATGACTTAT 58.255 37.037 0.00 0.00 0.00 1.73
2015 2617 9.877222 TCTAGAACTATGGGAATGACTTATACA 57.123 33.333 0.00 0.00 0.00 2.29
2016 2618 9.915629 CTAGAACTATGGGAATGACTTATACAC 57.084 37.037 0.00 0.00 0.00 2.90
2017 2619 7.736893 AGAACTATGGGAATGACTTATACACC 58.263 38.462 0.00 0.00 0.00 4.16
2018 2620 6.097915 ACTATGGGAATGACTTATACACCG 57.902 41.667 0.00 0.00 0.00 4.94
2019 2621 5.836898 ACTATGGGAATGACTTATACACCGA 59.163 40.000 0.00 0.00 0.00 4.69
2020 2622 4.665833 TGGGAATGACTTATACACCGAG 57.334 45.455 0.00 0.00 0.00 4.63
2021 2623 4.283337 TGGGAATGACTTATACACCGAGA 58.717 43.478 0.00 0.00 0.00 4.04
2022 2624 4.098960 TGGGAATGACTTATACACCGAGAC 59.901 45.833 0.00 0.00 0.00 3.36
2023 2625 4.288531 GGAATGACTTATACACCGAGACG 58.711 47.826 0.00 0.00 0.00 4.18
2077 2685 4.584743 CCCTATGAAATTTACCTTCAGGCC 59.415 45.833 0.00 0.00 36.30 5.19
2080 2688 3.430453 TGAAATTTACCTTCAGGCCCAG 58.570 45.455 0.00 0.00 39.32 4.45
2142 2750 5.964758 TGAAGCAAACTGTCAACAAAAGAT 58.035 33.333 0.00 0.00 0.00 2.40
2147 2755 5.978919 GCAAACTGTCAACAAAAGATCATCA 59.021 36.000 0.00 0.00 0.00 3.07
2156 2764 7.869429 GTCAACAAAAGATCATCAAATTGAGGT 59.131 33.333 7.53 0.00 29.15 3.85
2178 2786 6.619852 AGGTCATCTTACACCCATAATTAGGT 59.380 38.462 0.00 0.00 36.58 3.08
2186 2794 9.354673 CTTACACCCATAATTAGGTTTCATGAT 57.645 33.333 0.00 0.00 32.72 2.45
2191 2799 8.917088 ACCCATAATTAGGTTTCATGATGAAAG 58.083 33.333 19.96 7.22 45.83 2.62
2195 2803 9.699410 ATAATTAGGTTTCATGATGAAAGACCA 57.301 29.630 23.68 10.27 45.83 4.02
2198 2806 3.193479 GGTTTCATGATGAAAGACCACCC 59.807 47.826 19.96 12.82 45.83 4.61
2200 2808 1.065491 TCATGATGAAAGACCACCCCG 60.065 52.381 0.00 0.00 0.00 5.73
2202 2810 1.002624 GATGAAAGACCACCCCGCA 60.003 57.895 0.00 0.00 0.00 5.69
2228 2836 9.646427 ATTAAGAGTTAAGACTAAGAGCAACTG 57.354 33.333 0.00 0.00 35.88 3.16
2240 2848 2.093235 AGAGCAACTGTAGCAGATTCCC 60.093 50.000 2.91 0.00 35.18 3.97
2241 2849 1.912043 AGCAACTGTAGCAGATTCCCT 59.088 47.619 2.91 0.00 35.18 4.20
2242 2850 3.107601 AGCAACTGTAGCAGATTCCCTA 58.892 45.455 2.91 0.00 35.18 3.53
2244 2852 4.019321 AGCAACTGTAGCAGATTCCCTAAA 60.019 41.667 2.91 0.00 35.18 1.85
2247 2855 3.200165 ACTGTAGCAGATTCCCTAAACCC 59.800 47.826 2.91 0.00 35.18 4.11
2249 2857 3.589735 TGTAGCAGATTCCCTAAACCCAA 59.410 43.478 0.00 0.00 0.00 4.12
2250 2858 3.087370 AGCAGATTCCCTAAACCCAAC 57.913 47.619 0.00 0.00 0.00 3.77
2251 2859 2.649816 AGCAGATTCCCTAAACCCAACT 59.350 45.455 0.00 0.00 0.00 3.16
2257 2865 1.153565 TCCCTAAACCCAACTCCCTCT 59.846 52.381 0.00 0.00 0.00 3.69
2291 2899 8.785329 ATCAAAATAGAGAAAACTCACTCTCC 57.215 34.615 0.00 0.00 42.44 3.71
2292 2900 7.162082 TCAAAATAGAGAAAACTCACTCTCCC 58.838 38.462 0.00 0.00 42.44 4.30
2293 2901 6.943899 AAATAGAGAAAACTCACTCTCCCT 57.056 37.500 0.00 0.00 42.44 4.20
2294 2902 8.314751 CAAAATAGAGAAAACTCACTCTCCCTA 58.685 37.037 0.00 0.00 42.44 3.53
