Multiple sequence alignment - TraesCS3D01G367700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G367700 chr3D 100.000 3404 0 0 1 3404 481533230 481529827 0.000000e+00 6287
1 TraesCS3D01G367700 chr3D 100.000 2799 0 0 3691 6489 481529540 481526742 0.000000e+00 5169
2 TraesCS3D01G367700 chr3B 90.360 1722 102 29 4824 6489 642820624 642818911 0.000000e+00 2202
3 TraesCS3D01G367700 chr3B 92.282 1490 76 19 1898 3377 642823763 642822303 0.000000e+00 2078
4 TraesCS3D01G367700 chr3B 88.677 1678 124 27 48 1685 642825839 642824188 0.000000e+00 1986
5 TraesCS3D01G367700 chr3B 94.667 675 29 4 3691 4364 642822022 642821354 0.000000e+00 1040
6 TraesCS3D01G367700 chr3B 91.691 349 13 6 4344 4692 642821164 642820832 2.740000e-128 470
7 TraesCS3D01G367700 chr3B 88.276 145 14 1 1732 1873 642824064 642823920 3.110000e-38 171
8 TraesCS3D01G367700 chr3A 88.792 1713 110 40 4824 6489 624534556 624532879 0.000000e+00 2025
9 TraesCS3D01G367700 chr3A 94.216 1314 52 10 2091 3402 624537390 624536099 0.000000e+00 1984
10 TraesCS3D01G367700 chr3A 87.225 1683 166 28 71 1729 624539624 624537967 0.000000e+00 1871
11 TraesCS3D01G367700 chr3A 96.741 982 32 0 3713 4694 624535741 624534760 0.000000e+00 1637
12 TraesCS3D01G367700 chr3A 89.518 477 19 7 1732 2187 624537853 624537387 5.640000e-160 575


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G367700 chr3D 481526742 481533230 6488 True 5728.0 6287 100.000000 1 6489 2 chr3D.!!$R1 6488
1 TraesCS3D01G367700 chr3B 642818911 642825839 6928 True 1324.5 2202 90.992167 48 6489 6 chr3B.!!$R1 6441
2 TraesCS3D01G367700 chr3A 624532879 624539624 6745 True 1618.4 2025 91.298400 71 6489 5 chr3A.!!$R1 6418

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
879 913 0.100682 CAGGTACATCGACGTCCCAG 59.899 60.000 10.58 1.96 0.00 4.45 F
962 1009 0.476771 TTTTCTTCCCAAGTCGCCCT 59.523 50.000 0.00 0.00 0.00 5.19 F
2454 2857 1.000607 GGCCATATGCTGATTGTGCTG 60.001 52.381 0.00 0.00 40.92 4.41 F
3126 3533 4.245660 ACTGGCATATATTTCGTCATCCG 58.754 43.478 0.00 0.00 38.13 4.18 F
4122 4578 4.262164 GCAAGACCAATTTCACCATTCTGT 60.262 41.667 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1846 2018 1.280421 GGTGATCAAAGGCAGGAGAGT 59.720 52.381 0.00 0.0 0.00 3.24 R
2698 3101 1.821216 ATTGGCACTAAAGTGGTCCG 58.179 50.000 11.86 0.0 45.72 4.79 R
3995 4451 1.487976 ACCATGCACCAGGTCATCTAG 59.512 52.381 1.67 0.0 30.79 2.43 R
4686 5349 0.169009 GTGAAAGAACTCCGCCATGC 59.831 55.000 0.00 0.0 0.00 4.06 R
5940 6717 0.108585 AGCCGGCGATATGGTTTGAT 59.891 50.000 23.20 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 8.641499 TTAAATTGTGGATTGACAACAAAGAC 57.359 30.769 0.00 0.00 38.64 3.01
77 78 4.141756 ACAACAAAGACCATGGCAATTTCA 60.142 37.500 13.04 0.00 0.00 2.69
165 166 8.419076 TTGATTGCAAAGAACCTTTTTCTAAC 57.581 30.769 1.71 0.00 0.00 2.34
254 255 3.746492 ACTTGTAACTTCCAACGAGATGC 59.254 43.478 0.00 0.00 32.40 3.91
288 289 2.744202 CCACTCACATGGCAAAGTACTC 59.256 50.000 0.00 0.00 31.52 2.59
310 311 3.684305 CCGTTGTAGCAATGAGTCATCAA 59.316 43.478 5.98 3.15 39.39 2.57
327 328 0.957395 CAATGCTGCCACGAGGACTT 60.957 55.000 1.86 0.00 36.89 3.01
374 375 3.637998 TTGAAACTACTTCGACGCTCT 57.362 42.857 0.00 0.00 36.78 4.09
377 378 0.526662 AACTACTTCGACGCTCTGGG 59.473 55.000 0.00 0.00 0.00 4.45
379 380 1.658686 CTACTTCGACGCTCTGGGCT 61.659 60.000 0.00 0.00 39.13 5.19
383 384 2.357517 CGACGCTCTGGGCTGTTT 60.358 61.111 0.00 0.00 39.13 2.83
403 429 2.505557 GCAATGAGCGCACCTTGC 60.506 61.111 25.72 25.72 40.69 4.01
436 462 3.476953 AGGTCCTAGGGTTAGAGAGAGT 58.523 50.000 9.46 0.00 0.00 3.24
