Multiple sequence alignment - TraesCS3D01G366500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G366500 chr3D 100.000 2921 0 0 1 2921 480841368 480844288 0.000000e+00 5395
1 TraesCS3D01G366500 chr3D 89.412 935 91 5 1000 1930 482191076 482190146 0.000000e+00 1171
2 TraesCS3D01G366500 chr3D 74.132 835 165 41 1066 1878 455869717 455870522 6.120000e-77 298
3 TraesCS3D01G366500 chr3D 73.973 803 147 48 1084 1864 331657192 331657954 4.800000e-68 268
4 TraesCS3D01G366500 chr3D 72.840 810 156 47 1084 1864 363597666 363596892 4.900000e-53 219
5 TraesCS3D01G366500 chr3D 94.505 91 5 0 2163 2253 576600560 576600650 1.090000e-29 141
6 TraesCS3D01G366500 chr3D 83.217 143 17 5 2592 2731 365097021 365096883 1.100000e-24 124
7 TraesCS3D01G366500 chr3B 91.825 2104 75 23 1 2035 641659618 641661693 0.000000e+00 2843
8 TraesCS3D01G366500 chr3B 88.781 927 98 5 1000 1925 644172675 644171754 0.000000e+00 1131
9 TraesCS3D01G366500 chr3B 82.895 456 62 9 2392 2833 641663193 641663646 2.110000e-106 396
10 TraesCS3D01G366500 chr3B 73.892 835 161 47 1066 1878 602331238 602332037 6.160000e-72 281
11 TraesCS3D01G366500 chr3B 73.892 835 161 47 1066 1878 602352320 602353119 6.160000e-72 281
12 TraesCS3D01G366500 chr3B 75.197 633 117 30 1084 1708 431040220 431040820 2.230000e-66 263
13 TraesCS3D01G366500 chr3B 86.905 168 19 3 1986 2152 641662759 641662924 4.970000e-43 185
14 TraesCS3D01G366500 chr3B 91.837 98 8 0 2154 2251 146703732 146703829 1.410000e-28 137
15 TraesCS3D01G366500 chr3B 82.192 146 20 4 2592 2734 475463555 475463413 1.420000e-23 121
16 TraesCS3D01G366500 chr3B 78.488 172 31 5 2598 2767 611697144 611697311 1.110000e-19 108
17 TraesCS3D01G366500 chr3B 87.778 90 10 1 2296 2385 641661922 641662010 1.430000e-18 104
18 TraesCS3D01G366500 chr3A 94.780 1590 44 20 429 1991 623609454 623611031 0.000000e+00 2440
19 TraesCS3D01G366500 chr3A 89.968 947 82 10 1000 1939 625210613 625209673 0.000000e+00 1210
20 TraesCS3D01G366500 chr3A 89.538 411 28 6 1 397 623609040 623609449 9.340000e-140 507
21 TraesCS3D01G366500 chr3A 75.312 640 122 27 1075 1708 448701982 448702591 1.030000e-69 274
22 TraesCS3D01G366500 chr3A 73.477 837 167 44 1066 1878 598553481 598554286 6.210000e-67 265
23 TraesCS3D01G366500 chr3A 75.291 344 69 10 2468 2800 83734617 83734955 1.810000e-32 150
24 TraesCS3D01G366500 chr3A 96.552 87 3 0 2162 2248 83731741 83731827 8.440000e-31 145
25 TraesCS3D01G366500 chr3A 90.826 109 7 3 1986 2093 623612021 623612127 3.030000e-30 143
26 TraesCS3D01G366500 chr3A 93.617 94 4 2 2154 2247 658801098 658801189 3.930000e-29 139
27 TraesCS3D01G366500 chr3A 82.836 134 17 4 2592 2722 486936553 486936423 6.610000e-22 115
28 TraesCS3D01G366500 chr3A 90.000 90 8 1 2296 2385 623611215 623611303 6.610000e-22 115
29 TraesCS3D01G366500 chr4A 96.591 88 3 0 2163 2250 35625791 35625878 2.350000e-31 147
30 TraesCS3D01G366500 chr6D 94.624 93 5 0 2159 2251 25851206 25851114 8.440000e-31 145
31 TraesCS3D01G366500 chr6D 89.815 108 7 4 2145 2250 226771535 226771640 5.080000e-28 135
32 TraesCS3D01G366500 chr2B 86.131 137 14 5 2667 2800 571514436 571514302 3.030000e-30 143
33 TraesCS3D01G366500 chr2B 85.075 134 18 2 2668 2800 156915477 156915345 5.080000e-28 135
34 TraesCS3D01G366500 chr2B 80.282 142 20 6 2592 2732 2632605 2632739 1.850000e-17 100
35 TraesCS3D01G366500 chr7D 94.565 92 4 1 2163 2253 287721286 287721377 1.090000e-29 141
36 TraesCS3D01G366500 chr2D 91.919 99 8 0 2155 2253 27080976 27081074 3.930000e-29 139
37 TraesCS3D01G366500 chr7B 82.963 135 19 4 2667 2800 52353393 52353524 5.110000e-23 119
38 TraesCS3D01G366500 chr7B 82.353 136 21 3 2667 2800 194304875 194304741 6.610000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G366500 chr3D 480841368 480844288 2920 False 5395.00 5395 100.00000 1 2921 1 chr3D.!!$F3 2920