2295 2903 8.437274 AAATAGAGAAAACTCACTCTCCCTAA 57.563 34.615 0.00 0.00 42.44 2.69
2296 2904 5.993748 AGAGAAAACTCACTCTCCCTAAG 57.006 43.478 0.00 0.00 38.90 2.18
2297 2905 5.399113 AGAGAAAACTCACTCTCCCTAAGT 58.601 41.667 0.00 0.00 38.90 2.24
2298 2906 5.841783 AGAGAAAACTCACTCTCCCTAAGTT 59.158 40.000 0.00 0.00 38.90 2.66
2299 2907 5.859495 AGAAAACTCACTCTCCCTAAGTTG 58.141 41.667 0.00 0.00 30.95 3.16
2300 2908 3.686916 AACTCACTCTCCCTAAGTTGC 57.313 47.619 0.00 0.00 0.00 4.17
2301 2909 1.903183 ACTCACTCTCCCTAAGTTGCC 59.097 52.381 0.00 0.00 0.00 4.52
2302 2910 1.902508 CTCACTCTCCCTAAGTTGCCA 59.097 52.381 0.00 0.00 0.00 4.92
2303 2911 2.503356 CTCACTCTCCCTAAGTTGCCAT 59.497 50.000 0.00 0.00 0.00 4.40
2304 2912 2.501723 TCACTCTCCCTAAGTTGCCATC 59.498 50.000 0.00 0.00 0.00 3.51
2305 2913 2.503356 CACTCTCCCTAAGTTGCCATCT 59.497 50.000 0.00 0.00 0.00 2.90
2306 2914 3.706594 CACTCTCCCTAAGTTGCCATCTA 59.293 47.826 0.00 0.00 0.00 1.98
2307 2915 4.346418 CACTCTCCCTAAGTTGCCATCTAT 59.654 45.833 0.00 0.00 0.00 1.98
2308 2916 4.591072 ACTCTCCCTAAGTTGCCATCTATC 59.409 45.833 0.00 0.00 0.00 2.08
2309 2917 3.904339 TCTCCCTAAGTTGCCATCTATCC 59.096 47.826 0.00 0.00 0.00 2.59
2310 2918 2.979678 TCCCTAAGTTGCCATCTATCCC 59.020 50.000 0.00 0.00 0.00 3.85
2311 2919 2.289694 CCCTAAGTTGCCATCTATCCCG 60.290 54.545 0.00 0.00 0.00 5.14
2312 2920 2.632996 CCTAAGTTGCCATCTATCCCGA 59.367 50.000 0.00 0.00 0.00 5.14
2313 2921 3.071023 CCTAAGTTGCCATCTATCCCGAA 59.929 47.826 0.00 0.00 0.00 4.30
2314 2922 3.644966 AAGTTGCCATCTATCCCGAAA 57.355 42.857 0.00 0.00 0.00 3.46
2315 2923 3.199880 AGTTGCCATCTATCCCGAAAG 57.800 47.619 0.00 0.00 0.00 2.62
2316 2924 1.604278 GTTGCCATCTATCCCGAAAGC 59.396 52.381 0.00 0.00 0.00 3.51
2317 2925 1.131638 TGCCATCTATCCCGAAAGCT 58.868 50.000 0.00 0.00 0.00 3.74
2318 2926 1.490490 TGCCATCTATCCCGAAAGCTT 59.510 47.619 0.00 0.00 0.00 3.74
2319 2927 2.092429 TGCCATCTATCCCGAAAGCTTT 60.092 45.455 12.53 12.53 0.00 3.51
2320 2928 2.291741 GCCATCTATCCCGAAAGCTTTG 59.708 50.000 18.30 8.92 0.00 2.77
2321 2929 2.291741 CCATCTATCCCGAAAGCTTTGC 59.708 50.000 18.30 7.46 0.00 3.68
2322 2930 3.209410 CATCTATCCCGAAAGCTTTGCT 58.791 45.455 18.30 0.00 42.56 3.91
2323 2931 4.380531 CATCTATCCCGAAAGCTTTGCTA 58.619 43.478 18.30 0.00 38.25 3.49
2324 2932 4.481368 TCTATCCCGAAAGCTTTGCTAA 57.519 40.909 18.30 0.00 38.25 3.09
2325 2933 4.839121 TCTATCCCGAAAGCTTTGCTAAA 58.161 39.130 18.30 0.00 38.25 1.85
2326 2934 5.437060 TCTATCCCGAAAGCTTTGCTAAAT 58.563 37.500 18.30 6.21 38.25 1.40
2327 2935 3.848272 TCCCGAAAGCTTTGCTAAATG 57.152 42.857 18.30 0.00 38.25 2.32
2328 2936 2.094752 TCCCGAAAGCTTTGCTAAATGC 60.095 45.455 18.30 0.00 38.25 3.56
2329 2937 2.094545 CCCGAAAGCTTTGCTAAATGCT 60.095 45.455 18.30 0.00 45.84 3.79
2330 2938 3.128589 CCCGAAAGCTTTGCTAAATGCTA 59.871 43.478 18.30 0.00 43.82 3.49
