Multiple sequence alignment - TraesCS3D01G365600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G365600 chr3D 100.000 4736 0 0 1 4736 480116256 480120991 0.000000e+00 8746
1 TraesCS3D01G365600 chr3D 85.681 433 59 1 4289 4721 480837015 480837444 2.010000e-123 453
2 TraesCS3D01G365600 chr3D 97.321 224 6 0 5 228 453841040 453840817 9.620000e-102 381
3 TraesCS3D01G365600 chr3D 96.070 229 8 1 1 228 555554421 555554193 5.790000e-99 372
4 TraesCS3D01G365600 chr3D 95.633 229 9 1 1 228 537733135 537732907 2.690000e-97 366
5 TraesCS3D01G365600 chr3B 86.300 1489 123 31 226 1692 640655203 640656632 0.000000e+00 1544
6 TraesCS3D01G365600 chr3B 92.816 877 41 6 3247 4104 640658282 640659155 0.000000e+00 1251
7 TraesCS3D01G365600 chr3B 92.998 557 29 6 4190 4736 640659280 640659836 0.000000e+00 804
8 TraesCS3D01G365600 chr3B 94.776 402 21 0 1689 2090 640656671 640657072 1.120000e-175 627
9 TraesCS3D01G365600 chr3B 86.154 585 66 5 2202 2777 640657097 640657675 6.730000e-173 617
10 TraesCS3D01G365600 chr3B 83.784 444 67 3 4294 4736 640664572 640665011 2.640000e-112 416
11 TraesCS3D01G365600 chr3B 83.603 433 68 1 4289 4721 641653973 641654402 2.050000e-108 403
12 TraesCS3D01G365600 chr3B 82.143 448 77 3 4289 4736 640832253 640832697 9.620000e-102 381
13 TraesCS3D01G365600 chr3B 86.466 266 29 2 2867 3125 640657676 640657941 7.760000e-73 285
14 TraesCS3D01G365600 chr3B 80.669 269 29 11 3131 3376 640658011 640658279 2.250000e-43 187
15 TraesCS3D01G365600 chr3A 91.292 1045 68 14 665 1692 623186912 623187950 0.000000e+00 1404
16 TraesCS3D01G365600 chr3A 90.602 947 54 20 3175 4094 623189472 623190410 0.000000e+00 1223
17 TraesCS3D01G365600 chr3A 83.176 951 111 24 2202 3125 623188418 623189346 0.000000e+00 824
18 TraesCS3D01G365600 chr3A 93.398 515 24 1 4232 4736 623190564 623191078 0.000000e+00 754
19 TraesCS3D01G365600 chr3A 93.532 402 26 0 1689 2090 623187990 623188391 2.440000e-167 599
20 TraesCS3D01G365600 chr3A 84.988 433 62 1 4289 4721 623605111 623605540 2.020000e-118 436
21 TraesCS3D01G365600 chr3A 85.158 411 59 2 4289 4698 623197004 623197413 2.040000e-113 420
22 TraesCS3D01G365600 chr3A 84.390 410 64 0 4289 4698 623200409 623200818 2.050000e-108 403
23 TraesCS3D01G365600 chr3A 89.167 120 8 2 472 586 623186720 623186839 1.370000e-30 145
24 TraesCS3D01G365600 chr2D 96.507 229 7 1 1 228 184944907 184944679 1.240000e-100 377
25 TraesCS3D01G365600 chr2D 96.070 229 8 1 1 228 154425651 154425879 5.790000e-99 372
26 TraesCS3D01G365600 chr7D 96.429 224 8 0 5 228 221765689 221765466 2.080000e-98 370
27 TraesCS3D01G365600 chr7D 89.524 105 9 2 2768 2870 258225686 258225582 1.070000e-26 132
28 TraesCS3D01G365600 chr7D 77.236 246 26 15 2880 3116 509571515 509571291 2.990000e-22 117
29 TraesCS3D01G365600 chr6D 95.633 229 9 1 1 228 296054082 296053854 2.690000e-97 366
30 TraesCS3D01G365600 chr6D 92.857 98 6 1 2774 2870 200398811 200398714 1.780000e-29 141
31 TraesCS3D01G365600 chr5D 95.633 229 9 1 1 228 309536001 309536229 2.690000e-97 366
32 TraesCS3D01G365600 chr1D 95.633 229 9 1 1 228 165228031 165227803 2.690000e-97 366
33 TraesCS3D01G365600 chr5B 95.876 97 3 1 2775 2870 582392571 582392667 6.350000e-34 156