1 TraesCS3D01G366500 chr3D 482190146 482191076 930 True 1171.00 1171 89.41200 1000 1930 1 chr3D.!!$R3 930
2 TraesCS3D01G366500 chr3D 455869717 455870522 805 False 298.00 298 74.13200 1066 1878 1 chr3D.!!$F2 812
3 TraesCS3D01G366500 chr3D 331657192 331657954 762 False 268.00 268 73.97300 1084 1864 1 chr3D.!!$F1 780
4 TraesCS3D01G366500 chr3D 363596892 363597666 774 True 219.00 219 72.84000 1084 1864 1 chr3D.!!$R1 780
5 TraesCS3D01G366500 chr3B 644171754 644172675 921 True 1131.00 1131 88.78100 1000 1925 1 chr3B.!!$R2 925
6 TraesCS3D01G366500 chr3B 641659618 641663646 4028 False 882.00 2843 87.35075 1 2833 4 chr3B.!!$F6 2832
7 TraesCS3D01G366500 chr3B 602331238 602332037 799 False 281.00 281 73.89200 1066 1878 1 chr3B.!!$F3 812
8 TraesCS3D01G366500 chr3B 602352320 602353119 799 False 281.00 281 73.89200 1066 1878 1 chr3B.!!$F4 812
9 TraesCS3D01G366500 chr3B 431040220 431040820 600 False 263.00 263 75.19700 1084 1708 1 chr3B.!!$F2 624
10 TraesCS3D01G366500 chr3A 625209673 625210613 940 True 1210.00 1210 89.96800 1000 1939 1 chr3A.!!$R2 939
11 TraesCS3D01G366500 chr3A 623609040 623612127 3087 False 801.25 2440 91.28600 1 2385 4 chr3A.!!$F5 2384
12 TraesCS3D01G366500 chr3A 448701982 448702591 609 False 274.00 274 75.31200 1075 1708 1 chr3A.!!$F1 633
13 TraesCS3D01G366500 chr3A 598553481 598554286 805 False 265.00 265 73.47700 1066 1878 1 chr3A.!!$F2 812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
560 575 1.13453 CTCTCACGCACCGAACGATC 61.135 60.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2303 3562 0.032912 TGACCTGCTATGTCCGGGTA 60.033 55.0 0.0 0.0 41.93 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
246 255 4.209911 GCCATTGAGTTGTTTTTCTTGAGC 59.790 41.667 0.00 0.00 0.00 4.26
328 343 4.678256 ACTGACAAGGACTGAAGGAGATA 58.322 43.478 0.00 0.00 0.00 1.98
330 345 4.026744 TGACAAGGACTGAAGGAGATAGG 58.973 47.826 0.00 0.00 0.00 2.57
337 352 2.625790 ACTGAAGGAGATAGGCACGATC 59.374 50.000 0.00 0.00 40.83 3.69
352 367 3.426859 GCACGATCCAGACGAAATGATAG 59.573 47.826 0.00 0.00 34.70 2.08
388 403 1.484653 TCCACCATCTTACCCGTGATG 59.515 52.381 0.00 0.00 39.60 3.07
439 454 1.743252 GCCGCCTCTGGAACTTCAG 60.743 63.158 0.00 0.00 36.17 3.02
444 459 2.421619 GCCTCTGGAACTTCAGACTTG 58.578 52.381 0.00 0.00 38.70 3.16
461 476 5.290643 CAGACTTGCAAGCAGATAAGTACTC 59.709 44.000 26.27 11.28 33.83 2.59
462 477 4.508662 ACTTGCAAGCAGATAAGTACTCC 58.491 43.478 26.27 0.00 32.05 3.85
560 575 1.134530 CTCTCACGCACCGAACGATC 61.135 60.000 0.00 0.00 0.00 3.69
568 604 2.278857 CCGAACGATCCAGCGAGG 60.279 66.667 0.00 0.00 39.47 4.63
591 627 1.805945 GAAGAATGGTCGTCGCGCT 60.806 57.895 5.56 0.00 0.00 5.92
592 628 1.743855 GAAGAATGGTCGTCGCGCTC 61.744 60.000 5.56 0.00 0.00 5.03
593 629 3.607987 GAATGGTCGTCGCGCTCG 61.608 66.667 5.56 10.80 0.00 5.03
761 804 1.493772 TGCGACGATAATTAAGCCCG 58.506 50.000 0.00 0.00 0.00 6.13
816 859 2.184830 CATCCAGAGGTGCATGCCG 61.185 63.158 16.68 0.00 0.00 5.69
919 962 2.047274 ACACATCGCCGGGTTCTG 60.047 61.111 2.18 0.00 0.00 3.02
982 1029 3.243359 AGCTCCATTCCAAGTTTCCAA 57.757 42.857 0.00 0.00 0.00 3.53
1010 1057 1.129998 CAGAACAAAGATGGCGAGCAG 59.870 52.381 0.00 0.00 0.00 4.24
1013 1060 0.035317 ACAAAGATGGCGAGCAGACA 59.965 50.000 0.00 0.00 45.56 3.41
1884 1986 0.391130 CGAGGTTCTTCGATGGGCAA 60.391 55.000 0.00 0.00 43.03 4.52
1949 2051 1.270094 TGTTAACTGCGTCAGTCAGGG 60.270 52.381 11.92 0.00 44.62 4.45
1991 2093 0.986270 CGTGCGAATACTGCGTGTAA 59.014 50.000 0.00 0.00 34.45 2.41
1992 2094 1.387420 CGTGCGAATACTGCGTGTAAA 59.613 47.619 0.00 0.00 34.45 2.01
2073 3332 8.274322 AGATTGTATTTTGTGTATCCCAGATCA 58.726 33.333 0.00 0.00 0.00 2.92
2074 3333 7.624360 TTGTATTTTGTGTATCCCAGATCAC 57.376 36.000 0.00 0.00 0.00 3.06
2080 3339 3.701542 TGTGTATCCCAGATCACTCTGTC 59.298 47.826 0.00 0.00 46.33 3.51
2084 3343 5.772169 TGTATCCCAGATCACTCTGTCTATG 59.228 44.000 0.00 0.00 46.33 2.23
