Multiple sequence alignment - TraesCS3D01G366700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G366700 chr3D 100.000 4663 0 0 1 4663 480966702 480971364 0.000000e+00 8612.0
1 TraesCS3D01G366700 chr3D 74.948 966 198 36 2540 3480 349642848 349641902 2.020000e-108 403.0
2 TraesCS3D01G366700 chr3D 100.000 65 0 0 176 240 295293008 295293072 2.280000e-23 121.0
3 TraesCS3D01G366700 chr3B 85.960 4537 333 124 254 4663 641802248 641806607 0.000000e+00 4569.0
4 TraesCS3D01G366700 chr3B 74.587 968 198 38 2540 3480 448577920 448576974 9.470000e-102 381.0
5 TraesCS3D01G366700 chr3A 87.265 3408 186 114 1373 4663 623775646 623778922 0.000000e+00 3661.0
6 TraesCS3D01G366700 chr3A 79.622 687 61 43 246 896 623774785 623775428 2.010000e-113 420.0
7 TraesCS3D01G366700 chr3A 82.661 248 11 5 935 1173 623775427 623775651 1.710000e-44 191.0
8 TraesCS3D01G366700 chr3A 100.000 63 0 0 176 238 175955886 175955948 2.950000e-22 117.0
9 TraesCS3D01G366700 chr1D 79.749 958 167 16 2536 3481 371742505 371741563 0.000000e+00 669.0
10 TraesCS3D01G366700 chr1D 76.000 250 54 5 3235 3481 37437988 37437742 1.760000e-24 124.0
11 TraesCS3D01G366700 chr1D 100.000 65 0 0 176 240 453557169 453557233 2.280000e-23 121.0
12 TraesCS3D01G366700 chr1D 98.462 65 1 0 176 240 43200501 43200437 1.060000e-21 115.0
13 TraesCS3D01G366700 chr1B 79.228 958 172 17 2536 3481 496505838 496504896 3.930000e-180 641.0
14 TraesCS3D01G366700 chr1B 76.210 248 57 2 3235 3481 57023668 57023422 3.790000e-26 130.0
15 TraesCS3D01G366700 chr2A 74.792 960 209 24 2540 3481 507388961 507389905 7.270000e-108 401.0
16 TraesCS3D01G366700 chr4D 78.486 251 52 2 3238 3487 384670929 384671178 3.730000e-36 163.0
17 TraesCS3D01G366700 chr4B 77.689 251 54 2 3238 3487 471653269 471653518 8.080000e-33 152.0
18 TraesCS3D01G366700 chr4A 77.689 251 54 2 3238 3487 66339043 66339292 8.080000e-33 152.0
19 TraesCS3D01G366700 chr1A 76.000 250 54 5 3235 3481 31895661 31895907 1.760000e-24 124.0
20 TraesCS3D01G366700 chr1A 75.824 182 41 3 3302 3481 36620492 36620312 6.430000e-14 89.8
21 TraesCS3D01G366700 chr7D 100.000 65 0 0 176 240 329527738 329527802 2.280000e-23 121.0
22 TraesCS3D01G366700 chr7D 100.000 65 0 0 176 240 620129495 620129431 2.280000e-23 121.0
23 TraesCS3D01G366700 chr7D 100.000 63 0 0 176 238 426184515 426184453 2.950000e-22 117.0
24 TraesCS3D01G366700 chr5D 100.000 63 0 0 176 238 245720245 245720307 2.950000e-22 117.0
25 TraesCS3D01G366700 chr6D 98.462 65 1 0 176 240 436427641 436427705 1.060000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G366700 chr3D 480966702 480971364 4662 False 8612 8612 100.000000 1 4663 1 chr3D.!!$F2 4662
1 TraesCS3D01G366700 chr3D 349641902 349642848 946 True 403 403 74.948000 2540 3480 1 chr3D.!!$R1 940
2 TraesCS3D01G366700 chr3B 641802248 641806607 4359 False 4569 4569 85.960000 254 4663 1 chr3B.!!$F1 4409
3 TraesCS3D01G366700 chr3B 448576974 448577920 946 True 381 381 74.587000 2540 3480 1 chr3B.!!$R1 940
4 TraesCS3D01G366700 chr3A 623774785 623778922 4137 False 1424 3661 83.182667 246 4663 3 chr3A.!!$F2 4417
5 TraesCS3D01G366700 chr1D 371741563 371742505 942 True 669 669 79.749000 2536 3481 1 chr1D.!!$R3 945
6 TraesCS3D01G366700 chr1B 496504896 496505838 942 True 641 641 79.228000 2536 3481 1 chr1B.!!$R2 945
7 TraesCS3D01G366700 chr2A 507388961 507389905 944 False 401 401 74.792000 2540 3481 1 chr2A.!!$F1 941

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 152 0.038166 AGGGCATTCACATTCACCGT 59.962 50.0 0.0 0.0 0.00 4.83 F
1318 1385 0.034896 GTTTCCAGGAGCAACCGAGA 59.965 55.0 0.0 0.0 44.74 4.04 F
2032 2200 0.095417 GCGTCGAATTGCTCTTCCAC 59.905 55.0 0.0 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1445 1532 0.035439 AGGAGTGCCAAATACCACCG 60.035 55.0 0.0 0.0 36.29 4.94 R
2248 2429 0.687354 AGTTGCGGTCAGGTGAGATT 59.313 50.0 0.0 0.0 0.00 2.40 R
3825 4039 0.243907 CGTGCCTTTTCCTCTCGAGA 59.756 55.0 15.7 15.7 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.183478 TATATGCACCAAGATGCCGG 57.817 50.000 0.00 0.00 45.50 6.13
22 23 0.538057 ATATGCACCAAGATGCCGGG 60.538 55.000 2.18 0.00 45.50 5.73
23 24 2.623094 TATGCACCAAGATGCCGGGG 62.623 60.000 2.18 0.00 45.50 5.73
44 45 4.495911 GGCAACCTTCTTTCTGAGAAAG 57.504 45.455 25.09 25.09 43.56 2.62
45 46 3.254411 GGCAACCTTCTTTCTGAGAAAGG 59.746 47.826 28.78 19.40 43.56 3.11
46 47 4.137543 GCAACCTTCTTTCTGAGAAAGGA 58.862 43.478 28.78 22.31 43.56 3.36
47 48 4.215185 GCAACCTTCTTTCTGAGAAAGGAG 59.785 45.833 28.56 28.56 43.56 3.69
49 50 4.632327 CCTTCTTTCTGAGAAAGGAGGT 57.368 45.455 37.67 0.00 44.48 3.85
50 51 4.574892 CCTTCTTTCTGAGAAAGGAGGTC 58.425 47.826 37.67 0.00 44.48 3.85
51 52 3.944055 TCTTTCTGAGAAAGGAGGTCG 57.056 47.619 28.78 8.16 0.00 4.79
52 53 3.497332 TCTTTCTGAGAAAGGAGGTCGA 58.503 45.455 28.78 10.21 0.00 4.20
53 54 4.090090 TCTTTCTGAGAAAGGAGGTCGAT 58.910 43.478 28.78 0.00 0.00 3.59
54 55 4.528596 TCTTTCTGAGAAAGGAGGTCGATT 59.471 41.667 28.78 0.00 0.00 3.34
55 56 4.457834 TTCTGAGAAAGGAGGTCGATTC 57.542 45.455 0.00 0.00 0.00 2.52
56 57 2.423892 TCTGAGAAAGGAGGTCGATTCG 59.576 50.000 0.00 0.00 0.00 3.34
57 58 2.164624 CTGAGAAAGGAGGTCGATTCGT 59.835 50.000 5.89 0.00 0.00 3.85
58 59 2.094700 TGAGAAAGGAGGTCGATTCGTG 60.095 50.000 5.89 0.00 0.00 4.35
59 60 1.000145 GAAAGGAGGTCGATTCGTGC 59.000 55.000 5.89 0.74 0.00 5.34
60 61 0.736325 AAAGGAGGTCGATTCGTGCG 60.736 55.000 5.89 0.00 0.00 5.34
61 62 1.592400 AAGGAGGTCGATTCGTGCGA 61.592 55.000 5.89 0.00 35.08 5.10
62 63 1.153901 GGAGGTCGATTCGTGCGAA 60.154 57.895 9.50 9.50 39.73 4.70
63 64 1.140407 GGAGGTCGATTCGTGCGAAG 61.140 60.000 12.54 0.83 39.73 3.79
64 65 0.456312 GAGGTCGATTCGTGCGAAGT 60.456 55.000 12.54 1.87 39.73 3.01
65 66 0.732880 AGGTCGATTCGTGCGAAGTG 60.733 55.000 12.54 7.52 39.73 3.16
66 67 0.731514 GGTCGATTCGTGCGAAGTGA 60.732 55.000 12.54 9.51 39.73 3.41
67 68 1.269166 GTCGATTCGTGCGAAGTGAT 58.731 50.000 12.54 0.00 39.73 3.06
68 69 1.654105 GTCGATTCGTGCGAAGTGATT 59.346 47.619 12.54 0.00 39.73 2.57
69 70 2.092211 GTCGATTCGTGCGAAGTGATTT 59.908 45.455 12.54 0.00 39.73 2.17
70 71 2.344441 TCGATTCGTGCGAAGTGATTTC 59.656 45.455 12.54 3.76 37.56 2.17
71 72 2.345641 CGATTCGTGCGAAGTGATTTCT 59.654 45.455 12.54 0.00 37.56 2.52
72 73 3.540359 CGATTCGTGCGAAGTGATTTCTC 60.540 47.826 12.54 2.49 37.56 2.87
73 74 1.336877 TCGTGCGAAGTGATTTCTCG 58.663 50.000 0.00 0.00 33.44 4.04
74 75 1.060713 CGTGCGAAGTGATTTCTCGT 58.939 50.000 0.00 0.00 33.44 4.18
75 76 1.201704 CGTGCGAAGTGATTTCTCGTG 60.202 52.381 0.00 0.00 33.44 4.35
76 77 0.790207 TGCGAAGTGATTTCTCGTGC 59.210 50.000 0.00 0.00 33.44 5.34
77 78 0.790207 GCGAAGTGATTTCTCGTGCA 59.210 50.000 0.00 0.00 33.44 4.57
78 79 1.394917 GCGAAGTGATTTCTCGTGCAT 59.605 47.619 0.00 0.00 33.44 3.96
79 80 2.535732 GCGAAGTGATTTCTCGTGCATC 60.536 50.000 0.00 0.00 33.44 3.91
80 81 2.029728 CGAAGTGATTTCTCGTGCATCC 59.970 50.000 0.00 0.00 33.44 3.51
81 82 1.645034 AGTGATTTCTCGTGCATCCG 58.355 50.000 0.00 0.00 0.00 4.18
82 83 1.204704 AGTGATTTCTCGTGCATCCGA 59.795 47.619 0.00 0.00 35.22 4.55
83 84 1.999735 GTGATTTCTCGTGCATCCGAA 59.000 47.619 0.87 0.00 36.24 4.30
84 85 2.415168 GTGATTTCTCGTGCATCCGAAA 59.585 45.455 0.87 5.50 36.24 3.46
85 86 3.070748 TGATTTCTCGTGCATCCGAAAA 58.929 40.909 10.06 9.15 36.24 2.29
86 87 3.125146 TGATTTCTCGTGCATCCGAAAAG 59.875 43.478 10.06 0.00 36.24 2.27
87 88 2.448926 TTCTCGTGCATCCGAAAAGA 57.551 45.000 0.87 0.00 36.24 2.52
88 89 1.710013 TCTCGTGCATCCGAAAAGAC 58.290 50.000 0.87 0.00 36.24 3.01
89 90 1.000394 TCTCGTGCATCCGAAAAGACA 60.000 47.619 0.87 0.00 36.24 3.41
90 91 1.798223 CTCGTGCATCCGAAAAGACAA 59.202 47.619 0.87 0.00 36.24 3.18
91 92 2.214347 TCGTGCATCCGAAAAGACAAA 58.786 42.857 0.00 0.00 33.15 2.83
92 93 2.223144 TCGTGCATCCGAAAAGACAAAG 59.777 45.455 0.00 0.00 33.15 2.77
93 94 2.319472 GTGCATCCGAAAAGACAAAGC 58.681 47.619 0.00 0.00 0.00 3.51
94 95 2.030805 GTGCATCCGAAAAGACAAAGCT 60.031 45.455 0.00 0.00 0.00 3.74
95 96 3.188460 GTGCATCCGAAAAGACAAAGCTA 59.812 43.478 0.00 0.00 0.00 3.32
96 97 3.436704 TGCATCCGAAAAGACAAAGCTAG 59.563 43.478 0.00 0.00 0.00 3.42
97 98 3.729163 GCATCCGAAAAGACAAAGCTAGC 60.729 47.826 6.62 6.62 0.00 3.42
98 99 3.402628 TCCGAAAAGACAAAGCTAGCT 57.597 42.857 12.68 12.68 0.00 3.32
99 100 3.067106 TCCGAAAAGACAAAGCTAGCTG 58.933 45.455 20.16 10.45 0.00 4.24
100 101 2.808543 CCGAAAAGACAAAGCTAGCTGT 59.191 45.455 20.16 14.10 0.00 4.40