34 TraesCS3D01G365600 chr5B 91.753 97 7 1 2775 2870 689895810 689895714 2.970000e-27 134
35 TraesCS3D01G365600 chr6B 93.814 97 5 1 2775 2870 518389528 518389432 1.370000e-30 145
36 TraesCS3D01G365600 chr4B 92.857 98 6 1 2774 2870 539496809 539496712 1.780000e-29 141
37 TraesCS3D01G365600 chrUn 92.000 100 7 1 2773 2871 477580551 477580650 6.390000e-29 139
38 TraesCS3D01G365600 chr7B 90.385 104 9 1 2768 2870 237489415 237489312 8.270000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G365600 chr3D 480116256 480120991 4735 False 8746.000000 8746 100.0000 1 4736 1 chr3D.!!$F1 4735
1 TraesCS3D01G365600 chr3B 640655203 640659836 4633 False 759.285714 1544 88.5970 226 4736 7 chr3B.!!$F4 4510
2 TraesCS3D01G365600 chr3A 623186720 623191078 4358 False 824.833333 1404 90.1945 472 4736 6 chr3A.!!$F2 4264
3 TraesCS3D01G365600 chr3A 623197004 623200818 3814 False 411.500000 420 84.7740 4289 4698 2 chr3A.!!$F3 409

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
725 755 0.106719 ACCAACAATCTATGGGCCCG 60.107 55.0 19.37 2.31 41.17 6.13 F
726 756 0.106719 CCAACAATCTATGGGCCCGT 60.107 55.0 23.08 23.08 32.87 5.28 F
1576 1625 1.159285 GTCTGCTGCACAATGCTGTA 58.841 50.0 0.00 4.30 45.31 2.74 F
2873 2990 0.105453 TGGGGCAGAGGGAGTAGATC 60.105 60.0 0.00 0.00 0.00 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2557 2654 1.065854 AGAAGTCGGGGAATCTGCTTG 60.066 52.381 0.00 0.0 0.00 4.01 R
2716 2820 1.971481 TGCAATGTCACTGCAAGAGT 58.029 45.000 6.47 0.0 46.47 3.24 R
2880 2997 0.107410 ACACAAACAGAGGGCAACGA 60.107 50.000 0.00 0.0 37.60 3.85 R
4000 4365 0.320421 ACACCGAGATTCCACCAACG 60.320 55.000 0.00 0.0 0.00 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.338818 ACGAAGTTGCACAACAAGATG 57.661 42.857 15.40 3.65 37.78 2.90
28 29 2.942376 ACGAAGTTGCACAACAAGATGA 59.058 40.909 15.40 0.00 37.78 2.92
29 30 3.565482 ACGAAGTTGCACAACAAGATGAT 59.435 39.130 15.40 0.00 37.78 2.45
30 31 3.910170 CGAAGTTGCACAACAAGATGATG 59.090 43.478 15.40 0.00 43.47 3.07
32 33 2.889045 AGTTGCACAACAAGATGATGCT 59.111 40.909 15.40 0.00 43.47 3.79
33 34 3.319972 AGTTGCACAACAAGATGATGCTT 59.680 39.130 15.40 0.00 43.47 3.91
34 35 4.520111 AGTTGCACAACAAGATGATGCTTA 59.480 37.500 15.40 0.00 43.47 3.09
35 36 4.424061 TGCACAACAAGATGATGCTTAC 57.576 40.909 0.00 0.00 37.20 2.34
36 37 3.819902 TGCACAACAAGATGATGCTTACA 59.180 39.130 0.00 0.00 37.20 2.41
38 39 4.083110 GCACAACAAGATGATGCTTACACT 60.083 41.667 0.00 0.00 33.44 3.55
39 40 5.388111 CACAACAAGATGATGCTTACACTG 58.612 41.667 0.00 0.00 0.00 3.66
40 41 4.083110 ACAACAAGATGATGCTTACACTGC 60.083 41.667 0.00 0.00 0.00 4.40
41 42 3.947868 ACAAGATGATGCTTACACTGCT 58.052 40.909 0.00 0.00 0.00 4.24
42 43 3.937706 ACAAGATGATGCTTACACTGCTC 59.062 43.478 0.00 0.00 0.00 4.26
44 45 2.770802 AGATGATGCTTACACTGCTCCT 59.229 45.455 0.00 0.00 0.00 3.69
45 46 2.391616 TGATGCTTACACTGCTCCTG 57.608 50.000 0.00 0.00 0.00 3.86
46 47 1.901833 TGATGCTTACACTGCTCCTGA 59.098 47.619 0.00 0.00 0.00 3.86
47 48 2.502947 TGATGCTTACACTGCTCCTGAT 59.497 45.455 0.00 0.00 0.00 2.90
48 49 2.391616 TGCTTACACTGCTCCTGATG 57.608 50.000 0.00 0.00 0.00 3.07
49 50 1.625315 TGCTTACACTGCTCCTGATGT 59.375 47.619 0.00 0.00 0.00 3.06