459 485 6.205464 AGTTTCTCGATGATGAAGAAAAGCAA 59.795 34.615 0.00 0.00 31.51 3.91
463 489 3.425359 CGATGATGAAGAAAAGCAACGCT 60.425 43.478 0.00 0.00 42.56 5.07
469 495 1.160329 AGAAAAGCAACGCTCGCTGT 61.160 50.000 0.00 0.00 38.25 4.40
471 497 1.436195 AAAAGCAACGCTCGCTGTCA 61.436 50.000 0.00 0.00 38.25 3.58
472 498 1.230635 AAAGCAACGCTCGCTGTCAT 61.231 50.000 0.00 0.00 38.25 3.06
489 515 3.748048 TGTCATCGAGAAAGGAAAAGCAG 59.252 43.478 0.00 0.00 0.00 4.24
505 531 5.972107 AAAGCAGTCTCTATTGTGCAAAT 57.028 34.783 0.00 0.00 38.44 2.32
521 548 3.249799 TGCAAATGAACTAACACCTCACG 59.750 43.478 0.00 0.00 0.00 4.35
522 549 3.364964 GCAAATGAACTAACACCTCACGG 60.365 47.826 0.00 0.00 0.00 4.94
523 550 2.762535 ATGAACTAACACCTCACGGG 57.237 50.000 0.00 0.00 41.89 5.28
598 628 3.304659 GGCAAACAACACATCGTCAGAAT 60.305 43.478 0.00 0.00 0.00 2.40
604 634 5.734720 ACAACACATCGTCAGAATAGGAAT 58.265 37.500 0.00 0.00 0.00 3.01
607 637 7.492669 ACAACACATCGTCAGAATAGGAATAAG 59.507 37.037 0.00 0.00 0.00 1.73
608 638 7.113658 ACACATCGTCAGAATAGGAATAAGT 57.886 36.000 0.00 0.00 0.00 2.24
616 646 6.201234 GTCAGAATAGGAATAAGTTCGGAAGC 59.799 42.308 0.00 0.00 35.10 3.86
678 709 2.740452 GTCGAAACAGGAACGAAGTCT 58.260 47.619 0.00 0.00 45.00 3.24
696 727 6.586463 CGAAGTCTGAACTATTAGAAGCACAA 59.414 38.462 0.00 0.00 33.48 3.33
791 825 1.475169 GGAAAAAGCAAGCTGGGCCT 61.475 55.000 4.53 0.00 0.00 5.19
806 840 1.491505 GGCCTGTCTTAATCGCGAGC 61.492 60.000 16.66 8.91 0.00 5.03
863 897 1.755783 GATTTGCTCAGGGCCCAGG 60.756 63.158 27.56 16.57 40.92 4.45
865 899 1.214305 ATTTGCTCAGGGCCCAGGTA 61.214 55.000 27.56 10.08 40.92 3.08
869 903 1.832912 CTCAGGGCCCAGGTACATC 59.167 63.158 27.56 0.00 0.00 3.06
876 910 1.436336 CCCAGGTACATCGACGTCC 59.564 63.158 10.58 0.00 0.00 4.79
878 912 1.317431 CCAGGTACATCGACGTCCCA 61.317 60.000 10.58 0.00 0.00 4.37
879 913 0.100682 CAGGTACATCGACGTCCCAG 59.899 60.000 10.58 1.96 0.00 4.45
962 1009 0.476771 TTTTCTTCCCAAGTCGCCCT 59.523 50.000 0.00 0.00 0.00 5.19
1124 1171 2.707039 CGCTCGGCCGGTAATTTG 59.293 61.111 27.83 8.04 0.00 2.32
1307 1357 1.406069 GCGTCATCACCAAGGTCATCT 60.406 52.381 0.00 0.00 0.00 2.90
1329 1379 3.053455 GACTCGTTCTCTGTTCCAAGTG 58.947 50.000 0.00 0.00 0.00 3.16
1376 1426 8.934023 ATTTGGTCCAGATTCAGTAGTTTTTA 57.066 30.769 0.00 0.00 0.00 1.52
1377 1427 7.739498 TTGGTCCAGATTCAGTAGTTTTTAC 57.261 36.000 0.00 0.00 0.00 2.01
1389 1439 7.107542 TCAGTAGTTTTTACTGTGGTTCTGTT 58.892 34.615 12.52 0.00 43.84 3.16
1434 1485 1.133025 GTTCGGTGATGCCAATTCCTG 59.867 52.381 0.00 0.00 36.97 3.86
1542 1594 6.455113 CCGACATTGGAAATTAGTAACAGTCG 60.455 42.308 0.00 0.00 42.28 4.18
1612 1664 6.011893 AGTGGGTACTAGAAAGCCCTTAAAAT 60.012 38.462 13.17 0.00 41.59 1.82
1687 1745 6.095300 ACATTGAACAGTTCTGAATGTTGTCA 59.905 34.615 19.38 10.60 39.66 3.58
1692 1750 6.309712 ACAGTTCTGAATGTTGTCATGAAG 57.690 37.500 0.00 0.00 34.19 3.02
1717 1775 3.006752 GCAATAGAGAGCAGCTATGGAGT 59.993 47.826 0.00 0.00 0.00 3.85
1730 1788 4.285517 AGCTATGGAGTATCAGGACAATGG 59.714 45.833 0.00 0.00 36.25 3.16
1782 1951 4.345859 TCTTCAATAACCAAGTCACGGT 57.654 40.909 0.00 0.00 38.85 4.83
1846 2018 2.121948 CTCTGATGGAGGGATTGGTCA 58.878 52.381 0.00 0.00 38.35 4.02
1859 2031 1.140312 TTGGTCACTCTCCTGCCTTT 58.860 50.000 0.00 0.00 0.00 3.11
1916 2220 5.003804 AGCTGTAACCCTTCAACTATGTTG 58.996 41.667 4.25 4.25 0.00 3.33
1973 2282 3.382546 CCCTCCTGCATGGTTTGAATAAG 59.617 47.826 0.00 0.00 37.07 1.73
1980 2289 6.271488 TGCATGGTTTGAATAAGAAAGGAG 57.729 37.500 0.00 0.00 0.00 3.69
1983 2292 5.705609 TGGTTTGAATAAGAAAGGAGCAC 57.294 39.130 0.00 0.00 0.00 4.40