2331 2939 4.380444 CCCGAAAGCTTTGCTAAATGCTAA 60.380 41.667 18.30 0.00 43.82 3.09
2332 2940 5.160641 CCGAAAGCTTTGCTAAATGCTAAA 58.839 37.500 18.30 0.00 43.82 1.85
2333 2941 5.287035 CCGAAAGCTTTGCTAAATGCTAAAG 59.713 40.000 18.30 0.00 43.82 1.85
2334 2942 6.086222 CGAAAGCTTTGCTAAATGCTAAAGA 58.914 36.000 18.30 0.00 43.82 2.52
2335 2943 6.582295 CGAAAGCTTTGCTAAATGCTAAAGAA 59.418 34.615 18.30 0.00 43.82 2.52
2336 2944 7.409767 CGAAAGCTTTGCTAAATGCTAAAGAAC 60.410 37.037 18.30 0.00 43.82 3.01
2337 2945 6.581171 AGCTTTGCTAAATGCTAAAGAACT 57.419 33.333 12.82 0.00 43.05 3.01
2338 2946 6.385033 AGCTTTGCTAAATGCTAAAGAACTG 58.615 36.000 12.82 0.00 43.05 3.16
2339 2947 6.207417 AGCTTTGCTAAATGCTAAAGAACTGA 59.793 34.615 12.82 0.00 43.05 3.41
2340 2948 6.306596 GCTTTGCTAAATGCTAAAGAACTGAC 59.693 38.462 12.82 0.00 43.37 3.51
2341 2949 6.875948 TTGCTAAATGCTAAAGAACTGACA 57.124 33.333 0.00 0.00 43.37 3.58
2342 2950 7.452880 TTGCTAAATGCTAAAGAACTGACAT 57.547 32.000 0.00 0.00 43.37 3.06
2343 2951 7.076842 TGCTAAATGCTAAAGAACTGACATC 57.923 36.000 0.00 0.00 43.37 3.06
2344 2952 6.654582 TGCTAAATGCTAAAGAACTGACATCA 59.345 34.615 0.00 0.00 43.37 3.07
2345 2953 7.148356 TGCTAAATGCTAAAGAACTGACATCAG 60.148 37.037 7.36 7.36 45.06 2.90
2346 2954 7.065085 GCTAAATGCTAAAGAACTGACATCAGA 59.935 37.037 15.76 0.00 41.55 3.27
2347 2955 7.934855 AAATGCTAAAGAACTGACATCAGAT 57.065 32.000 15.76 3.44 46.59 2.90
2348 2956 7.934855 AATGCTAAAGAACTGACATCAGATT 57.065 32.000 15.76 6.22 46.59 2.40
2349 2957 7.934855 ATGCTAAAGAACTGACATCAGATTT 57.065 32.000 15.76 13.77 46.59 2.17
2350 2958 7.750229 TGCTAAAGAACTGACATCAGATTTT 57.250 32.000 15.76 13.16 46.59 1.82
2351 2959 8.846943 TGCTAAAGAACTGACATCAGATTTTA 57.153 30.769 15.76 13.50 46.59 1.52
2352 2960 8.939929 TGCTAAAGAACTGACATCAGATTTTAG 58.060 33.333 22.60 22.60 46.59 1.85
2353 2961 8.394121 GCTAAAGAACTGACATCAGATTTTAGG 58.606 37.037 24.87 16.39 46.59 2.69
2354 2962 7.693969 AAAGAACTGACATCAGATTTTAGGG 57.306 36.000 15.76 0.00 46.59 3.53
2355 2963 6.627087 AGAACTGACATCAGATTTTAGGGA 57.373 37.500 15.76 0.00 46.59 4.20
2356 2964 6.648192 AGAACTGACATCAGATTTTAGGGAG 58.352 40.000 15.76 0.00 46.59 4.30
2357 2965 6.214412 AGAACTGACATCAGATTTTAGGGAGT 59.786 38.462 15.76 0.00 46.59 3.85
2358 2966 6.380079 ACTGACATCAGATTTTAGGGAGTT 57.620 37.500 15.76 0.00 46.59 3.01
2359 2967 6.410540 ACTGACATCAGATTTTAGGGAGTTC 58.589 40.000 15.76 0.00 46.59 3.01
2360 2968 5.745227 TGACATCAGATTTTAGGGAGTTCC 58.255 41.667 0.00 0.00 0.00 3.62
2361 2969 5.250543 TGACATCAGATTTTAGGGAGTTCCA 59.749 40.000 0.00 0.00 38.24 3.53
2362 2970 6.139679 ACATCAGATTTTAGGGAGTTCCAA 57.860 37.500 0.00 0.00 38.24 3.53
2363 2971 6.183347 ACATCAGATTTTAGGGAGTTCCAAG 58.817 40.000 0.00 0.00 38.24 3.61
2364 2972 4.589908 TCAGATTTTAGGGAGTTCCAAGC 58.410 43.478 0.00 0.00 38.24 4.01
2365 2973 3.696548 CAGATTTTAGGGAGTTCCAAGCC 59.303 47.826 0.00 0.00 38.24 4.35