52 53 3.368427 GCTTACACTGCTCCTGATGTACA 60.368 47.826 0.00 0.00 0.00 2.90
54 55 1.067565 ACACTGCTCCTGATGTACACG 60.068 52.381 0.00 0.00 0.00 4.49
55 56 1.202348 CACTGCTCCTGATGTACACGA 59.798 52.381 0.00 0.00 0.00 4.35
56 57 2.103373 ACTGCTCCTGATGTACACGAT 58.897 47.619 0.00 0.00 0.00 3.73
58 59 3.055819 ACTGCTCCTGATGTACACGATTT 60.056 43.478 0.00 0.00 0.00 2.17
59 60 3.521560 TGCTCCTGATGTACACGATTTC 58.478 45.455 0.00 0.00 0.00 2.17
60 61 3.056179 TGCTCCTGATGTACACGATTTCA 60.056 43.478 0.00 0.00 0.00 2.69
61 62 3.307242 GCTCCTGATGTACACGATTTCAC 59.693 47.826 0.00 0.00 0.00 3.18
62 63 4.494484 CTCCTGATGTACACGATTTCACA 58.506 43.478 0.00 0.00 0.00 3.58
63 64 5.084818 TCCTGATGTACACGATTTCACAT 57.915 39.130 0.00 0.00 34.41 3.21
64 65 6.215495 TCCTGATGTACACGATTTCACATA 57.785 37.500 0.00 0.00 31.94 2.29
65 66 6.816136 TCCTGATGTACACGATTTCACATAT 58.184 36.000 0.00 0.00 31.94 1.78
66 67 6.923508 TCCTGATGTACACGATTTCACATATC 59.076 38.462 0.00 0.00 31.94 1.63
67 68 6.925718 CCTGATGTACACGATTTCACATATCT 59.074 38.462 0.00 0.00 31.94 1.98
68 69 7.439356 CCTGATGTACACGATTTCACATATCTT 59.561 37.037 0.00 0.00 31.94 2.40
69 70 8.352752 TGATGTACACGATTTCACATATCTTC 57.647 34.615 0.00 0.00 31.94 2.87
70 71 7.438160 TGATGTACACGATTTCACATATCTTCC 59.562 37.037 0.00 0.00 31.94 3.46
71 72 6.873997 TGTACACGATTTCACATATCTTCCT 58.126 36.000 0.00 0.00 0.00 3.36
72 73 8.002984 TGTACACGATTTCACATATCTTCCTA 57.997 34.615 0.00 0.00 0.00 2.94
74 75 9.477484 GTACACGATTTCACATATCTTCCTAAT 57.523 33.333 0.00 0.00 0.00 1.73
91 92 8.992349 TCTTCCTAATATCTTTGAGAACCATCA 58.008 33.333 0.00 0.00 0.00 3.07
92 93 8.964476 TTCCTAATATCTTTGAGAACCATCAC 57.036 34.615 0.00 0.00 0.00 3.06
93 94 7.210174 TCCTAATATCTTTGAGAACCATCACG 58.790 38.462 0.00 0.00 0.00 4.35
94 95 6.986817 CCTAATATCTTTGAGAACCATCACGT 59.013 38.462 0.00 0.00 0.00 4.49
95 96 6.910536 AATATCTTTGAGAACCATCACGTC 57.089 37.500 0.00 0.00 0.00 4.34
96 97 3.744238 TCTTTGAGAACCATCACGTCA 57.256 42.857 0.00 0.00 0.00 4.35
97 98 4.066646 TCTTTGAGAACCATCACGTCAA 57.933 40.909 0.00 0.00 0.00 3.18
98 99 4.641396 TCTTTGAGAACCATCACGTCAAT 58.359 39.130 0.00 0.00 0.00 2.57
99 100 4.452114 TCTTTGAGAACCATCACGTCAATG 59.548 41.667 0.00 0.00 0.00 2.82
100 101 3.676291 TGAGAACCATCACGTCAATGA 57.324 42.857 8.65 0.00 0.00 2.57
101 102 3.325870 TGAGAACCATCACGTCAATGAC 58.674 45.455 2.75 2.75 0.00 3.06
110 111 3.561429 GTCAATGACGCTGGCGAA 58.439 55.556 21.77 9.50 42.83 4.70
112 113 0.237235 GTCAATGACGCTGGCGAAAA 59.763 50.000 21.77 6.71 42.83 2.29
113 114 0.516877 TCAATGACGCTGGCGAAAAG 59.483 50.000 21.77 7.29 42.83 2.27
115 116 1.131126 CAATGACGCTGGCGAAAAGAT 59.869 47.619 21.77 0.00 42.83 2.40
116 117 1.453155 ATGACGCTGGCGAAAAGATT 58.547 45.000 21.77 0.00 42.83 2.40
117 118 0.516877 TGACGCTGGCGAAAAGATTG 59.483 50.000 21.77 0.00 42.83 2.67
119 120 1.237285 ACGCTGGCGAAAAGATTGCT 61.237 50.000 21.77 0.00 42.83 3.91
120 121 0.109597 CGCTGGCGAAAAGATTGCTT 60.110 50.000 9.51 0.00 42.83 3.91
121 122 1.343506 GCTGGCGAAAAGATTGCTTG 58.656 50.000 0.00 0.00 33.79 4.01
122 123 1.336240 GCTGGCGAAAAGATTGCTTGT 60.336 47.619 0.00 0.00 33.79 3.16
123 124 2.589014 CTGGCGAAAAGATTGCTTGTC 58.411 47.619 0.00 0.00 35.41 3.18