2206 2608 2.364324 TGGATCCTACTGGTTCGTATGC 59.636 50.000 14.23 0.00 33.85 3.14
2221 2623 6.257849 GGTTCGTATGCTAACAAAGATGATCA 59.742 38.462 0.00 0.00 0.00 2.92
2260 2662 3.357166 TTGTGTAAACCGCCAATTGAC 57.643 42.857 7.12 0.00 0.00 3.18
2303 2705 9.913310 TGTTCTATCATTAATTCACACCCATTA 57.087 29.630 0.00 0.00 0.00 1.90
2401 2803 8.307483 GCTATCTAGGAGCTGTATCACATTTAA 58.693 37.037 9.56 0.00 36.96 1.52
2447 2850 3.645434 TCCTTTTTGGCCATATGCTGAT 58.355 40.909 6.09 0.00 40.92 2.90
2454 2857 1.000607 GGCCATATGCTGATTGTGCTG 60.001 52.381 0.00 0.00 40.92 4.41
2537 2940 4.876107 GGAGCAGAGAAAATTGTTATCCGA 59.124 41.667 0.00 0.00 0.00 4.55
2698 3101 6.346096 TCCCTGCAGAGTAACATAAATGTAC 58.654 40.000 17.39 0.00 40.80 2.90
2699 3102 5.234329 CCCTGCAGAGTAACATAAATGTACG 59.766 44.000 17.39 0.00 40.80 3.67
2740 3143 9.347934 CAATATTGTGTTTTATTGCTTACCGAA 57.652 29.630 7.32 0.00 31.25 4.30
3010 3417 9.890629 ATTCTTCACAGCTATGTTACAGATAAA 57.109 29.630 0.00 0.00 37.65 1.40
3126 3533 4.245660 ACTGGCATATATTTCGTCATCCG 58.754 43.478 0.00 0.00 38.13 4.18
3147 3554 5.008911 TCCGGTGATTTGATCATTATTGCTG 59.991 40.000 0.00 0.00 42.04 4.41
3149 3556 6.017192 CCGGTGATTTGATCATTATTGCTGTA 60.017 38.462 0.00 0.00 42.04 2.74
3368 3776 9.747898 TTCATACAGATGTTTAAGGTATGGTTT 57.252 29.630 0.00 0.00 40.86 3.27
3387 3795 4.706962 GGTTTCTTCATTGCCCAGTAAGAT 59.293 41.667 0.00 0.00 0.00 2.40
3399 3807 5.132648 TGCCCAGTAAGATGTCCTTGATATT 59.867 40.000 0.00 0.00 36.34 1.28
3402 3810 7.162082 CCCAGTAAGATGTCCTTGATATTACC 58.838 42.308 0.00 0.00 36.34 2.85
3721 4176 8.395633 GCAGTTACTGGTTAATAGTTGGTAATG 58.604 37.037 14.63 0.00 31.21 1.90
3971 4427 9.813080 GCAGTAAAATGTTGTGTTTGTTAAAAA 57.187 25.926 0.00 0.00 0.00 1.94
4083 4539 4.756642 TCTCAACTTGCTCTTGGTTATGTG 59.243 41.667 0.00 0.00 0.00 3.21
4111 4567 4.961438 AACTGGATTGCAAGACCAATTT 57.039 36.364 22.46 17.02 35.67 1.82
4122 4578 4.262164 GCAAGACCAATTTCACCATTCTGT 60.262 41.667 0.00 0.00 0.00 3.41
4293 4749 7.624077 AGAGGTAATCAGTAACCTGTTAGGATT 59.376 37.037 15.47 15.47 46.22 3.01
4461 5124 6.058833 TGTGCAGTCAATAAAGGTGAGTTTA 58.941 36.000 0.00 0.00 0.00 2.01
4686 5349 4.876107 AGTTCCATATTTCGTGCTTAGTGG 59.124 41.667 0.00 0.00 0.00 4.00
4748 5440 1.937191 AACTGGGCCCTACCAATTTG 58.063 50.000 25.70 4.23 40.68 2.32
4762 5454 7.315890 CCTACCAATTTGAAAATTCCAGAGTC 58.684 38.462 0.00 0.00 36.52 3.36
4801 5493 1.347707 TCTCTTAGCACAACACAGGGG 59.652 52.381 0.00 0.00 0.00 4.79
4802 5494 1.072331 CTCTTAGCACAACACAGGGGT 59.928 52.381 0.00 0.00 0.00 4.95
4803 5495 2.301870 CTCTTAGCACAACACAGGGGTA 59.698 50.000 0.00 0.00 0.00 3.69
4805 5497 3.329520 TCTTAGCACAACACAGGGGTAAT 59.670 43.478 0.00 0.00 0.00 1.89
4806 5498 2.200373 AGCACAACACAGGGGTAATC 57.800 50.000 0.00 0.00 0.00 1.75
4807 5499 1.173913 GCACAACACAGGGGTAATCC 58.826 55.000 0.00 0.00 0.00 3.01
4809 5501 2.817839 GCACAACACAGGGGTAATCCTT 60.818 50.000 0.00 0.00 34.31 3.36
4810 5502 2.819608 CACAACACAGGGGTAATCCTTG 59.180 50.000 0.00 0.00 46.90 3.61
4815 5507 2.024176 CAGGGGTAATCCTTGTGTCG 57.976 55.000 0.00 0.00 37.79 4.35
4816 5508 1.553248 CAGGGGTAATCCTTGTGTCGA 59.447 52.381 0.00 0.00 37.79 4.20
4818 5510 2.434702 AGGGGTAATCCTTGTGTCGATC 59.565 50.000 0.00 0.00 32.13 3.69
4821 5513 3.132289 GGGTAATCCTTGTGTCGATCTCA 59.868 47.826 0.00 0.00 0.00 3.27
4822 5514 4.202264 GGGTAATCCTTGTGTCGATCTCAT 60.202 45.833 0.00 0.00 0.00 2.90
4830 5571 6.878923 TCCTTGTGTCGATCTCATGTTTATTT 59.121 34.615 0.00 0.00 0.00 1.40
4833 5574 6.314018 TGTGTCGATCTCATGTTTATTTTGC 58.686 36.000 0.00 0.00 0.00 3.68