101 102 3.994392 CCGAAAAGACAAAGCTAGCTGTA 59.006 43.478 20.16 0.00 0.00 2.74
102 103 4.451096 CCGAAAAGACAAAGCTAGCTGTAA 59.549 41.667 20.16 0.00 0.00 2.41
103 104 5.049680 CCGAAAAGACAAAGCTAGCTGTAAA 60.050 40.000 20.16 0.00 0.00 2.01
104 105 6.348540 CCGAAAAGACAAAGCTAGCTGTAAAT 60.349 38.462 20.16 1.08 0.00 1.40
105 106 7.148474 CCGAAAAGACAAAGCTAGCTGTAAATA 60.148 37.037 20.16 0.00 0.00 1.40
106 107 8.227791 CGAAAAGACAAAGCTAGCTGTAAATAA 58.772 33.333 20.16 0.00 0.00 1.40
110 111 8.664211 AGACAAAGCTAGCTGTAAATAATACC 57.336 34.615 20.16 0.00 0.00 2.73
111 112 8.265055 AGACAAAGCTAGCTGTAAATAATACCA 58.735 33.333 20.16 0.00 0.00 3.25
112 113 8.438676 ACAAAGCTAGCTGTAAATAATACCAG 57.561 34.615 20.16 0.00 0.00 4.00
113 114 8.047310 ACAAAGCTAGCTGTAAATAATACCAGT 58.953 33.333 20.16 0.00 0.00 4.00
114 115 9.542462 CAAAGCTAGCTGTAAATAATACCAGTA 57.458 33.333 20.16 0.00 0.00 2.74
115 116 9.765795 AAAGCTAGCTGTAAATAATACCAGTAG 57.234 33.333 20.16 0.00 0.00 2.57
116 117 8.480133 AGCTAGCTGTAAATAATACCAGTAGT 57.520 34.615 18.57 0.00 0.00 2.73
117 118 8.925338 AGCTAGCTGTAAATAATACCAGTAGTT 58.075 33.333 18.57 0.00 0.00 2.24
129 130 4.705337 ACCAGTAGTTAAGAGAGAAGCG 57.295 45.455 0.00 0.00 0.00 4.68
130 131 4.333690 ACCAGTAGTTAAGAGAGAAGCGA 58.666 43.478 0.00 0.00 0.00 4.93
131 132 4.156373 ACCAGTAGTTAAGAGAGAAGCGAC 59.844 45.833 0.00 0.00 0.00 5.19
132 133 4.156190 CCAGTAGTTAAGAGAGAAGCGACA 59.844 45.833 0.00 0.00 0.00 4.35
133 134 5.328691 CAGTAGTTAAGAGAGAAGCGACAG 58.671 45.833 0.00 0.00 0.00 3.51
134 135 3.859411 AGTTAAGAGAGAAGCGACAGG 57.141 47.619 0.00 0.00 0.00 4.00
135 136 2.494073 AGTTAAGAGAGAAGCGACAGGG 59.506 50.000 0.00 0.00 0.00 4.45
136 137 0.818296 TAAGAGAGAAGCGACAGGGC 59.182 55.000 0.00 0.00 0.00 5.19
137 138 1.188219 AAGAGAGAAGCGACAGGGCA 61.188 55.000 0.00 0.00 34.64 5.36
138 139 0.975040 AGAGAGAAGCGACAGGGCAT 60.975 55.000 0.00 0.00 34.64 4.40
139 140 0.107945 GAGAGAAGCGACAGGGCATT 60.108 55.000 0.00 0.00 34.64 3.56
140 141 0.107945 AGAGAAGCGACAGGGCATTC 60.108 55.000 0.00 0.00 34.64 2.67
141 142 0.391661 GAGAAGCGACAGGGCATTCA 60.392 55.000 0.00 0.00 34.64 2.57
142 143 0.674895 AGAAGCGACAGGGCATTCAC 60.675 55.000 0.00 0.00 34.64 3.18
143 144 0.955428 GAAGCGACAGGGCATTCACA 60.955 55.000 0.00 0.00 34.64 3.58
144 145 0.322816 AAGCGACAGGGCATTCACAT 60.323 50.000 0.00 0.00 34.64 3.21
145 146 0.322816 AGCGACAGGGCATTCACATT 60.323 50.000 0.00 0.00 34.64 2.71
146 147 0.099436 GCGACAGGGCATTCACATTC 59.901 55.000 0.00 0.00 0.00 2.67
147 148 1.452110 CGACAGGGCATTCACATTCA 58.548 50.000 0.00 0.00 0.00 2.57
148 149 1.131126 CGACAGGGCATTCACATTCAC 59.869 52.381 0.00 0.00 0.00 3.18
149 150 1.474077 GACAGGGCATTCACATTCACC 59.526 52.381 0.00 0.00 0.00 4.02
150 151 0.452987 CAGGGCATTCACATTCACCG 59.547 55.000 0.00 0.00 0.00 4.94
151 152 0.038166 AGGGCATTCACATTCACCGT 59.962 50.000 0.00 0.00 0.00 4.83
152 153 0.451783 GGGCATTCACATTCACCGTC 59.548 55.000 0.00 0.00 0.00 4.79
153 154 1.453155 GGCATTCACATTCACCGTCT 58.547 50.000 0.00 0.00 0.00 4.18
154 155 1.131126 GGCATTCACATTCACCGTCTG 59.869 52.381 0.00 0.00 0.00 3.51
155 156 1.806542 GCATTCACATTCACCGTCTGT 59.193 47.619 0.00 0.00 0.00 3.41
156 157 3.000041 GCATTCACATTCACCGTCTGTA 59.000 45.455 0.00 0.00 0.00 2.74
157 158 3.623060 GCATTCACATTCACCGTCTGTAT 59.377 43.478 0.00 0.00 0.00 2.29
158 159 4.260375 GCATTCACATTCACCGTCTGTATC 60.260 45.833 0.00 0.00 0.00 2.24
159 160 4.801330 TTCACATTCACCGTCTGTATCT 57.199 40.909 0.00 0.00 0.00 1.98
160 161 4.801330 TCACATTCACCGTCTGTATCTT 57.199 40.909 0.00 0.00 0.00 2.40
161 162 5.147330 TCACATTCACCGTCTGTATCTTT 57.853 39.130 0.00 0.00 0.00 2.52
162 163 5.547465 TCACATTCACCGTCTGTATCTTTT 58.453 37.500 0.00 0.00 0.00 2.27
163 164 5.995282 TCACATTCACCGTCTGTATCTTTTT 59.005 36.000 0.00 0.00 0.00 1.94
164 165 6.147164 TCACATTCACCGTCTGTATCTTTTTC 59.853 38.462 0.00 0.00 0.00 2.29
165 166 5.120208 ACATTCACCGTCTGTATCTTTTTCG 59.880 40.000 0.00 0.00 0.00 3.46
166 167 4.508461 TCACCGTCTGTATCTTTTTCGA 57.492 40.909 0.00 0.00 0.00 3.71
167 168 4.873817 TCACCGTCTGTATCTTTTTCGAA 58.126 39.130 0.00 0.00 0.00 3.71
168 169 5.291178 TCACCGTCTGTATCTTTTTCGAAA 58.709 37.500 6.47 6.47 0.00 3.46
169 170 5.754406 TCACCGTCTGTATCTTTTTCGAAAA 59.246 36.000 19.08 19.08 0.00 2.29
170 171 6.258287 TCACCGTCTGTATCTTTTTCGAAAAA 59.742 34.615 28.86 28.86 36.53 1.94
181 182 6.210396 CTTTTTCGAAAAAGGGTGCATTAC 57.790 37.500 38.29 0.00 46.87 1.89
182 183 4.920640 TTTCGAAAAAGGGTGCATTACA 57.079 36.364 8.44 0.00 0.00 2.41
183 184 5.520649 TTTTTCGAAAAAGGGTGCATTACAC 59.479 36.000 27.64 0.00 39.45 2.90
190 191 2.045340 GTGCATTACACCCGGCCT 60.045 61.111 0.00 0.00 44.02 5.19
191 192 2.112815 GTGCATTACACCCGGCCTC 61.113 63.158 0.00 0.00 44.02 4.70
192 193 2.297895 TGCATTACACCCGGCCTCT 61.298 57.895 0.00 0.00 0.00 3.69
193 194 1.819632 GCATTACACCCGGCCTCTG 60.820 63.158 0.00 0.00 0.00 3.35
194 195 1.819632 CATTACACCCGGCCTCTGC 60.820 63.158 0.00 0.00 0.00 4.26
195 196 2.297895 ATTACACCCGGCCTCTGCA 61.298 57.895 0.00 0.00 40.13 4.41
196 197 1.635817 ATTACACCCGGCCTCTGCAT 61.636 55.000 0.00 0.00 40.13 3.96
197 198 0.978667 TTACACCCGGCCTCTGCATA 60.979 55.000 0.00 0.00 40.13 3.14
198 199 1.399744 TACACCCGGCCTCTGCATAG 61.400 60.000 0.00 0.00 40.13 2.23
199 200 3.866582 ACCCGGCCTCTGCATAGC 61.867 66.667 0.00 0.00 40.13 2.97
200 201 3.554342 CCCGGCCTCTGCATAGCT 61.554 66.667 0.00 0.00 40.13 3.32
201 202 2.210013 CCCGGCCTCTGCATAGCTA 61.210 63.158 0.00 0.00 40.13 3.32
202 203 1.748403 CCGGCCTCTGCATAGCTAA 59.252 57.895 0.00 0.00 40.13 3.09
203 204 0.320247 CCGGCCTCTGCATAGCTAAG 60.320 60.000 0.00 0.00 40.13 2.18
204 205 0.676184 CGGCCTCTGCATAGCTAAGA 59.324 55.000 0.00 0.00 40.13 2.10
205 206 1.274728 CGGCCTCTGCATAGCTAAGAT 59.725 52.381 0.00 0.00 40.13 2.40
206 207 2.697654 GGCCTCTGCATAGCTAAGATG 58.302 52.381 0.00 0.00 40.13 2.90
214 215 3.874400 CATAGCTAAGATGCACACAGC 57.126 47.619 0.00 0.00 45.96 4.40
215 216 2.315925 TAGCTAAGATGCACACAGCC 57.684 50.000 7.57 0.00 44.83 4.85
216 217 0.325933 AGCTAAGATGCACACAGCCA 59.674 50.000 7.57 0.00 44.83 4.75
217 218 1.167851 GCTAAGATGCACACAGCCAA 58.832 50.000 0.00 0.00 44.83 4.52
218 219 1.541147 GCTAAGATGCACACAGCCAAA 59.459 47.619 0.00 0.00 44.83 3.28
219 220 2.669391 GCTAAGATGCACACAGCCAAAC 60.669 50.000 0.00 0.00 44.83 2.93
220 221 1.401761 AAGATGCACACAGCCAAACA 58.598 45.000 0.00 0.00 44.83 2.83
221 222 1.401761 AGATGCACACAGCCAAACAA 58.598 45.000 0.00 0.00 44.83 2.83
222 223 1.965643 AGATGCACACAGCCAAACAAT 59.034 42.857 0.00 0.00 44.83 2.71
223 224 3.156293 AGATGCACACAGCCAAACAATA 58.844 40.909 0.00 0.00 44.83 1.90
224 225 3.765511 AGATGCACACAGCCAAACAATAT 59.234 39.130 0.00 0.00 44.83 1.28
225 226 3.574284 TGCACACAGCCAAACAATATC 57.426 42.857 0.00 0.00 44.83 1.63
226 227 2.230992 TGCACACAGCCAAACAATATCC 59.769 45.455 0.00 0.00 44.83 2.59
227 228 2.493278 GCACACAGCCAAACAATATCCT 59.507 45.455 0.00 0.00 37.23 3.24
228 229 3.428045 GCACACAGCCAAACAATATCCTC 60.428 47.826 0.00 0.00 37.23 3.71
229 230 4.012374 CACACAGCCAAACAATATCCTCT 58.988 43.478 0.00 0.00 0.00 3.69
230 231 4.095483 CACACAGCCAAACAATATCCTCTC 59.905 45.833 0.00 0.00 0.00 3.20
231 232 4.263462 ACACAGCCAAACAATATCCTCTCA 60.263 41.667 0.00 0.00 0.00 3.27
232 233 4.885907 CACAGCCAAACAATATCCTCTCAT 59.114 41.667 0.00 0.00 0.00 2.90
233 234 5.359009 CACAGCCAAACAATATCCTCTCATT 59.641 40.000 0.00 0.00 0.00 2.57
234 235 5.591877 ACAGCCAAACAATATCCTCTCATTC 59.408 40.000 0.00 0.00 0.00 2.67
235 236 5.591472 CAGCCAAACAATATCCTCTCATTCA 59.409 40.000 0.00 0.00 0.00 2.57
236 237 6.095860 CAGCCAAACAATATCCTCTCATTCAA 59.904 38.462 0.00 0.00 0.00 2.69
237 238 6.664816 AGCCAAACAATATCCTCTCATTCAAA 59.335 34.615 0.00 0.00 0.00 2.69
238 239 7.178983 AGCCAAACAATATCCTCTCATTCAAAA 59.821 33.333 0.00 0.00 0.00 2.44
239 240 7.818930 GCCAAACAATATCCTCTCATTCAAAAA 59.181 33.333 0.00 0.00 0.00 1.94
240 241 9.143631 CCAAACAATATCCTCTCATTCAAAAAC 57.856 33.333 0.00 0.00 0.00 2.43
241 242 9.695526 CAAACAATATCCTCTCATTCAAAAACA 57.304 29.630 0.00 0.00 0.00 2.83
242 243 9.696917 AAACAATATCCTCTCATTCAAAAACAC 57.303 29.630 0.00 0.00 0.00 3.32
243 244 7.830739 ACAATATCCTCTCATTCAAAAACACC 58.169 34.615 0.00 0.00 0.00 4.16
244 245 6.683974 ATATCCTCTCATTCAAAAACACCG 57.316 37.500 0.00 0.00 0.00 4.94
260 261 4.371855 ACACCGTCTGTATCTGTATGTG 57.628 45.455 0.00 0.00 0.00 3.21
