Multiple sequence alignment - TraesCS3D01G366000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G366000 chr3D 100.000 2894 0 0 1 2894 480357010 480359903 0.000000e+00 5345
1 TraesCS3D01G366000 chr3D 93.655 1907 109 9 994 2894 480157922 480159822 0.000000e+00 2841
2 TraesCS3D01G366000 chr3D 89.460 1537 112 21 778 2303 480366528 480368025 0.000000e+00 1895
3 TraesCS3D01G366000 chr3D 93.505 1124 63 4 778 1895 480375596 480376715 0.000000e+00 1663
4 TraesCS3D01G366000 chr3D 89.261 568 57 4 2302 2868 480371394 480371958 0.000000e+00 708
5 TraesCS3D01G366000 chr3D 83.830 705 73 15 2198 2894 480311094 480311765 1.460000e-177 632
6 TraesCS3D01G366000 chr3D 86.408 412 43 7 1996 2399 480310690 480311096 3.420000e-119 438
7 TraesCS3D01G366000 chr3D 87.654 243 29 1 3 245 170800996 170800755 6.110000e-72 281
8 TraesCS3D01G366000 chr3A 92.182 2136 142 13 778 2894 623362028 623364157 0.000000e+00 2996
9 TraesCS3D01G366000 chr3A 90.986 2119 145 21 792 2894 623354300 623356388 0.000000e+00 2813
10 TraesCS3D01G366000 chr3A 91.050 2067 143 25 834 2894 623229455 623231485 0.000000e+00 2754
11 TraesCS3D01G366000 chr3A 91.366 1332 99 6 986 2309 623340348 623341671 0.000000e+00 1808
12 TraesCS3D01G366000 chr3A 86.219 566 50 6 2307 2870 623341908 623342447 3.210000e-164 588
13 TraesCS3D01G366000 chr3B 91.145 2044 146 22 865 2894 640693399 640695421 0.000000e+00 2739
14 TraesCS3D01G366000 chr3B 89.227 2135 182 20 778 2894 640700485 640702589 0.000000e+00 2625
15 TraesCS3D01G366000 chr3B 89.024 1977 129 41 354 2307 640707722 640709633 0.000000e+00 2368
16 TraesCS3D01G366000 chr3B 90.323 341 31 2 2531 2870 640766043 640766382 2.050000e-121 446
17 TraesCS3D01G366000 chr4D 88.664 247 21 2 3 243 479408407 479408652 7.840000e-76 294
18 TraesCS3D01G366000 chr6D 87.449 247 25 3 3 243 414263588 414263342 2.200000e-71 279
19 TraesCS3D01G366000 chr6D 86.585 246 31 1 3 246 372770277 372770032 1.320000e-68 270
20 TraesCS3D01G366000 chr2D 86.454 251 26 6 3 247 306336669 306336421 4.750000e-68 268
21 TraesCS3D01G366000 chr2D 86.122 245 30 2 3 243 544581212 544581456 7.950000e-66 261
22 TraesCS3D01G366000 chr1D 86.400 250 27 2 3 246 447062276 447062028 1.710000e-67 267
23 TraesCS3D01G366000 chr5D 86.179 246 28 5 3 242 455611242 455611487 7.950000e-66 261
24 TraesCS3D01G366000 chr7D 85.542 249 28 5 3 243 387381855 387382103 1.330000e-63 254


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G366000 chr3D 480357010 480359903 2893 False 5345 5345 100.0000 1 2894 1 chr3D.!!$F2 2893
1 TraesCS3D01G366000 chr3D 480157922 480159822 1900 False 2841 2841 93.6550 994 2894 1 chr3D.!!$F1 1900
2 TraesCS3D01G366000 chr3D 480366528 480376715 10187 False 1422 1895 90.7420 778 2868 3 chr3D.!!$F4 2090
3 TraesCS3D01G366000 chr3D 480310690 480311765 1075 False 535 632 85.1190 1996 2894 2 chr3D.!!$F3 898
4 TraesCS3D01G366000 chr3A 623362028 623364157 2129 False 2996 2996 92.1820 778 2894 1 chr3A.!!$F3 2116
5 TraesCS3D01G366000 chr3A 623354300 623356388 2088 False 2813 2813 90.9860 792 2894 1 chr3A.!!$F2 2102
6 TraesCS3D01G366000 chr3A 623229455 623231485 2030 False 2754 2754 91.0500 834 2894 1 chr3A.!!$F1 2060
7 TraesCS3D01G366000 chr3A 623340348 623342447 2099 False 1198 1808 88.7925 986 2870 2 chr3A.!!$F4 1884
8 TraesCS3D01G366000 chr3B 640693399 640695421 2022 False 2739 2739 91.1450 865 2894 1 chr3B.!!$F1 2029
9 TraesCS3D01G366000 chr3B 640700485 640702589 2104 False 2625 2625 89.2270 778 2894 1 chr3B.!!$F2 2116
10 TraesCS3D01G366000 chr3B 640707722 640709633 1911 False 2368 2368 89.0240 354 2307 1 chr3B.!!$F3 1953

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.026803 GTCTGCATCGACGCAAATCC 59.973 55.0 7.86 0.0 42.45 3.01 F
326 327 0.033601 TTGACGCTGGGGCCATATTT 60.034 50.0 4.39 0.0 34.44 1.40 F
327 328 0.033601 TGACGCTGGGGCCATATTTT 60.034 50.0 4.39 0.0 34.44 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1597 1640 0.746063 ACCCACACGTAGTCGAACAA 59.254 50.000 0.0 0.0 41.61 2.83 R
1698 1741 2.687566 AAGATCTTCCCCGCCGGT 60.688 61.111 1.9 0.0 0.00 5.28 R
2028 2077 5.938125 GGACTTGGCTCAAAGAAACTATACA 59.062 40.000 2.1 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.194326 GCTGGATGGGAAGAGGGC 59.806 66.667 0.00 0.00 0.00 5.19
18 19 2.683465 GCTGGATGGGAAGAGGGCA 61.683 63.158 0.00 0.00 0.00 5.36
19 20 2.001803 CTGGATGGGAAGAGGGCAA 58.998 57.895 0.00 0.00 0.00 4.52
20 21 0.554792 CTGGATGGGAAGAGGGCAAT 59.445 55.000 0.00 0.00 0.00 3.56
21 22 0.259647 TGGATGGGAAGAGGGCAATG 59.740 55.000 0.00 0.00 0.00 2.82
22 23 0.259938 GGATGGGAAGAGGGCAATGT 59.740 55.000 0.00 0.00 0.00 2.71
23 24 1.396653 GATGGGAAGAGGGCAATGTG 58.603 55.000 0.00 0.00 0.00 3.21
24 25 0.685458 ATGGGAAGAGGGCAATGTGC 60.685 55.000 0.00 0.00 44.08 4.57
33 34 2.983030 GCAATGTGCCACCGACCA 60.983 61.111 0.00 0.00 37.42 4.02
34 35 2.981560 GCAATGTGCCACCGACCAG 61.982 63.158 0.00 0.00 37.42 4.00
35 36 2.672996 AATGTGCCACCGACCAGC 60.673 61.111 0.00 0.00 0.00 4.85
57 58 3.157949 CCGAGGAGGGAAGAGGGC 61.158 72.222 0.00 0.00 35.97 5.19
58 59 3.532155 CGAGGAGGGAAGAGGGCG 61.532 72.222 0.00 0.00 0.00 6.13
59 60 3.855853 GAGGAGGGAAGAGGGCGC 61.856 72.222 0.00 0.00 0.00 6.53
78 79 4.086178 CGCGTCCGTCTCGTGTCT 62.086 66.667 0.00 0.00 34.71 3.41
79 80 2.502080 GCGTCCGTCTCGTGTCTG 60.502 66.667 0.00 0.00 0.00 3.51
80 81 2.502080 CGTCCGTCTCGTGTCTGC 60.502 66.667 0.00 0.00 0.00 4.26
81 82 2.643272 GTCCGTCTCGTGTCTGCA 59.357 61.111 0.00 0.00 0.00 4.41
82 83 1.213013 GTCCGTCTCGTGTCTGCAT 59.787 57.895 0.00 0.00 0.00 3.96
83 84 0.798771 GTCCGTCTCGTGTCTGCATC 60.799 60.000 0.00 0.00 0.00 3.91
84 85 1.869574 CCGTCTCGTGTCTGCATCG 60.870 63.158 0.00 0.00 0.00 3.84
85 86 1.134694 CGTCTCGTGTCTGCATCGA 59.865 57.895 0.00 0.00 0.00 3.59
86 87 1.128724 CGTCTCGTGTCTGCATCGAC 61.129 60.000 0.00 0.00 34.52 4.20
87 88 1.128724 GTCTCGTGTCTGCATCGACG 61.129 60.000 5.43 5.43 36.71 5.12
88 89 2.500442 CTCGTGTCTGCATCGACGC 61.500 63.158 9.07 9.07 40.18 5.19