2106 3365 1.948104 TTTGCGTGTTCAGCACTACT 58.052 45.000 0.00 0.00 45.10 2.57
2112 3371 2.852413 CGTGTTCAGCACTACTATTCCG 59.148 50.000 0.00 0.00 45.57 4.30
2113 3372 3.187700 GTGTTCAGCACTACTATTCCGG 58.812 50.000 0.00 0.00 44.41 5.14
2127 3386 5.869579 ACTATTCCGGAATGATTGTGCTAT 58.130 37.500 34.93 11.47 32.50 2.97
2130 3389 3.664107 TCCGGAATGATTGTGCTATAGC 58.336 45.455 18.18 18.18 42.50 2.97
2133 3392 3.814842 CGGAATGATTGTGCTATAGCCAA 59.185 43.478 21.84 22.30 41.18 4.52
2136 3395 2.560504 TGATTGTGCTATAGCCAACCG 58.439 47.619 21.84 0.00 41.18 4.44
2137 3396 1.873591 GATTGTGCTATAGCCAACCGG 59.126 52.381 21.84 0.00 41.18 5.28
2241 3500 7.704789 ACGCTTTTATATTAGTTTACGGAGG 57.295 36.000 0.00 0.00 0.00 4.30
2242 3501 6.703165 ACGCTTTTATATTAGTTTACGGAGGG 59.297 38.462 0.00 0.00 0.00 4.30
2243 3502 6.925165 CGCTTTTATATTAGTTTACGGAGGGA 59.075 38.462 0.00 0.00 0.00 4.20
2244 3503 7.115947 CGCTTTTATATTAGTTTACGGAGGGAG 59.884 40.741 0.00 0.00 0.00 4.30
2245 3504 7.930325 GCTTTTATATTAGTTTACGGAGGGAGT 59.070 37.037 0.00 0.00 0.00 3.85
2257 3516 4.091549 ACGGAGGGAGTACTATTTGTGAA 58.908 43.478 0.00 0.00 0.00 3.18
2264 3523 4.395231 GGAGTACTATTTGTGAAGGCAACC 59.605 45.833 0.00 0.00 37.17 3.77
2272 3531 3.982829 GAAGGCAACCGTCTTCCC 58.017 61.111 0.00 0.00 46.28 3.97
2273 3532 1.674651 GAAGGCAACCGTCTTCCCC 60.675 63.158 0.00 0.00 46.28 4.81
2275 3534 4.011517 GGCAACCGTCTTCCCCGA 62.012 66.667 0.00 0.00 0.00 5.14
2276 3535 2.267961 GCAACCGTCTTCCCCGAT 59.732 61.111 0.00 0.00 0.00 4.18
2277 3536 2.106683 GCAACCGTCTTCCCCGATG 61.107 63.158 0.00 0.00 0.00 3.84
2278 3537 1.449601 CAACCGTCTTCCCCGATGG 60.450 63.158 0.00 0.00 44.09 3.51
2279 3538 2.284405 ACCGTCTTCCCCGATGGT 60.284 61.111 0.00 0.00 46.00 3.55
2280 3539 2.987125 CCGTCTTCCCCGATGGTT 59.013 61.111 0.00 0.00 35.73 3.67
2281 3540 1.449601 CCGTCTTCCCCGATGGTTG 60.450 63.158 0.00 0.00 35.73 3.77
2282 3541 1.295423 CGTCTTCCCCGATGGTTGT 59.705 57.895 0.00 0.00 34.77 3.32
2283 3542 1.019278 CGTCTTCCCCGATGGTTGTG 61.019 60.000 0.00 0.00 34.77 3.33
2284 3543 1.002624 TCTTCCCCGATGGTTGTGC 60.003 57.895 0.00 0.00 34.77 4.57
2285 3544 1.002134 CTTCCCCGATGGTTGTGCT 60.002 57.895 0.00 0.00 34.77 4.40
2286 3545 0.609131 CTTCCCCGATGGTTGTGCTT 60.609 55.000 0.00 0.00 34.77 3.91
2287 3546 0.693622 TTCCCCGATGGTTGTGCTTA 59.306 50.000 0.00 0.00 34.77 3.09
2288 3547 0.035820 TCCCCGATGGTTGTGCTTAC 60.036 55.000 0.00 0.00 34.77 2.34
2289 3548 0.322098 CCCCGATGGTTGTGCTTACA 60.322 55.000 0.00 0.00 0.00 2.41
2290 3549 1.529226 CCCGATGGTTGTGCTTACAA 58.471 50.000 0.00 0.00 0.00 2.41
2291 3550 1.199097 CCCGATGGTTGTGCTTACAAC 59.801 52.381 13.34 13.34 46.60 3.32
2292 3551 2.151202 CCGATGGTTGTGCTTACAACT 58.849 47.619 19.06 4.47 46.54 3.16
2293 3552 2.552315 CCGATGGTTGTGCTTACAACTT 59.448 45.455 19.06 9.93 46.54 2.66
2294 3553 3.749088 CCGATGGTTGTGCTTACAACTTA 59.251 43.478 19.06 11.34 46.54 2.24
2295 3554 4.378046 CCGATGGTTGTGCTTACAACTTAC 60.378 45.833 19.06 11.27 46.54 2.34
2296 3555 4.451096 CGATGGTTGTGCTTACAACTTACT 59.549 41.667 19.06 5.60 46.54 2.24
2297 3556 5.636121 CGATGGTTGTGCTTACAACTTACTA 59.364 40.000 19.06 5.65 46.54 1.82
2298 3557 6.400727 CGATGGTTGTGCTTACAACTTACTAC 60.401 42.308 19.06 5.89 46.54 2.73
2299 3558 5.920903 TGGTTGTGCTTACAACTTACTACT 58.079 37.500 19.06 0.00 46.54 2.57
2300 3559 5.756347 TGGTTGTGCTTACAACTTACTACTG 59.244 40.000 19.06 0.00 46.54 2.74
2301 3560 5.333875 GGTTGTGCTTACAACTTACTACTGC 60.334 44.000 19.06 0.66 46.54 4.40
2302 3561 5.209818 TGTGCTTACAACTTACTACTGCT 57.790 39.130 0.00 0.00 0.00 4.24
2303 3562 5.607477 TGTGCTTACAACTTACTACTGCTT 58.393 37.500 0.00 0.00 0.00 3.91
2304 3563 6.751157 TGTGCTTACAACTTACTACTGCTTA 58.249 36.000 0.00 0.00 0.00 3.09
2305 3564 6.643770 TGTGCTTACAACTTACTACTGCTTAC 59.356 38.462 0.00 0.00 0.00 2.34
2306 3565 6.090493 GTGCTTACAACTTACTACTGCTTACC 59.910 42.308 0.00 0.00 0.00 2.85