275 276 3.416955 TGTGTGACACATCGATCCG 57.583 52.632 15.39 0.00 39.62 4.18
352 358 0.253160 ACTTATGCACCCCCTCCTCA 60.253 55.000 0.00 0.00 0.00 3.86
353 359 1.143813 CTTATGCACCCCCTCCTCAT 58.856 55.000 0.00 0.00 0.00 2.90
354 360 1.072965 CTTATGCACCCCCTCCTCATC 59.927 57.143 0.00 0.00 0.00 2.92
355 361 1.121407 TATGCACCCCCTCCTCATCG 61.121 60.000 0.00 0.00 0.00 3.84
359 366 0.470833 CACCCCCTCCTCATCGAGAT 60.471 60.000 0.00 0.00 30.97 2.75
405 412 2.587473 TTGCGCGCACTCAACAGA 60.587 55.556 36.72 14.49 0.00 3.41
407 414 4.415501 GCGCGCACTCAACAGACG 62.416 66.667 29.10 0.00 0.00 4.18
415 422 2.276201 CACTCAACAGACGGTTCAACA 58.724 47.619 0.00 0.00 37.72 3.33
430 437 2.288666 TCAACAACAGAGTGCAGGTTC 58.711 47.619 0.00 0.00 0.00 3.62
441 448 2.596851 GCAGGTTCTGGGCTCCTCA 61.597 63.158 0.00 0.00 31.21 3.86
446 456 0.103937 GTTCTGGGCTCCTCATCTCG 59.896 60.000 0.00 0.00 0.00 4.04
508 519 0.938168 ACAAAACGCTCGAGACGACC 60.938 55.000 27.66 6.59 0.00 4.79
586 599 0.535102 ATGATTGATCGGCCCGTTCC 60.535 55.000 11.47 0.00 0.00 3.62
588 601 3.750373 ATTGATCGGCCCGTTCCCG 62.750 63.158 11.47 0.00 46.88 5.14
600 613 0.869730 CGTTCCCGGTCACGAAAAAT 59.130 50.000 15.77 0.00 44.60 1.82
603 616 1.515081 TCCCGGTCACGAAAAATCAC 58.485 50.000 0.00 0.00 44.60 3.06
604 617 0.519961 CCCGGTCACGAAAAATCACC 59.480 55.000 0.00 0.00 44.60 4.02
605 618 3.650183 CGGTCACGAAAAATCACCG 57.350 52.632 0.00 0.00 43.71 4.94
606 619 0.165079 CGGTCACGAAAAATCACCGG 59.835 55.000 0.00 0.00 45.12 5.28
607 620 1.515081 GGTCACGAAAAATCACCGGA 58.485 50.000 9.46 0.00 0.00 5.14
789 826 3.145551 GCCGCCGACTTCCTCCTA 61.146 66.667 0.00 0.00 0.00 2.94
799 838 5.011227 GCCGACTTCCTCCTAGAGATATTTT 59.989 44.000 0.00 0.00 0.00 1.82
851 896 4.100653 ACTCCGGCTCCTATAAAAACTACC 59.899 45.833 0.00 0.00 0.00 3.18
859 904 6.628844 GCTCCTATAAAAACTACCAAGTCGGA 60.629 42.308 0.00 0.00 38.63 4.55
886 931 1.610673 AGAAGGAAGGAGCCGCTGA 60.611 57.895 0.00 0.00 0.00 4.26
896 941 1.578206 GAGCCGCTGAACTTGAACCC 61.578 60.000 0.00 0.00 0.00 4.11
897 942 2.966309 GCCGCTGAACTTGAACCCG 61.966 63.158 0.00 0.00 0.00 5.28
898 943 1.301401 CCGCTGAACTTGAACCCGA 60.301 57.895 0.00 0.00 0.00 5.14
899 944 0.882927 CCGCTGAACTTGAACCCGAA 60.883 55.000 0.00 0.00 0.00 4.30
900 945 0.234884 CGCTGAACTTGAACCCGAAC 59.765 55.000 0.00 0.00 0.00 3.95
901 946 0.234884 GCTGAACTTGAACCCGAACG 59.765 55.000 0.00 0.00 0.00 3.95
902 947 1.578583 CTGAACTTGAACCCGAACGT 58.421 50.000 0.00 0.00 0.00 3.99
916 961 3.518419 AACGTAACCGCCCGAGCAA 62.518 57.895 0.00 0.00 39.83 3.91
917 962 3.186047 CGTAACCGCCCGAGCAAG 61.186 66.667 0.00 0.00 39.83 4.01
918 963 3.497031 GTAACCGCCCGAGCAAGC 61.497 66.667 0.00 0.00 39.83 4.01
919 964 4.010224 TAACCGCCCGAGCAAGCA 62.010 61.111 0.00 0.00 39.83 3.91
920 965 3.323758 TAACCGCCCGAGCAAGCAT 62.324 57.895 0.00 0.00 39.83 3.79
921 966 1.962321 TAACCGCCCGAGCAAGCATA 61.962 55.000 0.00 0.00 39.83 3.14
922 967 2.281070 CCGCCCGAGCAAGCATAT 60.281 61.111 0.00 0.00 39.83 1.78
957 1002 1.135731 GACGGACAGACAGAGAGCG 59.864 63.158 0.00 0.00 0.00 5.03
1064 1109 0.179140 CTCTCGCTCTTCTCAGGTGC 60.179 60.000 0.00 0.00 0.00 5.01
1083 1138 3.251509 TGCTCTGCCCTGCTTCCA 61.252 61.111 0.00 0.00 0.00 3.53
1093 1148 1.246737 CCTGCTTCCACCTTGCTTCC 61.247 60.000 0.00 0.00 0.00 3.46
1106 1164 5.698545 CACCTTGCTTCCTTCTGCTATATAC 59.301 44.000 0.00 0.00 0.00 1.47
1113 1171 6.144724 GCTTCCTTCTGCTATATACGAGTTTG 59.855 42.308 0.00 0.00 0.00 2.93
1186 1244 4.570663 CCGTCGATCAGCCGGGTC 62.571 72.222 1.27 0.00 38.09 4.46
1197 1255 2.743928 CCGGGTCAACAGCTCTGC 60.744 66.667 0.00 0.00 0.00 4.26
1198 1256 2.743928 CGGGTCAACAGCTCTGCC 60.744 66.667 0.00 0.00 0.00 4.85
1212 1270 2.829003 TGCCTACTCTCTCCGCCG 60.829 66.667 0.00 0.00 0.00 6.46
1253 1320 0.914551 CTGTCGAATTCAGTACGCGG 59.085 55.000 12.47 0.00 0.00 6.46
1262 1329 0.531090 TCAGTACGCGGTTTGTTGCT 60.531 50.000 12.47 0.00 0.00 3.91
1263 1330 0.110823 CAGTACGCGGTTTGTTGCTC 60.111 55.000 12.47 0.00 0.00 4.26
1264 1331 1.154727 GTACGCGGTTTGTTGCTCG 60.155 57.895 12.47 0.00 0.00 5.03
1265 1332 1.592131 TACGCGGTTTGTTGCTCGT 60.592 52.632 12.47 0.00 0.00 4.18
1266 1333 1.550659 TACGCGGTTTGTTGCTCGTC 61.551 55.000 12.47 0.00 0.00 4.20
1267 1334 2.594962 CGCGGTTTGTTGCTCGTCT 61.595 57.895 0.00 0.00 0.00 4.18
1268 1335 1.279527 CGCGGTTTGTTGCTCGTCTA 61.280 55.000 0.00 0.00 0.00 2.59
1269 1336 0.438830 GCGGTTTGTTGCTCGTCTAG 59.561 55.000 0.00 0.00 0.00 2.43
1280 1347 1.202054 GCTCGTCTAGTCGTCTTCCAC 60.202 57.143 9.17 0.00 0.00 4.02
1286 1353 0.406750 TAGTCGTCTTCCACCTCCCA 59.593 55.000 0.00 0.00 0.00 4.37
1287 1354 0.471211 AGTCGTCTTCCACCTCCCAA 60.471 55.000 0.00 0.00 0.00 4.12
1306 1373 0.108329 ATCCGTAGTGCCGTTTCCAG 60.108 55.000 0.00 0.00 0.00 3.86
1310 1377 1.019805 GTAGTGCCGTTTCCAGGAGC 61.020 60.000 0.00 0.00 0.00 4.70
1311 1378 1.476845 TAGTGCCGTTTCCAGGAGCA 61.477 55.000 0.00 0.00 0.00 4.26
1312 1379 1.896660 GTGCCGTTTCCAGGAGCAA 60.897 57.895 2.71 0.00 34.79 3.91
1314 1381 2.626780 GCCGTTTCCAGGAGCAACC 61.627 63.158 0.00 0.00 39.35 3.77
1316 1383 1.301401 CGTTTCCAGGAGCAACCGA 60.301 57.895 0.00 0.00 44.74 4.69
1318 1385 0.034896 GTTTCCAGGAGCAACCGAGA 59.965 55.000 0.00 0.00 44.74 4.04
1434 1521 7.884816 TTCATTAGTTTACCTTCTCTGAACG 57.115 36.000 0.00 0.00 0.00 3.95
1445 1532 3.179443 TCTCTGAACGCATTGGTATCC 57.821 47.619 0.00 0.00 0.00 2.59
1447 1534 0.937304 CTGAACGCATTGGTATCCGG 59.063 55.000 0.00 0.00 0.00 5.14
1448 1535 0.250793 TGAACGCATTGGTATCCGGT 59.749 50.000 0.00 0.00 0.00 5.28
1450 1537 0.746563 AACGCATTGGTATCCGGTGG 60.747 55.000 0.00 0.00 0.00 4.61
1453 1540 1.270625 CGCATTGGTATCCGGTGGTAT 60.271 52.381 0.00 0.00 0.00 2.73
1454 1541 2.808933 CGCATTGGTATCCGGTGGTATT 60.809 50.000 0.00 0.00 0.00 1.89
1455 1542 3.219281 GCATTGGTATCCGGTGGTATTT 58.781 45.455 0.00 0.00 0.00 1.40
1456 1543 3.004315 GCATTGGTATCCGGTGGTATTTG 59.996 47.826 0.00 0.00 0.00 2.32
1457 1544 3.284793 TTGGTATCCGGTGGTATTTGG 57.715 47.619 0.00 0.00 0.00 3.28
1515 1624 2.762043 AGGGAAGGAGCCGCTCTC 60.762 66.667 19.68 10.35 41.15 3.20
1516 1625 2.762043 GGGAAGGAGCCGCTCTCT 60.762 66.667 19.68 12.15 41.60 3.10
1517 1626 1.455959 GGGAAGGAGCCGCTCTCTA 60.456 63.158 19.68 0.00 41.60 2.43
1518 1627 1.737201 GGAAGGAGCCGCTCTCTAC 59.263 63.158 19.68 4.68 41.60 2.59
1520 1629 1.107945 GAAGGAGCCGCTCTCTACTT 58.892 55.000 19.68 13.74 41.60 2.24
1521 1630 1.478916 GAAGGAGCCGCTCTCTACTTT 59.521 52.381 19.68 5.63 41.60 2.66
1522 1631 2.438800 AGGAGCCGCTCTCTACTTTA 57.561 50.000 19.68 0.00 41.60 1.85
1523 1632 2.025898 AGGAGCCGCTCTCTACTTTAC 58.974 52.381 19.68 0.13 41.60 2.01
1524 1633 1.067364 GGAGCCGCTCTCTACTTTACC 59.933 57.143 19.68 0.00 41.60 2.85
1527 1636 2.094130 AGCCGCTCTCTACTTTACCAAC 60.094 50.000 0.00 0.00 0.00 3.77
1546 1655 2.259204 CGAACGTAACCGCCCAGA 59.741 61.111 0.00 0.00 37.70 3.86
1547 1656 1.804326 CGAACGTAACCGCCCAGAG 60.804 63.158 0.00 0.00 37.70 3.35
1548 1657 1.447314 GAACGTAACCGCCCAGAGG 60.447 63.158 0.00 0.00 37.70 3.69
1566 1681 2.839228 AGGCCCAGACCTCATATATCC 58.161 52.381 0.00 0.00 33.62 2.59
1570 1685 1.135139 CCAGACCTCATATATCCGCCG 59.865 57.143 0.00 0.00 0.00 6.46
1616 1738 1.062002 GAGAGCAGAGAACGAGACGAG 59.938 57.143 0.00 0.00 0.00 4.18
1634 1756 3.017323 CAATGGAGCATCGCGTCC 58.983 61.111 5.77 6.22 34.37 4.79
1643 1765 4.925576 ATCGCGTCCCATCGTCGC 62.926 66.667 5.77 0.00 45.28 5.19
1663 1788 2.192443 CTCCTGCCCTGCATCCTG 59.808 66.667 0.00 0.00 38.13 3.86
1700 1825 0.250209 CTCAGGTGTGTGCTCTGCTT 60.250 55.000 0.00 0.00 0.00 3.91
1703 1828 1.072159 GGTGTGTGCTCTGCTTCCT 59.928 57.895 0.00 0.00 0.00 3.36
1721 1851 1.065564 CCTCCTCCTTGCTTCCTTCTG 60.066 57.143 0.00 0.00 0.00 3.02
1722 1852 0.326264 TCCTCCTTGCTTCCTTCTGC 59.674 55.000 0.00 0.00 0.00 4.26
1723 1853 0.327591 CCTCCTTGCTTCCTTCTGCT 59.672 55.000 0.00 0.00 0.00 4.24
1724 1854 1.678425 CCTCCTTGCTTCCTTCTGCTC 60.678 57.143 0.00 0.00 0.00 4.26
1725 1855 1.278699 CTCCTTGCTTCCTTCTGCTCT 59.721 52.381 0.00 0.00 0.00 4.09
1726 1856 1.701847 TCCTTGCTTCCTTCTGCTCTT 59.298 47.619 0.00 0.00 0.00 2.85
1727 1857 1.811359 CCTTGCTTCCTTCTGCTCTTG 59.189 52.381 0.00 0.00 0.00 3.02
1728 1858 2.551721 CCTTGCTTCCTTCTGCTCTTGA 60.552 50.000 0.00 0.00 0.00 3.02
1729 1859 2.469274 TGCTTCCTTCTGCTCTTGAG 57.531 50.000 0.00 0.00 0.00 3.02
1730 1860 1.085893 GCTTCCTTCTGCTCTTGAGC 58.914 55.000 15.01 15.01 0.00 4.26