89 90 2.804931 CGTGTCTGCATCGACGCA 60.805 61.111 5.84 5.84 42.89 5.24
90 91 2.371923 CGTGTCTGCATCGACGCAA 61.372 57.895 7.86 0.00 42.89 4.85
91 92 1.859398 GTGTCTGCATCGACGCAAA 59.141 52.632 7.86 0.00 42.45 3.68
92 93 0.443869 GTGTCTGCATCGACGCAAAT 59.556 50.000 7.86 0.00 42.45 2.32
93 94 0.721154 TGTCTGCATCGACGCAAATC 59.279 50.000 7.86 1.48 42.45 2.17
94 95 0.026803 GTCTGCATCGACGCAAATCC 59.973 55.000 7.86 0.00 42.45 3.01
95 96 1.011904 CTGCATCGACGCAAATCCG 60.012 57.895 7.86 0.00 42.45 4.18
96 97 1.420641 CTGCATCGACGCAAATCCGA 61.421 55.000 7.86 0.00 42.45 4.55
97 98 1.012234 GCATCGACGCAAATCCGAC 60.012 57.895 0.00 0.00 35.02 4.79
98 99 1.421410 GCATCGACGCAAATCCGACT 61.421 55.000 0.00 0.00 35.02 4.18
99 100 0.999406 CATCGACGCAAATCCGACTT 59.001 50.000 0.00 0.00 35.02 3.01
100 101 2.190161 CATCGACGCAAATCCGACTTA 58.810 47.619 0.00 0.00 35.02 2.24
101 102 2.350899 TCGACGCAAATCCGACTTAA 57.649 45.000 0.00 0.00 0.00 1.85
102 103 2.674954 TCGACGCAAATCCGACTTAAA 58.325 42.857 0.00 0.00 0.00 1.52
103 104 3.058450 TCGACGCAAATCCGACTTAAAA 58.942 40.909 0.00 0.00 0.00 1.52
104 105 3.493877 TCGACGCAAATCCGACTTAAAAA 59.506 39.130 0.00 0.00 0.00 1.94
105 106 4.152759 TCGACGCAAATCCGACTTAAAAAT 59.847 37.500 0.00 0.00 0.00 1.82
106 107 4.259734 CGACGCAAATCCGACTTAAAAATG 59.740 41.667 0.00 0.00 0.00 2.32
107 108 4.481463 ACGCAAATCCGACTTAAAAATGG 58.519 39.130 0.00 0.00 0.00 3.16
108 109 3.857093 CGCAAATCCGACTTAAAAATGGG 59.143 43.478 0.00 0.00 0.00 4.00
109 110 4.617298 CGCAAATCCGACTTAAAAATGGGT 60.617 41.667 0.00 0.00 0.00 4.51
110 111 4.862574 GCAAATCCGACTTAAAAATGGGTC 59.137 41.667 0.00 0.00 0.00 4.46
114 115 2.702261 CGACTTAAAAATGGGTCGGGA 58.298 47.619 0.00 0.00 44.92 5.14
115 116 3.075884 CGACTTAAAAATGGGTCGGGAA 58.924 45.455 0.00 0.00 44.92 3.97
116 117 3.692593 CGACTTAAAAATGGGTCGGGAAT 59.307 43.478 0.00 0.00 44.92 3.01
117 118 4.438200 CGACTTAAAAATGGGTCGGGAATG 60.438 45.833 0.00 0.00 44.92 2.67
118 119 3.767131 ACTTAAAAATGGGTCGGGAATGG 59.233 43.478 0.00 0.00 0.00 3.16
119 120 2.614134 AAAAATGGGTCGGGAATGGA 57.386 45.000 0.00 0.00 0.00 3.41
120 121 2.846665 AAAATGGGTCGGGAATGGAT 57.153 45.000 0.00 0.00 0.00 3.41
121 122 2.071778 AAATGGGTCGGGAATGGATG 57.928 50.000 0.00 0.00 0.00 3.51
122 123 0.468029 AATGGGTCGGGAATGGATGC 60.468 55.000 0.00 0.00 0.00 3.91
123 124 2.203351 GGGTCGGGAATGGATGCC 60.203 66.667 0.00 0.00 35.86 4.40
124 125 2.203351 GGTCGGGAATGGATGCCC 60.203 66.667 0.00 0.00 41.11 5.36
125 126 2.203351 GTCGGGAATGGATGCCCC 60.203 66.667 0.00 0.00 41.50 5.80
130 131 4.562425 GAATGGATGCCCCGCGGA 62.562 66.667 30.73 7.23 37.93 5.54
131 132 4.875713 AATGGATGCCCCGCGGAC 62.876 66.667 30.73 19.45 37.93 4.79
136 137 4.708386 ATGCCCCGCGGACGAAAA 62.708 61.111 30.73 6.01 43.93 2.29
157 158 4.520846 GGCGCGCGTCCATTTGAG 62.521 66.667 32.35 0.00 0.00 3.02
158 159 3.788766 GCGCGCGTCCATTTGAGT 61.789 61.111 32.35 0.00 0.00 3.41
159 160 2.395690 CGCGCGTCCATTTGAGTC 59.604 61.111 24.19 0.00 0.00 3.36
160 161 2.395690 GCGCGTCCATTTGAGTCG 59.604 61.111 8.43 0.00 0.00 4.18
161 162 3.081133 CGCGTCCATTTGAGTCGG 58.919 61.111 0.00 0.00 0.00 4.79
162 163 1.736645 CGCGTCCATTTGAGTCGGT 60.737 57.895 0.00 0.00 0.00 4.69
163 164 1.787847 GCGTCCATTTGAGTCGGTG 59.212 57.895 0.00 0.00 0.00 4.94
164 165 1.787847 CGTCCATTTGAGTCGGTGC 59.212 57.895 0.00 0.00 0.00 5.01
165 166 0.948623 CGTCCATTTGAGTCGGTGCA 60.949 55.000 0.00 0.00 0.00 4.57
166 167 1.453155 GTCCATTTGAGTCGGTGCAT 58.547 50.000 0.00 0.00 0.00 3.96
167 168 1.812571 GTCCATTTGAGTCGGTGCATT 59.187 47.619 0.00 0.00 0.00 3.56
168 169 1.811965 TCCATTTGAGTCGGTGCATTG 59.188 47.619 0.00 0.00 0.00 2.82
169 170 1.135315 CCATTTGAGTCGGTGCATTGG 60.135 52.381 0.00 0.00 0.00 3.16
170 171 1.135315 CATTTGAGTCGGTGCATTGGG 60.135 52.381 0.00 0.00 0.00 4.12
171 172 1.523154 TTTGAGTCGGTGCATTGGGC 61.523 55.000 0.00 0.00 45.13 5.36
172 173 2.045926 GAGTCGGTGCATTGGGCT 60.046 61.111 0.00 0.00 45.15 5.19
173 174 2.360350 AGTCGGTGCATTGGGCTG 60.360 61.111 0.00 0.00 45.15 4.85
174 175 4.120331 GTCGGTGCATTGGGCTGC 62.120 66.667 0.00 0.00 45.15 5.25
177 178 2.999063 GGTGCATTGGGCTGCCTT 60.999 61.111 19.68 0.77 45.15 4.35
178 179 2.586293 GGTGCATTGGGCTGCCTTT 61.586 57.895 19.68 0.37 45.15 3.11
179 180 1.372307 GTGCATTGGGCTGCCTTTT 59.628 52.632 19.68 0.00 45.15 2.27
180 181 0.952010 GTGCATTGGGCTGCCTTTTG 60.952 55.000 19.68 13.79 45.15 2.44
181 182 1.372307 GCATTGGGCTGCCTTTTGT 59.628 52.632 19.68 0.00 40.25 2.83
182 183 0.952010 GCATTGGGCTGCCTTTTGTG 60.952 55.000 19.68 11.39 40.25 3.33
183 184 0.393820 CATTGGGCTGCCTTTTGTGT 59.606 50.000 19.68 0.00 0.00 3.72
184 185 0.681175 ATTGGGCTGCCTTTTGTGTC 59.319 50.000 19.68 0.00 0.00 3.67
185 186 1.398958 TTGGGCTGCCTTTTGTGTCC 61.399 55.000 19.68 0.00 0.00 4.02
186 187 2.644992 GGCTGCCTTTTGTGTCCG 59.355 61.111 12.43 0.00 0.00 4.79
187 188 2.050077 GCTGCCTTTTGTGTCCGC 60.050 61.111 0.00 0.00 0.00 5.54
188 189 2.844451 GCTGCCTTTTGTGTCCGCA 61.844 57.895 0.00 0.00 0.00 5.69
189 190 1.008538 CTGCCTTTTGTGTCCGCAC 60.009 57.895 0.00 0.00 45.44 5.34
190 191 2.335011 GCCTTTTGTGTCCGCACC 59.665 61.111 0.00 0.00 44.65 5.01
191 192 2.637025 CCTTTTGTGTCCGCACCG 59.363 61.111 0.00 0.00 44.65 4.94
192 193 1.890041 CCTTTTGTGTCCGCACCGA 60.890 57.895 0.00 0.00 44.65 4.69
193 194 1.278637 CTTTTGTGTCCGCACCGAC 59.721 57.895 0.00 0.00 44.65 4.79
194 195 2.113131 CTTTTGTGTCCGCACCGACC 62.113 60.000 0.00 0.00 44.65 4.79
195 196 4.612412 TTGTGTCCGCACCGACCC 62.612 66.667 0.00 0.00 44.65 4.46
197 198 4.612412 GTGTCCGCACCGACCCAA 62.612 66.667 0.00 0.00 39.61 4.12
198 199 3.862991 TGTCCGCACCGACCCAAA 61.863 61.111 0.00 0.00 31.35 3.28
199 200 3.351416 GTCCGCACCGACCCAAAC 61.351 66.667 0.00 0.00 0.00 2.93
200 201 4.973055 TCCGCACCGACCCAAACG 62.973 66.667 0.00 0.00 0.00 3.60
224 225 3.486263 GGCAGACGAAATGGGTCG 58.514 61.111 0.00 0.00 46.54 4.79
225 226 2.750888 GGCAGACGAAATGGGTCGC 61.751 63.158 0.00 0.00 45.00 5.19