2366 2974 3.333680 AGATTTTAGGGAGTTCCAAGCCA 59.666 43.478 0.00 0.00 38.24 4.75
2367 2975 3.603965 TTTTAGGGAGTTCCAAGCCAA 57.396 42.857 0.00 0.00 38.24 4.52
2368 2976 3.825908 TTTAGGGAGTTCCAAGCCAAT 57.174 42.857 0.00 0.00 38.24 3.16
2369 2977 2.806945 TAGGGAGTTCCAAGCCAATG 57.193 50.000 0.00 0.00 38.24 2.82
2370 2978 0.613012 AGGGAGTTCCAAGCCAATGC 60.613 55.000 0.00 0.00 38.24 3.56
2371 2979 1.607801 GGGAGTTCCAAGCCAATGCC 61.608 60.000 0.00 0.00 36.36 4.40
2372 2980 1.607801 GGAGTTCCAAGCCAATGCCC 61.608 60.000 0.00 0.00 35.19 5.36
2373 2981 0.613012 GAGTTCCAAGCCAATGCCCT 60.613 55.000 0.00 0.00 38.69 5.19
2374 2982 0.613012 AGTTCCAAGCCAATGCCCTC 60.613 55.000 0.00 0.00 38.69 4.30
2375 2983 1.678635 TTCCAAGCCAATGCCCTCG 60.679 57.895 0.00 0.00 38.69 4.63
2376 2984 3.142838 CCAAGCCAATGCCCTCGG 61.143 66.667 0.00 0.00 38.69 4.63
2377 2985 3.142838 CAAGCCAATGCCCTCGGG 61.143 66.667 0.00 0.00 38.69 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 9.268268 CGATATCCAACTTGGCTAGTAAATAAA 57.732 33.333 1.15 0.00 37.47 1.40
52 53 3.034635 AGAGACGATATCCAACTTGGCT 58.965 45.455 2.52 0.00 37.47 4.75
62 63 3.491267 CCGGCAAAGAAAGAGACGATATC 59.509 47.826 0.00 0.00 0.00 1.63
76 77 0.597377 GTGCAACTTTCCCGGCAAAG 60.597 55.000 16.55 16.55 38.10 2.77
82 83 2.507339 AATGTTGTGCAACTTTCCCG 57.493 45.000 14.97 0.00 41.67 5.14
117 118 5.946972 TGCGGAGTAAATAAAAATGGAGGAA 59.053 36.000 0.00 0.00 0.00 3.36
139 140 9.556030 GTTTGACTTTAGACAAACCTAATATGC 57.444 33.333 19.88 0.82 46.80 3.14
207 208 4.604156 TGGTATTGATTTGGTGGTGCATA 58.396 39.130 0.00 0.00 0.00 3.14
208 209 3.439154 TGGTATTGATTTGGTGGTGCAT 58.561 40.909 0.00 0.00 0.00 3.96
350 351 8.800332 ACTCTCTCCGTTTTTATTTACTCTGTA 58.200 33.333 0.00 0.00 0.00 2.74
351 352 7.668492 ACTCTCTCCGTTTTTATTTACTCTGT 58.332 34.615 0.00 0.00 0.00 3.41
368 369 7.336931 TGTTTGCCAAAAGATTATACTCTCTCC 59.663 37.037 0.00 0.00 0.00 3.71
369 370 8.268850 TGTTTGCCAAAAGATTATACTCTCTC 57.731 34.615 0.00 0.00 0.00 3.20
466 467 4.739195 AGCGAGAGTGATTGTAGAAGTTC 58.261 43.478 0.00 0.00 0.00 3.01
472 475 4.017380 ACGTTAGCGAGAGTGATTGTAG 57.983 45.455 5.81 0.00 42.00 2.74
481 484 4.520078 GAGAACATCTACGTTAGCGAGAG 58.480 47.826 5.81 2.65 42.00 3.20
540 543 1.427809 CTGGATGGAGTCCTGCCATA 58.572 55.000 19.64 3.31 45.81 2.74
578 581 1.627297 GCTCCGGTCAATCCCCTTCT 61.627 60.000 0.00 0.00 0.00 2.85
654 928 7.636579 TCTCCCCTAGCTACGTTATATAATGA 58.363 38.462 19.37 4.69 0.00 2.57
667 941 2.203509 GCGCCTCTCCCCTAGCTA 60.204 66.667 0.00 0.00 0.00 3.32
802 1076 3.072211 GCGTTACCTTGGACTTAAGCTT 58.928 45.455 3.48 3.48 0.00 3.74
879 1154 1.453379 GATGCACAGGAGCTGCCAT 60.453 57.895 0.00 0.00 40.02 4.40
880 1155 1.266867 TAGATGCACAGGAGCTGCCA 61.267 55.000 0.00 0.00 40.02 4.92
893 1168 5.124457 ACAACACACAGAAATGGATAGATGC 59.876 40.000 0.00 0.00 0.00 3.91