1731 1861 1.338960 GCTTCCTTCTGCTCTTGAGCT 60.339 52.381 21.17 0.00 35.49 4.09
1732 1862 2.875267 GCTTCCTTCTGCTCTTGAGCTT 60.875 50.000 21.17 0.00 35.49 3.74
1733 1863 3.410508 CTTCCTTCTGCTCTTGAGCTTT 58.589 45.455 21.17 0.00 35.49 3.51
1734 1864 3.498774 TCCTTCTGCTCTTGAGCTTTT 57.501 42.857 21.17 0.00 35.49 2.27
1735 1865 3.406764 TCCTTCTGCTCTTGAGCTTTTC 58.593 45.455 21.17 0.00 35.49 2.29
1736 1866 3.072184 TCCTTCTGCTCTTGAGCTTTTCT 59.928 43.478 21.17 0.00 35.49 2.52
1749 1879 5.368145 TGAGCTTTTCTCTTCTTGCTTGTA 58.632 37.500 0.00 0.00 42.38 2.41
1751 1881 4.517075 AGCTTTTCTCTTCTTGCTTGTACC 59.483 41.667 0.00 0.00 0.00 3.34
1752 1882 4.320567 GCTTTTCTCTTCTTGCTTGTACCC 60.321 45.833 0.00 0.00 0.00 3.69
1753 1883 4.706842 TTTCTCTTCTTGCTTGTACCCT 57.293 40.909 0.00 0.00 0.00 4.34
1754 1884 4.706842 TTCTCTTCTTGCTTGTACCCTT 57.293 40.909 0.00 0.00 0.00 3.95
1829 1974 2.510012 TGCGCTTCTGCCATCTCG 60.510 61.111 9.73 0.00 35.36 4.04
1834 1979 1.424493 GCTTCTGCCATCTCGAACGG 61.424 60.000 0.00 0.00 0.00 4.44
1841 1986 1.375396 CATCTCGAACGGTTGCCCA 60.375 57.895 0.00 0.00 0.00 5.36
1852 1997 2.158813 ACGGTTGCCCATCGAATTCTAT 60.159 45.455 3.52 0.00 0.00 1.98
1853 1998 2.224079 CGGTTGCCCATCGAATTCTATG 59.776 50.000 11.97 11.97 0.00 2.23
1866 2011 3.680642 ATTCTATGCACGATGTGTTGC 57.319 42.857 0.00 0.00 35.75 4.17
1869 2014 1.328680 CTATGCACGATGTGTTGCTCC 59.671 52.381 0.00 0.00 35.75 4.70
1873 2025 1.672356 ACGATGTGTTGCTCCTGCC 60.672 57.895 0.00 0.00 38.71 4.85
1877 2029 2.203480 GTGTTGCTCCTGCCCCAA 60.203 61.111 0.00 0.00 38.71 4.12
1878 2030 2.203480 TGTTGCTCCTGCCCCAAC 60.203 61.111 0.00 0.00 39.32 3.77
1880 2032 4.659172 TTGCTCCTGCCCCAACCG 62.659 66.667 0.00 0.00 38.71 4.44
1883 2035 3.006728 CTCCTGCCCCAACCGGTA 61.007 66.667 8.00 0.00 0.00 4.02
1906 2059 2.224523 TGCCGTCTCCAAGAGTTTCAAT 60.225 45.455 0.00 0.00 0.00 2.57
1908 2061 3.664107 CCGTCTCCAAGAGTTTCAATCA 58.336 45.455 0.00 0.00 0.00 2.57
1909 2062 4.065088 CCGTCTCCAAGAGTTTCAATCAA 58.935 43.478 0.00 0.00 0.00 2.57
1910 2063 4.153117 CCGTCTCCAAGAGTTTCAATCAAG 59.847 45.833 0.00 0.00 0.00 3.02
1911 2064 4.991056 CGTCTCCAAGAGTTTCAATCAAGA 59.009 41.667 0.00 0.00 0.00 3.02
1923 2076 4.472691 TCAATCAAGACTGTTTTCGCTG 57.527 40.909 0.00 0.00 0.00 5.18
1929 2082 4.274705 TCAAGACTGTTTTCGCTGCAATTA 59.725 37.500 0.00 0.00 0.00 1.40
1948 2101 4.966787 GGGGCTGTGCGGTTCCAA 62.967 66.667 0.00 0.00 0.00 3.53
1949 2102 3.365265 GGGCTGTGCGGTTCCAAG 61.365 66.667 0.00 0.00 0.00 3.61
1951 2104 2.328099 GGCTGTGCGGTTCCAAGAG 61.328 63.158 0.00 0.00 0.00 2.85
1952 2105 2.970974 GCTGTGCGGTTCCAAGAGC 61.971 63.158 0.00 0.00 0.00 4.09
1953 2106 2.281484 TGTGCGGTTCCAAGAGCC 60.281 61.111 0.00 0.00 0.00 4.70
1954 2107 2.032681 GTGCGGTTCCAAGAGCCT 59.967 61.111 0.00 0.00 30.56 4.58
1956 2109 2.032681 GCGGTTCCAAGAGCCTGT 59.967 61.111 0.00 0.00 30.56 4.00
1957 2110 1.600916 GCGGTTCCAAGAGCCTGTT 60.601 57.895 0.00 0.00 30.56 3.16
1958 2111 1.578206 GCGGTTCCAAGAGCCTGTTC 61.578 60.000 0.00 0.00 30.56 3.18
1966 2128 0.533032 AAGAGCCTGTTCGAGCTACC 59.467 55.000 0.00 0.00 40.11 3.18
1967 2129 0.612174 AGAGCCTGTTCGAGCTACCA 60.612 55.000 0.00 0.00 40.11 3.25
1981 2143 3.927552 GCTACCATCAAGCTACGAAAC 57.072 47.619 0.00 0.00 37.01 2.78
2004 2171 1.894466 AGCATGGAGATCTCAGATCCG 59.106 52.381 23.85 7.16 35.78 4.18
2006 2173 2.246469 CATGGAGATCTCAGATCCGGT 58.754 52.381 23.85 0.00 35.78 5.28
2008 2175 0.965439 GGAGATCTCAGATCCGGTGG 59.035 60.000 23.85 0.00 0.00 4.61
2009 2176 1.479573 GGAGATCTCAGATCCGGTGGA 60.480 57.143 23.85 0.00 35.55 4.02
2015 2182 3.461773 AGATCCGGTGGACCTGCG 61.462 66.667 0.00 0.00 32.98 5.18
2017 2184 3.718210 GATCCGGTGGACCTGCGTC 62.718 68.421 0.00 0.00 38.38 5.19
2028 2196 0.320771 ACCTGCGTCGAATTGCTCTT 60.321 50.000 0.00 0.00 0.00 2.85
2032 2200 0.095417 GCGTCGAATTGCTCTTCCAC 59.905 55.000 0.00 0.00 0.00 4.02
2117 2289 0.654683 GCGCATGTGAGACCATCTTC 59.345 55.000 11.26 0.00 0.00 2.87
2230 2411 3.176924 TCACCCTTCTTCTCTGCTACT 57.823 47.619 0.00 0.00 0.00 2.57
2232 2413 4.017808 TCACCCTTCTTCTCTGCTACTAC 58.982 47.826 0.00 0.00 0.00 2.73
2233 2414 4.020543 CACCCTTCTTCTCTGCTACTACT 58.979 47.826 0.00 0.00 0.00 2.57
2234 2415 4.464597 CACCCTTCTTCTCTGCTACTACTT 59.535 45.833 0.00 0.00 0.00 2.24
2235 2416 4.464597 ACCCTTCTTCTCTGCTACTACTTG 59.535 45.833 0.00 0.00 0.00 3.16
2236 2417 4.429108 CCTTCTTCTCTGCTACTACTTGC 58.571 47.826 0.00 0.00 0.00 4.01
2237 2418 3.766676 TCTTCTCTGCTACTACTTGCG 57.233 47.619 0.00 0.00 0.00 4.85
2238 2419 3.344515 TCTTCTCTGCTACTACTTGCGA 58.655 45.455 0.00 0.00 0.00 5.10
2239 2420 3.375610 TCTTCTCTGCTACTACTTGCGAG 59.624 47.826 0.00 0.00 34.09 5.03
2240 2421 2.712709 TCTCTGCTACTACTTGCGAGT 58.287 47.619 12.27 12.27 39.97 4.18
2241 2422 3.870274 TCTCTGCTACTACTTGCGAGTA 58.130 45.455 13.31 13.31 37.33 2.59
2248 2429 5.529800 TGCTACTACTTGCGAGTATATGTCA 59.470 40.000 14.33 6.68 37.71 3.58
2281 2462 1.269051 CGCAACTGCATGCATCATCAT 60.269 47.619 22.97 0.95 46.76 2.45
2318 2499 7.762588 TGGAGTATAGTAGGCTGTCTATTTC 57.237 40.000 15.48 13.49 0.00 2.17
2348 2530 2.132740 TTTTGTGCAAGTTGATCGCC 57.867 45.000 7.16 0.00 0.00 5.54
2457 2640 7.962918 CGAAGAAGATATTTTCGAAACAATGGT 59.037 33.333 10.79 0.00 44.64 3.55
2582 2765 4.280019 AACAACCTGCCGGACCCC 62.280 66.667 5.05 0.00 0.00 4.95
2840 3029 2.631428 CTGGGCAACAACGACACG 59.369 61.111 0.00 0.00 39.74 4.49
3068 3257 1.216977 CCTCATCAACGCGTACCCA 59.783 57.895 14.46 0.00 0.00 4.51
3470 3665 1.078637 GTTCTACCCCAACGGCTCC 60.079 63.158 0.00 0.00 33.26 4.70
3586 3799 4.778143 GGCCGCGTCCAGATTGGT 62.778 66.667 0.00 0.00 39.03 3.67
3587 3800 3.499737 GCCGCGTCCAGATTGGTG 61.500 66.667 4.92 0.00 39.03 4.17
3588 3801 2.819595 CCGCGTCCAGATTGGTGG 60.820 66.667 4.92 0.00 39.03 4.61
3672 3885 5.412640 TGTTGGCATGCTGATTGATTAAAG 58.587 37.500 18.92 0.00 0.00 1.85
3791 4005 2.567985 TGTCTGTCCCGGAAAGTTTTC 58.432 47.619 0.73 0.00 36.46 2.29
3823 4037 0.036164 TATTCCCGCCCCAATGATCG 59.964 55.000 0.00 0.00 0.00 3.69
3824 4038 1.705002 ATTCCCGCCCCAATGATCGA 61.705 55.000 0.00 0.00 0.00 3.59
3825 4039 1.705002 TTCCCGCCCCAATGATCGAT 61.705 55.000 0.00 0.00 0.00 3.59
3826 4040 1.672356 CCCGCCCCAATGATCGATC 60.672 63.158 18.72 18.72 0.00 3.69
3864 4078 0.393537 GGCCTGTGAAGATGTGGAGG 60.394 60.000 0.00 0.00 0.00 4.30
3867 4081 1.446907 CTGTGAAGATGTGGAGGCAC 58.553 55.000 0.00 0.00 0.00 5.01
3955 4179 2.568956 TGACTGGAGAAACATGCTAGCT 59.431 45.455 17.23 0.00 0.00 3.32
3956 4180 2.935201 GACTGGAGAAACATGCTAGCTG 59.065 50.000 17.23 13.70 0.00 4.24
3958 4182 3.515502 ACTGGAGAAACATGCTAGCTGTA 59.484 43.478 17.23 0.00 0.00 2.74
3959 4183 4.118410 CTGGAGAAACATGCTAGCTGTAG 58.882 47.826 17.23 7.10 0.00 2.74
3960 4184 3.515502 TGGAGAAACATGCTAGCTGTAGT 59.484 43.478 17.23 9.18 0.00 2.73
3961 4185 4.709886 TGGAGAAACATGCTAGCTGTAGTA 59.290 41.667 17.23 0.00 0.00 1.82
3962 4186 5.163509 TGGAGAAACATGCTAGCTGTAGTAG 60.164 44.000 17.23 0.57 0.00 2.57
4103 4327 0.592637 TGAATGAACTTGCACGCCTG 59.407 50.000 0.00 0.00 0.00 4.85
4120 4353 2.094338 GCCTGATCTTGGGCTTTTTCTG 60.094 50.000 14.54 0.00 44.48 3.02
4125 4358 0.039165 CTTGGGCTTTTTCTGCGGTC 60.039 55.000 0.00 0.00 0.00 4.79
4182 4418 1.891919 TGCTCGCCGCATTATTCCC 60.892 57.895 0.00 0.00 45.47 3.97
4214 4450 2.031465 CACGTACCACCACCACCC 59.969 66.667 0.00 0.00 0.00 4.61
4278 4521 1.016653 GCGAAGAGCCTGAGTTGTCC 61.017 60.000 0.00 0.00 40.81 4.02
4289 4534 0.977395 GAGTTGTCCTGGCCACTAGT 59.023 55.000 0.00 0.00 0.00 2.57
4306 4551 5.359292 CCACTAGTTCATCATCAGACTCAGA 59.641 44.000 0.00 0.00 0.00 3.27
4307 4552 6.040729 CCACTAGTTCATCATCAGACTCAGAT 59.959 42.308 0.00 0.00 0.00 2.90
4308 4553 7.140705 CACTAGTTCATCATCAGACTCAGATC 58.859 42.308 0.00 0.00 0.00 2.75
4309 4554 5.185668 AGTTCATCATCAGACTCAGATCG 57.814 43.478 0.00 0.00 0.00 3.69
4345 4590 4.351874 TTTCCCTGACAAAGAGGTACAG 57.648 45.455 0.00 0.00 0.00 2.74
4434 4686 1.223187 GAGAAAGTGGCCGAACGAAA 58.777 50.000 0.00 0.00 0.00 3.46
4435 4687 1.194772 GAGAAAGTGGCCGAACGAAAG 59.805 52.381 0.00 0.00 0.00 2.62
4436 4688 0.237498 GAAAGTGGCCGAACGAAAGG 59.763 55.000 0.00 0.00 0.00 3.11
4437 4689 0.179040 AAAGTGGCCGAACGAAAGGA 60.179 50.000 0.00 0.00 0.00 3.36
4438 4690 0.179040 AAGTGGCCGAACGAAAGGAA 60.179 50.000 0.00 0.00 0.00 3.36
4439 4691 0.602905 AGTGGCCGAACGAAAGGAAG 60.603 55.000 0.00 0.00 0.00 3.46
4440 4692 0.883370 GTGGCCGAACGAAAGGAAGT 60.883 55.000 0.00 0.00 0.00 3.01