226 227 2.750888 GCAGACGAAATGGGTCGCC 61.751 63.158 0.00 0.00 45.00 5.54
227 228 2.106683 CAGACGAAATGGGTCGCCC 61.107 63.158 7.87 7.87 45.00 6.13
238 239 3.080647 GGTCGCCCCATTAGAGTTG 57.919 57.895 0.00 0.00 0.00 3.16
239 240 1.095807 GGTCGCCCCATTAGAGTTGC 61.096 60.000 0.00 0.00 0.00 4.17
240 241 0.107654 GTCGCCCCATTAGAGTTGCT 60.108 55.000 0.00 0.00 0.00 3.91
241 242 0.178068 TCGCCCCATTAGAGTTGCTC 59.822 55.000 0.00 0.00 0.00 4.26
242 243 0.179000 CGCCCCATTAGAGTTGCTCT 59.821 55.000 4.02 4.02 43.83 4.09
243 244 1.673168 GCCCCATTAGAGTTGCTCTG 58.327 55.000 8.75 0.00 41.37 3.35
244 245 1.210478 GCCCCATTAGAGTTGCTCTGA 59.790 52.381 8.75 1.24 41.37 3.27
245 246 2.158696 GCCCCATTAGAGTTGCTCTGAT 60.159 50.000 8.75 3.57 41.37 2.90
246 247 3.686691 GCCCCATTAGAGTTGCTCTGATT 60.687 47.826 8.75 0.00 41.37 2.57
247 248 3.881688 CCCCATTAGAGTTGCTCTGATTG 59.118 47.826 8.75 2.75 41.37 2.67
248 249 4.384537 CCCCATTAGAGTTGCTCTGATTGA 60.385 45.833 8.75 0.00 41.37 2.57
249 250 5.188434 CCCATTAGAGTTGCTCTGATTGAA 58.812 41.667 8.75 0.00 41.37 2.69
250 251 5.649395 CCCATTAGAGTTGCTCTGATTGAAA 59.351 40.000 8.75 0.00 41.37 2.69
251 252 6.151648 CCCATTAGAGTTGCTCTGATTGAAAA 59.848 38.462 8.75 0.00 41.37 2.29
252 253 7.147949 CCCATTAGAGTTGCTCTGATTGAAAAT 60.148 37.037 8.75 0.00 41.37 1.82
253 254 8.248945 CCATTAGAGTTGCTCTGATTGAAAATT 58.751 33.333 8.75 0.00 41.37 1.82
254 255 9.073368 CATTAGAGTTGCTCTGATTGAAAATTG 57.927 33.333 8.75 0.00 41.37 2.32
255 256 6.022163 AGAGTTGCTCTGATTGAAAATTGG 57.978 37.500 0.00 0.00 39.62 3.16
256 257 4.563061 AGTTGCTCTGATTGAAAATTGGC 58.437 39.130 0.00 0.00 0.00 4.52
257 258 4.282703 AGTTGCTCTGATTGAAAATTGGCT 59.717 37.500 0.00 0.00 0.00 4.75
258 259 4.182693 TGCTCTGATTGAAAATTGGCTG 57.817 40.909 0.00 0.00 0.00 4.85
259 260 3.827876 TGCTCTGATTGAAAATTGGCTGA 59.172 39.130 0.00 0.00 0.00 4.26
260 261 4.082408 TGCTCTGATTGAAAATTGGCTGAG 60.082 41.667 0.00 0.00 0.00 3.35
261 262 4.677250 GCTCTGATTGAAAATTGGCTGAGG 60.677 45.833 0.00 0.00 0.00 3.86
262 263 3.194116 TCTGATTGAAAATTGGCTGAGGC 59.806 43.478 0.00 0.00 37.82 4.70
263 264 2.898612 TGATTGAAAATTGGCTGAGGCA 59.101 40.909 3.93 3.93 40.87 4.75
264 265 2.818130 TTGAAAATTGGCTGAGGCAC 57.182 45.000 8.71 0.00 37.98 5.01
265 266 1.702182 TGAAAATTGGCTGAGGCACA 58.298 45.000 8.71 0.00 37.98 4.57
266 267 2.250031 TGAAAATTGGCTGAGGCACAT 58.750 42.857 8.71 3.01 37.98 3.21
267 268 3.429492 TGAAAATTGGCTGAGGCACATA 58.571 40.909 8.71 0.00 37.98 2.29
268 269 4.025360 TGAAAATTGGCTGAGGCACATAT 58.975 39.130 8.71 0.00 37.98 1.78
269 270 4.142116 TGAAAATTGGCTGAGGCACATATG 60.142 41.667 8.71 0.00 37.98 1.78
270 271 3.301794 AATTGGCTGAGGCACATATGA 57.698 42.857 8.71 0.00 37.98 2.15
271 272 3.520691 ATTGGCTGAGGCACATATGAT 57.479 42.857 8.71 0.00 37.98 2.45
272 273 4.645863 ATTGGCTGAGGCACATATGATA 57.354 40.909 8.71 0.00 37.98 2.15
273 274 3.407424 TGGCTGAGGCACATATGATAC 57.593 47.619 10.38 0.00 40.87 2.24
274 275 2.705127 TGGCTGAGGCACATATGATACA 59.295 45.455 10.38 1.80 40.87 2.29
275 276 3.328637 TGGCTGAGGCACATATGATACAT 59.671 43.478 10.38 0.00 40.87 2.29
276 277 3.688185 GGCTGAGGCACATATGATACATG 59.312 47.826 10.38 0.00 40.87 3.21
277 278 4.564199 GGCTGAGGCACATATGATACATGA 60.564 45.833 10.38 0.00 40.87 3.07
278 279 4.999311 GCTGAGGCACATATGATACATGAA 59.001 41.667 10.38 0.00 38.54 2.57
279 280 5.471116 GCTGAGGCACATATGATACATGAAA 59.529 40.000 10.38 0.00 38.54 2.69
280 281 6.348295 GCTGAGGCACATATGATACATGAAAG 60.348 42.308 10.38 0.00 38.54 2.62
281 282 6.829849 TGAGGCACATATGATACATGAAAGA 58.170 36.000 10.38 0.00 0.00 2.52
282 283 7.281841 TGAGGCACATATGATACATGAAAGAA 58.718 34.615 10.38 0.00 0.00 2.52
283 284 7.443272 TGAGGCACATATGATACATGAAAGAAG 59.557 37.037 10.38 0.00 0.00 2.85
284 285 7.512130 AGGCACATATGATACATGAAAGAAGA 58.488 34.615 10.38 0.00 0.00 2.87
285 286 8.162085 AGGCACATATGATACATGAAAGAAGAT 58.838 33.333 10.38 0.00 0.00 2.40
286 287 8.790718 GGCACATATGATACATGAAAGAAGATT 58.209 33.333 10.38 0.00 0.00 2.40
297 298 8.788409 ACATGAAAGAAGATTTCGAAAAGAAC 57.212 30.769 15.66 7.44 38.83 3.01
298 299 8.405531 ACATGAAAGAAGATTTCGAAAAGAACA 58.594 29.630 15.66 7.81 38.83 3.18
299 300 9.403110 CATGAAAGAAGATTTCGAAAAGAACAT 57.597 29.630 15.66 9.54 38.83 2.71
300 301 8.786937 TGAAAGAAGATTTCGAAAAGAACATG 57.213 30.769 15.66 0.00 38.83 3.21
301 302 7.862372 TGAAAGAAGATTTCGAAAAGAACATGG 59.138 33.333 15.66 0.00 38.83 3.66
302 303 5.703876 AGAAGATTTCGAAAAGAACATGGC 58.296 37.500 15.66 0.00 38.83 4.40
303 304 4.083581 AGATTTCGAAAAGAACATGGCG 57.916 40.909 15.66 0.00 38.83 5.69
304 305 3.502211 AGATTTCGAAAAGAACATGGCGT 59.498 39.130 15.66 0.00 38.83 5.68
305 306 2.961522 TTCGAAAAGAACATGGCGTC 57.038 45.000 0.00 0.00 33.14 5.19
306 307 1.872388 TCGAAAAGAACATGGCGTCA 58.128 45.000 0.00 0.00 0.00 4.35
307 308 2.422597 TCGAAAAGAACATGGCGTCAT 58.577 42.857 0.00 0.00 0.00 3.06
308 309 2.811431 TCGAAAAGAACATGGCGTCATT 59.189 40.909 0.00 0.00 0.00 2.57
309 310 2.910482 CGAAAAGAACATGGCGTCATTG 59.090 45.455 0.00 0.00 0.00 2.82
310 311 3.364864 CGAAAAGAACATGGCGTCATTGA 60.365 43.478 0.00 0.00 0.00 2.57
311 312 3.559238 AAAGAACATGGCGTCATTGAC 57.441 42.857 0.00 6.73 0.00 3.18
320 321 3.134127 GTCATTGACGCTGGGGCC 61.134 66.667 0.13 0.00 34.44 5.80
321 322 3.645660 TCATTGACGCTGGGGCCA 61.646 61.111 4.39 0.00 34.44 5.36
322 323 2.440796 CATTGACGCTGGGGCCAT 60.441 61.111 4.39 0.00 34.44 4.40
323 324 1.152984 CATTGACGCTGGGGCCATA 60.153 57.895 4.39 0.00 34.44 2.74
324 325 0.538057 CATTGACGCTGGGGCCATAT 60.538 55.000 4.39 0.00 34.44 1.78
325 326 0.185901 ATTGACGCTGGGGCCATATT 59.814 50.000 4.39 0.00 34.44 1.28
326 327 0.033601 TTGACGCTGGGGCCATATTT 60.034 50.000 4.39 0.00 34.44 1.40
327 328 0.033601 TGACGCTGGGGCCATATTTT 60.034 50.000 4.39 0.00 34.44 1.82
328 329 1.111277 GACGCTGGGGCCATATTTTT 58.889 50.000 4.39 0.00 34.44 1.94
329 330 1.067060 GACGCTGGGGCCATATTTTTC 59.933 52.381 4.39 0.00 34.44 2.29
330 331 0.389025 CGCTGGGGCCATATTTTTCC 59.611 55.000 4.39 0.00 34.44 3.13