895 1170 6.475504 TCACAACACACAGAAATGGATAGAT 58.524 36.000 0.00 0.00 0.00 1.98
896 1171 5.863965 TCACAACACACAGAAATGGATAGA 58.136 37.500 0.00 0.00 0.00 1.98
981 1263 2.571216 CCTCGACCACCACCGTTCT 61.571 63.158 0.00 0.00 0.00 3.01
984 1266 2.283676 ATCCTCGACCACCACCGT 60.284 61.111 0.00 0.00 0.00 4.83
988 1270 1.607801 CTGCTCATCCTCGACCACCA 61.608 60.000 0.00 0.00 0.00 4.17
1158 1449 2.404995 GGTGGACGACGACGAGGAT 61.405 63.158 15.32 0.00 42.66 3.24
1389 1680 3.322254 AGGAACGAACTGACAACTGAGAT 59.678 43.478 0.00 0.00 0.00 2.75
1390 1681 2.693591 AGGAACGAACTGACAACTGAGA 59.306 45.455 0.00 0.00 0.00 3.27
1391 1682 3.099267 AGGAACGAACTGACAACTGAG 57.901 47.619 0.00 0.00 0.00 3.35
1392 1683 3.118920 TGAAGGAACGAACTGACAACTGA 60.119 43.478 0.00 0.00 0.00 3.41
1394 1685 3.536956 TGAAGGAACGAACTGACAACT 57.463 42.857 0.00 0.00 0.00 3.16
1395 1686 3.621715 ACTTGAAGGAACGAACTGACAAC 59.378 43.478 0.00 0.00 0.00 3.32
1396 1687 3.869065 ACTTGAAGGAACGAACTGACAA 58.131 40.909 0.00 0.00 0.00 3.18
1397 1688 3.454375 GACTTGAAGGAACGAACTGACA 58.546 45.455 0.00 0.00 0.00 3.58
1398 1689 2.471743 CGACTTGAAGGAACGAACTGAC 59.528 50.000 0.00 0.00 0.00 3.51
1475 1766 4.149046 GCGAGCCAACGATTCTCTATTTAG 59.851 45.833 0.00 0.00 35.09 1.85
1480 1775 0.815095 TGCGAGCCAACGATTCTCTA 59.185 50.000 0.00 0.00 35.09 2.43
1546 1841 1.374125 CCATCGACCGACAGTGCAA 60.374 57.895 0.00 0.00 0.00 4.08
1684 2246 4.946157 ACAGGAGCATTACTTCCATTCAAG 59.054 41.667 0.00 0.00 0.00 3.02
1776 2378 6.270815 GCAACTCAATGCACAATATTCATCT 58.729 36.000 0.00 0.00 45.70 2.90
1777 2379 5.172591 CGCAACTCAATGCACAATATTCATC 59.827 40.000 0.00 0.00 46.76 2.92
1778 2380 5.038683 CGCAACTCAATGCACAATATTCAT 58.961 37.500 0.00 0.00 46.76 2.57
1783 2385 2.095314 CACCGCAACTCAATGCACAATA 60.095 45.455 0.00 0.00 46.76 1.90
1806 2408 6.643770 CCAATTCATTCAAAGAAACCAGTGAG 59.356 38.462 0.00 0.00 0.00 3.51
1899 2501 9.570468 TCCGTGTAGAAATCTAGTGATATACTT 57.430 33.333 0.00 0.00 40.89 2.24
1900 2502 9.742144 ATCCGTGTAGAAATCTAGTGATATACT 57.258 33.333 0.00 0.00 43.56 2.12
1901 2503 9.776158 CATCCGTGTAGAAATCTAGTGATATAC 57.224 37.037 0.00 0.00 31.70 1.47
1902 2504 9.516546 ACATCCGTGTAGAAATCTAGTGATATA 57.483 33.333 0.00 0.00 36.63 0.86
1903 2505 8.410673 ACATCCGTGTAGAAATCTAGTGATAT 57.589 34.615 0.00 0.00 36.63 1.63
1904 2506 7.818997 ACATCCGTGTAGAAATCTAGTGATA 57.181 36.000 0.00 0.00 36.63 2.15
1905 2507 6.716934 ACATCCGTGTAGAAATCTAGTGAT 57.283 37.500 0.00 0.00 36.63 3.06
1906 2508 7.634671 TTACATCCGTGTAGAAATCTAGTGA 57.365 36.000 0.00 0.00 41.56 3.41
1907 2509 8.873215 AATTACATCCGTGTAGAAATCTAGTG 57.127 34.615 0.00 0.00 41.56 2.74
1908 2510 9.530633 GAAATTACATCCGTGTAGAAATCTAGT 57.469 33.333 0.00 0.00 41.56 2.57
1909 2511 9.751542 AGAAATTACATCCGTGTAGAAATCTAG 57.248 33.333 0.00 0.00 41.56 2.43
1975 2577 9.751542 CCATAGTTCTAGATCGACAATTTAACT 57.248 33.333 0.00 0.00 0.00 2.24