4859 5600 8.338259 CACTATTACCTGGAAATTTTCTCATCG 58.662 37.037 0.00 2.67 0.00 3.84
4880 5621 6.706055 TCGTATTCTTACTGCAGTGAAAAG 57.294 37.500 29.57 23.06 0.00 2.27
4985 5728 2.523015 GCGAGCAGAAATTGTGAATGG 58.477 47.619 0.00 0.00 0.00 3.16
5021 5764 5.103687 ACCGGTGTTTTGTTGTGAATAAAC 58.896 37.500 6.12 0.00 0.00 2.01
5151 5894 2.256174 CTTGCATTCCATGAGTTTGCG 58.744 47.619 0.00 0.00 36.11 4.85
5178 5921 5.470437 AGGTCAAGCAAAGTTAGCTAAAGAC 59.530 40.000 7.99 0.00 42.53 3.01
5181 5924 7.018235 GTCAAGCAAAGTTAGCTAAAGACATC 58.982 38.462 7.99 0.00 42.53 3.06
5350 6094 7.332430 TCATGTATACTTAAAAGTGACGGTTGG 59.668 37.037 4.17 0.00 40.07 3.77
5377 6121 6.682423 TGCTCCAGTTGTTATATTGACATG 57.318 37.500 0.00 0.00 0.00 3.21
5499 6243 3.838244 AGACAGTGGAGTTGTTTAGCA 57.162 42.857 0.00 0.00 0.00 3.49
5577 6327 8.950007 AGACCTTGAAAAATAGGGATTACAAA 57.050 30.769 0.00 0.00 35.79 2.83
5597 6347 6.681777 ACAAATTGTATCAACAGAGAAAGGC 58.318 36.000 0.00 0.00 36.83 4.35
5602 6352 4.631377 TGTATCAACAGAGAAAGGCAATCG 59.369 41.667 0.00 0.00 0.00 3.34
5626 6376 4.820173 TGCTGCATCATATTCCTTCTTCAG 59.180 41.667 0.00 0.00 0.00 3.02
5640 6390 4.497006 CCTTCTTCAGTGTCAAACTTGCAG 60.497 45.833 0.00 0.00 36.83 4.41
5675 6452 0.179215 GTCAAACTCGCGCAATCTGG 60.179 55.000 8.75 0.00 0.00 3.86
5716 6493 0.831288 AGGAGGCTCCTCATGATCCG 60.831 60.000 30.46 0.00 45.66 4.18
5873 6650 1.048724 TGAACCCTAGCCTGATCCCG 61.049 60.000 0.00 0.00 0.00 5.14
5912 6689 3.058777 CCTGTTTGCACATGGAAAATTGC 60.059 43.478 0.00 0.00 37.12 3.56
5925 6702 4.397103 TGGAAAATTGCAGTATCAGCTGAG 59.603 41.667 22.96 9.46 38.70 3.35
5932 6709 3.198417 TGCAGTATCAGCTGAGGAAATCA 59.802 43.478 22.96 12.11 38.70 2.57
5954 6745 8.709386 ATCAGAAGTATATCAAACCATATCGC 57.291 34.615 0.00 0.00 0.00 4.58
5956 6747 6.035005 CAGAAGTATATCAAACCATATCGCCG 59.965 42.308 0.00 0.00 0.00 6.46
6023 6814 1.453155 CGCCTTGGCATAGACTGTTT 58.547 50.000 12.45 0.00 0.00 2.83
6032 6823 2.290323 GCATAGACTGTTTCCCCACTGT 60.290 50.000 0.00 0.00 0.00 3.55
6035 6826 1.417890 AGACTGTTTCCCCACTGTCAG 59.582 52.381 11.83 0.00 44.18 3.51
6051 6842 2.675844 TGTCAGACAAACAGGTTCAACG 59.324 45.455 0.00 0.00 0.00 4.10
6067 6858 6.423001 AGGTTCAACGTAAACATCAGTTCTAC 59.577 38.462 13.74 0.00 36.84 2.59
6068 6859 6.347160 GGTTCAACGTAAACATCAGTTCTACC 60.347 42.308 13.74 0.00 36.84 3.18
6084 6875 6.094048 CAGTTCTACCTGGGTGTATTGAATTG 59.906 42.308 2.07 3.54 0.00 2.32
6085 6876 5.772393 TCTACCTGGGTGTATTGAATTGT 57.228 39.130 2.07 0.00 0.00 2.71
6086 6877 6.877668 TCTACCTGGGTGTATTGAATTGTA 57.122 37.500 2.07 0.00 0.00 2.41
6087 6878 6.646267 TCTACCTGGGTGTATTGAATTGTAC 58.354 40.000 2.07 0.00 0.00 2.90
6088 6879 5.514500 ACCTGGGTGTATTGAATTGTACT 57.486 39.130 0.00 0.00 0.00 2.73
6089 6880 6.630203 ACCTGGGTGTATTGAATTGTACTA 57.370 37.500 0.00 0.00 0.00 1.82
6090 6881 7.023171 ACCTGGGTGTATTGAATTGTACTAA 57.977 36.000 0.00 0.00 0.00 2.24
6091 6882 7.639378 ACCTGGGTGTATTGAATTGTACTAAT 58.361 34.615 0.00 0.00 0.00 1.73
6092 6883 8.774183 ACCTGGGTGTATTGAATTGTACTAATA 58.226 33.333 0.00 0.00 0.00 0.98
6093 6884 9.052759 CCTGGGTGTATTGAATTGTACTAATAC 57.947 37.037 0.00 0.00 36.83 1.89
6107 6898 5.929992 TGTACTAATACACCAAGCAGTTCAC 59.070 40.000 0.00 0.00 36.34 3.18
6115 6906 0.595095 CAAGCAGTTCACCTGAAGGC 59.405 55.000 0.00 4.25 44.49 4.35
6131 6922 2.541233 AGGCCTAAGCTGAGAGAGAA 57.459 50.000 1.29 0.00 39.73 2.87
6132 6923 2.387757 AGGCCTAAGCTGAGAGAGAAG 58.612 52.381 1.29 0.00 39.73 2.85
6133 6924 2.024464 AGGCCTAAGCTGAGAGAGAAGA 60.024 50.000 1.29 0.00 39.73 2.87
6134 6925 2.100749 GGCCTAAGCTGAGAGAGAAGAC 59.899 54.545 0.00 0.00 39.73 3.01