2307 3566 5.579904 GCTTACAACTTACTACTGCTTACCC 59.420 44.000 0.00 0.00 0.00 3.69
2308 3567 4.184079 ACAACTTACTACTGCTTACCCG 57.816 45.455 0.00 0.00 0.00 5.28
2309 3568 3.056322 ACAACTTACTACTGCTTACCCGG 60.056 47.826 0.00 0.00 0.00 5.73
2310 3569 3.091633 ACTTACTACTGCTTACCCGGA 57.908 47.619 0.73 0.00 0.00 5.14
2317 3576 0.464036 CTGCTTACCCGGACATAGCA 59.536 55.000 0.73 11.54 39.35 3.49
2327 3586 2.477825 CGGACATAGCAGGTCAATGAG 58.522 52.381 5.06 0.00 37.00 2.90
2329 3588 1.863454 GACATAGCAGGTCAATGAGCG 59.137 52.381 6.81 3.64 35.00 5.03
2332 3591 2.229675 TAGCAGGTCAATGAGCGATG 57.770 50.000 6.81 2.21 35.00 3.84
2335 3594 1.012086 CAGGTCAATGAGCGATGTGG 58.988 55.000 6.81 0.00 35.00 4.17
2338 3597 0.376152 GTCAATGAGCGATGTGGCTG 59.624 55.000 0.00 0.00 44.93 4.85
2341 3600 1.374343 AATGAGCGATGTGGCTGCAG 61.374 55.000 10.11 10.11 44.93 4.41
2389 3795 3.349927 CATCAAGAGGCAATCAAGTCCA 58.650 45.455 0.00 0.00 0.00 4.02
2390 3796 3.063510 TCAAGAGGCAATCAAGTCCAG 57.936 47.619 0.00 0.00 0.00 3.86
2400 3806 1.118965 TCAAGTCCAGTTCGAGGCCA 61.119 55.000 5.01 0.00 0.00 5.36
2422 3828 6.672147 CCAGTAACACAATTTCTTTCTCAGG 58.328 40.000 0.00 0.00 0.00 3.86
2423 3829 6.294176 CCAGTAACACAATTTCTTTCTCAGGG 60.294 42.308 0.00 0.00 0.00 4.45
2431 3837 8.981647 CACAATTTCTTTCTCAGGGTTATTTTG 58.018 33.333 0.00 0.00 0.00 2.44
2441 3847 7.936584 TCTCAGGGTTATTTTGTGTAAACAAG 58.063 34.615 0.00 0.00 0.00 3.16
2448 3854 7.655732 GGTTATTTTGTGTAAACAAGCTCCATT 59.344 33.333 0.00 0.00 0.00 3.16
2457 3863 6.756074 TGTAAACAAGCTCCATTTGAACTTTG 59.244 34.615 0.00 0.00 26.71 2.77
2458 3864 5.343307 AACAAGCTCCATTTGAACTTTGT 57.657 34.783 0.00 0.00 26.71 2.83
2464 3870 7.288810 AGCTCCATTTGAACTTTGTAATTGA 57.711 32.000 0.00 0.00 0.00 2.57
2471 3877 9.782028 CATTTGAACTTTGTAATTGACATTTCG 57.218 29.630 0.00 0.00 38.07 3.46
2476 3882 8.434870 AACTTTGTAATTGACATTTCGAATCG 57.565 30.769 0.00 0.00 38.07 3.34
2478 3884 8.073768 ACTTTGTAATTGACATTTCGAATCGTT 58.926 29.630 1.52 0.00 38.07 3.85
2479 3885 8.789881 TTTGTAATTGACATTTCGAATCGTTT 57.210 26.923 1.52 0.00 38.07 3.60
2488 3894 9.027129 TGACATTTCGAATCGTTTATACCTAAG 57.973 33.333 1.52 0.00 0.00 2.18
2489 3895 7.848491 ACATTTCGAATCGTTTATACCTAAGC 58.152 34.615 1.52 0.00 0.00 3.09
2495 3901 6.305877 CGAATCGTTTATACCTAAGCAGCTAG 59.694 42.308 0.00 0.00 0.00 3.42
2496 3902 6.651975 ATCGTTTATACCTAAGCAGCTAGT 57.348 37.500 0.00 0.00 0.00 2.57
2497 3903 6.069684 TCGTTTATACCTAAGCAGCTAGTC 57.930 41.667 0.00 0.00 0.00 2.59
2499 3905 5.009811 CGTTTATACCTAAGCAGCTAGTCCT 59.990 44.000 0.00 0.00 0.00 3.85
2505 3911 4.962995 ACCTAAGCAGCTAGTCCTCAATAA 59.037 41.667 0.00 0.00 0.00 1.40
2508 3914 6.426328 CCTAAGCAGCTAGTCCTCAATAATTG 59.574 42.308 0.00 0.00 0.00 2.32
2513 3919 8.213679 AGCAGCTAGTCCTCAATAATTGATTTA 58.786 33.333 0.00 0.00 39.30 1.40
2552 3958 1.402968 CCACCTCAGCATGTAACATGC 59.597 52.381 17.36 17.36 44.85 4.06
2553 3959 2.086094 CACCTCAGCATGTAACATGCA 58.914 47.619 23.27 4.33 46.77 3.96
2554 3960 2.686405 CACCTCAGCATGTAACATGCAT 59.314 45.455 23.27 6.74 46.77 3.96
2555 3961 3.878699 CACCTCAGCATGTAACATGCATA 59.121 43.478 23.27 14.07 46.77 3.14
2563 3969 6.259387 CAGCATGTAACATGCATAAGAAGAGA 59.741 38.462 23.27 0.00 46.77 3.10
2586 3992 5.181009 ACACATCTCAACATACAGTCATGG 58.819 41.667 0.00 0.00 0.00 3.66
2587 3993 5.181009 CACATCTCAACATACAGTCATGGT 58.819 41.667 0.00 0.00 0.00 3.55
2588 3994 5.645067 CACATCTCAACATACAGTCATGGTT 59.355 40.000 0.00 0.00 0.00 3.67
2605 4020 6.257630 GTCATGGTTTTAACTTGCAAACATGT 59.742 34.615 12.37 0.00 35.01 3.21
2608 4023 5.809562 TGGTTTTAACTTGCAAACATGTCTG 59.190 36.000 0.00 0.00 35.01 3.51
2612 4027 6.691754 TTAACTTGCAAACATGTCTGAGAA 57.308 33.333 2.56 0.00 33.33 2.87
2621 4036 6.647895 GCAAACATGTCTGAGAATTTCCATTT 59.352 34.615 2.56 0.00 0.00 2.32
2770 4187 9.814899 ACCAAATTTCATTCAAATATATCGCAA 57.185 25.926 0.00 0.00 33.16 4.85
2778 4195 9.800433 TCATTCAAATATATCGCAAAACATTGT 57.200 25.926 0.00 0.00 0.00 2.71