331 332 0.389025 GCTGGGGCCATATTTTTCCG 59.611 55.000 4.39 0.00 0.00 4.30
332 333 2.026905 GCTGGGGCCATATTTTTCCGA 61.027 52.381 4.39 0.00 0.00 4.55
333 334 1.956477 CTGGGGCCATATTTTTCCGAG 59.044 52.381 4.39 0.00 0.00 4.63
334 335 1.328279 GGGGCCATATTTTTCCGAGG 58.672 55.000 4.39 0.00 0.00 4.63
335 336 1.133606 GGGGCCATATTTTTCCGAGGA 60.134 52.381 4.39 0.00 0.00 3.71
336 337 2.661718 GGGCCATATTTTTCCGAGGAA 58.338 47.619 4.39 0.00 0.00 3.36
337 338 3.028130 GGGCCATATTTTTCCGAGGAAA 58.972 45.455 12.85 12.85 41.69 3.13
338 339 3.181479 GGGCCATATTTTTCCGAGGAAAC 60.181 47.826 16.12 4.10 42.88 2.78
339 340 3.488553 GGCCATATTTTTCCGAGGAAACG 60.489 47.826 16.12 4.13 42.88 3.60
348 349 2.165319 CCGAGGAAACGGTCTTTTCT 57.835 50.000 0.00 0.00 46.70 2.52
349 350 2.490991 CCGAGGAAACGGTCTTTTCTT 58.509 47.619 0.00 0.00 46.70 2.52
350 351 2.479275 CCGAGGAAACGGTCTTTTCTTC 59.521 50.000 0.00 3.21 46.70 2.87
351 352 2.479275 CGAGGAAACGGTCTTTTCTTCC 59.521 50.000 6.52 0.00 37.99 3.46
362 363 6.653740 ACGGTCTTTTCTTCCGATTAATTTCT 59.346 34.615 9.75 0.00 46.05 2.52
374 375 6.765512 TCCGATTAATTTCTGCATGATGTACA 59.234 34.615 0.00 0.00 0.00 2.90
384 385 7.686438 TCTGCATGATGTACAATGTTAAACT 57.314 32.000 0.00 0.00 0.00 2.66
402 403 7.913297 TGTTAAACTCATTCTTGTTTACTGCAC 59.087 33.333 0.00 0.00 38.05 4.57
404 405 3.498397 ACTCATTCTTGTTTACTGCACCG 59.502 43.478 0.00 0.00 0.00 4.94
419 420 1.000274 GCACCGAGGCAAATCTTTTGT 60.000 47.619 2.32 0.00 0.00 2.83
422 423 3.004734 CACCGAGGCAAATCTTTTGTCTT 59.995 43.478 8.35 0.00 34.05 3.01
431 432 8.257306 AGGCAAATCTTTTGTCTTAAGTTCAAA 58.743 29.630 17.55 17.55 28.58 2.69
432 433 8.878769 GGCAAATCTTTTGTCTTAAGTTCAAAA 58.121 29.630 24.42 24.42 38.27 2.44
457 458 1.552226 TAGAGTAAAATGCGTCGGCG 58.448 50.000 4.29 4.29 44.10 6.46
460 468 1.059838 GTAAAATGCGTCGGCGGTC 59.940 57.895 13.05 0.00 44.10 4.79
467 475 1.881252 GCGTCGGCGGTCATTGTAT 60.881 57.895 13.05 0.00 38.78 2.29
481 489 5.448438 GTCATTGTATTTGTGTCGAAAGCA 58.552 37.500 0.00 0.00 0.00 3.91
482 490 6.086222 GTCATTGTATTTGTGTCGAAAGCAT 58.914 36.000 0.00 0.00 0.00 3.79
514 522 9.937175 GCTCAATATACTTAAGAATTTGGTCAC 57.063 33.333 10.09 0.00 0.00 3.67
525 533 9.793259 TTAAGAATTTGGTCACTATTCTTGAGT 57.207 29.630 19.61 0.00 44.21 3.41
548 556 8.417780 AGTACAATGATCAAAGAGAGATTTCG 57.582 34.615 0.00 0.00 0.00 3.46
558 566 6.875726 TCAAAGAGAGATTTCGACACAATGAT 59.124 34.615 0.00 0.00 0.00 2.45
574 582 7.041721 ACACAATGATCGCCGATACATATTAT 58.958 34.615 0.00 0.00 0.00 1.28
576 584 7.847564 CACAATGATCGCCGATACATATTATTG 59.152 37.037 0.00 0.00 0.00 1.90
609 617 4.316025 AAGCTACCAATGGCCTCTTTTA 57.684 40.909 3.32 0.00 31.21 1.52
612 620 6.013554 AGCTACCAATGGCCTCTTTTATTA 57.986 37.500 3.32 0.00 31.21 0.98
614 622 6.895204 AGCTACCAATGGCCTCTTTTATTAAA 59.105 34.615 3.32 0.00 31.21 1.52
642 657 0.824109 TAGCAATGACTGTCGAGGGG 59.176 55.000 2.98 0.00 0.00 4.79
644 659 1.450312 CAATGACTGTCGAGGGGGC 60.450 63.158 2.98 0.00 0.00 5.80
645 660 1.613630 AATGACTGTCGAGGGGGCT 60.614 57.895 2.98 0.00 0.00 5.19
646 661 1.201429 AATGACTGTCGAGGGGGCTT 61.201 55.000 2.98 0.00 0.00 4.35
647 662 1.903877 ATGACTGTCGAGGGGGCTTG 61.904 60.000 2.98 0.00 0.00 4.01
648 663 2.203788 ACTGTCGAGGGGGCTTGA 60.204 61.111 0.00 0.00 0.00 3.02
649 664 1.827399 GACTGTCGAGGGGGCTTGAA 61.827 60.000 0.00 0.00 0.00 2.69
650 665 1.078848 CTGTCGAGGGGGCTTGAAG 60.079 63.158 0.00 0.00 0.00 3.02
651 666 2.436824 GTCGAGGGGGCTTGAAGC 60.437 66.667 9.04 9.04 41.46 3.86
652 667 2.607750 TCGAGGGGGCTTGAAGCT 60.608 61.111 17.59 0.00 41.99 3.74
653 668 2.437359 CGAGGGGGCTTGAAGCTG 60.437 66.667 17.59 0.00 41.99 4.24
654 669 2.753446 GAGGGGGCTTGAAGCTGC 60.753 66.667 17.59 0.64 41.99 5.25
655 670 4.729918 AGGGGGCTTGAAGCTGCG 62.730 66.667 17.59 0.00 41.99 5.18
657 672 2.046314 GGGGCTTGAAGCTGCGTA 60.046 61.111 17.59 0.00 41.99 4.42
658 673 1.452108 GGGGCTTGAAGCTGCGTAT 60.452 57.895 17.59 0.00 41.99 3.06
659 674 0.179056 GGGGCTTGAAGCTGCGTATA 60.179 55.000 17.59 0.00 41.99 1.47
660 675 0.938008 GGGCTTGAAGCTGCGTATAC 59.062 55.000 17.59 0.00 41.99 1.47
661 676 0.577269 GGCTTGAAGCTGCGTATACG 59.423 55.000 20.87 20.87 41.99 3.06
662 677 1.278238 GCTTGAAGCTGCGTATACGT 58.722 50.000 25.04 6.09 38.89 3.57
663 678 1.659098 GCTTGAAGCTGCGTATACGTT 59.341 47.619 25.04 12.33 38.89 3.99
664 679 2.285084 GCTTGAAGCTGCGTATACGTTC 60.285 50.000 25.04 19.74 38.89 3.95
665 680 2.933495 TGAAGCTGCGTATACGTTCT 57.067 45.000 25.04 16.29 42.22 3.01
666 681 2.526077 TGAAGCTGCGTATACGTTCTG 58.474 47.619 25.04 14.42 42.22 3.02
667 682 2.094906 TGAAGCTGCGTATACGTTCTGT 60.095 45.455 25.04 9.49 42.22 3.41
668 683 2.649331 AGCTGCGTATACGTTCTGTT 57.351 45.000 25.04 9.62 42.22 3.16
694 710 1.228124 CTGCCGGGACAGGAAACAA 60.228 57.895 2.18 0.00 33.85 2.83
757 773 4.500703 CGCAGTCCGTTTAACTAATCTG 57.499 45.455 0.00 0.00 0.00 2.90
758 774 3.924686 CGCAGTCCGTTTAACTAATCTGT 59.075 43.478 0.00 0.00 0.00 3.41
759 775 4.031426 CGCAGTCCGTTTAACTAATCTGTC 59.969 45.833 0.00 0.00 0.00 3.51
760 776 4.329256 GCAGTCCGTTTAACTAATCTGTCC 59.671 45.833 0.00 0.00 0.00 4.02
761 777 4.561606 CAGTCCGTTTAACTAATCTGTCCG 59.438 45.833 0.00 0.00 0.00 4.79
762 778 4.460382 AGTCCGTTTAACTAATCTGTCCGA 59.540 41.667 0.00 0.00 0.00 4.55
763 779 4.797349 GTCCGTTTAACTAATCTGTCCGAG 59.203 45.833 0.00 0.00 0.00 4.63
764 780 4.460382 TCCGTTTAACTAATCTGTCCGAGT 59.540 41.667 0.00 0.00 0.00 4.18
765 781 5.647658 TCCGTTTAACTAATCTGTCCGAGTA 59.352 40.000 0.00 0.00 0.00 2.59
766 782 6.150976 TCCGTTTAACTAATCTGTCCGAGTAA 59.849 38.462 0.00 0.00 0.00 2.24
767 783 6.808212 CCGTTTAACTAATCTGTCCGAGTAAA 59.192 38.462 0.00 0.00 0.00 2.01
768 784 7.490402 CCGTTTAACTAATCTGTCCGAGTAAAT 59.510 37.037 0.00 0.00 0.00 1.40
769 785 8.318876 CGTTTAACTAATCTGTCCGAGTAAATG 58.681 37.037 0.00 0.00 0.00 2.32
770 786 9.362539 GTTTAACTAATCTGTCCGAGTAAATGA 57.637 33.333 0.00 0.00 0.00 2.57
771 787 9.932207 TTTAACTAATCTGTCCGAGTAAATGAA 57.068 29.630 0.00 0.00 0.00 2.57