6135 6926 2.100749 GCCTAAGCTGAGAGAGAAGACC 59.899 54.545 0.00 0.00 35.50 3.85
6290 7125 2.280592 GGCGGTTTCACGGACACT 60.281 61.111 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.829507 TCTTTGTTGTCAATCCACAATTTAATT 57.170 25.926 0.00 0.00 38.53 1.40
38 39 9.260002 GTCTTTGTTGTCAATCCACAATTTAAT 57.740 29.630 0.00 0.00 38.53 1.40
39 40 7.708752 GGTCTTTGTTGTCAATCCACAATTTAA 59.291 33.333 0.00 0.00 38.53 1.52
40 41 7.147828 TGGTCTTTGTTGTCAATCCACAATTTA 60.148 33.333 0.00 0.00 38.53 1.40
41 42 6.048509 GGTCTTTGTTGTCAATCCACAATTT 58.951 36.000 0.00 0.00 38.53 1.82
42 43 5.128499 TGGTCTTTGTTGTCAATCCACAATT 59.872 36.000 0.00 0.00 38.53 2.32
43 44 4.648762 TGGTCTTTGTTGTCAATCCACAAT 59.351 37.500 0.00 0.00 38.53 2.71
44 45 4.019858 TGGTCTTTGTTGTCAATCCACAA 58.980 39.130 0.00 0.00 33.75 3.33
45 46 3.625853 TGGTCTTTGTTGTCAATCCACA 58.374 40.909 0.00 0.00 33.32 4.17
46 47 4.549458 CATGGTCTTTGTTGTCAATCCAC 58.451 43.478 0.00 0.00 34.70 4.02
47 48 3.573538 CCATGGTCTTTGTTGTCAATCCA 59.426 43.478 2.57 0.00 35.52 3.41
48 49 3.614870 GCCATGGTCTTTGTTGTCAATCC 60.615 47.826 14.67 0.00 33.32 3.01
49 50 3.005684 TGCCATGGTCTTTGTTGTCAATC 59.994 43.478 14.67 0.00 33.32 2.67
50 51 2.964464 TGCCATGGTCTTTGTTGTCAAT 59.036 40.909 14.67 0.00 33.32 2.57
51 52 2.382882 TGCCATGGTCTTTGTTGTCAA 58.617 42.857 14.67 0.00 0.00 3.18
52 53 2.064434 TGCCATGGTCTTTGTTGTCA 57.936 45.000 14.67 0.00 0.00 3.58
142 143 8.328146 GTTGTTAGAAAAAGGTTCTTTGCAATC 58.672 33.333 0.00 0.00 0.00 2.67
202 203 1.062121 ACTATCTTGCAGGGGCCTCTA 60.062 52.381 3.71 0.00 40.13 2.43
254 255 4.322080 TGTGAGTGGTTCTTGTAGACAG 57.678 45.455 0.00 0.00 0.00 3.51
288 289 3.261580 TGATGACTCATTGCTACAACGG 58.738 45.455 0.00 0.00 0.00 4.44
310 311 1.078848 GAAGTCCTCGTGGCAGCAT 60.079 57.895 0.00 0.00 0.00 3.79
314 315 1.691195 TTGGTGAAGTCCTCGTGGCA 61.691 55.000 0.00 0.00 0.00 4.92
327 328 4.103153 ACTGAAGGAGAATTCACTTGGTGA 59.897 41.667 16.98 0.00 41.09 4.02
370 371 3.376918 GCCCAAACAGCCCAGAGC 61.377 66.667 0.00 0.00 44.25 4.09
374 375 1.152376 TCATTGCCCAAACAGCCCA 60.152 52.632 0.00 0.00 0.00 5.36
377 378 1.444895 CGCTCATTGCCCAAACAGC 60.445 57.895 5.08 5.08 38.78 4.40
379 380 2.198969 TGCGCTCATTGCCCAAACA 61.199 52.632 9.73 0.00 38.78 2.83
383 384 3.866379 AAGGTGCGCTCATTGCCCA 62.866 57.895 9.73 0.00 38.78 5.36
403 429 2.105477 CCTAGGACCTTGATGTCATGGG 59.895 54.545 1.05 9.47 43.28 4.00
436 462 6.373779 GTTGCTTTTCTTCATCATCGAGAAA 58.626 36.000 0.00 0.00 37.56 2.52
463 489 1.173913 TCCTTTCTCGATGACAGCGA 58.826 50.000 15.85 15.85 36.23 4.93
469 495 3.997021 GACTGCTTTTCCTTTCTCGATGA 59.003 43.478 0.00 0.00 0.00 2.92
471 497 4.020662 AGAGACTGCTTTTCCTTTCTCGAT 60.021 41.667 0.00 0.00 35.64 3.59
472 498 3.322254 AGAGACTGCTTTTCCTTTCTCGA 59.678 43.478 0.00 0.00 35.64 4.04
489 515 7.746475 GTGTTAGTTCATTTGCACAATAGAGAC 59.254 37.037 0.00 0.00 0.00 3.36
589 619 5.591472 TCCGAACTTATTCCTATTCTGACGA 59.409 40.000 0.00 0.00 0.00 4.20
598 628 5.416271 AAGTGCTTCCGAACTTATTCCTA 57.584 39.130 0.00 0.00 37.25 2.94
604 634 8.780846 TCATTAAATAAGTGCTTCCGAACTTA 57.219 30.769 0.00 0.00 43.66 2.24
607 637 7.748847 TCTTCATTAAATAAGTGCTTCCGAAC 58.251 34.615 0.00 0.00 0.00 3.95
608 638 7.822334 TCTCTTCATTAAATAAGTGCTTCCGAA 59.178 33.333 0.00 0.00 0.00 4.30
616 646 6.634436 GCGGCAATCTCTTCATTAAATAAGTG 59.366 38.462 0.00 0.06 0.00 3.16
626 656 1.091771 CGTGGCGGCAATCTCTTCAT 61.092 55.000 15.50 0.00 0.00 2.57
737 770 9.793252 AATATATGGAATCAATATTCTTTGCGC 57.207 29.630 0.00 0.00 41.18 6.09
770 803 0.320160 GCCCAGCTTGCTTTTTCCTG 60.320 55.000 0.00 0.00 0.00 3.86