1976 2578 8.979574 CCCATAGTTCTAGATCGACAATTTAAC 58.020 37.037 0.00 0.00 0.00 2.01
1977 2579 8.920174 TCCCATAGTTCTAGATCGACAATTTAA 58.080 33.333 0.00 0.00 0.00 1.52
1978 2580 8.473358 TCCCATAGTTCTAGATCGACAATTTA 57.527 34.615 0.00 0.00 0.00 1.40
1979 2581 7.361457 TCCCATAGTTCTAGATCGACAATTT 57.639 36.000 0.00 0.00 0.00 1.82
1980 2582 6.978674 TCCCATAGTTCTAGATCGACAATT 57.021 37.500 0.00 0.00 0.00 2.32
1981 2583 6.978674 TTCCCATAGTTCTAGATCGACAAT 57.021 37.500 0.00 0.00 0.00 2.71
1982 2584 6.549736 TCATTCCCATAGTTCTAGATCGACAA 59.450 38.462 0.00 0.00 0.00 3.18
1983 2585 6.016192 GTCATTCCCATAGTTCTAGATCGACA 60.016 42.308 0.00 0.00 0.00 4.35
1984 2586 6.207810 AGTCATTCCCATAGTTCTAGATCGAC 59.792 42.308 0.00 0.00 0.00 4.20
1985 2587 6.307776 AGTCATTCCCATAGTTCTAGATCGA 58.692 40.000 0.00 0.00 0.00 3.59
1986 2588 6.582677 AGTCATTCCCATAGTTCTAGATCG 57.417 41.667 0.00 0.00 0.00 3.69
1989 2591 9.877222 TGTATAAGTCATTCCCATAGTTCTAGA 57.123 33.333 0.00 0.00 0.00 2.43
1990 2592 9.915629 GTGTATAAGTCATTCCCATAGTTCTAG 57.084 37.037 0.00 0.00 0.00 2.43
1991 2593 8.867097 GGTGTATAAGTCATTCCCATAGTTCTA 58.133 37.037 0.00 0.00 0.00 2.10
1992 2594 7.471539 CGGTGTATAAGTCATTCCCATAGTTCT 60.472 40.741 0.00 0.00 0.00 3.01
1993 2595 6.645415 CGGTGTATAAGTCATTCCCATAGTTC 59.355 42.308 0.00 0.00 0.00 3.01
1994 2596 6.325545 TCGGTGTATAAGTCATTCCCATAGTT 59.674 38.462 0.00 0.00 0.00 2.24
1995 2597 5.836898 TCGGTGTATAAGTCATTCCCATAGT 59.163 40.000 0.00 0.00 0.00 2.12
1996 2598 6.208797 TCTCGGTGTATAAGTCATTCCCATAG 59.791 42.308 0.00 0.00 0.00 2.23
1997 2599 6.015688 GTCTCGGTGTATAAGTCATTCCCATA 60.016 42.308 0.00 0.00 0.00 2.74
1998 2600 4.899457 TCTCGGTGTATAAGTCATTCCCAT 59.101 41.667 0.00 0.00 0.00 4.00
1999 2601 4.098960 GTCTCGGTGTATAAGTCATTCCCA 59.901 45.833 0.00 0.00 0.00 4.37
2000 2602 4.618965 GTCTCGGTGTATAAGTCATTCCC 58.381 47.826 0.00 0.00 0.00 3.97
2001 2603 4.288531 CGTCTCGGTGTATAAGTCATTCC 58.711 47.826 0.00 0.00 0.00 3.01
2002 2604 4.288531 CCGTCTCGGTGTATAAGTCATTC 58.711 47.826 0.00 0.00 42.73 2.67
2003 2605 4.303086 CCGTCTCGGTGTATAAGTCATT 57.697 45.455 0.00 0.00 42.73 2.57
2004 2606 3.984508 CCGTCTCGGTGTATAAGTCAT 57.015 47.619 0.00 0.00 42.73 3.06
2059 2667 3.075283 TCTGGGCCTGAAGGTAAATTTCA 59.925 43.478 11.07 0.00 37.57 2.69
2060 2668 3.697166 TCTGGGCCTGAAGGTAAATTTC 58.303 45.455 11.07 0.00 37.57 2.17
2071 2679 0.776810 TCCAATGTTTCTGGGCCTGA 59.223 50.000 9.30 9.30 34.46 3.86
2135 2743 8.467598 AGATGACCTCAATTTGATGATCTTTTG 58.532 33.333 8.44 0.00 0.00 2.44
2142 2750 6.599244 GGTGTAAGATGACCTCAATTTGATGA 59.401 38.462 8.44 0.00 0.00 2.92
2147 2755 5.255397 TGGGTGTAAGATGACCTCAATTT 57.745 39.130 0.00 0.00 32.33 1.82
2156 2764 8.553153 TGAAACCTAATTATGGGTGTAAGATGA 58.447 33.333 0.00 0.00 39.95 2.92
2178 2786 3.430453 GGGGTGGTCTTTCATCATGAAA 58.570 45.455 12.35 12.35 43.37 2.69
2186 2794 0.693622 TAATGCGGGGTGGTCTTTCA 59.306 50.000 0.00 0.00 0.00 2.69