772 788 9.582431 TTAACTAATCTGTCCGAGTAAATGAAG 57.418 33.333 0.00 0.00 0.00 3.02
773 789 6.043411 ACTAATCTGTCCGAGTAAATGAAGC 58.957 40.000 0.00 0.00 0.00 3.86
774 790 3.953712 TCTGTCCGAGTAAATGAAGCA 57.046 42.857 0.00 0.00 0.00 3.91
775 791 4.265904 TCTGTCCGAGTAAATGAAGCAA 57.734 40.909 0.00 0.00 0.00 3.91
776 792 3.994392 TCTGTCCGAGTAAATGAAGCAAC 59.006 43.478 0.00 0.00 0.00 4.17
929 949 3.181479 ACTCAAAACACAGAGCACGTCTA 60.181 43.478 0.00 0.00 35.28 2.59
974 1013 3.462579 TCCTGTACTAGGCTAGGCTACTT 59.537 47.826 24.57 13.64 46.87 2.24
1698 1741 2.897969 GTGGAAGAAGTGGGAGTCAGTA 59.102 50.000 0.00 0.00 0.00 2.74
1946 1989 9.382244 GTTGAGTTGTTATTATTGTGTGTCTTC 57.618 33.333 0.00 0.00 0.00 2.87
2097 2146 9.241317 GAACTCCATATTTTTCATTATGCACTG 57.759 33.333 0.00 0.00 0.00 3.66
2196 2251 7.407337 GTCAGTTTGAATACCATTAATCGACC 58.593 38.462 0.00 0.00 0.00 4.79
2296 2553 6.509523 ACTAGGACTAGAGCTAGAACAGAT 57.490 41.667 13.00 0.00 36.97 2.90
2365 6234 8.531146 TGGAAAATACTCCCTTGAATTTTGATC 58.469 33.333 0.00 0.00 33.03 2.92
2487 6359 4.030216 ACCGGCCAGATTTATTTTCCAAT 58.970 39.130 0.00 0.00 0.00 3.16
2498 6370 8.360390 AGATTTATTTTCCAATATTTCCGGAGC 58.640 33.333 3.34 0.00 0.00 4.70
2500 6372 4.981806 TTTTCCAATATTTCCGGAGCAG 57.018 40.909 3.34 0.00 0.00 4.24
2549 6422 4.511082 CCAACAAAGGCCAAAACACTATTG 59.489 41.667 5.01 0.00 0.00 1.90
2598 6473 7.624549 ACATAACATAAGAGAACATGAGTGGT 58.375 34.615 0.00 0.00 0.00 4.16
2638 6513 9.394767 TGAGAAAGTTATTTGCATAGCATAGAA 57.605 29.630 0.00 0.00 38.76 2.10
2722 6601 8.270030 TGGGAATATGATCTAGAGGCAATTATG 58.730 37.037 0.00 0.00 0.00 1.90
2744 6625 3.504906 GGTGATGATTATGCTCCCATGTG 59.495 47.826 0.00 0.00 32.85 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.194326 GCCCTCTTCCCATCCAGC 59.806 66.667 0.00 0.00 0.00 4.85
1 2 0.554792 ATTGCCCTCTTCCCATCCAG 59.445 55.000 0.00 0.00 0.00 3.86
2 3 0.259647 CATTGCCCTCTTCCCATCCA 59.740 55.000 0.00 0.00 0.00 3.41
3 4 0.259938 ACATTGCCCTCTTCCCATCC 59.740 55.000 0.00 0.00 0.00 3.51
4 5 1.396653 CACATTGCCCTCTTCCCATC 58.603 55.000 0.00 0.00 0.00 3.51
5 6 0.685458 GCACATTGCCCTCTTCCCAT 60.685 55.000 0.00 0.00 37.42 4.00
6 7 1.304381 GCACATTGCCCTCTTCCCA 60.304 57.895 0.00 0.00 37.42 4.37
7 8 3.608432 GCACATTGCCCTCTTCCC 58.392 61.111 0.00 0.00 37.42 3.97
16 17 2.981560 CTGGTCGGTGGCACATTGC 61.982 63.158 20.82 6.09 44.52 3.56
17 18 2.981560 GCTGGTCGGTGGCACATTG 61.982 63.158 20.82 8.68 44.52 2.82
18 19 2.672996 GCTGGTCGGTGGCACATT 60.673 61.111 20.82 0.00 44.52 2.71
40 41 3.157949 GCCCTCTTCCCTCCTCGG 61.158 72.222 0.00 0.00 0.00 4.63
41 42 3.532155 CGCCCTCTTCCCTCCTCG 61.532 72.222 0.00 0.00 0.00 4.63
42 43 3.855853 GCGCCCTCTTCCCTCCTC 61.856 72.222 0.00 0.00 0.00 3.71
61 62 4.086178 AGACACGAGACGGACGCG 62.086 66.667 3.53 3.53 46.44 6.01
62 63 2.502080 CAGACACGAGACGGACGC 60.502 66.667 0.00 0.00 0.00 5.19
63 64 2.502080 GCAGACACGAGACGGACG 60.502 66.667 0.00 0.00 0.00 4.79
64 65 0.798771 GATGCAGACACGAGACGGAC 60.799 60.000 0.00 0.00 0.00 4.79
65 66 1.506718 GATGCAGACACGAGACGGA 59.493 57.895 0.00 0.00 0.00 4.69
66 67 1.869574 CGATGCAGACACGAGACGG 60.870 63.158 0.00 0.00 0.00 4.79
67 68 1.128724 GTCGATGCAGACACGAGACG 61.129 60.000 7.98 0.00 40.65 4.18
68 69 1.128724 CGTCGATGCAGACACGAGAC 61.129 60.000 8.06 1.71 40.98 3.36
69 70 1.134694 CGTCGATGCAGACACGAGA 59.865 57.895 8.06 0.00 40.98 4.04
70 71 2.500442 GCGTCGATGCAGACACGAG 61.500 63.158 24.45 8.48 40.98 4.18
71 72 2.504026 GCGTCGATGCAGACACGA 60.504 61.111 24.45 10.25 40.98 4.35
72 73 2.804931 TGCGTCGATGCAGACACG 60.805 61.111 27.87 6.43 40.62 4.49
78 79 1.446966 TCGGATTTGCGTCGATGCA 60.447 52.632 27.87 27.87 44.61 3.96
79 80 1.012234 GTCGGATTTGCGTCGATGC 60.012 57.895 22.77 22.77 35.35 3.91
80 81 0.999406 AAGTCGGATTTGCGTCGATG 59.001 50.000 0.00 0.00 35.35 3.84
81 82 2.572191 TAAGTCGGATTTGCGTCGAT 57.428 45.000 0.00 0.00 35.35 3.59
82 83 2.350899 TTAAGTCGGATTTGCGTCGA 57.649 45.000 0.00 0.00 0.00 4.20
83 84 3.443054 TTTTAAGTCGGATTTGCGTCG 57.557 42.857 0.00 0.00 0.00 5.12
84 85 4.557301 CCATTTTTAAGTCGGATTTGCGTC 59.443 41.667 0.00 0.00 0.00 5.19
85 86 4.481463 CCATTTTTAAGTCGGATTTGCGT 58.519 39.130 0.00 0.00 0.00 5.24
86 87 3.857093 CCCATTTTTAAGTCGGATTTGCG 59.143 43.478 0.00 0.00 0.00 4.85
87 88 4.816392 ACCCATTTTTAAGTCGGATTTGC 58.184 39.130 0.00 0.00 0.00 3.68
88 89 5.092781 CGACCCATTTTTAAGTCGGATTTG 58.907 41.667 3.60 0.00 46.24 2.32
89 90 5.305139 CGACCCATTTTTAAGTCGGATTT 57.695 39.130 3.60 0.00 46.24 2.17
90 91 4.957759 CGACCCATTTTTAAGTCGGATT 57.042 40.909 3.60 0.00 46.24 3.01
95 96 4.142249 CCATTCCCGACCCATTTTTAAGTC 60.142 45.833 0.00 0.00 0.00 3.01
96 97 3.767131 CCATTCCCGACCCATTTTTAAGT 59.233 43.478 0.00 0.00 0.00 2.24
97 98 4.020543 TCCATTCCCGACCCATTTTTAAG 58.979 43.478 0.00 0.00 0.00 1.85
98 99 4.048970 TCCATTCCCGACCCATTTTTAA 57.951 40.909 0.00 0.00 0.00 1.52
99 100 3.741245 TCCATTCCCGACCCATTTTTA 57.259 42.857 0.00 0.00 0.00 1.52
100 101 2.614134 TCCATTCCCGACCCATTTTT 57.386 45.000 0.00 0.00 0.00 1.94
101 102 2.387757 CATCCATTCCCGACCCATTTT 58.612 47.619 0.00 0.00 0.00 1.82
102 103 2.028996 GCATCCATTCCCGACCCATTT 61.029 52.381 0.00 0.00 0.00 2.32
103 104 0.468029 GCATCCATTCCCGACCCATT 60.468 55.000 0.00 0.00 0.00 3.16
104 105 1.151450 GCATCCATTCCCGACCCAT 59.849 57.895 0.00 0.00 0.00 4.00
105 106 2.595095 GCATCCATTCCCGACCCA 59.405 61.111 0.00 0.00 0.00 4.51
106 107 2.203351 GGCATCCATTCCCGACCC 60.203 66.667 0.00 0.00 0.00 4.46
107 108 2.203351 GGGCATCCATTCCCGACC 60.203 66.667 0.00 0.00 32.00 4.79
108 109 2.203351 GGGGCATCCATTCCCGAC 60.203 66.667 0.00 0.00 43.55 4.79
113 114 4.562425 TCCGCGGGGCATCCATTC 62.562 66.667 27.83 0.00 34.36 2.67
114 115 4.875713 GTCCGCGGGGCATCCATT 62.876 66.667 27.83 0.00 34.36 3.16
119 120 4.708386 TTTTCGTCCGCGGGGCAT 62.708 61.111 27.83 0.00 38.89 4.40
140 141 4.520846 CTCAAATGGACGCGCGCC 62.521 66.667 32.58 30.12 0.00 6.53
141 142 3.702334 GACTCAAATGGACGCGCGC 62.702 63.158 32.58 23.91 0.00 6.86