129 130 2.693797 AAAGATTGCTTGTCGTGCTG 57.306 45.000 0.00 0.00 33.79 4.41
130 131 1.597742 AAGATTGCTTGTCGTGCTGT 58.402 45.000 0.00 0.00 31.83 4.40
131 132 0.870393 AGATTGCTTGTCGTGCTGTG 59.130 50.000 0.00 0.00 0.00 3.66
132 133 0.110056 GATTGCTTGTCGTGCTGTGG 60.110 55.000 0.00 0.00 0.00 4.17
133 134 0.534877 ATTGCTTGTCGTGCTGTGGA 60.535 50.000 0.00 0.00 0.00 4.02
134 135 1.436195 TTGCTTGTCGTGCTGTGGAC 61.436 55.000 0.00 0.00 0.00 4.02
135 136 1.887242 GCTTGTCGTGCTGTGGACA 60.887 57.895 0.00 0.00 41.13 4.02
136 137 1.230635 GCTTGTCGTGCTGTGGACAT 61.231 55.000 0.00 0.00 42.27 3.06
137 138 1.939381 GCTTGTCGTGCTGTGGACATA 60.939 52.381 0.00 0.00 42.27 2.29
138 139 1.726791 CTTGTCGTGCTGTGGACATAC 59.273 52.381 0.00 0.00 42.27 2.39
139 140 0.676736 TGTCGTGCTGTGGACATACA 59.323 50.000 0.00 0.00 38.19 2.29
141 142 1.726791 GTCGTGCTGTGGACATACAAG 59.273 52.381 0.00 0.00 33.41 3.16
142 143 1.616374 TCGTGCTGTGGACATACAAGA 59.384 47.619 0.00 0.00 0.00 3.02
143 144 1.995484 CGTGCTGTGGACATACAAGAG 59.005 52.381 0.00 0.00 0.00 2.85
144 145 2.610479 CGTGCTGTGGACATACAAGAGT 60.610 50.000 0.00 0.00 0.00 3.24
145 146 3.403038 GTGCTGTGGACATACAAGAGTT 58.597 45.455 0.00 0.00 0.00 3.01
147 148 3.070878 TGCTGTGGACATACAAGAGTTGA 59.929 43.478 0.00 0.00 0.00 3.18
148 149 4.256920 GCTGTGGACATACAAGAGTTGAT 58.743 43.478 0.00 0.00 0.00 2.57
149 150 4.331168 GCTGTGGACATACAAGAGTTGATC 59.669 45.833 0.00 0.00 0.00 2.92
150 151 5.482006 CTGTGGACATACAAGAGTTGATCA 58.518 41.667 0.00 0.00 0.00 2.92
151 152 5.863965 TGTGGACATACAAGAGTTGATCAA 58.136 37.500 3.38 3.38 0.00 2.57
153 154 6.166279 GTGGACATACAAGAGTTGATCAAGA 58.834 40.000 8.80 0.00 0.00 3.02
155 156 6.875726 TGGACATACAAGAGTTGATCAAGAAG 59.124 38.462 8.80 0.29 0.00 2.85
157 158 7.604164 GGACATACAAGAGTTGATCAAGAAGAA 59.396 37.037 8.80 0.00 0.00 2.52
158 159 8.545229 ACATACAAGAGTTGATCAAGAAGAAG 57.455 34.615 8.80 0.49 0.00 2.85
159 160 8.153550 ACATACAAGAGTTGATCAAGAAGAAGT 58.846 33.333 8.80 6.51 0.00 3.01
161 162 6.586344 ACAAGAGTTGATCAAGAAGAAGTCA 58.414 36.000 8.80 0.00 0.00 3.41
163 164 7.011857 ACAAGAGTTGATCAAGAAGAAGTCAAC 59.988 37.037 8.80 8.12 45.42 3.18
167 168 5.907197 TGATCAAGAAGAAGTCAACGTTC 57.093 39.130 0.00 0.00 0.00 3.95
168 169 4.444388 TGATCAAGAAGAAGTCAACGTTCG 59.556 41.667 0.00 0.00 0.00 3.95
169 170 4.036567 TCAAGAAGAAGTCAACGTTCGA 57.963 40.909 0.00 0.00 0.00 3.71
170 171 4.042398 TCAAGAAGAAGTCAACGTTCGAG 58.958 43.478 0.00 0.00 0.00 4.04
171 172 3.014604 AGAAGAAGTCAACGTTCGAGG 57.985 47.619 0.00 0.00 0.00 4.63
172 173 2.621998 AGAAGAAGTCAACGTTCGAGGA 59.378 45.455 0.00 0.00 0.00 3.71
174 175 1.679680 AGAAGTCAACGTTCGAGGACA 59.320 47.619 16.10 0.00 32.79 4.02
175 176 2.296471 AGAAGTCAACGTTCGAGGACAT 59.704 45.455 16.10 6.60 32.79 3.06
176 177 2.814280 AGTCAACGTTCGAGGACATT 57.186 45.000 16.10 0.00 32.79 2.71
177 178 2.404215 AGTCAACGTTCGAGGACATTG 58.596 47.619 16.10 0.00 32.79 2.82
178 179 2.035449 AGTCAACGTTCGAGGACATTGA 59.965 45.455 16.10 0.00 32.79 2.57
179 180 2.408704 GTCAACGTTCGAGGACATTGAG 59.591 50.000 10.62 0.00 0.00 3.02
180 181 1.726791 CAACGTTCGAGGACATTGAGG 59.273 52.381 0.00 0.00 0.00 3.86
181 182 1.254026 ACGTTCGAGGACATTGAGGA 58.746 50.000 0.00 0.00 0.00 3.71