2191 2799 0.252197 ACTCTTAATGCGGGGTGGTC 59.748 55.000 0.00 0.00 0.00 4.02
2195 2803 3.518303 AGTCTTAACTCTTAATGCGGGGT 59.482 43.478 0.00 0.00 0.00 4.95
2198 2806 6.199342 GCTCTTAGTCTTAACTCTTAATGCGG 59.801 42.308 0.00 0.00 36.92 5.69
2200 2808 8.384365 GTTGCTCTTAGTCTTAACTCTTAATGC 58.616 37.037 0.00 0.00 36.92 3.56
2202 2810 9.646427 CAGTTGCTCTTAGTCTTAACTCTTAAT 57.354 33.333 0.00 0.00 36.92 1.40
2228 2836 3.926058 TGGGTTTAGGGAATCTGCTAC 57.074 47.619 0.00 0.00 0.00 3.58
2240 2848 5.757099 TTCTTAGAGGGAGTTGGGTTTAG 57.243 43.478 0.00 0.00 0.00 1.85
2241 2849 6.713731 ATTTCTTAGAGGGAGTTGGGTTTA 57.286 37.500 0.00 0.00 0.00 2.01
2242 2850 5.600669 ATTTCTTAGAGGGAGTTGGGTTT 57.399 39.130 0.00 0.00 0.00 3.27
2244 2852 6.447084 TGATAATTTCTTAGAGGGAGTTGGGT 59.553 38.462 0.00 0.00 0.00 4.51
2290 2898 2.289694 CGGGATAGATGGCAACTTAGGG 60.290 54.545 1.54 0.00 37.61 3.53
2291 2899 2.632996 TCGGGATAGATGGCAACTTAGG 59.367 50.000 1.54 0.00 37.61 2.69
2292 2900 4.336889 TTCGGGATAGATGGCAACTTAG 57.663 45.455 1.54 0.00 37.61 2.18
2293 2901 4.703897 CTTTCGGGATAGATGGCAACTTA 58.296 43.478 1.54 0.00 37.61 2.24
2294 2902 3.545703 CTTTCGGGATAGATGGCAACTT 58.454 45.455 1.54 0.00 37.61 2.66
2295 2903 2.746472 GCTTTCGGGATAGATGGCAACT 60.746 50.000 1.95 1.95 37.61 3.16
2296 2904 1.604278 GCTTTCGGGATAGATGGCAAC 59.396 52.381 0.00 0.00 0.00 4.17
2297 2905 1.490490 AGCTTTCGGGATAGATGGCAA 59.510 47.619 0.00 0.00 0.00 4.52
2298 2906 1.131638 AGCTTTCGGGATAGATGGCA 58.868 50.000 0.00 0.00 0.00 4.92
2299 2907 2.262423 AAGCTTTCGGGATAGATGGC 57.738 50.000 0.00 0.00 0.00 4.40
2300 2908 2.291741 GCAAAGCTTTCGGGATAGATGG 59.708 50.000 9.23 0.00 0.00 3.51
2301 2909 3.209410 AGCAAAGCTTTCGGGATAGATG 58.791 45.455 9.23 0.00 33.89 2.90
2302 2910 3.567478 AGCAAAGCTTTCGGGATAGAT 57.433 42.857 9.23 0.00 33.89 1.98
2303 2911 4.481368 TTAGCAAAGCTTTCGGGATAGA 57.519 40.909 9.23 0.00 40.44 1.98
2304 2912 5.514279 CATTTAGCAAAGCTTTCGGGATAG 58.486 41.667 9.23 0.00 40.44 2.08
2305 2913 4.202010 GCATTTAGCAAAGCTTTCGGGATA 60.202 41.667 9.23 0.00 44.79 2.59
2306 2914 3.429410 GCATTTAGCAAAGCTTTCGGGAT 60.429 43.478 9.23 0.00 44.79 3.85
2307 2915 2.094752 GCATTTAGCAAAGCTTTCGGGA 60.095 45.455 9.23 0.00 44.79 5.14
2308 2916 2.262211 GCATTTAGCAAAGCTTTCGGG 58.738 47.619 9.23 0.00 44.79 5.14
2319 2927 7.148356 CTGATGTCAGTTCTTTAGCATTTAGCA 60.148 37.037 1.84 0.00 41.61 3.49
2320 2928 7.065085 TCTGATGTCAGTTCTTTAGCATTTAGC 59.935 37.037 9.65 0.00 44.12 3.09
2321 2929 8.484641 TCTGATGTCAGTTCTTTAGCATTTAG 57.515 34.615 9.65 0.00 44.12 1.85
2322 2930 9.453572 AATCTGATGTCAGTTCTTTAGCATTTA 57.546 29.630 9.65 0.00 44.12 1.40
2323 2931 7.934855 ATCTGATGTCAGTTCTTTAGCATTT 57.065 32.000 9.65 0.00 44.12 2.32
2324 2932 7.934855 AATCTGATGTCAGTTCTTTAGCATT 57.065 32.000 9.65 0.00 44.12 3.56
2325 2933 7.934855 AAATCTGATGTCAGTTCTTTAGCAT 57.065 32.000 9.65 0.00 44.12 3.79