142 143 2.395690 GACTCAAATGGACGCGCG 59.604 61.111 30.96 30.96 0.00 6.86
143 144 2.395690 CGACTCAAATGGACGCGC 59.604 61.111 5.73 0.00 0.00 6.86
144 145 1.736645 ACCGACTCAAATGGACGCG 60.737 57.895 3.53 3.53 0.00 6.01
145 146 1.787847 CACCGACTCAAATGGACGC 59.212 57.895 0.00 0.00 0.00 5.19
146 147 0.948623 TGCACCGACTCAAATGGACG 60.949 55.000 0.00 0.00 0.00 4.79
147 148 1.453155 ATGCACCGACTCAAATGGAC 58.547 50.000 0.00 0.00 0.00 4.02
148 149 1.811965 CAATGCACCGACTCAAATGGA 59.188 47.619 0.00 0.00 0.00 3.41
149 150 1.135315 CCAATGCACCGACTCAAATGG 60.135 52.381 0.00 0.00 0.00 3.16
150 151 1.135315 CCCAATGCACCGACTCAAATG 60.135 52.381 0.00 0.00 0.00 2.32
151 152 1.176527 CCCAATGCACCGACTCAAAT 58.823 50.000 0.00 0.00 0.00 2.32
152 153 1.523154 GCCCAATGCACCGACTCAAA 61.523 55.000 0.00 0.00 40.77 2.69
153 154 1.971167 GCCCAATGCACCGACTCAA 60.971 57.895 0.00 0.00 40.77 3.02
154 155 2.359850 GCCCAATGCACCGACTCA 60.360 61.111 0.00 0.00 40.77 3.41
155 156 2.045926 AGCCCAATGCACCGACTC 60.046 61.111 0.00 0.00 44.83 3.36
156 157 2.360350 CAGCCCAATGCACCGACT 60.360 61.111 0.00 0.00 44.83 4.18
157 158 4.120331 GCAGCCCAATGCACCGAC 62.120 66.667 0.00 0.00 45.77 4.79
163 164 0.952010 CACAAAAGGCAGCCCAATGC 60.952 55.000 8.22 0.00 45.74 3.56
164 165 0.393820 ACACAAAAGGCAGCCCAATG 59.606 50.000 8.22 7.13 0.00 2.82
165 166 0.681175 GACACAAAAGGCAGCCCAAT 59.319 50.000 8.22 0.00 0.00 3.16
166 167 1.398958 GGACACAAAAGGCAGCCCAA 61.399 55.000 8.22 0.00 0.00 4.12
167 168 1.832167 GGACACAAAAGGCAGCCCA 60.832 57.895 8.22 0.00 0.00 5.36
168 169 2.919494 CGGACACAAAAGGCAGCCC 61.919 63.158 8.22 0.00 0.00 5.19
169 170 2.644992 CGGACACAAAAGGCAGCC 59.355 61.111 1.84 1.84 0.00 4.85
170 171 2.050077 GCGGACACAAAAGGCAGC 60.050 61.111 0.00 0.00 0.00 5.25
171 172 1.008538 GTGCGGACACAAAAGGCAG 60.009 57.895 0.63 0.00 46.61 4.85
172 173 3.115556 GTGCGGACACAAAAGGCA 58.884 55.556 0.63 0.00 46.61 4.75
180 181 4.612412 TTGGGTCGGTGCGGACAC 62.612 66.667 9.96 8.37 46.66 3.67
181 182 3.862991 TTTGGGTCGGTGCGGACA 61.863 61.111 9.96 0.00 38.70 4.02
182 183 3.351416 GTTTGGGTCGGTGCGGAC 61.351 66.667 0.00 0.00 36.18 4.79
183 184 4.973055 CGTTTGGGTCGGTGCGGA 62.973 66.667 0.00 0.00 0.00 5.54
185 186 4.973055 TCCGTTTGGGTCGGTGCG 62.973 66.667 4.36 0.00 46.86 5.34
186 187 3.351416 GTCCGTTTGGGTCGGTGC 61.351 66.667 4.36 0.00 46.86 5.01
187 188 3.039588 CGTCCGTTTGGGTCGGTG 61.040 66.667 4.36 0.00 46.86 4.94
188 189 3.225798 TCGTCCGTTTGGGTCGGT 61.226 61.111 4.36 0.00 45.67 4.69
189 190 2.735857 GTCGTCCGTTTGGGTCGG 60.736 66.667 0.00 0.00 45.67 4.79
190 191 3.101428 CGTCGTCCGTTTGGGTCG 61.101 66.667 0.00 0.00 46.78 4.79
191 192 2.735857 CCGTCGTCCGTTTGGGTC 60.736 66.667 0.00 0.00 37.00 4.46
192 193 4.974989 GCCGTCGTCCGTTTGGGT 62.975 66.667 0.00 0.00 37.00 4.51
193 194 4.973055 TGCCGTCGTCCGTTTGGG 62.973 66.667 0.00 0.00 35.24 4.12
194 195 3.411351 CTGCCGTCGTCCGTTTGG 61.411 66.667 0.00 0.00 33.66 3.28
195 196 2.355363 TCTGCCGTCGTCCGTTTG 60.355 61.111 0.00 0.00 33.66 2.93
196 197 2.355481 GTCTGCCGTCGTCCGTTT 60.355 61.111 0.00 0.00 33.66 3.60
197 198 4.695231 CGTCTGCCGTCGTCCGTT 62.695 66.667 0.00 0.00 33.66 4.44
199 200 3.884581 TTTCGTCTGCCGTCGTCCG 62.885 63.158 0.00 0.00 37.94 4.79
200 201 1.445582 ATTTCGTCTGCCGTCGTCC 60.446 57.895 0.00 0.00 37.94 4.79
201 202 1.683790 CCATTTCGTCTGCCGTCGTC 61.684 60.000 0.00 0.00 37.94 4.20
202 203 1.736645 CCATTTCGTCTGCCGTCGT 60.737 57.895 0.00 0.00 37.94 4.34
203 204 2.452813 CCCATTTCGTCTGCCGTCG 61.453 63.158 0.00 0.00 37.94 5.12
204 205 1.359459 GACCCATTTCGTCTGCCGTC 61.359 60.000 0.00 0.00 37.94 4.79
205 206 1.375523 GACCCATTTCGTCTGCCGT 60.376 57.895 0.00 0.00 37.94 5.68
206 207 2.452813 CGACCCATTTCGTCTGCCG 61.453 63.158 0.00 0.00 34.16 5.69
207 208 2.750888 GCGACCCATTTCGTCTGCC 61.751 63.158 0.00 0.00 41.26 4.85
208 209 2.750888 GGCGACCCATTTCGTCTGC 61.751 63.158 0.00 0.00 40.53 4.26
209 210 3.486263 GGCGACCCATTTCGTCTG 58.514 61.111 0.00 0.00 40.53 3.51
221 222 0.107654 AGCAACTCTAATGGGGCGAC 60.108 55.000 0.00 0.00 0.00 5.19
222 223 0.178068 GAGCAACTCTAATGGGGCGA 59.822 55.000 0.00 0.00 0.00 5.54
223 224 0.179000 AGAGCAACTCTAATGGGGCG 59.821 55.000 0.00 0.00 39.28 6.13
224 225 1.210478 TCAGAGCAACTCTAATGGGGC 59.790 52.381 0.00 0.00 38.99 5.80
225 226 3.853355 ATCAGAGCAACTCTAATGGGG 57.147 47.619 0.00 0.00 38.99 4.96
226 227 4.774124 TCAATCAGAGCAACTCTAATGGG 58.226 43.478 0.00 0.00 38.99 4.00
227 228 6.748333 TTTCAATCAGAGCAACTCTAATGG 57.252 37.500 0.00 0.00 38.99 3.16
228 229 9.073368 CAATTTTCAATCAGAGCAACTCTAATG 57.927 33.333 0.00 0.00 38.99 1.90
229 230 8.248945 CCAATTTTCAATCAGAGCAACTCTAAT 58.751 33.333 0.00 0.00 38.99 1.73
230 231 7.596494 CCAATTTTCAATCAGAGCAACTCTAA 58.404 34.615 0.00 0.00 38.99 2.10
231 232 6.349611 GCCAATTTTCAATCAGAGCAACTCTA 60.350 38.462 0.00 0.00 38.99 2.43
232 233 5.566230 GCCAATTTTCAATCAGAGCAACTCT 60.566 40.000 0.00 0.00 42.11 3.24
233 234 4.624452 GCCAATTTTCAATCAGAGCAACTC 59.376 41.667 0.00 0.00 0.00 3.01
234 235 4.282703 AGCCAATTTTCAATCAGAGCAACT 59.717 37.500 0.00 0.00 0.00 3.16
235 236 4.387862 CAGCCAATTTTCAATCAGAGCAAC 59.612 41.667 0.00 0.00 0.00 4.17
236 237 4.281435 TCAGCCAATTTTCAATCAGAGCAA 59.719 37.500 0.00 0.00 0.00 3.91
237 238 3.827876 TCAGCCAATTTTCAATCAGAGCA 59.172 39.130 0.00 0.00 0.00 4.26
238 239 4.421948 CTCAGCCAATTTTCAATCAGAGC 58.578 43.478 0.00 0.00 0.00 4.09
239 240 4.677250 GCCTCAGCCAATTTTCAATCAGAG 60.677 45.833 0.00 0.00 0.00 3.35
240 241 3.194116 GCCTCAGCCAATTTTCAATCAGA 59.806 43.478 0.00 0.00 0.00 3.27
241 242 3.056393 TGCCTCAGCCAATTTTCAATCAG 60.056 43.478 0.00 0.00 38.69 2.90
242 243 2.898612 TGCCTCAGCCAATTTTCAATCA 59.101 40.909 0.00 0.00 38.69 2.57
243 244 3.256558 GTGCCTCAGCCAATTTTCAATC 58.743 45.455 0.00 0.00 38.69 2.67
244 245 2.633967 TGTGCCTCAGCCAATTTTCAAT 59.366 40.909 0.00 0.00 38.69 2.57
245 246 2.037901 TGTGCCTCAGCCAATTTTCAA 58.962 42.857 0.00 0.00 38.69 2.69
246 247 1.702182 TGTGCCTCAGCCAATTTTCA 58.298 45.000 0.00 0.00 38.69 2.69