4441 4693 0.179040 TGGCCGAACGAAAGGAAGTT 60.179 50.000 0.00 0.00 0.00 2.66
4442 4694 0.516001 GGCCGAACGAAAGGAAGTTC 59.484 55.000 0.00 0.00 42.23 3.01
4443 4695 0.516001 GCCGAACGAAAGGAAGTTCC 59.484 55.000 14.54 14.54 42.57 3.62
4444 4696 0.788391 CCGAACGAAAGGAAGTTCCG 59.212 55.000 16.31 6.96 42.75 4.30
4445 4697 0.788391 CGAACGAAAGGAAGTTCCGG 59.212 55.000 16.31 9.55 42.75 5.14
4446 4698 1.603678 CGAACGAAAGGAAGTTCCGGA 60.604 52.381 16.31 0.00 42.75 5.14
4447 4699 1.797046 GAACGAAAGGAAGTTCCGGAC 59.203 52.381 16.31 10.09 42.75 4.79
4448 4700 0.319297 ACGAAAGGAAGTTCCGGACG 60.319 55.000 24.48 24.48 42.75 4.79
4449 4701 0.038892 CGAAAGGAAGTTCCGGACGA 60.039 55.000 22.99 0.00 42.75 4.20
4450 4702 1.603678 CGAAAGGAAGTTCCGGACGAA 60.604 52.381 22.99 0.00 42.75 3.85
4528 4780 4.683334 GGTCACGCAACGCAAGCC 62.683 66.667 0.00 0.00 45.62 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.084039 CCGGCATCTTGGTGCATATATT 58.916 45.455 8.19 0.00 46.81 1.28
1 2 2.618816 CCCGGCATCTTGGTGCATATAT 60.619 50.000 8.19 0.00 46.81 0.86
5 6 2.440796 CCCGGCATCTTGGTGCAT 60.441 61.111 8.19 0.00 46.81 3.96
6 7 4.738998 CCCCGGCATCTTGGTGCA 62.739 66.667 8.19 0.00 46.81 4.57
18 19 1.977009 GAAAGAAGGTTGCCCCCGG 60.977 63.158 0.00 0.00 0.00 5.73
19 20 1.074951 AGAAAGAAGGTTGCCCCCG 59.925 57.895 0.00 0.00 0.00 5.73
20 21 0.112412 TCAGAAAGAAGGTTGCCCCC 59.888 55.000 0.00 0.00 0.00 5.40
21 22 1.073923 TCTCAGAAAGAAGGTTGCCCC 59.926 52.381 0.00 0.00 0.00 5.80
22 23 2.568623 TCTCAGAAAGAAGGTTGCCC 57.431 50.000 0.00 0.00 0.00 5.36
23 24 3.254411 CCTTTCTCAGAAAGAAGGTTGCC 59.746 47.826 26.19 0.00 44.69 4.52
24 25 4.137543 TCCTTTCTCAGAAAGAAGGTTGC 58.862 43.478 26.19 0.00 44.69 4.17
25 26 4.759183 CCTCCTTTCTCAGAAAGAAGGTTG 59.241 45.833 26.19 10.07 44.69 3.77
26 27 4.413851 ACCTCCTTTCTCAGAAAGAAGGTT 59.586 41.667 28.01 14.88 44.69 3.50
27 28 3.977326 ACCTCCTTTCTCAGAAAGAAGGT 59.023 43.478 28.01 28.01 44.69 3.50
28 29 4.574892 GACCTCCTTTCTCAGAAAGAAGG 58.425 47.826 26.73 26.73 44.69 3.46
29 30 4.021894 TCGACCTCCTTTCTCAGAAAGAAG 60.022 45.833 26.19 16.94 44.69 2.85
30 31 3.895656 TCGACCTCCTTTCTCAGAAAGAA 59.104 43.478 26.19 7.36 42.35 2.52
31 32 3.497332 TCGACCTCCTTTCTCAGAAAGA 58.503 45.455 26.19 12.53 0.00 2.52
32 33 3.944055 TCGACCTCCTTTCTCAGAAAG 57.056 47.619 18.99 18.99 0.00 2.62
33 34 4.618460 CGAATCGACCTCCTTTCTCAGAAA 60.618 45.833 0.00 0.00 0.00 2.52
34 35 3.119459 CGAATCGACCTCCTTTCTCAGAA 60.119 47.826 0.00 0.00 0.00 3.02
35 36 2.423892 CGAATCGACCTCCTTTCTCAGA 59.576 50.000 0.00 0.00 0.00 3.27
36 37 2.164624 ACGAATCGACCTCCTTTCTCAG 59.835 50.000 10.55 0.00 0.00 3.35
37 38 2.094700 CACGAATCGACCTCCTTTCTCA 60.095 50.000 10.55 0.00 0.00 3.27
38 39 2.531206 CACGAATCGACCTCCTTTCTC 58.469 52.381 10.55 0.00 0.00 2.87
39 40 1.404315 GCACGAATCGACCTCCTTTCT 60.404 52.381 10.55 0.00 0.00 2.52
40 41 1.000145 GCACGAATCGACCTCCTTTC 59.000 55.000 10.55 0.00 0.00 2.62
41 42 0.736325 CGCACGAATCGACCTCCTTT 60.736 55.000 10.55 0.00 0.00 3.11
42 43 1.153823 CGCACGAATCGACCTCCTT 60.154 57.895 10.55 0.00 0.00 3.36
43 44 1.592400 TTCGCACGAATCGACCTCCT 61.592 55.000 10.55 0.00 35.51 3.69
44 45 1.140407 CTTCGCACGAATCGACCTCC 61.140 60.000 10.55 0.00 35.51 4.30
45 46 0.456312 ACTTCGCACGAATCGACCTC 60.456 55.000 10.55 0.00 35.51 3.85
46 47 0.732880 CACTTCGCACGAATCGACCT 60.733 55.000 10.55 0.00 35.51 3.85
47 48 0.731514 TCACTTCGCACGAATCGACC 60.732 55.000 10.55 0.00 35.51 4.79
48 49 1.269166 ATCACTTCGCACGAATCGAC 58.731 50.000 10.55 0.00 35.51 4.20
49 50 1.990799 AATCACTTCGCACGAATCGA 58.009 45.000 10.55 6.37 33.28 3.59
50 51 2.345641 AGAAATCACTTCGCACGAATCG 59.654 45.455 5.87 0.00 39.22 3.34
51 52 3.540359 CGAGAAATCACTTCGCACGAATC 60.540 47.826 5.87 0.10 39.22 2.52
52 53 2.345641 CGAGAAATCACTTCGCACGAAT 59.654 45.455 5.87 0.00 39.22 3.34
53 54 1.719246 CGAGAAATCACTTCGCACGAA 59.281 47.619 5.26 5.26 39.22 3.85
54 55 1.335597 ACGAGAAATCACTTCGCACGA 60.336 47.619 0.00 0.00 39.22 4.35
55 56 1.060713 ACGAGAAATCACTTCGCACG 58.939 50.000 0.00 0.00 39.22 5.34
56 57 1.462541 GCACGAGAAATCACTTCGCAC 60.463 52.381 0.00 0.00 39.22 5.34
57 58 0.790207 GCACGAGAAATCACTTCGCA 59.210 50.000 0.00 0.00 39.22 5.10
58 59 0.790207 TGCACGAGAAATCACTTCGC 59.210 50.000 0.00 0.00 39.22 4.70
59 60 2.029728 GGATGCACGAGAAATCACTTCG 59.970 50.000 0.00 0.00 39.22 3.79
60 61 2.029728 CGGATGCACGAGAAATCACTTC 59.970 50.000 0.00 0.00 35.47 3.01
61 62 2.002586 CGGATGCACGAGAAATCACTT 58.997 47.619 0.00 0.00 35.47 3.16
62 63 1.204704 TCGGATGCACGAGAAATCACT 59.795 47.619 0.00 0.00 38.06 3.41
63 64 1.640428 TCGGATGCACGAGAAATCAC 58.360 50.000 0.00 0.00 38.06 3.06
64 65 2.378445 TTCGGATGCACGAGAAATCA 57.622 45.000 0.00 0.00 44.47 2.57
65 66 3.370978 TCTTTTCGGATGCACGAGAAATC 59.629 43.478 11.45 0.00 44.47 2.17
66 67 3.125316 GTCTTTTCGGATGCACGAGAAAT 59.875 43.478 11.45 0.00 44.47 2.17
67 68 2.478894 GTCTTTTCGGATGCACGAGAAA 59.521 45.455 7.84 7.84 44.47 2.52
68 69 2.066262 GTCTTTTCGGATGCACGAGAA 58.934 47.619 0.00 0.00 44.47 2.87
69 70 1.000394 TGTCTTTTCGGATGCACGAGA 60.000 47.619 0.00 0.00 44.47 4.04
70 71 1.428448 TGTCTTTTCGGATGCACGAG 58.572 50.000 0.00 0.00 44.47 4.18
71 72 1.872388 TTGTCTTTTCGGATGCACGA 58.128 45.000 0.00 0.00 41.76 4.35
72 73 2.574322 CTTTGTCTTTTCGGATGCACG 58.426 47.619 0.00 0.00 0.00 5.34
73 74 2.030805 AGCTTTGTCTTTTCGGATGCAC 60.031 45.455 0.00 0.00 0.00 4.57
74 75 2.229792 AGCTTTGTCTTTTCGGATGCA 58.770 42.857 0.00 0.00 0.00 3.96
75 76 2.997485 AGCTTTGTCTTTTCGGATGC 57.003 45.000 0.00 0.00 0.00 3.91
76 77 3.686726 AGCTAGCTTTGTCTTTTCGGATG 59.313 43.478 12.68 0.00 0.00 3.51
77 78 3.686726 CAGCTAGCTTTGTCTTTTCGGAT 59.313 43.478 16.46 0.00 0.00 4.18
78 79 3.067106 CAGCTAGCTTTGTCTTTTCGGA 58.933 45.455 16.46 0.00 0.00 4.55
79 80 2.808543 ACAGCTAGCTTTGTCTTTTCGG 59.191 45.455 16.46 1.26 0.00 4.30
80 81 5.591643 TTACAGCTAGCTTTGTCTTTTCG 57.408 39.130 16.46 1.84 0.00 3.46
84 85 9.110502 GGTATTATTTACAGCTAGCTTTGTCTT 57.889 33.333 16.46 1.23 0.00 3.01
85 86 8.265055 TGGTATTATTTACAGCTAGCTTTGTCT 58.735 33.333 16.46 2.74 0.00 3.41
86 87 8.433421 TGGTATTATTTACAGCTAGCTTTGTC 57.567 34.615 16.46 0.00 0.00 3.18
87 88 8.047310 ACTGGTATTATTTACAGCTAGCTTTGT 58.953 33.333 16.46 14.68 34.40 2.83
88 89 8.438676 ACTGGTATTATTTACAGCTAGCTTTG 57.561 34.615 16.46 8.63 34.40 2.77
89 90 9.765795 CTACTGGTATTATTTACAGCTAGCTTT 57.234 33.333 16.46 12.24 34.40 3.51
90 91 8.925338 ACTACTGGTATTATTTACAGCTAGCTT 58.075 33.333 16.46 9.48 34.40 3.74
91 92 8.480133 ACTACTGGTATTATTTACAGCTAGCT 57.520 34.615 12.68 12.68 34.40 3.32
103 104 8.569641 CGCTTCTCTCTTAACTACTGGTATTAT 58.430 37.037 0.00 0.00 0.00 1.28
104 105 7.772292 TCGCTTCTCTCTTAACTACTGGTATTA 59.228 37.037 0.00 0.00 0.00 0.98
105 106 6.602406 TCGCTTCTCTCTTAACTACTGGTATT 59.398 38.462 0.00 0.00 0.00 1.89
106 107 6.038492 GTCGCTTCTCTCTTAACTACTGGTAT 59.962 42.308 0.00 0.00 0.00 2.73
107 108 5.353678 GTCGCTTCTCTCTTAACTACTGGTA 59.646 44.000 0.00 0.00 0.00 3.25
108 109 4.156373 GTCGCTTCTCTCTTAACTACTGGT 59.844 45.833 0.00 0.00 0.00 4.00
109 110 4.156190 TGTCGCTTCTCTCTTAACTACTGG 59.844 45.833 0.00 0.00 0.00 4.00
110 111 5.298197 TGTCGCTTCTCTCTTAACTACTG 57.702 43.478 0.00 0.00 0.00 2.74
111 112 4.396790 CCTGTCGCTTCTCTCTTAACTACT 59.603 45.833 0.00 0.00 0.00 2.57
112 113 4.439016 CCCTGTCGCTTCTCTCTTAACTAC 60.439 50.000 0.00 0.00 0.00 2.73
113 114 3.695060 CCCTGTCGCTTCTCTCTTAACTA 59.305 47.826 0.00 0.00 0.00 2.24
114 115 2.494073 CCCTGTCGCTTCTCTCTTAACT 59.506 50.000 0.00 0.00 0.00 2.24
115 116 2.882324 CCCTGTCGCTTCTCTCTTAAC 58.118 52.381 0.00 0.00 0.00 2.01
116 117 1.204941 GCCCTGTCGCTTCTCTCTTAA 59.795 52.381 0.00 0.00 0.00 1.85
117 118 0.818296 GCCCTGTCGCTTCTCTCTTA 59.182 55.000 0.00 0.00 0.00 2.10
118 119 1.188219 TGCCCTGTCGCTTCTCTCTT 61.188 55.000 0.00 0.00 0.00 2.85
119 120 0.975040 ATGCCCTGTCGCTTCTCTCT 60.975 55.000 0.00 0.00 0.00 3.10
120 121 0.107945 AATGCCCTGTCGCTTCTCTC 60.108 55.000 0.00 0.00 0.00 3.20
121 122 0.107945 GAATGCCCTGTCGCTTCTCT 60.108 55.000 0.00 0.00 0.00 3.10
122 123 0.391661 TGAATGCCCTGTCGCTTCTC 60.392 55.000 0.00 0.00 0.00 2.87
123 124 0.674895 GTGAATGCCCTGTCGCTTCT 60.675 55.000 0.00 0.00 0.00 2.85
124 125 0.955428 TGTGAATGCCCTGTCGCTTC 60.955 55.000 0.00 0.00 0.00 3.86
125 126 0.322816 ATGTGAATGCCCTGTCGCTT 60.323 50.000 0.00 0.00 0.00 4.68
126 127 0.322816 AATGTGAATGCCCTGTCGCT 60.323 50.000 0.00 0.00 0.00 4.93