182 183 1.825474 ACGTTCGAGGACATTGAGGAT 59.175 47.619 0.00 0.00 0.00 3.24
183 184 2.196749 CGTTCGAGGACATTGAGGATG 58.803 52.381 0.00 0.00 41.71 3.51
184 185 2.159240 CGTTCGAGGACATTGAGGATGA 60.159 50.000 0.00 0.00 39.15 2.92
185 186 3.676049 CGTTCGAGGACATTGAGGATGAA 60.676 47.826 0.00 0.00 39.15 2.57
186 187 3.808466 TCGAGGACATTGAGGATGAAG 57.192 47.619 0.00 0.00 39.15 3.02
189 190 4.118410 CGAGGACATTGAGGATGAAGAAG 58.882 47.826 0.00 0.00 39.15 2.85
190 191 4.142071 CGAGGACATTGAGGATGAAGAAGA 60.142 45.833 0.00 0.00 39.15 2.87
191 192 5.625426 CGAGGACATTGAGGATGAAGAAGAA 60.625 44.000 0.00 0.00 39.15 2.52
192 193 5.743117 AGGACATTGAGGATGAAGAAGAAG 58.257 41.667 0.00 0.00 39.15 2.85
193 194 5.486775 AGGACATTGAGGATGAAGAAGAAGA 59.513 40.000 0.00 0.00 39.15 2.87
194 195 6.158344 AGGACATTGAGGATGAAGAAGAAGAT 59.842 38.462 0.00 0.00 39.15 2.40
196 197 6.955364 ACATTGAGGATGAAGAAGAAGATGA 58.045 36.000 0.00 0.00 39.15 2.92
197 198 6.822676 ACATTGAGGATGAAGAAGAAGATGAC 59.177 38.462 0.00 0.00 39.15 3.06
199 200 5.728471 TGAGGATGAAGAAGAAGATGACAC 58.272 41.667 0.00 0.00 0.00 3.67
200 201 5.483231 TGAGGATGAAGAAGAAGATGACACT 59.517 40.000 0.00 0.00 0.00 3.55
201 202 5.976458 AGGATGAAGAAGAAGATGACACTC 58.024 41.667 0.00 0.00 0.00 3.51
202 203 5.721000 AGGATGAAGAAGAAGATGACACTCT 59.279 40.000 0.00 0.00 0.00 3.24
203 204 5.811613 GGATGAAGAAGAAGATGACACTCTG 59.188 44.000 0.00 0.00 0.00 3.35
204 205 5.144692 TGAAGAAGAAGATGACACTCTGG 57.855 43.478 0.00 0.00 0.00 3.86
206 207 2.836981 AGAAGAAGATGACACTCTGGGG 59.163 50.000 0.00 0.00 0.00 4.96
207 208 2.630889 AGAAGATGACACTCTGGGGA 57.369 50.000 0.00 0.00 0.00 4.81
208 209 2.907892 AGAAGATGACACTCTGGGGAA 58.092 47.619 0.00 0.00 0.00 3.97
209 210 3.458831 AGAAGATGACACTCTGGGGAAT 58.541 45.455 0.00 0.00 0.00 3.01
210 211 3.848975 AGAAGATGACACTCTGGGGAATT 59.151 43.478 0.00 0.00 0.00 2.17
213 214 3.133003 AGATGACACTCTGGGGAATTACG 59.867 47.826 0.00 0.00 0.00 3.18
215 216 3.104512 TGACACTCTGGGGAATTACGAT 58.895 45.455 0.00 0.00 0.00 3.73
217 218 4.120589 GACACTCTGGGGAATTACGATTC 58.879 47.826 0.00 0.00 40.78 2.52
218 219 3.517901 ACACTCTGGGGAATTACGATTCA 59.482 43.478 0.00 0.00 42.82 2.57
219 220 4.122776 CACTCTGGGGAATTACGATTCAG 58.877 47.826 0.00 0.00 42.82 3.02
220 221 4.030913 ACTCTGGGGAATTACGATTCAGA 58.969 43.478 0.00 0.00 42.82 3.27
223 224 4.122776 CTGGGGAATTACGATTCAGACTG 58.877 47.826 0.00 0.00 42.82 3.51
224 225 3.772572 TGGGGAATTACGATTCAGACTGA 59.227 43.478 0.00 0.00 42.82 3.41
231 232 7.711339 GGAATTACGATTCAGACTGATACCTTT 59.289 37.037 5.87 0.00 42.82 3.11
248 249 3.265737 ACCTTTGCCACCTCATATGTGTA 59.734 43.478 1.90 0.00 31.71 2.90
249 250 4.079787 ACCTTTGCCACCTCATATGTGTAT 60.080 41.667 1.90 0.00 31.71 2.29
250 251 4.276678 CCTTTGCCACCTCATATGTGTATG 59.723 45.833 1.90 1.49 39.25 2.39
251 252 2.849942 TGCCACCTCATATGTGTATGC 58.150 47.619 1.90 8.26 38.05 3.14
255 256 4.060900 CCACCTCATATGTGTATGCACTC 58.939 47.826 15.25 0.00 45.44 3.51
265 266 6.721704 ATGTGTATGCACTCTCTCTTCATA 57.278 37.500 15.25 0.00 45.44 2.15
271 272 5.255710 TGCACTCTCTCTTCATAAGTAGC 57.744 43.478 0.00 0.00 0.00 3.58
274 275 6.127225 TGCACTCTCTCTTCATAAGTAGCATT 60.127 38.462 0.00 0.00 0.00 3.56
275 276 6.200665 GCACTCTCTCTTCATAAGTAGCATTG 59.799 42.308 0.00 0.00 0.00 2.82