791 825 1.629013 CACAGCTCGCGATTAAGACA 58.371 50.000 10.36 0.00 0.00 3.41
806 840 2.182842 GCTAATCGGCCTGCCACAG 61.183 63.158 9.17 0.43 35.37 3.66
863 897 0.525668 CTGCTGGGACGTCGATGTAC 60.526 60.000 11.84 11.84 0.00 2.90
865 899 0.963856 TACTGCTGGGACGTCGATGT 60.964 55.000 10.75 10.75 0.00 3.06
869 903 0.456221 AGATTACTGCTGGGACGTCG 59.544 55.000 9.92 0.00 0.00 5.12
876 910 3.520290 TGGTTACGAGATTACTGCTGG 57.480 47.619 0.00 0.00 0.00 4.85
878 912 4.530710 TGTTGGTTACGAGATTACTGCT 57.469 40.909 0.00 0.00 0.00 4.24
879 913 5.600908 TTTGTTGGTTACGAGATTACTGC 57.399 39.130 0.00 0.00 0.00 4.40
1030 1077 2.218953 TTTACCGCGGAGATCATGAC 57.781 50.000 35.90 0.00 0.00 3.06
1130 1180 4.284490 GCATGGGTAGATAGATTCAGTGGA 59.716 45.833 0.00 0.00 0.00 4.02
1131 1181 4.573900 GCATGGGTAGATAGATTCAGTGG 58.426 47.826 0.00 0.00 0.00 4.00
1307 1357 2.693591 ACTTGGAACAGAGAACGAGTCA 59.306 45.455 0.00 0.00 42.39 3.41
1376 1426 3.804036 TCAATTCGAACAGAACCACAGT 58.196 40.909 0.00 0.00 42.39 3.55
1377 1427 5.149273 CAATCAATTCGAACAGAACCACAG 58.851 41.667 0.00 0.00 42.39 3.66
1389 1439 6.616947 GGACATAACCAAACAATCAATTCGA 58.383 36.000 0.00 0.00 0.00 3.71
1439 1490 2.806244 ACACATATAGCGGGCGAAAATC 59.194 45.455 0.00 0.00 0.00 2.17
1542 1594 7.624344 GCACACCACTGAGTTCATTAATTACTC 60.624 40.741 15.78 15.78 38.96 2.59
1590 1642 8.991783 AATATTTTAAGGGCTTTCTAGTACCC 57.008 34.615 0.00 0.00 43.17 3.69
1636 1688 8.579006 TCCTGTAGTTTTCTTTCGTCATACTTA 58.421 33.333 0.00 0.00 0.00 2.24
1637 1689 7.384387 GTCCTGTAGTTTTCTTTCGTCATACTT 59.616 37.037 0.00 0.00 0.00 2.24
1638 1690 6.867293 GTCCTGTAGTTTTCTTTCGTCATACT 59.133 38.462 0.00 0.00 0.00 2.12
1639 1691 6.643770 TGTCCTGTAGTTTTCTTTCGTCATAC 59.356 38.462 0.00 0.00 0.00 2.39
1640 1692 6.751157 TGTCCTGTAGTTTTCTTTCGTCATA 58.249 36.000 0.00 0.00 0.00 2.15
1641 1693 5.607477 TGTCCTGTAGTTTTCTTTCGTCAT 58.393 37.500 0.00 0.00 0.00 3.06
1642 1694 5.013568 TGTCCTGTAGTTTTCTTTCGTCA 57.986 39.130 0.00 0.00 0.00 4.35
1687 1745 3.715495 CTGCTCTCTATTGCGACTTCAT 58.285 45.455 0.00 0.00 0.00 2.57
1692 1750 2.783828 TAGCTGCTCTCTATTGCGAC 57.216 50.000 4.91 0.00 0.00 5.19
1717 1775 3.026707 TCGACTCCCATTGTCCTGATA 57.973 47.619 0.00 0.00 0.00 2.15
1730 1788 5.927115 GTGTTCCTTCCATATAATCGACTCC 59.073 44.000 0.00 0.00 0.00 3.85
1846 2018 1.280421 GGTGATCAAAGGCAGGAGAGT 59.720 52.381 0.00 0.00 0.00 3.24
1952 2261 4.272489 TCTTATTCAAACCATGCAGGAGG 58.728 43.478 0.00 0.00 41.22 4.30
1990 2299 9.841880 GTATTTCCTCTTTAAGCGAAGAATTTT 57.158 29.630 0.00 0.00 35.38 1.82
1991 2300 9.232473 AGTATTTCCTCTTTAAGCGAAGAATTT 57.768 29.630 0.00 0.00 35.38 1.82
1994 2303 7.876068 TGAAGTATTTCCTCTTTAAGCGAAGAA 59.124 33.333 0.00 0.00 35.38 2.52
2121 2430 7.231317 TGCTTGAATGAATTAGAAAACTCACCT 59.769 33.333 0.00 0.00 0.00 4.00
2206 2608 6.313658 TGTCATTCCGTGATCATCTTTGTTAG 59.686 38.462 0.00 0.00 39.48 2.34
2221 2623 3.953612 ACAATATTGCCATGTCATTCCGT 59.046 39.130 15.48 0.00 0.00 4.69
2303 2705 6.122964 GGAGGTCAATTCAATAGGCTAAACT 58.877 40.000 0.00 0.00 0.00 2.66
2447 2850 9.571810 CAAATTAGTAAATCAATAGCAGCACAA 57.428 29.630 0.00 0.00 0.00 3.33
2537 2940 3.871594 GCCACTCAAAATCACTATAGCGT 59.128 43.478 0.00 0.00 0.00 5.07
2698 3101 1.821216 ATTGGCACTAAAGTGGTCCG 58.179 50.000 11.86 0.00 45.72 4.79
2699 3102 4.705023 ACAATATTGGCACTAAAGTGGTCC 59.295 41.667 19.37 6.11 45.72 4.46
2740 3143 7.573968 AAGAATAGAGCAAAGAAACAACAGT 57.426 32.000 0.00 0.00 0.00 3.55
3126 3533 6.860023 GCTACAGCAATAATGATCAAATCACC 59.140 38.462 0.00 0.00 40.76 4.02
3147 3554 6.739112 AGTTCCTTGAAAATTTCAGTGCTAC 58.261 36.000 8.51 5.52 41.38 3.58