127 128 0.099436 GAATGTGAATGCCCTGTCGC 59.901 55.000 0.00 0.00 0.00 5.19
128 129 1.131126 GTGAATGTGAATGCCCTGTCG 59.869 52.381 0.00 0.00 0.00 4.35
129 130 1.474077 GGTGAATGTGAATGCCCTGTC 59.526 52.381 0.00 0.00 0.00 3.51
130 131 1.549203 GGTGAATGTGAATGCCCTGT 58.451 50.000 0.00 0.00 0.00 4.00
131 132 0.452987 CGGTGAATGTGAATGCCCTG 59.547 55.000 0.00 0.00 0.00 4.45
132 133 0.038166 ACGGTGAATGTGAATGCCCT 59.962 50.000 0.00 0.00 0.00 5.19
133 134 0.451783 GACGGTGAATGTGAATGCCC 59.548 55.000 0.00 0.00 0.00 5.36
134 135 1.131126 CAGACGGTGAATGTGAATGCC 59.869 52.381 0.00 0.00 0.00 4.40
135 136 1.806542 ACAGACGGTGAATGTGAATGC 59.193 47.619 0.00 0.00 0.00 3.56
136 137 5.111989 AGATACAGACGGTGAATGTGAATG 58.888 41.667 0.00 0.00 0.00 2.67
137 138 5.344743 AGATACAGACGGTGAATGTGAAT 57.655 39.130 0.00 0.00 0.00 2.57
138 139 4.801330 AGATACAGACGGTGAATGTGAA 57.199 40.909 0.00 0.00 0.00 3.18
139 140 4.801330 AAGATACAGACGGTGAATGTGA 57.199 40.909 0.00 0.00 0.00 3.58
140 141 5.862924 AAAAGATACAGACGGTGAATGTG 57.137 39.130 0.00 0.00 0.00 3.21
141 142 5.120208 CGAAAAAGATACAGACGGTGAATGT 59.880 40.000 0.00 0.00 0.00 2.71
142 143 5.347635 TCGAAAAAGATACAGACGGTGAATG 59.652 40.000 0.00 0.00 0.00 2.67
143 144 5.475719 TCGAAAAAGATACAGACGGTGAAT 58.524 37.500 0.00 0.00 0.00 2.57
144 145 4.873817 TCGAAAAAGATACAGACGGTGAA 58.126 39.130 0.00 0.00 0.00 3.18
145 146 4.508461 TCGAAAAAGATACAGACGGTGA 57.492 40.909 0.00 0.00 0.00 4.02
146 147 5.585500 TTTCGAAAAAGATACAGACGGTG 57.415 39.130 8.44 0.00 0.00 4.94
147 148 6.607735 TTTTTCGAAAAAGATACAGACGGT 57.392 33.333 27.64 0.00 33.29 4.83
157 158 8.367495 GTGTAATGCACCCTTTTTCGAAAAAGA 61.367 37.037 43.36 31.26 46.56 2.52
158 159 6.292114 GTGTAATGCACCCTTTTTCGAAAAAG 60.292 38.462 38.64 38.64 44.06 2.27
159 160 5.520649 GTGTAATGCACCCTTTTTCGAAAAA 59.479 36.000 28.86 28.86 42.10 1.94
160 161 5.044558 GTGTAATGCACCCTTTTTCGAAAA 58.955 37.500 19.08 19.08 42.10 2.29
161 162 4.612943 GTGTAATGCACCCTTTTTCGAAA 58.387 39.130 6.47 6.47 42.10 3.46
162 163 4.231718 GTGTAATGCACCCTTTTTCGAA 57.768 40.909 0.00 0.00 42.10 3.71
163 164 3.907894 GTGTAATGCACCCTTTTTCGA 57.092 42.857 0.00 0.00 42.10 3.71
173 174 2.045340 AGGCCGGGTGTAATGCAC 60.045 61.111 2.18 0.00 46.97 4.57
174 175 2.270850 GAGGCCGGGTGTAATGCA 59.729 61.111 2.18 0.00 0.00 3.96
175 176 1.819632 CAGAGGCCGGGTGTAATGC 60.820 63.158 2.18 0.00 0.00 3.56
176 177 1.819632 GCAGAGGCCGGGTGTAATG 60.820 63.158 2.18 0.00 0.00 1.90
177 178 1.635817 ATGCAGAGGCCGGGTGTAAT 61.636 55.000 2.18 0.00 40.13 1.89
178 179 0.978667 TATGCAGAGGCCGGGTGTAA 60.979 55.000 2.18 0.00 40.13 2.41
179 180 1.382009 TATGCAGAGGCCGGGTGTA 60.382 57.895 2.18 0.00 40.13 2.90
180 181 2.687200 TATGCAGAGGCCGGGTGT 60.687 61.111 2.18 0.00 40.13 4.16
181 182 2.109799 CTATGCAGAGGCCGGGTG 59.890 66.667 2.18 0.00 40.13 4.61
182 183 2.946988 TAGCTATGCAGAGGCCGGGT 62.947 60.000 10.92 0.00 40.13 5.28
183 184 1.758440 TTAGCTATGCAGAGGCCGGG 61.758 60.000 10.92 0.00 40.13 5.73
184 185 0.320247 CTTAGCTATGCAGAGGCCGG 60.320 60.000 10.92 0.00 40.13 6.13
185 186 0.676184 TCTTAGCTATGCAGAGGCCG 59.324 55.000 10.92 0.00 40.13 6.13
186 187 2.697654 CATCTTAGCTATGCAGAGGCC 58.302 52.381 10.92 0.00 40.13 5.19
194 195 2.547211 GGCTGTGTGCATCTTAGCTATG 59.453 50.000 12.70 0.00 45.15 2.23
195 196 2.171237 TGGCTGTGTGCATCTTAGCTAT 59.829 45.455 12.70 0.00 45.15 2.97
196 197 1.554617 TGGCTGTGTGCATCTTAGCTA 59.445 47.619 12.70 0.00 45.15 3.32
197 198 0.325933 TGGCTGTGTGCATCTTAGCT 59.674 50.000 12.70 0.00 45.15 3.32
198 199 1.167851 TTGGCTGTGTGCATCTTAGC 58.832 50.000 0.00 0.00 45.15 3.09
199 200 2.553602 TGTTTGGCTGTGTGCATCTTAG 59.446 45.455 0.00 0.00 45.15 2.18
200 201 2.580962 TGTTTGGCTGTGTGCATCTTA 58.419 42.857 0.00 0.00 45.15 2.10
201 202 1.401761 TGTTTGGCTGTGTGCATCTT 58.598 45.000 0.00 0.00 45.15 2.40
202 203 1.401761 TTGTTTGGCTGTGTGCATCT 58.598 45.000 0.00 0.00 45.15 2.90
203 204 2.443887 ATTGTTTGGCTGTGTGCATC 57.556 45.000 0.00 0.00 45.15 3.91
204 205 3.119029 GGATATTGTTTGGCTGTGTGCAT 60.119 43.478 0.00 0.00 45.15 3.96
205 206 2.230992 GGATATTGTTTGGCTGTGTGCA 59.769 45.455 0.00 0.00 45.15 4.57
206 207 2.493278 AGGATATTGTTTGGCTGTGTGC 59.507 45.455 0.00 0.00 41.94 4.57
207 208 4.012374 AGAGGATATTGTTTGGCTGTGTG 58.988 43.478 0.00 0.00 0.00 3.82
208 209 4.263462 TGAGAGGATATTGTTTGGCTGTGT 60.263 41.667 0.00 0.00 0.00 3.72
209 210 4.264253 TGAGAGGATATTGTTTGGCTGTG 58.736 43.478 0.00 0.00 0.00 3.66
210 211 4.574674 TGAGAGGATATTGTTTGGCTGT 57.425 40.909 0.00 0.00 0.00 4.40
211 212 5.591472 TGAATGAGAGGATATTGTTTGGCTG 59.409 40.000 0.00 0.00 0.00 4.85
212 213 5.759059 TGAATGAGAGGATATTGTTTGGCT 58.241 37.500 0.00 0.00 0.00 4.75
213 214 6.455360 TTGAATGAGAGGATATTGTTTGGC 57.545 37.500 0.00 0.00 0.00 4.52
214 215 9.143631 GTTTTTGAATGAGAGGATATTGTTTGG 57.856 33.333 0.00 0.00 0.00 3.28
215 216 9.695526 TGTTTTTGAATGAGAGGATATTGTTTG 57.304 29.630 0.00 0.00 0.00 2.93
216 217 9.696917 GTGTTTTTGAATGAGAGGATATTGTTT 57.303 29.630 0.00 0.00 0.00 2.83
217 218 8.306761 GGTGTTTTTGAATGAGAGGATATTGTT 58.693 33.333 0.00 0.00 0.00 2.83
218 219 7.362056 CGGTGTTTTTGAATGAGAGGATATTGT 60.362 37.037 0.00 0.00 0.00 2.71
219 220 6.968904 CGGTGTTTTTGAATGAGAGGATATTG 59.031 38.462 0.00 0.00 0.00 1.90
220 221 6.659242 ACGGTGTTTTTGAATGAGAGGATATT 59.341 34.615 0.00 0.00 0.00 1.28
221 222 6.180472 ACGGTGTTTTTGAATGAGAGGATAT 58.820 36.000 0.00 0.00 0.00 1.63
222 223 5.556915 ACGGTGTTTTTGAATGAGAGGATA 58.443 37.500 0.00 0.00 0.00 2.59
223 224 4.398319 ACGGTGTTTTTGAATGAGAGGAT 58.602 39.130 0.00 0.00 0.00 3.24
224 225 3.813166 GACGGTGTTTTTGAATGAGAGGA 59.187 43.478 0.00 0.00 0.00 3.71
225 226 3.815401 AGACGGTGTTTTTGAATGAGAGG 59.185 43.478 0.00 0.00 0.00 3.69
226 227 4.273480 ACAGACGGTGTTTTTGAATGAGAG 59.727 41.667 0.00 0.00 34.94 3.20
227 228 4.196193 ACAGACGGTGTTTTTGAATGAGA 58.804 39.130 0.00 0.00 34.94 3.27
228 229 4.552166 ACAGACGGTGTTTTTGAATGAG 57.448 40.909 0.00 0.00 34.94 2.90
229 230 5.995282 AGATACAGACGGTGTTTTTGAATGA 59.005 36.000 0.00 0.00 40.94 2.57
230 231 6.079763 CAGATACAGACGGTGTTTTTGAATG 58.920 40.000 0.00 0.00 40.94 2.67
231 232 5.763204 ACAGATACAGACGGTGTTTTTGAAT 59.237 36.000 7.69 0.00 40.94 2.57
232 233 5.120399 ACAGATACAGACGGTGTTTTTGAA 58.880 37.500 7.69 0.00 40.94 2.69
233 234 4.699637 ACAGATACAGACGGTGTTTTTGA 58.300 39.130 7.69 0.00 40.94 2.69
234 235 6.147164 ACATACAGATACAGACGGTGTTTTTG 59.853 38.462 0.00 0.00 40.94 2.44
235 236 6.147164 CACATACAGATACAGACGGTGTTTTT 59.853 38.462 0.00 0.00 40.94 1.94
236 237 5.637810 CACATACAGATACAGACGGTGTTTT 59.362 40.000 0.00 0.00 40.94 2.43
237 238 5.168569 CACATACAGATACAGACGGTGTTT 58.831 41.667 0.00 0.00 40.94 2.83
238 239 4.219944 ACACATACAGATACAGACGGTGTT 59.780 41.667 0.00 0.00 40.94 3.32
239 240 3.762288 ACACATACAGATACAGACGGTGT 59.238 43.478 0.00 0.00 43.86 4.16
240 241 4.105486 CACACATACAGATACAGACGGTG 58.895 47.826 0.00 0.00 0.00 4.94
241 242 4.014406 TCACACATACAGATACAGACGGT 58.986 43.478 0.00 0.00 0.00 4.83
242 243 4.142469 TGTCACACATACAGATACAGACGG 60.142 45.833 0.00 0.00 0.00 4.79
243 244 4.793731 GTGTCACACATACAGATACAGACG 59.206 45.833 2.00 0.00 34.08 4.18
244 245 5.709966 TGTGTCACACATACAGATACAGAC 58.290 41.667 6.50 0.00 39.62 3.51
274 275 2.166741 TTGTTTGTTTGTCTGCGACG 57.833 45.000 0.00 0.00 34.95 5.12
275 276 3.238441 TGTTTGTTTGTTTGTCTGCGAC 58.762 40.909 0.00 2.32 0.00 5.19
281 282 7.750014 AGCAATGATTTTGTTTGTTTGTTTGTC 59.250 29.630 0.00 0.00 0.00 3.18
352 358 2.628178 TCCCGCATTGTCTAATCTCGAT 59.372 45.455 0.00 0.00 0.00 3.59
353 359 2.028876 TCCCGCATTGTCTAATCTCGA 58.971 47.619 0.00 0.00 0.00 4.04
354 360 2.128035 GTCCCGCATTGTCTAATCTCG 58.872 52.381 0.00 0.00 0.00 4.04
355 361 2.128035 CGTCCCGCATTGTCTAATCTC 58.872 52.381 0.00 0.00 0.00 2.75
394 401 1.003866 GTTGAACCGTCTGTTGAGTGC 60.004 52.381 0.00 0.00 37.29 4.40
405 412 1.014352 GCACTCTGTTGTTGAACCGT 58.986 50.000 0.00 0.00 0.00 4.83
407 414 1.334869 CCTGCACTCTGTTGTTGAACC 59.665 52.381 0.00 0.00 0.00 3.62
415 422 0.109342 CCCAGAACCTGCACTCTGTT 59.891 55.000 12.43 1.59 37.89 3.16
430 437 0.754957 AGACGAGATGAGGAGCCCAG 60.755 60.000 0.00 0.00 0.00 4.45
441 448 6.758886 GGTGAAAATAATCAGTCAGACGAGAT 59.241 38.462 5.90 5.90 0.00 2.75
446 456 4.332819 CCGGGTGAAAATAATCAGTCAGAC 59.667 45.833 0.00 0.00 0.00 3.51
508 519 2.890474 GATACGTGTGCAGGGCCG 60.890 66.667 0.00 0.00 0.00 6.13