247 248 4.098349 TCATATGTGCCTCAGCCAATTTTC 59.902 41.667 1.90 0.00 38.69 2.29
248 249 4.025360 TCATATGTGCCTCAGCCAATTTT 58.975 39.130 1.90 0.00 38.69 1.82
249 250 3.634504 TCATATGTGCCTCAGCCAATTT 58.365 40.909 1.90 0.00 38.69 1.82
250 251 3.301794 TCATATGTGCCTCAGCCAATT 57.698 42.857 1.90 0.00 38.69 2.32
251 252 3.520691 ATCATATGTGCCTCAGCCAAT 57.479 42.857 1.90 0.00 38.69 3.16
252 253 3.136260 TGTATCATATGTGCCTCAGCCAA 59.864 43.478 1.90 0.00 38.69 4.52
253 254 2.705127 TGTATCATATGTGCCTCAGCCA 59.295 45.455 1.90 0.00 38.69 4.75
254 255 3.407424 TGTATCATATGTGCCTCAGCC 57.593 47.619 1.90 0.00 38.69 4.85
255 256 4.572909 TCATGTATCATATGTGCCTCAGC 58.427 43.478 1.90 0.00 40.48 4.26
256 257 6.932960 TCTTTCATGTATCATATGTGCCTCAG 59.067 38.462 1.90 0.00 0.00 3.35
257 258 6.829849 TCTTTCATGTATCATATGTGCCTCA 58.170 36.000 1.90 0.00 0.00 3.86
258 259 7.658982 TCTTCTTTCATGTATCATATGTGCCTC 59.341 37.037 1.90 0.00 0.00 4.70
259 260 7.512130 TCTTCTTTCATGTATCATATGTGCCT 58.488 34.615 1.90 0.00 0.00 4.75
260 261 7.734924 TCTTCTTTCATGTATCATATGTGCC 57.265 36.000 1.90 0.00 0.00 5.01
271 272 9.878599 GTTCTTTTCGAAATCTTCTTTCATGTA 57.121 29.630 12.12 0.00 32.41 2.29
272 273 8.405531 TGTTCTTTTCGAAATCTTCTTTCATGT 58.594 29.630 12.12 0.00 32.41 3.21
273 274 8.786937 TGTTCTTTTCGAAATCTTCTTTCATG 57.213 30.769 12.12 0.00 32.41 3.07
274 275 9.403110 CATGTTCTTTTCGAAATCTTCTTTCAT 57.597 29.630 12.12 6.33 32.41 2.57
275 276 7.862372 CCATGTTCTTTTCGAAATCTTCTTTCA 59.138 33.333 12.12 4.41 32.41 2.69
276 277 7.148902 GCCATGTTCTTTTCGAAATCTTCTTTC 60.149 37.037 12.12 0.00 32.41 2.62
277 278 6.642540 GCCATGTTCTTTTCGAAATCTTCTTT 59.357 34.615 12.12 0.00 32.41 2.52
278 279 6.152379 GCCATGTTCTTTTCGAAATCTTCTT 58.848 36.000 12.12 0.00 32.41 2.52
279 280 5.617751 CGCCATGTTCTTTTCGAAATCTTCT 60.618 40.000 12.12 0.00 32.41 2.85
280 281 4.554973 CGCCATGTTCTTTTCGAAATCTTC 59.445 41.667 12.12 4.34 32.41 2.87
281 282 4.023193 ACGCCATGTTCTTTTCGAAATCTT 60.023 37.500 12.12 0.00 32.41 2.40
282 283 3.502211 ACGCCATGTTCTTTTCGAAATCT 59.498 39.130 12.12 0.00 32.41 2.40
283 284 3.821841 ACGCCATGTTCTTTTCGAAATC 58.178 40.909 12.12 4.00 32.41 2.17
284 285 3.252215 TGACGCCATGTTCTTTTCGAAAT 59.748 39.130 12.12 0.00 32.41 2.17
285 286 2.614520 TGACGCCATGTTCTTTTCGAAA 59.385 40.909 6.47 6.47 32.41 3.46
286 287 2.214347 TGACGCCATGTTCTTTTCGAA 58.786 42.857 0.00 0.00 0.00 3.71
287 288 1.872388 TGACGCCATGTTCTTTTCGA 58.128 45.000 0.00 0.00 0.00 3.71
288 289 2.900122 ATGACGCCATGTTCTTTTCG 57.100 45.000 0.00 0.00 0.00 3.46
289 290 3.914364 GTCAATGACGCCATGTTCTTTTC 59.086 43.478 0.00 0.00 32.36 2.29
290 291 3.900941 GTCAATGACGCCATGTTCTTTT 58.099 40.909 0.00 0.00 32.36 2.27
291 292 3.559238 GTCAATGACGCCATGTTCTTT 57.441 42.857 0.00 0.00 32.36 2.52
303 304 3.134127 GGCCCCAGCGTCAATGAC 61.134 66.667 2.75 2.75 41.24 3.06
304 305 1.631071 TATGGCCCCAGCGTCAATGA 61.631 55.000 0.00 0.00 41.24 2.57
305 306 0.538057 ATATGGCCCCAGCGTCAATG 60.538 55.000 0.00 0.00 41.24 2.82
306 307 0.185901 AATATGGCCCCAGCGTCAAT 59.814 50.000 0.00 0.00 41.24 2.57
307 308 0.033601 AAATATGGCCCCAGCGTCAA 60.034 50.000 0.00 0.00 41.24 3.18
308 309 0.033601 AAAATATGGCCCCAGCGTCA 60.034 50.000 0.00 0.00 41.24 4.35
309 310 1.067060 GAAAAATATGGCCCCAGCGTC 59.933 52.381 0.00 0.00 41.24 5.19
310 311 1.111277 GAAAAATATGGCCCCAGCGT 58.889 50.000 0.00 0.00 41.24 5.07
311 312 0.389025 GGAAAAATATGGCCCCAGCG 59.611 55.000 0.00 0.00 41.24 5.18
312 313 0.389025 CGGAAAAATATGGCCCCAGC 59.611 55.000 0.00 0.00 38.76 4.85
313 314 1.956477 CTCGGAAAAATATGGCCCCAG 59.044 52.381 0.00 0.00 0.00 4.45
314 315 1.410932 CCTCGGAAAAATATGGCCCCA 60.411 52.381 0.00 0.00 0.00 4.96
315 316 1.133606 TCCTCGGAAAAATATGGCCCC 60.134 52.381 0.00 0.00 0.00 5.80
316 317 2.358322 TCCTCGGAAAAATATGGCCC 57.642 50.000 0.00 0.00 0.00 5.80
317 318 3.488553 CGTTTCCTCGGAAAAATATGGCC 60.489 47.826 12.39 0.00 44.40 5.36
318 319 3.691498 CGTTTCCTCGGAAAAATATGGC 58.309 45.455 12.39 0.00 44.40 4.40
330 331 2.479275 GGAAGAAAAGACCGTTTCCTCG 59.521 50.000 5.12 0.00 38.10 4.63
331 332 2.479275 CGGAAGAAAAGACCGTTTCCTC 59.521 50.000 0.00 2.69 41.47 3.71
332 333 2.103601 TCGGAAGAAAAGACCGTTTCCT 59.896 45.455 0.00 0.00 45.71 3.36
333 334 2.486918 TCGGAAGAAAAGACCGTTTCC 58.513 47.619 0.00 0.00 45.71 3.13
347 348 6.732154 ACATCATGCAGAAATTAATCGGAAG 58.268 36.000 0.00 0.00 0.00 3.46
348 349 6.698008 ACATCATGCAGAAATTAATCGGAA 57.302 33.333 0.00 0.00 0.00 4.30
349 350 6.765512 TGTACATCATGCAGAAATTAATCGGA 59.234 34.615 0.00 0.00 0.00 4.55
350 351 6.958255 TGTACATCATGCAGAAATTAATCGG 58.042 36.000 0.00 0.00 0.00 4.18
351 352 8.898792 CATTGTACATCATGCAGAAATTAATCG 58.101 33.333 0.00 0.00 0.00 3.34
352 353 9.740239 ACATTGTACATCATGCAGAAATTAATC 57.260 29.630 7.34 0.00 0.00 1.75
362 363 7.446001 TGAGTTTAACATTGTACATCATGCA 57.554 32.000 7.34 0.00 0.00 3.96
374 375 9.463443 GCAGTAAACAAGAATGAGTTTAACATT 57.537 29.630 0.00 0.00 40.62 2.71
384 385 3.734463 TCGGTGCAGTAAACAAGAATGA 58.266 40.909 0.00 0.00 0.00 2.57
402 403 3.923017 AAGACAAAAGATTTGCCTCGG 57.077 42.857 2.88 0.00 0.00 4.63
404 405 7.425606 TGAACTTAAGACAAAAGATTTGCCTC 58.574 34.615 10.09 0.00 0.00 4.70
431 432 6.674760 GCCGACGCATTTTACTCTAAATCTTT 60.675 38.462 0.00 0.00 34.03 2.52
432 433 5.220605 GCCGACGCATTTTACTCTAAATCTT 60.221 40.000 0.00 0.00 34.03 2.40
433 434 4.270325 GCCGACGCATTTTACTCTAAATCT 59.730 41.667 0.00 0.00 34.03 2.40
434 435 4.515432 GCCGACGCATTTTACTCTAAATC 58.485 43.478 0.00 0.00 34.03 2.17
435 436 3.000925 CGCCGACGCATTTTACTCTAAAT 59.999 43.478 0.00 0.00 34.03 1.40
436 437 2.346244 CGCCGACGCATTTTACTCTAAA 59.654 45.455 0.00 0.00 34.03 1.85
451 452 1.735571 ACAAATACAATGACCGCCGAC 59.264 47.619 0.00 0.00 0.00 4.79
457 458 4.851558 GCTTTCGACACAAATACAATGACC 59.148 41.667 0.00 0.00 0.00 4.02
460 468 7.243487 AGTATGCTTTCGACACAAATACAATG 58.757 34.615 0.00 0.00 0.00 2.82
507 515 7.676004 TCATTGTACTCAAGAATAGTGACCAA 58.324 34.615 0.00 0.00 36.97 3.67