278 279 9.360901 ACTCTCTCTTCATAAGTAGCATTGATA 57.639 33.333 0.00 0.00 0.00 2.15
291 292 9.511272 AAGTAGCATTGATAATATCATCAAGCA 57.489 29.630 17.83 7.67 45.51 3.91
300 301 5.475273 AATATCATCAAGCAAGTGTCACG 57.525 39.130 0.00 0.00 0.00 4.35
318 319 6.193959 GTGTCACGAGTTTGATTACACAAAAC 59.806 38.462 0.00 0.00 40.62 2.43
447 451 8.533569 AAGGGAAAGACAAGTTTTTCTTATGA 57.466 30.769 13.65 0.00 35.01 2.15
479 483 7.336396 ACAAGTTATCTACTGGTATCCAAACC 58.664 38.462 0.00 0.00 39.34 3.27
489 493 3.579586 TGGTATCCAAACCACTCGTACTT 59.420 43.478 0.00 0.00 44.68 2.24
496 500 1.779569 ACCACTCGTACTTTTCGCAG 58.220 50.000 0.00 0.00 0.00 5.18
504 508 6.732392 CACTCGTACTTTTCGCAGAAATTTAG 59.268 38.462 4.91 3.30 45.90 1.85
534 538 1.859302 TGAACCAGCCACCTTTTGTT 58.141 45.000 0.00 0.00 0.00 2.83
588 597 4.898861 TGAACCAGCCACCTTTATTTTCTT 59.101 37.500 0.00 0.00 0.00 2.52
590 599 5.887214 ACCAGCCACCTTTATTTTCTTTT 57.113 34.783 0.00 0.00 0.00 2.27
591 600 6.247229 ACCAGCCACCTTTATTTTCTTTTT 57.753 33.333 0.00 0.00 0.00 1.94
725 755 0.106719 ACCAACAATCTATGGGCCCG 60.107 55.000 19.37 2.31 41.17 6.13
726 756 0.106719 CCAACAATCTATGGGCCCGT 60.107 55.000 23.08 23.08 32.87 5.28
962 994 1.474143 CCGCCATTCTTCTTCCTCTCC 60.474 57.143 0.00 0.00 0.00 3.71
1046 1078 1.375523 CCCCGACAGTAGTTGTGGC 60.376 63.158 0.00 0.00 41.05 5.01
1081 1113 2.100916 CGGGATCCGTGAGATGTTTACT 59.899 50.000 5.45 0.00 42.73 2.24
1125 1157 3.126858 GCATTGGTCGCTAGTCAATTTGA 59.873 43.478 0.00 0.00 0.00 2.69
1203 1235 7.464830 TGTTAGCTACGAGCAAATTTATCTC 57.535 36.000 0.00 8.72 45.56 2.75
1218 1250 4.520743 TTATCTCTCGTACCGTGTTACG 57.479 45.455 2.91 2.91 42.11 3.18
1240 1273 1.746615 CTCGCATCCTTGGTGTGGG 60.747 63.158 0.00 5.87 0.00 4.61
1320 1353 3.243101 ACGCGTCCTGTAGATCTACATTG 60.243 47.826 30.76 24.40 44.15 2.82
1397 1435 8.689972 GTTCATAGAATCAGACCCATGAATTTT 58.310 33.333 0.00 0.00 35.53 1.82
1407 1454 2.752354 CCCATGAATTTTACGCTGTCCA 59.248 45.455 0.00 0.00 0.00 4.02
1539 1588 7.766278 TCTGTATCAAATCTAGGCTTTTCTGTC 59.234 37.037 0.00 0.00 0.00 3.51
1546 1595 3.904339 TCTAGGCTTTTCTGTCTGAAGGT 59.096 43.478 0.00 0.00 35.89 3.50
1552 1601 2.046892 CTGTCTGAAGGTGCCCCG 60.047 66.667 0.00 0.00 35.12 5.73
1576 1625 1.159285 GTCTGCTGCACAATGCTGTA 58.841 50.000 0.00 4.30 45.31 2.74
1579 1628 2.162809 TCTGCTGCACAATGCTGTAATG 59.837 45.455 0.00 0.00 45.31 1.90
1618 1667 6.143438 GCTGTGAACATCAGATTTTGTTGAAG 59.857 38.462 0.00 0.00 36.25 3.02
1731 1823 3.799432 TGGCACCTTACCAATTACAGT 57.201 42.857 0.00 0.00 33.12 3.55
1734 1826 4.532916 TGGCACCTTACCAATTACAGTAGA 59.467 41.667 0.00 0.00 33.12 2.59
1804 1896 6.072783 GCTGATTCCTCCATATTTCAGTAAGC 60.073 42.308 0.00 0.00 34.49 3.09
1920 2012 3.516586 TGGTCTGAAGAACTATGACCCA 58.483 45.455 7.82 0.00 44.60 4.51
2039 2131 6.102897 AGAGGTACCATATGCTTGTATCAC 57.897 41.667 15.94 0.00 0.00 3.06
2044 2136 7.283127 AGGTACCATATGCTTGTATCACTTTTG 59.717 37.037 15.94 0.00 0.00 2.44
2063 2155 6.753744 ACTTTTGATTTCTCTTGTGCTGAAAC 59.246 34.615 0.00 0.00 33.36 2.78
2090 2182 9.956720 CATAGTTCAGTTTCTTGTTCTTCAATT 57.043 29.630 0.00 0.00 35.35 2.32
2092 2184 8.055279 AGTTCAGTTTCTTGTTCTTCAATTCA 57.945 30.769 0.00 0.00 35.35 2.57