2326 2934 7.750229 AAAATCTGATGTCAGTTCTTTAGCA 57.250 32.000 9.65 0.00 44.12 3.49
2327 2935 8.394121 CCTAAAATCTGATGTCAGTTCTTTAGC 58.606 37.037 20.58 0.00 44.12 3.09
2328 2936 8.887717 CCCTAAAATCTGATGTCAGTTCTTTAG 58.112 37.037 19.88 19.88 44.12 1.85
2329 2937 8.602424 TCCCTAAAATCTGATGTCAGTTCTTTA 58.398 33.333 9.65 10.18 44.12 1.85
2330 2938 7.461749 TCCCTAAAATCTGATGTCAGTTCTTT 58.538 34.615 9.65 9.70 44.12 2.52
2331 2939 7.020827 TCCCTAAAATCTGATGTCAGTTCTT 57.979 36.000 9.65 4.76 44.12 2.52
2332 2940 6.214412 ACTCCCTAAAATCTGATGTCAGTTCT 59.786 38.462 9.65 0.00 44.12 3.01
2333 2941 6.410540 ACTCCCTAAAATCTGATGTCAGTTC 58.589 40.000 9.65 0.00 44.12 3.01
2334 2942 6.380079 ACTCCCTAAAATCTGATGTCAGTT 57.620 37.500 9.65 0.00 44.12 3.16
2335 2943 6.380079 AACTCCCTAAAATCTGATGTCAGT 57.620 37.500 9.65 0.00 44.12 3.41
2336 2944 5.819901 GGAACTCCCTAAAATCTGATGTCAG 59.180 44.000 3.61 3.61 45.08 3.51
2337 2945 5.250543 TGGAACTCCCTAAAATCTGATGTCA 59.749 40.000 0.00 0.00 35.38 3.58
2338 2946 5.745227 TGGAACTCCCTAAAATCTGATGTC 58.255 41.667 0.00 0.00 35.38 3.06
2339 2947 5.779241 TGGAACTCCCTAAAATCTGATGT 57.221 39.130 0.00 0.00 35.38 3.06
2340 2948 5.067023 GCTTGGAACTCCCTAAAATCTGATG 59.933 44.000 0.00 0.00 35.38 3.07
2341 2949 5.196695 GCTTGGAACTCCCTAAAATCTGAT 58.803 41.667 0.00 0.00 35.38 2.90
2342 2950 4.567747 GGCTTGGAACTCCCTAAAATCTGA 60.568 45.833 0.00 0.00 35.38 3.27
2343 2951 3.696548 GGCTTGGAACTCCCTAAAATCTG 59.303 47.826 0.00 0.00 35.38 2.90
2344 2952 3.333680 TGGCTTGGAACTCCCTAAAATCT 59.666 43.478 0.00 0.00 35.38 2.40
2345 2953 3.697166 TGGCTTGGAACTCCCTAAAATC 58.303 45.455 0.00 0.00 35.38 2.17
2346 2954 3.825908 TGGCTTGGAACTCCCTAAAAT 57.174 42.857 0.00 0.00 35.38 1.82
2347 2955 3.603965 TTGGCTTGGAACTCCCTAAAA 57.396 42.857 0.00 0.00 35.38 1.52
2348 2956 3.430453 CATTGGCTTGGAACTCCCTAAA 58.570 45.455 0.00 0.00 35.38 1.85
2349 2957 2.883888 GCATTGGCTTGGAACTCCCTAA 60.884 50.000 0.00 0.00 36.96 2.69
2350 2958 1.340991 GCATTGGCTTGGAACTCCCTA 60.341 52.381 0.00 0.00 36.96 3.53
2351 2959 0.613012 GCATTGGCTTGGAACTCCCT 60.613 55.000 0.00 0.00 36.96 4.20
2352 2960 1.607801 GGCATTGGCTTGGAACTCCC 61.608 60.000 2.42 0.00 40.87 4.30
2353 2961 1.607801 GGGCATTGGCTTGGAACTCC 61.608 60.000 10.31 0.00 40.87 3.85
2354 2962 0.613012 AGGGCATTGGCTTGGAACTC 60.613 55.000 10.31 0.00 40.87 3.01
2355 2963 0.613012 GAGGGCATTGGCTTGGAACT 60.613 55.000 10.31 0.00 40.87 3.01
2356 2964 1.893062 GAGGGCATTGGCTTGGAAC 59.107 57.895 10.31 0.00 40.87 3.62
2357 2965 1.678635 CGAGGGCATTGGCTTGGAA 60.679 57.895 10.31 0.00 40.87 3.53
2358 2966 2.045045 CGAGGGCATTGGCTTGGA 60.045 61.111 10.31 0.00 40.87 3.53
2359 2967 3.142838 CCGAGGGCATTGGCTTGG 61.143 66.667 10.31 3.75 40.87 3.61
2360 2968 3.142838 CCCGAGGGCATTGGCTTG 61.143 66.667 10.31 0.56 40.87 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.