3149 3556 5.859205 AGTTCCTTGAAAATTTCAGTGCT 57.141 34.783 8.51 2.43 41.38 4.40
3272 3680 2.859526 TTTTCTGTTTCATGCACGCA 57.140 40.000 0.00 0.00 0.00 5.24
3368 3776 4.517285 GACATCTTACTGGGCAATGAAGA 58.483 43.478 0.00 0.00 0.00 2.87
3690 4098 8.303876 CCAACTATTAACCAGTAACTGCAAATT 58.696 33.333 0.00 0.00 0.00 1.82
3691 4099 7.450323 ACCAACTATTAACCAGTAACTGCAAAT 59.550 33.333 0.00 0.00 0.00 2.32
3692 4100 6.773685 ACCAACTATTAACCAGTAACTGCAAA 59.226 34.615 0.00 0.00 0.00 3.68
3693 4101 6.300703 ACCAACTATTAACCAGTAACTGCAA 58.699 36.000 0.00 0.00 0.00 4.08
3721 4176 7.278868 CCTTTGACTGTACATCCTACAGAAATC 59.721 40.741 13.23 3.05 45.69 2.17
3929 4385 8.902806 CATTTTACTGCTATTTTACATCAGGGA 58.097 33.333 0.00 0.00 0.00 4.20
3978 4434 9.449719 GGTCATCTAGTTCTATCTTTTTGGAAA 57.550 33.333 0.00 0.00 0.00 3.13
3995 4451 1.487976 ACCATGCACCAGGTCATCTAG 59.512 52.381 1.67 0.00 30.79 2.43
4083 4539 4.546570 GTCTTGCAATCCAGTTTAACACC 58.453 43.478 0.00 0.00 0.00 4.16
4111 4567 9.130661 TCTAATGAAAGAAAAACAGAATGGTGA 57.869 29.630 0.00 0.00 27.21 4.02
4122 4578 7.118496 TGCCCAAGTTCTAATGAAAGAAAAA 57.882 32.000 0.00 0.00 37.24 1.94
4461 5124 9.466497 TTTGCAGTTAATAGATGGAAGAGAAAT 57.534 29.630 0.00 0.00 0.00 2.17
4509 5172 6.703165 ACCTCAATTTGCTTTGACATTTCTTC 59.297 34.615 0.00 0.00 32.39 2.87
4511 5174 6.165700 ACCTCAATTTGCTTTGACATTTCT 57.834 33.333 0.00 0.00 32.39 2.52
4686 5349 0.169009 GTGAAAGAACTCCGCCATGC 59.831 55.000 0.00 0.00 0.00 4.06
4726 5418 2.713828 ATTGGTAGGGCCCAGTTTTT 57.286 45.000 27.56 3.89 35.49 1.94
4736 5428 6.211384 ACTCTGGAATTTTCAAATTGGTAGGG 59.789 38.462 2.17 1.52 38.64 3.53
4770 5462 8.386606 GTGTTGTGCTAAGAGATTAGAGATTTG 58.613 37.037 0.00 0.00 0.00 2.32
4801 5493 5.352284 ACATGAGATCGACACAAGGATTAC 58.648 41.667 0.00 0.00 0.00 1.89
4802 5494 5.598416 ACATGAGATCGACACAAGGATTA 57.402 39.130 0.00 0.00 0.00 1.75
4803 5495 4.478206 ACATGAGATCGACACAAGGATT 57.522 40.909 0.00 0.00 0.00 3.01
4805 5497 3.961480 AACATGAGATCGACACAAGGA 57.039 42.857 0.00 0.00 0.00 3.36
4806 5498 6.668541 AATAAACATGAGATCGACACAAGG 57.331 37.500 0.00 0.00 0.00 3.61
4807 5499 7.007725 GCAAAATAAACATGAGATCGACACAAG 59.992 37.037 0.00 0.00 0.00 3.16
4809 5501 6.072783 TGCAAAATAAACATGAGATCGACACA 60.073 34.615 0.00 0.00 0.00 3.72
4810 5502 6.249260 GTGCAAAATAAACATGAGATCGACAC 59.751 38.462 0.00 0.00 0.00 3.67
4812 5504 6.546395 AGTGCAAAATAAACATGAGATCGAC 58.454 36.000 0.00 0.00 0.00 4.20
4813 5505 6.741992 AGTGCAAAATAAACATGAGATCGA 57.258 33.333 0.00 0.00 0.00 3.59
4818 5510 9.507280 CAGGTAATAGTGCAAAATAAACATGAG 57.493 33.333 0.00 0.00 0.00 2.90
4821 5513 8.588290 TCCAGGTAATAGTGCAAAATAAACAT 57.412 30.769 0.00 0.00 0.00 2.71
4822 5514 8.410673 TTCCAGGTAATAGTGCAAAATAAACA 57.589 30.769 0.00 0.00 0.00 2.83
4830 5571 7.450014 TGAGAAAATTTCCAGGTAATAGTGCAA 59.550 33.333 1.57 0.00 0.00 4.08
4833 5574 8.338259 CGATGAGAAAATTTCCAGGTAATAGTG 58.662 37.037 1.57 0.00 0.00 2.74
4859 5600 8.256611 TCATCTTTTCACTGCAGTAAGAATAC 57.743 34.615 26.35 0.00 0.00 1.89
4880 5621 4.836825 TCTCAGGGTTCATGAACTTCATC 58.163 43.478 31.81 18.02 40.94 2.92
4945 5686 4.678287 TCGCGCGATATAGTTCCTTAAAAG 59.322 41.667 31.40 0.00 0.00 2.27
4955 5696 0.591659 TTCTGCTCGCGCGATATAGT 59.408 50.000 34.86 0.00 39.65 2.12
4960 5703 1.349627 CAATTTCTGCTCGCGCGAT 59.650 52.632 34.86 14.23 39.65 4.58
4964 5707 2.171567 CATTCACAATTTCTGCTCGCG 58.828 47.619 0.00 0.00 0.00 5.87
4985 5728 6.477360 ACAAAACACCGGTCAAACAAATTATC 59.523 34.615 2.59 0.00 0.00 1.75
5021 5764 1.081641 CTGGCTGCTTTCAACTGCG 60.082 57.895 0.00 0.00 33.24 5.18