2780 4197 9.800433 ATTCAAATATATCGCAAAACATTGTCA 57.200 25.926 0.00 0.00 0.00 3.58
2781 4198 8.613613 TCAAATATATCGCAAAACATTGTCAC 57.386 30.769 0.00 0.00 0.00 3.67
2784 4201 7.969387 ATATATCGCAAAACATTGTCACAAC 57.031 32.000 0.00 0.00 0.00 3.32
2800 4217 4.032900 GTCACAACAACATGCTAGGTATCG 59.967 45.833 0.00 0.00 0.00 2.92
2801 4218 4.081917 TCACAACAACATGCTAGGTATCGA 60.082 41.667 0.00 0.00 0.00 3.59
2802 4219 4.268644 CACAACAACATGCTAGGTATCGAG 59.731 45.833 0.00 0.00 0.00 4.04
2845 4263 3.968649 GCAAATGTGCCATATAGTGTGG 58.031 45.455 0.00 0.00 45.68 4.17
2846 4264 3.243501 GCAAATGTGCCATATAGTGTGGG 60.244 47.826 0.00 0.00 45.68 4.61
2847 4265 3.951563 AATGTGCCATATAGTGTGGGT 57.048 42.857 0.00 0.00 37.22 4.51
2848 4266 2.708216 TGTGCCATATAGTGTGGGTG 57.292 50.000 0.00 0.00 37.22 4.61
2849 4267 1.912731 TGTGCCATATAGTGTGGGTGT 59.087 47.619 0.00 0.00 37.22 4.16
2850 4268 2.288666 GTGCCATATAGTGTGGGTGTG 58.711 52.381 0.00 0.00 37.22 3.82
2851 4269 1.211703 TGCCATATAGTGTGGGTGTGG 59.788 52.381 0.00 0.00 37.22 4.17
2852 4270 1.476833 GCCATATAGTGTGGGTGTGGG 60.477 57.143 0.00 0.00 37.22 4.61
2853 4271 1.843851 CCATATAGTGTGGGTGTGGGT 59.156 52.381 0.00 0.00 32.98 4.51
2854 4272 2.158813 CCATATAGTGTGGGTGTGGGTC 60.159 54.545 0.00 0.00 32.98 4.46
2855 4273 1.187974 TATAGTGTGGGTGTGGGTCG 58.812 55.000 0.00 0.00 0.00 4.79
2856 4274 1.550130 ATAGTGTGGGTGTGGGTCGG 61.550 60.000 0.00 0.00 0.00 4.79
2873 4291 2.983030 GCCACATGCACGGTCCAA 60.983 61.111 0.00 0.00 40.77 3.53
2874 4292 2.342650 GCCACATGCACGGTCCAAT 61.343 57.895 0.00 0.00 40.77 3.16
2875 4293 1.029408 GCCACATGCACGGTCCAATA 61.029 55.000 0.00 0.00 40.77 1.90
2876 4294 1.458398 CCACATGCACGGTCCAATAA 58.542 50.000 0.00 0.00 0.00 1.40
2877 4295 2.023673 CCACATGCACGGTCCAATAAT 58.976 47.619 0.00 0.00 0.00 1.28
2878 4296 2.223548 CCACATGCACGGTCCAATAATG 60.224 50.000 0.00 0.00 0.00 1.90
2879 4297 2.423185 CACATGCACGGTCCAATAATGT 59.577 45.455 0.00 0.00 0.00 2.71
2880 4298 3.088532 ACATGCACGGTCCAATAATGTT 58.911 40.909 0.00 0.00 0.00 2.71
2881 4299 3.128589 ACATGCACGGTCCAATAATGTTC 59.871 43.478 0.00 0.00 0.00 3.18
2882 4300 2.784347 TGCACGGTCCAATAATGTTCA 58.216 42.857 0.00 0.00 0.00 3.18
2883 4301 3.351740 TGCACGGTCCAATAATGTTCAT 58.648 40.909 0.00 0.00 0.00 2.57
2884 4302 3.761218 TGCACGGTCCAATAATGTTCATT 59.239 39.130 3.55 3.55 0.00 2.57
2885 4303 4.219507 TGCACGGTCCAATAATGTTCATTT 59.780 37.500 3.36 0.00 0.00 2.32
2886 4304 5.416013 TGCACGGTCCAATAATGTTCATTTA 59.584 36.000 3.36 0.00 0.00 1.40
2887 4305 6.096141 TGCACGGTCCAATAATGTTCATTTAT 59.904 34.615 3.36 0.00 0.00 1.40
2888 4306 7.283354 TGCACGGTCCAATAATGTTCATTTATA 59.717 33.333 3.36 0.00 0.00 0.98
2889 4307 8.296713 GCACGGTCCAATAATGTTCATTTATAT 58.703 33.333 3.36 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 154 3.468063 GGACAAGTCCGGGACTGT 58.532 61.111 29.37 25.82 42.59 3.55
286 301 3.004210 AGTTGTGCATTGTGACGCATAAA 59.996 39.130 0.00 0.00 40.29 1.40
328 343 0.537188 ATTTCGTCTGGATCGTGCCT 59.463 50.000 0.00 0.00 0.00 4.75
330 345 1.640428 TCATTTCGTCTGGATCGTGC 58.360 50.000 0.00 0.00 0.00 5.34
337 352 4.322801 GGATACCCCTATCATTTCGTCTGG 60.323 50.000 0.00 0.00 31.63 3.86
352 367 1.209747 GTGGAACTGAGTGGATACCCC 59.790 57.143 0.00 0.00 0.00 4.95
388 403 0.601311 AACGAACAGTGCTCTCCTGC 60.601 55.000 0.00 0.00 33.09 4.85
439 454 4.568760 GGAGTACTTATCTGCTTGCAAGTC 59.431 45.833 26.55 18.78 33.47 3.01
444 459 3.166489 ACGGAGTACTTATCTGCTTGC 57.834 47.619 0.00 0.00 41.94 4.01
461 476 2.737783 TGACCAAATTTGCTACGTACGG 59.262 45.455 21.06 3.45 0.00 4.02
462 477 4.593597 ATGACCAAATTTGCTACGTACG 57.406 40.909 15.01 15.01 0.00 3.67
560 575 0.539051 ATTCTTCCTGTCCTCGCTGG 59.461 55.000 0.00 0.00 37.10 4.85
568 604 1.630148 CGACGACCATTCTTCCTGTC 58.370 55.000 0.00 0.00 0.00 3.51
599 635 2.413437 ATCTCGCGCCCAATCTCTCG 62.413 60.000 0.00 0.00 0.00 4.04