2093 2185 8.689972 AGTTCAGTTTCTTGTTCTTCAATTCAT 58.310 29.630 0.00 0.00 35.35 2.57
2094 2186 8.962111 GTTCAGTTTCTTGTTCTTCAATTCATC 58.038 33.333 0.00 0.00 35.35 2.92
2100 2192 9.687210 TTTCTTGTTCTTCAATTCATCATTCAG 57.313 29.630 0.00 0.00 35.35 3.02
2101 2193 8.625786 TCTTGTTCTTCAATTCATCATTCAGA 57.374 30.769 0.00 0.00 35.35 3.27
2102 2194 9.070179 TCTTGTTCTTCAATTCATCATTCAGAA 57.930 29.630 0.00 0.00 35.35 3.02
2103 2195 9.125906 CTTGTTCTTCAATTCATCATTCAGAAC 57.874 33.333 0.00 0.00 39.83 3.01
2105 2197 6.764308 TCTTCAATTCATCATTCAGAACCC 57.236 37.500 0.00 0.00 0.00 4.11
2106 2198 6.247676 TCTTCAATTCATCATTCAGAACCCA 58.752 36.000 0.00 0.00 0.00 4.51
2108 2200 6.271488 TCAATTCATCATTCAGAACCCAAC 57.729 37.500 0.00 0.00 0.00 3.77
2111 2203 7.614974 TCAATTCATCATTCAGAACCCAACATA 59.385 33.333 0.00 0.00 0.00 2.29
2112 2204 6.757897 TTCATCATTCAGAACCCAACATAC 57.242 37.500 0.00 0.00 0.00 2.39
2114 2206 6.425735 TCATCATTCAGAACCCAACATACAT 58.574 36.000 0.00 0.00 0.00 2.29
2115 2207 6.543465 TCATCATTCAGAACCCAACATACATC 59.457 38.462 0.00 0.00 0.00 3.06
2116 2208 5.192927 TCATTCAGAACCCAACATACATCC 58.807 41.667 0.00 0.00 0.00 3.51
2117 2209 4.649267 TTCAGAACCCAACATACATCCA 57.351 40.909 0.00 0.00 0.00 3.41
2118 2210 4.860802 TCAGAACCCAACATACATCCAT 57.139 40.909 0.00 0.00 0.00 3.41
2119 2211 5.191727 TCAGAACCCAACATACATCCATT 57.808 39.130 0.00 0.00 0.00 3.16
2120 2212 4.949238 TCAGAACCCAACATACATCCATTG 59.051 41.667 0.00 0.00 0.00 2.82
2121 2213 4.098349 CAGAACCCAACATACATCCATTGG 59.902 45.833 0.00 0.00 41.14 3.16
2122 2214 2.387757 ACCCAACATACATCCATTGGC 58.612 47.619 0.00 0.00 40.30 4.52
2124 2216 3.033184 CCCAACATACATCCATTGGCTT 58.967 45.455 0.00 0.00 40.30 4.35
2125 2217 3.181473 CCCAACATACATCCATTGGCTTG 60.181 47.826 0.00 0.92 40.30 4.01
2127 2219 4.081531 CCAACATACATCCATTGGCTTGTT 60.082 41.667 13.98 8.71 35.52 2.83
2128 2220 5.126869 CCAACATACATCCATTGGCTTGTTA 59.873 40.000 13.98 4.38 35.52 2.41
2129 2221 5.835113 ACATACATCCATTGGCTTGTTAC 57.165 39.130 13.98 0.00 0.00 2.50
2130 2222 4.644685 ACATACATCCATTGGCTTGTTACC 59.355 41.667 13.98 0.00 0.00 2.85
2132 2224 3.356290 ACATCCATTGGCTTGTTACCTC 58.644 45.455 0.00 0.00 0.00 3.85
2134 2226 3.737559 TCCATTGGCTTGTTACCTCAT 57.262 42.857 0.00 0.00 0.00 2.90
2135 2227 4.046286 TCCATTGGCTTGTTACCTCATT 57.954 40.909 0.00 0.00 0.00 2.57
2136 2228 4.415596 TCCATTGGCTTGTTACCTCATTT 58.584 39.130 0.00 0.00 0.00 2.32
2137 2229 4.462483 TCCATTGGCTTGTTACCTCATTTC 59.538 41.667 0.00 0.00 0.00 2.17
2138 2230 4.220382 CCATTGGCTTGTTACCTCATTTCA 59.780 41.667 0.00 0.00 0.00 2.69
2139 2231 5.404946 CATTGGCTTGTTACCTCATTTCAG 58.595 41.667 0.00 0.00 0.00 3.02
2140 2232 4.365514 TGGCTTGTTACCTCATTTCAGA 57.634 40.909 0.00 0.00 0.00 3.27
2142 2234 4.518970 TGGCTTGTTACCTCATTTCAGAAC 59.481 41.667 0.00 0.00 0.00 3.01
2143 2235 4.082733 GGCTTGTTACCTCATTTCAGAACC 60.083 45.833 0.00 0.00 0.00 3.62
2144 2236 4.082733 GCTTGTTACCTCATTTCAGAACCC 60.083 45.833 0.00 0.00 0.00 4.11
2146 2238 4.651778 TGTTACCTCATTTCAGAACCCAG 58.348 43.478 0.00 0.00 0.00 4.45
2147 2239 4.104102 TGTTACCTCATTTCAGAACCCAGT 59.896 41.667 0.00 0.00 0.00 4.00
2148 2240 5.308497 TGTTACCTCATTTCAGAACCCAGTA 59.692 40.000 0.00 0.00 0.00 2.74