545 556 2.432456 GACATGAGTGCACCGCGA 60.432 61.111 14.63 0.00 0.00 5.87
555 568 4.084693 CCGATCAATCATTCGTGACATGAG 60.085 45.833 0.00 0.00 34.12 2.90
586 599 0.165079 CGGTGATTTTTCGTGACCGG 59.835 55.000 0.00 0.00 44.67 5.28
588 601 1.463444 CTCCGGTGATTTTTCGTGACC 59.537 52.381 0.00 0.00 0.00 4.02
589 602 1.463444 CCTCCGGTGATTTTTCGTGAC 59.537 52.381 4.76 0.00 0.00 3.67
590 603 1.803334 CCTCCGGTGATTTTTCGTGA 58.197 50.000 4.76 0.00 0.00 4.35
592 605 0.250553 TGCCTCCGGTGATTTTTCGT 60.251 50.000 4.76 0.00 0.00 3.85
594 607 1.469767 GCATGCCTCCGGTGATTTTTC 60.470 52.381 6.36 0.00 0.00 2.29
603 616 2.974698 GATTCCGCATGCCTCCGG 60.975 66.667 13.15 7.62 45.64 5.14
604 617 3.341043 CGATTCCGCATGCCTCCG 61.341 66.667 13.15 5.21 0.00 4.63
799 838 5.830991 ACATGGCAGACAAGGTAAACTAAAA 59.169 36.000 0.00 0.00 0.00 1.52
851 896 0.667487 TCTGAGCGCTTTCCGACTTG 60.667 55.000 13.26 0.00 40.02 3.16
859 904 0.687354 TCCTTCCTTCTGAGCGCTTT 59.313 50.000 13.26 0.00 0.00 3.51
886 931 2.212652 GGTTACGTTCGGGTTCAAGTT 58.787 47.619 0.00 0.00 0.00 2.66
896 941 2.877582 CTCGGGCGGTTACGTTCG 60.878 66.667 0.00 0.00 43.45 3.95
897 942 3.184003 GCTCGGGCGGTTACGTTC 61.184 66.667 0.00 0.00 43.45 3.95
898 943 3.518419 TTGCTCGGGCGGTTACGTT 62.518 57.895 1.14 0.00 43.45 3.99
899 944 3.927163 CTTGCTCGGGCGGTTACGT 62.927 63.158 1.14 0.00 43.45 3.57
900 945 3.186047 CTTGCTCGGGCGGTTACG 61.186 66.667 1.14 0.00 42.25 3.18
901 946 3.497031 GCTTGCTCGGGCGGTTAC 61.497 66.667 1.14 0.00 42.25 2.50
902 947 1.962321 TATGCTTGCTCGGGCGGTTA 61.962 55.000 1.14 0.00 42.25 2.85
957 1002 2.131067 CGCCTTCCCTCTCCTCTCC 61.131 68.421 0.00 0.00 0.00 3.71
1064 1109 3.123620 GAAGCAGGGCAGAGCACG 61.124 66.667 0.00 0.00 36.86 5.34
1083 1138 5.509840 CGTATATAGCAGAAGGAAGCAAGGT 60.510 44.000 0.00 0.00 0.00 3.50
1093 1148 8.132362 AGAGAACAAACTCGTATATAGCAGAAG 58.868 37.037 0.00 0.00 41.25 2.85
1106 1164 4.375506 GCGAGAAAGAAGAGAACAAACTCG 60.376 45.833 0.00 0.00 44.45 4.18
1113 1171 0.716666 GGCGCGAGAAAGAAGAGAAC 59.283 55.000 12.10 0.00 0.00 3.01
1174 1232 2.109126 GCTGTTGACCCGGCTGATC 61.109 63.158 0.00 0.00 33.80 2.92
1186 1244 1.824230 AGAGAGTAGGCAGAGCTGTTG 59.176 52.381 0.00 0.00 0.00 3.33
1197 1255 3.597728 GGCGGCGGAGAGAGTAGG 61.598 72.222 9.78 0.00 0.00 3.18
1198 1256 3.955101 CGGCGGCGGAGAGAGTAG 61.955 72.222 25.36 0.00 0.00 2.57
1228 1290 3.181530 CGTACTGAATTCGACAGGCAAAG 60.182 47.826 6.49 0.00 39.38 2.77
1253 1320 2.391879 ACGACTAGACGAGCAACAAAC 58.608 47.619 21.04 0.00 37.03 2.93
1262 1329 1.002888 AGGTGGAAGACGACTAGACGA 59.997 52.381 21.04 0.00 37.03 4.20
1263 1330 1.397692 GAGGTGGAAGACGACTAGACG 59.602 57.143 13.02 13.02 39.31 4.18
1264 1331 1.744522 GGAGGTGGAAGACGACTAGAC 59.255 57.143 0.00 0.00 0.00 2.59
1265 1332 1.340795 GGGAGGTGGAAGACGACTAGA 60.341 57.143 0.00 0.00 0.00 2.43
1266 1333 1.104630 GGGAGGTGGAAGACGACTAG 58.895 60.000 0.00 0.00 0.00 2.57
1267 1334 0.406750 TGGGAGGTGGAAGACGACTA 59.593 55.000 0.00 0.00 0.00 2.59
1268 1335 0.471211 TTGGGAGGTGGAAGACGACT 60.471 55.000 0.00 0.00 0.00 4.18
1269 1336 0.613777 ATTGGGAGGTGGAAGACGAC 59.386 55.000 0.00 0.00 0.00 4.34
1280 1347 1.146263 GGCACTACGGATTGGGAGG 59.854 63.158 0.00 0.00 0.00 4.30
1286 1353 0.322322 TGGAAACGGCACTACGGATT 59.678 50.000 0.00 0.00 38.39 3.01
1287 1354 0.108329 CTGGAAACGGCACTACGGAT 60.108 55.000 0.00 0.00 38.39 4.18
1306 1373 4.821589 CGGCCTCTCGGTTGCTCC 62.822 72.222 0.00 0.00 0.00 4.70
1359 1446 1.260538 TACAGCAGAGTCCAGGCCTG 61.261 60.000 26.87 26.87 0.00 4.85
1363 1450 1.519719 GCCTACAGCAGAGTCCAGG 59.480 63.158 0.00 0.00 42.97 4.45
1434 1521 2.561478 ATACCACCGGATACCAATGC 57.439 50.000 9.46 0.00 0.00 3.56
1445 1532 0.035439 AGGAGTGCCAAATACCACCG 60.035 55.000 0.00 0.00 36.29 4.94
1447 1534 7.122204 AGTTTTTATAGGAGTGCCAAATACCAC 59.878 37.037 0.00 0.00 36.29 4.16
1448 1535 7.179269 AGTTTTTATAGGAGTGCCAAATACCA 58.821 34.615 0.00 0.00 36.29 3.25
1450 1537 7.973944 CCAAGTTTTTATAGGAGTGCCAAATAC 59.026 37.037 0.00 0.00 36.29 1.89
1453 1540 5.245075 CCCAAGTTTTTATAGGAGTGCCAAA 59.755 40.000 0.00 0.00 36.29 3.28
1454 1541 4.770010 CCCAAGTTTTTATAGGAGTGCCAA 59.230 41.667 0.00 0.00 36.29 4.52
1455 1542 4.043561 TCCCAAGTTTTTATAGGAGTGCCA 59.956 41.667 0.00 0.00 36.29 4.92
1456 1543 4.595986 TCCCAAGTTTTTATAGGAGTGCC 58.404 43.478 0.00 0.00 0.00 5.01
1457 1544 5.125578 CCTTCCCAAGTTTTTATAGGAGTGC 59.874 44.000 0.00 0.00 0.00 4.40
1499 1608 1.455959 TAGAGAGCGGCTCCTTCCC 60.456 63.158 25.49 10.42 45.10 3.97
1515 1624 5.107875 GGTTACGTTCGTGTTGGTAAAGTAG 60.108 44.000 8.14 0.00 0.00 2.57
1516 1625 4.742659 GGTTACGTTCGTGTTGGTAAAGTA 59.257 41.667 8.14 0.00 0.00 2.24
1517 1626 3.555547 GGTTACGTTCGTGTTGGTAAAGT 59.444 43.478 8.14 0.00 0.00 2.66
1518 1627 3.361917 CGGTTACGTTCGTGTTGGTAAAG 60.362 47.826 8.14 0.00 34.81 1.85
1520 1629 2.123342 CGGTTACGTTCGTGTTGGTAA 58.877 47.619 8.14 0.00 34.81 2.85
1521 1630 1.764851 CGGTTACGTTCGTGTTGGTA 58.235 50.000 8.14 0.00 34.81 3.25
1522 1631 1.489881 GCGGTTACGTTCGTGTTGGT 61.490 55.000 8.14 0.00 43.45 3.67
1523 1632 1.202320 GCGGTTACGTTCGTGTTGG 59.798 57.895 8.14 0.00 43.45 3.77
1524 1633 1.202320 GGCGGTTACGTTCGTGTTG 59.798 57.895 8.14 0.00 43.45 3.33
1527 1636 2.356075 TGGGCGGTTACGTTCGTG 60.356 61.111 8.14 0.00 43.45 4.35
1546 1655 2.839228 GGATATATGAGGTCTGGGCCT 58.161 52.381 4.53 0.00 42.53 5.19
1547 1656 1.482593 CGGATATATGAGGTCTGGGCC 59.517 57.143 0.00 0.00 0.00 5.80
1548 1657 1.134670 GCGGATATATGAGGTCTGGGC 60.135 57.143 0.00 0.00 0.00 5.36
1570 1685 3.721706 CCCTGTGGCCCTGTCCTC 61.722 72.222 0.00 0.00 0.00 3.71
1581 1696 3.465403 CTCCTCTCGGCCCCTGTG 61.465 72.222 0.00 0.00 0.00 3.66
1582 1697 3.670629 CTCTCCTCTCGGCCCCTGT 62.671 68.421 0.00 0.00 0.00 4.00
1596 1711 1.062002 CTCGTCTCGTTCTCTGCTCTC 59.938 57.143 0.00 0.00 0.00 3.20
1616 1738 2.325857 GACGCGATGCTCCATTGC 59.674 61.111 15.93 7.25 45.06 3.56
1700 1825 1.203364 AGAAGGAAGCAAGGAGGAGGA 60.203 52.381 0.00 0.00 0.00 3.71
1703 1828 0.326264 GCAGAAGGAAGCAAGGAGGA 59.674 55.000 0.00 0.00 0.00 3.71
1722 1852 4.756135 AGCAAGAAGAGAAAAGCTCAAGAG 59.244 41.667 0.00 0.00 46.45 2.85
1723 1853 4.712476 AGCAAGAAGAGAAAAGCTCAAGA 58.288 39.130 0.00 0.00 46.45 3.02
1724 1854 5.213675 CAAGCAAGAAGAGAAAAGCTCAAG 58.786 41.667 0.00 0.00 46.45 3.02
1725 1855 4.641989 ACAAGCAAGAAGAGAAAAGCTCAA 59.358 37.500 0.00 0.00 46.45 3.02
1726 1856 4.202441 ACAAGCAAGAAGAGAAAAGCTCA 58.798 39.130 0.00 0.00 46.45 4.26
1727 1857 4.827304 ACAAGCAAGAAGAGAAAAGCTC 57.173 40.909 0.00 0.00 44.29 4.09
1728 1858 4.517075 GGTACAAGCAAGAAGAGAAAAGCT 59.483 41.667 0.00 0.00 0.00 3.74
1729 1859 4.320567 GGGTACAAGCAAGAAGAGAAAAGC 60.321 45.833 0.00 0.00 0.00 3.51
1730 1860 5.066593 AGGGTACAAGCAAGAAGAGAAAAG 58.933 41.667 0.00 0.00 0.00 2.27
1731 1861 5.048846 AGGGTACAAGCAAGAAGAGAAAA 57.951 39.130 0.00 0.00 0.00 2.29
1732 1862 4.706842 AGGGTACAAGCAAGAAGAGAAA 57.293 40.909 0.00 0.00 0.00 2.52
1733 1863 4.505039 GGAAGGGTACAAGCAAGAAGAGAA 60.505 45.833 0.00 0.00 0.00 2.87
1734 1864 3.008049 GGAAGGGTACAAGCAAGAAGAGA 59.992 47.826 0.00 0.00 0.00 3.10
1735 1865 3.008485 AGGAAGGGTACAAGCAAGAAGAG 59.992 47.826 0.00 0.00 0.00 2.85
1736 1866 2.979678 AGGAAGGGTACAAGCAAGAAGA 59.020 45.455 0.00 0.00 0.00 2.87
1749 1879 2.285743 GGAGGCTGGAGGAAGGGT 60.286 66.667 0.00 0.00 0.00 4.34
1751 1881 4.168291 GCGGAGGCTGGAGGAAGG 62.168 72.222 0.00 0.00 35.83 3.46
1803 1948 1.202121 GGCAGAAGCGCAGAAAGAATC 60.202 52.381 11.47 0.00 43.41 2.52
1809 1954 0.742281 GAGATGGCAGAAGCGCAGAA 60.742 55.000 11.47 0.00 43.41 3.02
1812 1957 2.505635 TTCGAGATGGCAGAAGCGCA 62.506 55.000 11.47 0.00 43.41 6.09
1834 1979 2.618241 TGCATAGAATTCGATGGGCAAC 59.382 45.455 24.36 11.64 30.96 4.17
1841 1986 4.371786 ACACATCGTGCATAGAATTCGAT 58.628 39.130 0.00 0.00 40.95 3.59
1852 1997 1.071299 AGGAGCAACACATCGTGCA 59.929 52.632 0.00 0.00 36.98 4.57
1853 1998 1.499056 CAGGAGCAACACATCGTGC 59.501 57.895 0.00 0.00 36.98 5.34
1866 2011 3.006728 TACCGGTTGGGGCAGGAG 61.007 66.667 15.04 0.00 41.60 3.69
1869 2014 2.046314 CACTACCGGTTGGGGCAG 60.046 66.667 15.04 5.08 41.60 4.85
1880 2032 0.173708 CTCTTGGAGACGGCACTACC 59.826 60.000 0.00 0.00 0.00 3.18
1883 2035 0.759346 AAACTCTTGGAGACGGCACT 59.241 50.000 0.00 0.00 33.32 4.40
1891 2043 5.762218 ACAGTCTTGATTGAAACTCTTGGAG 59.238 40.000 0.20 0.00 35.52 3.86
1906 2059 1.662517 TGCAGCGAAAACAGTCTTGA 58.337 45.000 0.00 0.00 0.00 3.02