600 636 0.943359 CATCTCGCGCCCAATCTCTC 60.943 60.000 0.00 0.00 0.00 3.20
601 637 1.068753 CATCTCGCGCCCAATCTCT 59.931 57.895 0.00 0.00 0.00 3.10
604 640 2.537560 CCACATCTCGCGCCCAATC 61.538 63.158 0.00 0.00 0.00 2.67
816 859 3.723348 GCCGTCGCAAGTTGACCC 61.723 66.667 7.16 0.00 39.48 4.46
906 949 4.473520 CCAGCAGAACCCGGCGAT 62.474 66.667 9.30 0.00 38.54 4.58
919 962 3.446161 TGGTCCGTGTATATATAGCCAGC 59.554 47.826 0.00 0.00 0.00 4.85
982 1029 3.319122 GCCATCTTTGTTCTGTTGGAAGT 59.681 43.478 0.00 0.00 34.23 3.01
1010 1057 0.109597 CAGCATTGCCGGAAACTGTC 60.110 55.000 5.05 0.00 0.00 3.51
1013 1060 2.964978 GCAGCATTGCCGGAAACT 59.035 55.556 5.05 0.00 44.74 2.66
1146 1196 3.307782 CCACGTTGACGAACTTGTAGTTT 59.692 43.478 10.87 0.00 38.80 2.66
1884 1986 0.107848 CCTTATCGCTGAACCCCGTT 60.108 55.000 0.00 0.00 0.00 4.44
1949 2051 1.715585 CATGTTGATCGGACGTGCC 59.284 57.895 0.00 0.00 0.00 5.01
2073 3332 2.738846 CACGCAAAAGCATAGACAGAGT 59.261 45.455 0.00 0.00 0.00 3.24
2074 3333 2.738846 ACACGCAAAAGCATAGACAGAG 59.261 45.455 0.00 0.00 0.00 3.35
2078 3337 3.482786 CTGAACACGCAAAAGCATAGAC 58.517 45.455 0.00 0.00 0.00 2.59
2080 3339 2.245096 GCTGAACACGCAAAAGCATAG 58.755 47.619 0.00 0.00 34.01 2.23
2084 3343 2.207177 GTGCTGAACACGCAAAAGC 58.793 52.632 0.00 0.00 40.07 3.51
2094 3353 3.795623 TCCGGAATAGTAGTGCTGAAC 57.204 47.619 0.00 0.00 0.00 3.18
2096 3355 3.958147 TCATTCCGGAATAGTAGTGCTGA 59.042 43.478 28.76 17.15 0.00 4.26
2098 3357 5.163301 ACAATCATTCCGGAATAGTAGTGCT 60.163 40.000 28.76 6.56 0.00 4.40
2099 3358 5.050091 CACAATCATTCCGGAATAGTAGTGC 60.050 44.000 28.76 0.00 0.00 4.40
2106 3365 5.874810 GCTATAGCACAATCATTCCGGAATA 59.125 40.000 28.76 17.16 41.59 1.75
2112 3371 4.022849 GGTTGGCTATAGCACAATCATTCC 60.023 45.833 25.53 17.48 44.36 3.01
2113 3372 4.319766 CGGTTGGCTATAGCACAATCATTC 60.320 45.833 25.53 13.48 44.36 2.67
2127 3386 3.602483 GAAGTATTCAACCGGTTGGCTA 58.398 45.455 39.46 28.64 46.62 3.93
2215 3474 8.606602 CCTCCGTAAACTAATATAAAAGCGTTT 58.393 33.333 2.53 2.53 0.00 3.60
2216 3475 7.225341 CCCTCCGTAAACTAATATAAAAGCGTT 59.775 37.037 0.00 0.00 0.00 4.84
2217 3476 6.703165 CCCTCCGTAAACTAATATAAAAGCGT 59.297 38.462 0.00 0.00 0.00 5.07
2218 3477 6.925165 TCCCTCCGTAAACTAATATAAAAGCG 59.075 38.462 0.00 0.00 0.00 4.68
2219 3478 7.930325 ACTCCCTCCGTAAACTAATATAAAAGC 59.070 37.037 0.00 0.00 0.00 3.51
2222 3481 9.646522 AGTACTCCCTCCGTAAACTAATATAAA 57.353 33.333 0.00 0.00 0.00 1.40
2225 3484 9.819754 AATAGTACTCCCTCCGTAAACTAATAT 57.180 33.333 0.00 0.00 0.00 1.28
2226 3485 9.646522 AAATAGTACTCCCTCCGTAAACTAATA 57.353 33.333 0.00 0.00 0.00 0.98
2227 3486 8.419442 CAAATAGTACTCCCTCCGTAAACTAAT 58.581 37.037 0.00 0.00 0.00 1.73
2228 3487 7.397192 ACAAATAGTACTCCCTCCGTAAACTAA 59.603 37.037 0.00 0.00 0.00 2.24
2229 3488 6.891908 ACAAATAGTACTCCCTCCGTAAACTA 59.108 38.462 0.00 0.00 0.00 2.24
2230 3489 5.718607 ACAAATAGTACTCCCTCCGTAAACT 59.281 40.000 0.00 0.00 0.00 2.66
2231 3490 5.809051 CACAAATAGTACTCCCTCCGTAAAC 59.191 44.000 0.00 0.00 0.00 2.01
2232 3491 5.716228 TCACAAATAGTACTCCCTCCGTAAA 59.284 40.000 0.00 0.00 0.00 2.01
2233 3492 5.263599 TCACAAATAGTACTCCCTCCGTAA 58.736 41.667 0.00 0.00 0.00 3.18
2234 3493 4.858850 TCACAAATAGTACTCCCTCCGTA 58.141 43.478 0.00 0.00 0.00 4.02
2235 3494 3.705051 TCACAAATAGTACTCCCTCCGT 58.295 45.455 0.00 0.00 0.00 4.69
2236 3495 4.441634 CCTTCACAAATAGTACTCCCTCCG 60.442 50.000 0.00 0.00 0.00 4.63
2237 3496 4.683671 GCCTTCACAAATAGTACTCCCTCC 60.684 50.000 0.00 0.00 0.00 4.30
2238 3497 4.081087 TGCCTTCACAAATAGTACTCCCTC 60.081 45.833 0.00 0.00 0.00 4.30
2239 3498 3.844211 TGCCTTCACAAATAGTACTCCCT 59.156 43.478 0.00 0.00 0.00 4.20
2240 3499 4.216411 TGCCTTCACAAATAGTACTCCC 57.784 45.455 0.00 0.00 0.00 4.30
2241 3500 4.395231 GGTTGCCTTCACAAATAGTACTCC 59.605 45.833 0.00 0.00 0.00 3.85
2242 3501 4.092968 CGGTTGCCTTCACAAATAGTACTC 59.907 45.833 0.00 0.00 0.00 2.59