525 533 8.034804 TGTCGAAATCTCTCTTTGATCATTGTA 58.965 33.333 0.00 0.00 0.00 2.41
539 547 3.553511 GCGATCATTGTGTCGAAATCTCT 59.446 43.478 14.96 0.00 40.11 3.10
548 556 2.469826 TGTATCGGCGATCATTGTGTC 58.530 47.619 27.61 8.19 0.00 3.67
558 566 7.956420 AAGAAACAATAATATGTATCGGCGA 57.044 32.000 13.87 13.87 32.02 5.54
574 582 7.708752 CCATTGGTAGCTTTGTAAAAGAAACAA 59.291 33.333 3.95 6.27 35.12 2.83
576 584 6.145534 GCCATTGGTAGCTTTGTAAAAGAAAC 59.854 38.462 4.26 1.24 0.00 2.78
620 635 2.534298 CCTCGACAGTCATTGCTAGTG 58.466 52.381 0.41 0.00 0.00 2.74
642 657 0.577269 CGTATACGCAGCTTCAAGCC 59.423 55.000 13.08 0.00 43.77 4.35
644 659 3.000674 CAGAACGTATACGCAGCTTCAAG 60.001 47.826 24.64 12.87 44.43 3.02
645 660 2.921121 CAGAACGTATACGCAGCTTCAA 59.079 45.455 24.64 0.00 44.43 2.69
646 661 2.094906 ACAGAACGTATACGCAGCTTCA 60.095 45.455 24.64 0.00 44.43 3.02
647 662 2.527100 ACAGAACGTATACGCAGCTTC 58.473 47.619 24.64 19.09 44.43 3.86
648 663 2.649331 ACAGAACGTATACGCAGCTT 57.351 45.000 24.64 11.63 44.43 3.74
649 664 2.527100 GAACAGAACGTATACGCAGCT 58.473 47.619 24.64 15.79 44.43 4.24
650 665 1.252015 CGAACAGAACGTATACGCAGC 59.748 52.381 24.64 13.85 44.43 5.25
651 666 1.844357 CCGAACAGAACGTATACGCAG 59.156 52.381 24.64 13.95 44.43 5.18
652 667 1.898938 CCGAACAGAACGTATACGCA 58.101 50.000 24.64 0.00 44.43 5.24
653 668 0.569349 GCCGAACAGAACGTATACGC 59.431 55.000 24.64 9.85 44.43 4.42
654 669 1.580704 GTGCCGAACAGAACGTATACG 59.419 52.381 23.24 23.24 46.33 3.06
655 670 2.850647 GAGTGCCGAACAGAACGTATAC 59.149 50.000 0.00 0.00 0.00 1.47
656 671 2.751259 AGAGTGCCGAACAGAACGTATA 59.249 45.455 0.00 0.00 0.00 1.47
657 672 1.544691 AGAGTGCCGAACAGAACGTAT 59.455 47.619 0.00 0.00 0.00 3.06
658 673 0.956633 AGAGTGCCGAACAGAACGTA 59.043 50.000 0.00 0.00 0.00 3.57
659 674 0.597637 CAGAGTGCCGAACAGAACGT 60.598 55.000 0.00 0.00 0.00 3.99
660 675 1.891060 GCAGAGTGCCGAACAGAACG 61.891 60.000 0.00 0.00 37.42 3.95
661 676 1.862806 GCAGAGTGCCGAACAGAAC 59.137 57.895 0.00 0.00 37.42 3.01
662 677 4.361253 GCAGAGTGCCGAACAGAA 57.639 55.556 0.00 0.00 37.42 3.02
680 695 1.202770 ACTCCTTTGTTTCCTGTCCCG 60.203 52.381 0.00 0.00 0.00 5.14
694 710 2.686915 CCGTACTCAACCGATACTCCTT 59.313 50.000 0.00 0.00 0.00 3.36
746 762 9.582431 CTTCATTTACTCGGACAGATTAGTTAA 57.418 33.333 0.00 0.00 0.00 2.01
747 763 7.705325 GCTTCATTTACTCGGACAGATTAGTTA 59.295 37.037 0.00 0.00 0.00 2.24
748 764 6.535508 GCTTCATTTACTCGGACAGATTAGTT 59.464 38.462 0.00 0.00 0.00 2.24
749 765 6.043411 GCTTCATTTACTCGGACAGATTAGT 58.957 40.000 0.00 0.00 0.00 2.24
750 766 6.042777 TGCTTCATTTACTCGGACAGATTAG 58.957 40.000 0.00 0.00 0.00 1.73
752 768 4.832248 TGCTTCATTTACTCGGACAGATT 58.168 39.130 0.00 0.00 0.00 2.40
753 769 4.471904 TGCTTCATTTACTCGGACAGAT 57.528 40.909 0.00 0.00 0.00 2.90
754 770 3.953712 TGCTTCATTTACTCGGACAGA 57.046 42.857 0.00 0.00 0.00 3.41
755 771 3.125316 GGTTGCTTCATTTACTCGGACAG 59.875 47.826 0.00 0.00 0.00 3.51
756 772 3.071479 GGTTGCTTCATTTACTCGGACA 58.929 45.455 0.00 0.00 0.00 4.02
757 773 2.418976 GGGTTGCTTCATTTACTCGGAC 59.581 50.000 0.00 0.00 0.00 4.79
758 774 2.039216 TGGGTTGCTTCATTTACTCGGA 59.961 45.455 0.00 0.00 0.00 4.55
759 775 2.432444 TGGGTTGCTTCATTTACTCGG 58.568 47.619 0.00 0.00 0.00 4.63
760 776 4.396166 AGAATGGGTTGCTTCATTTACTCG 59.604 41.667 0.00 0.00 34.18 4.18
761 777 5.904362 AGAATGGGTTGCTTCATTTACTC 57.096 39.130 0.00 0.00 34.18 2.59
762 778 6.485171 AGTAGAATGGGTTGCTTCATTTACT 58.515 36.000 0.00 0.00 34.18 2.24
763 779 6.759497 AGTAGAATGGGTTGCTTCATTTAC 57.241 37.500 0.00 0.00 34.18 2.01
764 780 6.542370 GCTAGTAGAATGGGTTGCTTCATTTA 59.458 38.462 0.00 0.00 34.18 1.40
765 781 5.358160 GCTAGTAGAATGGGTTGCTTCATTT 59.642 40.000 0.00 0.00 34.18 2.32
766 782 4.884164 GCTAGTAGAATGGGTTGCTTCATT 59.116 41.667 0.00 0.00 36.43 2.57
767 783 4.455606 GCTAGTAGAATGGGTTGCTTCAT 58.544 43.478 0.00 0.00 0.00 2.57
768 784 3.370527 GGCTAGTAGAATGGGTTGCTTCA 60.371 47.826 0.00 0.00 0.00 3.02
769 785 3.118223 AGGCTAGTAGAATGGGTTGCTTC 60.118 47.826 0.00 0.00 0.00 3.86
770 786 2.846827 AGGCTAGTAGAATGGGTTGCTT 59.153 45.455 0.00 0.00 0.00 3.91
771 787 2.482494 AGGCTAGTAGAATGGGTTGCT 58.518 47.619 0.00 0.00 0.00 3.91
772 788 3.244249 CCTAGGCTAGTAGAATGGGTTGC 60.244 52.174 19.68 0.00 0.00 4.17
773 789 3.967987 ACCTAGGCTAGTAGAATGGGTTG 59.032 47.826 19.68 3.03 0.00 3.77
774 790 4.282292 ACCTAGGCTAGTAGAATGGGTT 57.718 45.455 19.68 0.00 0.00 4.11
775 791 3.995691 ACCTAGGCTAGTAGAATGGGT 57.004 47.619 19.68 6.41 0.00 4.51
776 792 6.936968 AATTACCTAGGCTAGTAGAATGGG 57.063 41.667 19.68 5.77 0.00 4.00
851 868 1.066430 GGTTTGGGAGCGTCAGTGATA 60.066 52.381 0.00 0.00 0.00 2.15
929 949 1.340211 CGGTGGAGACTAGTGAGGAGT 60.340 57.143 0.00 0.00 0.00 3.85
974 1013 3.974835 ATCAATCGGCGCCTGTGCA 62.975 57.895 26.68 5.72 37.32 4.57
1597 1640 0.746063 ACCCACACGTAGTCGAACAA 59.254 50.000 0.00 0.00 41.61 2.83
1698 1741 2.687566 AAGATCTTCCCCGCCGGT 60.688 61.111 1.90 0.00 0.00 5.28
2028 2077 5.938125 GGACTTGGCTCAAAGAAACTATACA 59.062 40.000 2.10 0.00 0.00 2.29
2044 2093 6.655078 ATTTGATGTAATATGGGACTTGGC 57.345 37.500 0.00 0.00 0.00 4.52
2097 2146 8.239998 ACTTTTCTATAGAATCAAAAGCAGTGC 58.760 33.333 15.82 7.13 38.76 4.40
2196 2251 6.943981 TCTTAAAAAGTCGACAAGTCATGTG 58.056 36.000 19.50 0.27 44.12 3.21
2296 2553 8.940397 AAAAGGAATAATCACTTTCTTCCAGA 57.060 30.769 0.00 0.00 38.25 3.86
2353 6221 9.656040 CACAGGAATAATTGGATCAAAATTCAA 57.344 29.630 8.44 0.00 34.82 2.69
2365 6234 3.514645 GCAAGTGCACAGGAATAATTGG 58.485 45.455 21.04 0.00 41.59 3.16
2487 6359 5.553123 TGTAAACTTTCTGCTCCGGAAATA 58.447 37.500 5.23 0.00 37.96 1.40
2500 6372 9.595357 GCTAGTTCAGTTGTATTGTAAACTTTC 57.405 33.333 0.00 0.00 34.41 2.62
2638 6513 7.486407 AATGAAGATGAGGCAACCTATTTTT 57.514 32.000 0.00 0.00 31.76 1.94
2722 6601 3.504906 CACATGGGAGCATAATCATCACC 59.495 47.826 0.00 0.00 0.00 4.02
2848 6730 3.678252 CGCTCATATCCTCAATGGCTAGG 60.678 52.174 0.00 0.00 35.26 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.