1908 2061 3.715628 AATTGCAGCGAAAACAGTCTT 57.284 38.095 0.00 0.00 0.00 3.01
1909 2062 3.363970 CGTAATTGCAGCGAAAACAGTCT 60.364 43.478 0.00 0.00 0.00 3.24
1910 2063 2.902484 CGTAATTGCAGCGAAAACAGTC 59.098 45.455 0.00 0.00 0.00 3.51
1911 2064 2.350388 CCGTAATTGCAGCGAAAACAGT 60.350 45.455 0.00 0.00 0.00 3.55
1923 2076 2.489751 GCACAGCCCCGTAATTGC 59.510 61.111 0.00 0.00 0.00 3.56
1947 2100 0.533032 GGTAGCTCGAACAGGCTCTT 59.467 55.000 0.00 0.00 39.65 2.85
1948 2101 0.612174 TGGTAGCTCGAACAGGCTCT 60.612 55.000 0.00 0.00 39.65 4.09
1949 2102 0.461961 ATGGTAGCTCGAACAGGCTC 59.538 55.000 0.00 0.00 39.65 4.70
1951 2104 0.175760 TGATGGTAGCTCGAACAGGC 59.824 55.000 0.00 0.00 0.00 4.85
1952 2105 2.544685 CTTGATGGTAGCTCGAACAGG 58.455 52.381 0.00 0.00 0.00 4.00
1953 2106 1.929836 GCTTGATGGTAGCTCGAACAG 59.070 52.381 0.00 0.00 35.74 3.16
1954 2107 1.550524 AGCTTGATGGTAGCTCGAACA 59.449 47.619 0.00 0.00 45.52 3.18
1956 2109 2.223502 CGTAGCTTGATGGTAGCTCGAA 60.224 50.000 0.00 0.00 45.52 3.71
1957 2110 1.333931 CGTAGCTTGATGGTAGCTCGA 59.666 52.381 0.00 0.00 45.52 4.04
1958 2111 1.333931 TCGTAGCTTGATGGTAGCTCG 59.666 52.381 0.00 5.70 45.52 5.03
1966 2128 2.995939 TGCTCTGTTTCGTAGCTTGATG 59.004 45.455 0.00 0.00 37.16 3.07
1967 2129 3.319137 TGCTCTGTTTCGTAGCTTGAT 57.681 42.857 0.00 0.00 37.16 2.57
1977 2139 4.121317 CTGAGATCTCCATGCTCTGTTTC 58.879 47.826 20.03 0.00 0.00 2.78
1979 2141 3.372897 TCTGAGATCTCCATGCTCTGTT 58.627 45.455 20.03 0.00 0.00 3.16
1980 2142 3.029483 TCTGAGATCTCCATGCTCTGT 57.971 47.619 20.03 0.00 0.00 3.41
1981 2143 3.056393 GGATCTGAGATCTCCATGCTCTG 60.056 52.174 20.73 0.00 0.00 3.35
2004 2171 1.375523 AATTCGACGCAGGTCCACC 60.376 57.895 0.00 0.00 40.17 4.61
2006 2173 2.032634 GCAATTCGACGCAGGTCCA 61.033 57.895 0.00 0.00 40.17 4.02
2008 2175 0.737715 AGAGCAATTCGACGCAGGTC 60.738 55.000 3.75 1.33 39.89 3.85
2009 2176 0.320771 AAGAGCAATTCGACGCAGGT 60.321 50.000 3.75 0.00 0.00 4.00
2015 2182 4.092091 CAGTTAGTGGAAGAGCAATTCGAC 59.908 45.833 7.65 7.65 37.96 4.20
2017 2184 3.997021 ACAGTTAGTGGAAGAGCAATTCG 59.003 43.478 0.00 0.00 0.00 3.34
2028 2196 2.786777 TGACGAGCTACAGTTAGTGGA 58.213 47.619 0.00 0.00 0.00 4.02
2032 2200 3.786576 CGACAATGACGAGCTACAGTTAG 59.213 47.826 0.00 0.00 0.00 2.34
2109 2281 1.534729 GCGGGAAACTTGAAGATGGT 58.465 50.000 0.00 0.00 0.00 3.55
2117 2289 0.165944 GTGATGACGCGGGAAACTTG 59.834 55.000 12.47 0.00 0.00 3.16
2157 2330 3.775661 AGAAAAAGTGTGTTGGTTCGG 57.224 42.857 0.00 0.00 0.00 4.30
2230 2411 7.139392 GTGAGATTGACATATACTCGCAAGTA 58.861 38.462 0.00 0.00 42.10 2.24
2232 2413 5.403766 GGTGAGATTGACATATACTCGCAAG 59.596 44.000 0.00 0.00 39.06 4.01
2233 2414 5.069119 AGGTGAGATTGACATATACTCGCAA 59.931 40.000 0.00 0.00 39.06 4.85
2234 2415 4.584743 AGGTGAGATTGACATATACTCGCA 59.415 41.667 0.00 0.00 39.06 5.10
2235 2416 4.920340 CAGGTGAGATTGACATATACTCGC 59.080 45.833 0.00 0.00 37.37 5.03
2236 2417 6.146216 GTCAGGTGAGATTGACATATACTCG 58.854 44.000 0.12 0.00 42.47 4.18
2237 2418 6.451393 GGTCAGGTGAGATTGACATATACTC 58.549 44.000 6.91 0.00 44.23 2.59
2238 2419 5.010112 CGGTCAGGTGAGATTGACATATACT 59.990 44.000 6.91 0.00 44.23 2.12
2239 2420 5.223382 CGGTCAGGTGAGATTGACATATAC 58.777 45.833 6.91 0.00 44.23 1.47
2240 2421 4.262036 GCGGTCAGGTGAGATTGACATATA 60.262 45.833 6.91 0.00 44.23 0.86
2241 2422 3.493350 GCGGTCAGGTGAGATTGACATAT 60.493 47.826 6.91 0.00 44.23 1.78
2248 2429 0.687354 AGTTGCGGTCAGGTGAGATT 59.313 50.000 0.00 0.00 0.00 2.40
2281 2462 8.110271 CCTACTATACTCCAACTGATATCCAGA 58.890 40.741 0.00 0.00 45.78 3.86
2318 2499 3.119990 ACTTGCACAAAATAATCGGTCGG 60.120 43.478 0.00 0.00 0.00 4.79
2348 2530 2.743636 TTAGGTCGGCAGTCTCTTTG 57.256 50.000 0.00 0.00 0.00 2.77
2422 2605 9.587772 TCGAAAATATCTTCTTCGAAAAGAGAT 57.412 29.630 19.94 18.51 45.64 2.75
3047 3236 1.278238 GGTACGCGTTGATGAGGAAG 58.722 55.000 20.78 0.00 0.00 3.46
3068 3257 1.486726 CTCCCCTTGTAGGCGAAGAAT 59.513 52.381 0.00 0.00 32.73 2.40
3263 3458 1.511768 CTCGTCCTCGTCCCCTTTC 59.488 63.158 0.00 0.00 38.33 2.62
3266 3461 3.659496 ACCTCGTCCTCGTCCCCT 61.659 66.667 0.00 0.00 38.33 4.79
3586 3799 5.871396 AGATAATCTTCTTCTTACCGCCA 57.129 39.130 0.00 0.00 0.00 5.69
3587 3800 6.772770 GAAGATAATCTTCTTCTTACCGCC 57.227 41.667 10.78 0.00 46.98 6.13
3791 4005 3.142174 GCGGGAATAATCAGAGAAAGGG 58.858 50.000 0.00 0.00 0.00 3.95
3823 4037 2.545731 GTGCCTTTTCCTCTCGAGATC 58.454 52.381 17.03 0.00 0.00 2.75
3824 4038 1.134965 CGTGCCTTTTCCTCTCGAGAT 60.135 52.381 17.03 0.00 0.00 2.75
3825 4039 0.243907 CGTGCCTTTTCCTCTCGAGA 59.756 55.000 15.70 15.70 0.00 4.04
3826 4040 0.737715 CCGTGCCTTTTCCTCTCGAG 60.738 60.000 5.93 5.93 0.00 4.04
3851 4065 1.685224 GGGTGCCTCCACATCTTCA 59.315 57.895 0.00 0.00 43.88 3.02
3852 4066 1.077429 GGGGTGCCTCCACATCTTC 60.077 63.158 0.00 0.00 43.88 2.87
3955 4179 2.133281 TCCCGCTAAGTGCTACTACA 57.867 50.000 0.00 0.00 40.11 2.74
3956 4180 3.129988 TCTTTCCCGCTAAGTGCTACTAC 59.870 47.826 0.00 0.00 40.11 2.73
3958 4182 2.176889 TCTTTCCCGCTAAGTGCTACT 58.823 47.619 0.00 0.00 40.11 2.57
3959 4183 2.667473 TCTTTCCCGCTAAGTGCTAC 57.333 50.000 0.00 0.00 40.11 3.58
3960 4184 3.688694 TTTCTTTCCCGCTAAGTGCTA 57.311 42.857 0.00 0.00 40.11 3.49
3961 4185 2.561478 TTTCTTTCCCGCTAAGTGCT 57.439 45.000 0.00 0.00 40.11 4.40
3962 4186 2.223044 CGATTTCTTTCCCGCTAAGTGC 60.223 50.000 0.00 0.00 38.57 4.40
3963 4187 3.000727 ACGATTTCTTTCCCGCTAAGTG 58.999 45.455 0.00 0.00 0.00 3.16
3964 4188 3.000727 CACGATTTCTTTCCCGCTAAGT 58.999 45.455 0.00 0.00 0.00 2.24
3965 4189 3.000727 ACACGATTTCTTTCCCGCTAAG 58.999 45.455 0.00 0.00 0.00 2.18
3966 4190 2.997986 GACACGATTTCTTTCCCGCTAA 59.002 45.455 0.00 0.00 0.00 3.09
3967 4191 2.028839 TGACACGATTTCTTTCCCGCTA 60.029 45.455 0.00 0.00 0.00 4.26
3969 4193 1.128692 CTGACACGATTTCTTTCCCGC 59.871 52.381 0.00 0.00 0.00 6.13
3970 4194 1.732259 CCTGACACGATTTCTTTCCCG 59.268 52.381 0.00 0.00 0.00 5.14
3971 4195 2.084546 CCCTGACACGATTTCTTTCCC 58.915 52.381 0.00 0.00 0.00 3.97
3972 4196 3.053831 TCCCTGACACGATTTCTTTCC 57.946 47.619 0.00 0.00 0.00 3.13
4103 4327 1.135286 CCGCAGAAAAAGCCCAAGATC 60.135 52.381 0.00 0.00 0.00 2.75
4125 4358 2.030946 GCTAACGTTATCTGCAAGCCAG 59.969 50.000 8.76 0.00 43.17 4.85
4182 4418 2.266055 GTGTGGAGGAAGCTCGGG 59.734 66.667 0.00 0.00 0.00 5.14
4214 4450 2.480610 CCCCAATCATTCGTGCGGG 61.481 63.158 0.00 0.00 0.00 6.13
4278 4521 3.133542 TCTGATGATGAACTAGTGGCCAG 59.866 47.826 5.11 0.00 0.00 4.85
4289 4534 5.586339 GTTCGATCTGAGTCTGATGATGAA 58.414 41.667 16.41 13.51 0.00 2.57
4306 4551 6.924060 CAGGGAAAATAAGTCTATCGTTCGAT 59.076 38.462 12.22 12.22 0.00 3.59
4307 4552 6.095860 TCAGGGAAAATAAGTCTATCGTTCGA 59.904 38.462 0.00 0.00 0.00 3.71
4308 4553 6.198591 GTCAGGGAAAATAAGTCTATCGTTCG 59.801 42.308 0.00 0.00 0.00 3.95
4309 4554 7.039882 TGTCAGGGAAAATAAGTCTATCGTTC 58.960 38.462 0.00 0.00 0.00 3.95
4345 4590 2.619177 TGAGGCGAGCTAGTGAGTTATC 59.381 50.000 0.00 0.00 0.00 1.75
4373 4625 2.444700 AAACTACCGTGTCAGGGGCG 62.445 60.000 15.79 8.36 35.02 6.13
4428 4680 1.870993 CGTCCGGAACTTCCTTTCGTT 60.871 52.381 5.23 0.00 33.30 3.85
4434 4686 1.541889 GGTTTTCGTCCGGAACTTCCT 60.542 52.381 5.23 0.00 33.30 3.36
4435 4687 0.870393 GGTTTTCGTCCGGAACTTCC 59.130 55.000 5.23 0.35 33.42 3.46
4436 4688 0.870393 GGGTTTTCGTCCGGAACTTC 59.130 55.000 5.23 0.00 33.42 3.01
4437 4689 0.535780 GGGGTTTTCGTCCGGAACTT 60.536 55.000 5.23 0.00 33.42 2.66
4438 4690 1.071987 GGGGTTTTCGTCCGGAACT 59.928 57.895 5.23 0.00 33.42 3.01
4439 4691 1.227913 TGGGGTTTTCGTCCGGAAC 60.228 57.895 5.23 0.00 33.42 3.62
4440 4692 1.071814 CTGGGGTTTTCGTCCGGAA 59.928 57.895 5.23 0.00 0.00 4.30
4441 4693 2.745037 CTGGGGTTTTCGTCCGGA 59.255 61.111 0.00 0.00 0.00 5.14
4442 4694 3.053896 GCTGGGGTTTTCGTCCGG 61.054 66.667 0.00 0.00 0.00 5.14
4443 4695 2.281208 TGCTGGGGTTTTCGTCCG 60.281 61.111 0.00 0.00 0.00 4.79
4444 4696 1.515521 CTGTGCTGGGGTTTTCGTCC 61.516 60.000 0.00 0.00 0.00 4.79
4445 4697 1.949257 CTGTGCTGGGGTTTTCGTC 59.051 57.895 0.00 0.00 0.00 4.20
4446 4698 2.193536 GCTGTGCTGGGGTTTTCGT 61.194 57.895 0.00 0.00 0.00 3.85
4447 4699 2.133742 CTGCTGTGCTGGGGTTTTCG 62.134 60.000 0.00 0.00 0.00 3.46
4448 4700 1.662044 CTGCTGTGCTGGGGTTTTC 59.338 57.895 0.00 0.00 0.00 2.29
4449 4701 2.501602 GCTGCTGTGCTGGGGTTTT 61.502 57.895 0.00 0.00 0.00 2.43
4450 4702 2.914097 GCTGCTGTGCTGGGGTTT 60.914 61.111 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.