5151 5894 4.837896 AGCTAACTTTGCTTGACCTTTC 57.162 40.909 0.00 0.00 37.52 2.62
5200 5943 1.135960 GCCTCTAGCTTTGGGAGGAT 58.864 55.000 21.06 0.00 46.82 3.24
5350 6094 5.973565 GTCAATATAACAACTGGAGCATTGC 59.026 40.000 0.00 0.00 0.00 3.56
5377 6121 2.223089 ACACGCACACGGTAAAGAAAAC 60.223 45.455 0.00 0.00 46.04 2.43
5577 6327 6.183360 CGATTGCCTTTCTCTGTTGATACAAT 60.183 38.462 0.00 0.00 32.92 2.71
5597 6347 3.501062 AGGAATATGATGCAGCACGATTG 59.499 43.478 16.29 0.00 0.00 2.67
5602 6352 4.577693 TGAAGAAGGAATATGATGCAGCAC 59.422 41.667 6.89 0.00 0.00 4.40
5614 6364 5.221126 GCAAGTTTGACACTGAAGAAGGAAT 60.221 40.000 0.00 0.00 35.12 3.01
5626 6376 4.818534 TCAGATTCTGCAAGTTTGACAC 57.181 40.909 8.89 0.00 33.76 3.67
5640 6390 4.276926 AGTTTGACAAGCCTGTTCAGATTC 59.723 41.667 1.00 0.00 35.30 2.52
5675 6452 0.391661 TGGCGCTTCAGAAGTCCATC 60.392 55.000 17.34 0.00 31.56 3.51
5873 6650 2.034221 GTGGACAAGGTGGAGGGC 59.966 66.667 0.00 0.00 0.00 5.19
5932 6709 6.100004 CGGCGATATGGTTTGATATACTTCT 58.900 40.000 0.00 0.00 0.00 2.85
5940 6717 0.108585 AGCCGGCGATATGGTTTGAT 59.891 50.000 23.20 0.00 0.00 2.57
5941 6718 0.531974 GAGCCGGCGATATGGTTTGA 60.532 55.000 23.20 0.00 0.00 2.69
5942 6719 0.532862 AGAGCCGGCGATATGGTTTG 60.533 55.000 23.20 0.00 0.00 2.93
5943 6720 0.249911 GAGAGCCGGCGATATGGTTT 60.250 55.000 23.20 0.00 0.00 3.27
5971 6762 1.912731 TGCCAGTGCCTATCAAGGTAA 59.087 47.619 0.00 0.00 45.64 2.85
6014 6805 2.632996 CTGACAGTGGGGAAACAGTCTA 59.367 50.000 0.00 0.00 37.45 2.59
6023 6814 1.140852 CTGTTTGTCTGACAGTGGGGA 59.859 52.381 10.77 0.00 39.66 4.81
6032 6823 2.980568 ACGTTGAACCTGTTTGTCTGA 58.019 42.857 0.00 0.00 0.00 3.27
6035 6826 4.972201 TGTTTACGTTGAACCTGTTTGTC 58.028 39.130 0.00 0.00 0.00 3.18
6051 6842 4.935808 CACCCAGGTAGAACTGATGTTTAC 59.064 45.833 0.00 0.00 40.97 2.01
6067 6858 9.052759 GTATTAGTACAATTCAATACACCCAGG 57.947 37.037 0.00 0.00 35.11 4.45
6068 6859 9.607988 TGTATTAGTACAATTCAATACACCCAG 57.392 33.333 0.00 0.00 38.36 4.45
6084 6875 5.350640 GGTGAACTGCTTGGTGTATTAGTAC 59.649 44.000 0.00 0.00 0.00 2.73
6085 6876 5.247564 AGGTGAACTGCTTGGTGTATTAGTA 59.752 40.000 0.00 0.00 0.00 1.82
6086 6877 4.041691 AGGTGAACTGCTTGGTGTATTAGT 59.958 41.667 0.00 0.00 0.00 2.24
6087 6878 4.393062 CAGGTGAACTGCTTGGTGTATTAG 59.607 45.833 0.00 0.00 40.97 1.73
6088 6879 4.323417 CAGGTGAACTGCTTGGTGTATTA 58.677 43.478 0.00 0.00 40.97 0.98
6089 6880 3.149196 CAGGTGAACTGCTTGGTGTATT 58.851 45.455 0.00 0.00 40.97 1.89
6090 6881 2.783135 CAGGTGAACTGCTTGGTGTAT 58.217 47.619 0.00 0.00 40.97 2.29
6091 6882 2.254546 CAGGTGAACTGCTTGGTGTA 57.745 50.000 0.00 0.00 40.97 2.90
6092 6883 3.100545 CAGGTGAACTGCTTGGTGT 57.899 52.632 0.00 0.00 40.97 4.16
6107 6898 1.138661 CTCTCAGCTTAGGCCTTCAGG 59.861 57.143 12.58 0.00 39.73 3.86
6115 6906 3.360867 TGGTCTTCTCTCTCAGCTTAGG 58.639 50.000 0.00 0.00 0.00 2.69
6131 6922 5.337652 GGTCAGTAGTAAGCATTTCTGGTCT 60.338 44.000 0.00 0.00 31.28 3.85
6132 6923 4.870991 GGTCAGTAGTAAGCATTTCTGGTC 59.129 45.833 0.00 0.00 31.28 4.02
6133 6924 4.532521 AGGTCAGTAGTAAGCATTTCTGGT 59.467 41.667 0.00 0.00 33.62 4.00
6134 6925 4.872691 CAGGTCAGTAGTAAGCATTTCTGG 59.127 45.833 0.00 0.00 0.00 3.86
6135 6926 5.724328 TCAGGTCAGTAGTAAGCATTTCTG 58.276 41.667 0.00 0.00 0.00 3.02
6278 7113 0.534203 GGGCAAGAGTGTCCGTGAAA 60.534 55.000 0.00 0.00 40.47 2.69
6290 7125 1.065410 TCCCCAGTTTCAGGGCAAGA 61.065 55.000 0.00 0.00 45.39 3.02
6403 7238 2.567169 CTGTTGGTCCACAGGATCACTA 59.433 50.000 0.00 0.00 43.19 2.74
6443 7278 3.568538 CCAGAAAGAAAAGAACATGGCG 58.431 45.455 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.