2243 3502 4.000988 CGGTTGCCTTCACAAATAGTACT 58.999 43.478 0.00 0.00 0.00 2.73
2244 3503 3.749609 ACGGTTGCCTTCACAAATAGTAC 59.250 43.478 0.00 0.00 0.00 2.73
2245 3504 3.998341 GACGGTTGCCTTCACAAATAGTA 59.002 43.478 0.00 0.00 0.00 1.82
2246 3505 2.812011 GACGGTTGCCTTCACAAATAGT 59.188 45.455 0.00 0.00 0.00 2.12
2247 3506 3.074412 AGACGGTTGCCTTCACAAATAG 58.926 45.455 0.00 0.00 0.00 1.73
2257 3516 4.016706 CGGGGAAGACGGTTGCCT 62.017 66.667 9.65 0.00 0.00 4.75
2264 3523 1.019278 CACAACCATCGGGGAAGACG 61.019 60.000 0.84 0.00 41.15 4.18
2279 3538 5.607477 AGCAGTAGTAAGTTGTAAGCACAA 58.393 37.500 0.00 0.00 42.39 3.33
2280 3539 5.209818 AGCAGTAGTAAGTTGTAAGCACA 57.790 39.130 0.00 0.00 0.00 4.57
2281 3540 6.090493 GGTAAGCAGTAGTAAGTTGTAAGCAC 59.910 42.308 0.00 0.00 0.00 4.40
2282 3541 6.161381 GGTAAGCAGTAGTAAGTTGTAAGCA 58.839 40.000 0.00 0.00 0.00 3.91
2283 3542 5.579904 GGGTAAGCAGTAGTAAGTTGTAAGC 59.420 44.000 0.00 0.00 0.00 3.09
2284 3543 5.803967 CGGGTAAGCAGTAGTAAGTTGTAAG 59.196 44.000 0.00 0.00 0.00 2.34
2285 3544 5.336690 CCGGGTAAGCAGTAGTAAGTTGTAA 60.337 44.000 0.00 0.00 0.00 2.41
2286 3545 4.158394 CCGGGTAAGCAGTAGTAAGTTGTA 59.842 45.833 0.00 0.00 0.00 2.41
2287 3546 3.056322 CCGGGTAAGCAGTAGTAAGTTGT 60.056 47.826 0.00 0.00 0.00 3.32
2288 3547 3.194116 TCCGGGTAAGCAGTAGTAAGTTG 59.806 47.826 0.00 0.00 0.00 3.16
2289 3548 3.194329 GTCCGGGTAAGCAGTAGTAAGTT 59.806 47.826 0.00 0.00 0.00 2.66
2290 3549 2.757314 GTCCGGGTAAGCAGTAGTAAGT 59.243 50.000 0.00 0.00 0.00 2.24
2291 3550 2.756760 TGTCCGGGTAAGCAGTAGTAAG 59.243 50.000 0.00 0.00 0.00 2.34
2292 3551 2.806434 TGTCCGGGTAAGCAGTAGTAA 58.194 47.619 0.00 0.00 0.00 2.24
2293 3552 2.512692 TGTCCGGGTAAGCAGTAGTA 57.487 50.000 0.00 0.00 0.00 1.82
2294 3553 1.861982 ATGTCCGGGTAAGCAGTAGT 58.138 50.000 0.00 0.00 0.00 2.73
2295 3554 2.288273 GCTATGTCCGGGTAAGCAGTAG 60.288 54.545 0.00 0.00 33.38 2.57
2296 3555 1.684983 GCTATGTCCGGGTAAGCAGTA 59.315 52.381 0.00 0.00 33.38 2.74
2297 3556 0.464452 GCTATGTCCGGGTAAGCAGT 59.536 55.000 0.00 0.00 33.38 4.40
2298 3557 0.464036 TGCTATGTCCGGGTAAGCAG 59.536 55.000 14.85 2.00 38.22 4.24
2299 3558 0.464036 CTGCTATGTCCGGGTAAGCA 59.536 55.000 16.94 16.94 40.68 3.91
2300 3559 0.249911 CCTGCTATGTCCGGGTAAGC 60.250 60.000 0.00 6.84 0.00 3.09
2301 3560 1.068741 GACCTGCTATGTCCGGGTAAG 59.931 57.143 0.00 0.00 41.93 2.34
2302 3561 1.117150 GACCTGCTATGTCCGGGTAA 58.883 55.000 0.00 0.00 41.93 2.85
2303 3562 0.032912 TGACCTGCTATGTCCGGGTA 60.033 55.000 0.00 0.00 41.93 3.69
2304 3563 0.907704 TTGACCTGCTATGTCCGGGT 60.908 55.000 0.00 0.00 44.48 5.28
2305 3564 0.469917 ATTGACCTGCTATGTCCGGG 59.530 55.000 0.00 0.00 34.80 5.73
2306 3565 1.138859 TCATTGACCTGCTATGTCCGG 59.861 52.381 0.00 0.00 32.54 5.14
2307 3566 2.477825 CTCATTGACCTGCTATGTCCG 58.522 52.381 0.00 0.00 32.54 4.79
2308 3567 2.216898 GCTCATTGACCTGCTATGTCC 58.783 52.381 0.00 0.00 32.54 4.02
2309 3568 1.863454 CGCTCATTGACCTGCTATGTC 59.137 52.381 0.00 0.00 32.54 3.06
2310 3569 1.482182 TCGCTCATTGACCTGCTATGT 59.518 47.619 0.00 0.00 32.54 2.29
2317 3576 0.745845 GCCACATCGCTCATTGACCT 60.746 55.000 0.00 0.00 0.00 3.85
2327 3586 0.740868 TTCTACTGCAGCCACATCGC 60.741 55.000 15.27 0.00 0.00 4.58
2329 3588 1.734465 GTGTTCTACTGCAGCCACATC 59.266 52.381 15.27 0.99 0.00 3.06
2332 3591 0.250295 TGGTGTTCTACTGCAGCCAC 60.250 55.000 15.27 12.36 32.72 5.01
2335 3594 1.532868 CAACTGGTGTTCTACTGCAGC 59.467 52.381 15.27 0.00 33.52 5.25
2338 3597 0.875059 GGCAACTGGTGTTCTACTGC 59.125 55.000 0.00 0.00 33.52 4.40
2341 3600 1.589803 AACGGCAACTGGTGTTCTAC 58.410 50.000 0.00 0.00 33.52 2.59
2389 3795 1.045407 TGTGTTACTGGCCTCGAACT 58.955 50.000 3.32 0.00 0.00 3.01
2390 3796 1.873698 TTGTGTTACTGGCCTCGAAC 58.126 50.000 3.32 5.78 0.00 3.95
2400 3806 6.365520 ACCCTGAGAAAGAAATTGTGTTACT 58.634 36.000 0.00 0.00 0.00 2.24
2422 3828 6.508777 TGGAGCTTGTTTACACAAAATAACC 58.491 36.000 0.00 0.00 42.53 2.85
2423 3829 8.587952 AATGGAGCTTGTTTACACAAAATAAC 57.412 30.769 0.00 0.00 42.53 1.89
2431 3837 5.831997 AGTTCAAATGGAGCTTGTTTACAC 58.168 37.500 0.00 0.00 32.54 2.90
2441 3847 6.922957 TGTCAATTACAAAGTTCAAATGGAGC 59.077 34.615 0.00 0.00 34.29 4.70
2448 3854 9.743057 ATTCGAAATGTCAATTACAAAGTTCAA 57.257 25.926 0.00 0.00 42.70 2.69
2464 3870 7.493320 TGCTTAGGTATAAACGATTCGAAATGT 59.507 33.333 13.95 0.12 0.00 2.71
2471 3877 7.146648 ACTAGCTGCTTAGGTATAAACGATTC 58.853 38.462 7.79 0.00 0.00 2.52
2476 3882 6.040616 TGAGGACTAGCTGCTTAGGTATAAAC 59.959 42.308 7.79 0.00 0.00 2.01
2478 3884 5.702266 TGAGGACTAGCTGCTTAGGTATAA 58.298 41.667 7.79 0.00 0.00 0.98
2479 3885 5.320488 TGAGGACTAGCTGCTTAGGTATA 57.680 43.478 7.79 0.00 0.00 1.47
2482 3888 2.534042 TGAGGACTAGCTGCTTAGGT 57.466 50.000 7.79 4.85 0.00 3.08
2483 3889 5.537300 TTATTGAGGACTAGCTGCTTAGG 57.463 43.478 7.79 1.29 0.00 2.69
2488 3894 6.874288 AATCAATTATTGAGGACTAGCTGC 57.126 37.500 13.29 0.00 43.98 5.25
2513 3919 7.123997 TGAGGTGGCATATTTACATGTTGAAAT 59.876 33.333 2.30 7.75 0.00 2.17
2524 3930 4.169059 ACATGCTGAGGTGGCATATTTA 57.831 40.909 0.00 0.00 46.94 1.40
2527 3933 3.117926 TGTTACATGCTGAGGTGGCATAT 60.118 43.478 0.00 0.00 46.94 1.78
2532 3938 1.402968 GCATGTTACATGCTGAGGTGG 59.597 52.381 34.61 6.17 41.52 4.61
2563 3969 5.181009 CCATGACTGTATGTTGAGATGTGT 58.819 41.667 0.00 0.00 0.00 3.72
2580 3986 6.257630 ACATGTTTGCAAGTTAAAACCATGAC 59.742 34.615 19.07 0.00 35.80 3.06
2586 3992 6.972328 TCTCAGACATGTTTGCAAGTTAAAAC 59.028 34.615 11.43 6.45 36.92 2.43
2587 3993 7.094508 TCTCAGACATGTTTGCAAGTTAAAA 57.905 32.000 11.43 0.00 0.00 1.52
2588 3994 6.691754 TCTCAGACATGTTTGCAAGTTAAA 57.308 33.333 11.43 0.00 0.00 1.52
2760 4177 7.534282 TGTTGTGACAATGTTTTGCGATATAT 58.466 30.769 0.00 0.00 36.22 0.86
2770 4187 4.757594 AGCATGTTGTTGTGACAATGTTT 58.242 34.783 0.00 0.00 46.63 2.83
2777 4194 4.032900 CGATACCTAGCATGTTGTTGTGAC 59.967 45.833 0.00 0.00 0.00 3.67
2778 4195 4.081917 TCGATACCTAGCATGTTGTTGTGA 60.082 41.667 0.00 0.00 0.00 3.58
2780 4197 4.081642 ACTCGATACCTAGCATGTTGTTGT 60.082 41.667 0.00 0.00 0.00 3.32
2781 4198 4.433615 ACTCGATACCTAGCATGTTGTTG 58.566 43.478 0.00 0.00 0.00 3.33
2784 4201 7.534085 TTTAAACTCGATACCTAGCATGTTG 57.466 36.000 0.00 0.00 0.00 3.33
2793 4210 8.411683 CCACAGTACTATTTAAACTCGATACCT 58.588 37.037 0.00 0.00 0.00 3.08
2800 4217 6.403309 GCTTGGCCACAGTACTATTTAAACTC 60.403 42.308 3.88 0.00 0.00 3.01
2801 4218 5.414765 GCTTGGCCACAGTACTATTTAAACT 59.585 40.000 3.88 0.00 0.00 2.66
2802 4219 5.182380 TGCTTGGCCACAGTACTATTTAAAC 59.818 40.000 3.88 0.00 0.00 2.01
2814 4232 0.947180 GCACATTTGCTTGGCCACAG 60.947 55.000 3.88 7.83 46.17 3.66
2833 4251 1.843851 ACCCACACCCACACTATATGG 59.156 52.381 0.00 0.00 36.94 2.74
2834 4252 2.483013 CGACCCACACCCACACTATATG 60.483 54.545 0.00 0.00 0.00 1.78
2835 4253 1.760613 CGACCCACACCCACACTATAT 59.239 52.381 0.00 0.00 0.00 0.86
2836 4254 1.187974 CGACCCACACCCACACTATA 58.812 55.000 0.00 0.00 0.00 1.31
2837 4255 1.550130 CCGACCCACACCCACACTAT 61.550 60.000 0.00 0.00 0.00 2.12
2838 4256 2.211410 CCGACCCACACCCACACTA 61.211 63.158 0.00 0.00 0.00 2.74
2839 4257 3.556306 CCGACCCACACCCACACT 61.556 66.667 0.00 0.00 0.00 3.55
2856 4274 1.029408 TATTGGACCGTGCATGTGGC 61.029 55.000 4.96 0.00 45.13 5.01
2857 4275 1.458398 TTATTGGACCGTGCATGTGG 58.542 50.000 4.96 3.02 0.00 4.17
2858 4276 2.423185 ACATTATTGGACCGTGCATGTG 59.577 45.455 4.96 0.00 0.00 3.21
2859 4277 2.722094 ACATTATTGGACCGTGCATGT 58.278 42.857 4.96 0.00 0.00 3.21
2860 4278 3.128415 TGAACATTATTGGACCGTGCATG 59.872 43.478 0.00 0.00 0.00 4.06
2861 4279 3.351740 TGAACATTATTGGACCGTGCAT 58.648 40.909 0.00 0.00 0.00 3.96
2862 4280 2.784347 TGAACATTATTGGACCGTGCA 58.216 42.857 0.00 0.00 0.00 4.57
2863 4281 4.370364 AATGAACATTATTGGACCGTGC 57.630 40.909 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.