2149 2241 6.012858 TGTTACCTCATTTCAGAACCCAGTAT 60.013 38.462 0.00 0.00 0.00 2.12
2150 2242 7.181305 TGTTACCTCATTTCAGAACCCAGTATA 59.819 37.037 0.00 0.00 0.00 1.47
2151 2243 5.990668 ACCTCATTTCAGAACCCAGTATAC 58.009 41.667 0.00 0.00 0.00 1.47
2152 2244 5.487488 ACCTCATTTCAGAACCCAGTATACA 59.513 40.000 5.50 0.00 0.00 2.29
2154 2246 6.708054 CCTCATTTCAGAACCCAGTATACATC 59.292 42.308 5.50 0.00 0.00 3.06
2157 2249 6.575244 TTTCAGAACCCAGTATACATCCAT 57.425 37.500 5.50 0.00 0.00 3.41
2158 2250 6.575244 TTCAGAACCCAGTATACATCCATT 57.425 37.500 5.50 0.00 0.00 3.16
2159 2251 5.928976 TCAGAACCCAGTATACATCCATTG 58.071 41.667 5.50 0.00 0.00 2.82
2160 2252 5.065914 CAGAACCCAGTATACATCCATTGG 58.934 45.833 5.50 2.71 0.00 3.16
2161 2253 3.508845 ACCCAGTATACATCCATTGGC 57.491 47.619 5.50 0.00 0.00 4.52
2162 2254 3.056080 ACCCAGTATACATCCATTGGCT 58.944 45.455 5.50 0.00 0.00 4.75
2163 2255 3.463329 ACCCAGTATACATCCATTGGCTT 59.537 43.478 5.50 0.00 0.00 4.35
2164 2256 3.822735 CCCAGTATACATCCATTGGCTTG 59.177 47.826 5.50 0.92 0.00 4.01
2165 2257 4.464008 CCAGTATACATCCATTGGCTTGT 58.536 43.478 5.50 13.47 0.00 3.16
2166 2258 4.889409 CCAGTATACATCCATTGGCTTGTT 59.111 41.667 13.98 7.18 0.00 2.83
2167 2259 6.061441 CCAGTATACATCCATTGGCTTGTTA 58.939 40.000 13.98 6.48 0.00 2.41
2168 2260 6.017109 CCAGTATACATCCATTGGCTTGTTAC 60.017 42.308 13.98 14.25 0.00 2.50
2169 2261 6.017109 CAGTATACATCCATTGGCTTGTTACC 60.017 42.308 13.98 5.33 0.00 2.85
2170 2262 3.456380 ACATCCATTGGCTTGTTACCT 57.544 42.857 0.00 0.00 0.00 3.08
2171 2263 3.778265 ACATCCATTGGCTTGTTACCTT 58.222 40.909 0.00 0.00 0.00 3.50
2172 2264 3.511146 ACATCCATTGGCTTGTTACCTTG 59.489 43.478 0.00 0.00 0.00 3.61
2174 2266 4.046286 TCCATTGGCTTGTTACCTTGAT 57.954 40.909 0.00 0.00 0.00 2.57
2175 2267 4.016444 TCCATTGGCTTGTTACCTTGATC 58.984 43.478 0.00 0.00 0.00 2.92
2177 2269 4.403432 CCATTGGCTTGTTACCTTGATCAT 59.597 41.667 0.00 0.00 0.00 2.45
2178 2270 5.105228 CCATTGGCTTGTTACCTTGATCATT 60.105 40.000 0.00 0.00 0.00 2.57
2179 2271 5.643379 TTGGCTTGTTACCTTGATCATTC 57.357 39.130 0.00 0.00 0.00 2.67
2180 2272 4.016444 TGGCTTGTTACCTTGATCATTCC 58.984 43.478 0.00 0.00 0.00 3.01
2181 2273 4.016444 GGCTTGTTACCTTGATCATTCCA 58.984 43.478 0.00 0.00 0.00 3.53
2183 2275 4.943705 GCTTGTTACCTTGATCATTCCAGA 59.056 41.667 0.00 0.00 0.00 3.86
2184 2276 5.415701 GCTTGTTACCTTGATCATTCCAGAA 59.584 40.000 0.00 0.00 0.00 3.02
2185 2277 6.623767 GCTTGTTACCTTGATCATTCCAGAAC 60.624 42.308 0.00 0.00 0.00 3.01
2186 2278 5.253330 TGTTACCTTGATCATTCCAGAACC 58.747 41.667 0.00 0.00 0.00 3.62
2187 2279 3.372440 ACCTTGATCATTCCAGAACCC 57.628 47.619 0.00 0.00 0.00 4.11
2188 2280 2.649312 ACCTTGATCATTCCAGAACCCA 59.351 45.455 0.00 0.00 0.00 4.51
2190 2282 3.308688 CCTTGATCATTCCAGAACCCAGT 60.309 47.826 0.00 0.00 0.00 4.00
2191 2283 4.080356 CCTTGATCATTCCAGAACCCAGTA 60.080 45.833 0.00 0.00 0.00 2.74
2192 2284 5.398353 CCTTGATCATTCCAGAACCCAGTAT 60.398 44.000 0.00 0.00 0.00 2.12
2193 2285 6.183361 CCTTGATCATTCCAGAACCCAGTATA 60.183 42.308 0.00 0.00 0.00 1.47
2195 2287 8.504811 TTGATCATTCCAGAACCCAGTATATA 57.495 34.615 0.00 0.00 0.00 0.86
2197 2289 8.762645 TGATCATTCCAGAACCCAGTATATATC 58.237 37.037 0.00 0.00 0.00 1.63
2198 2290 7.496346 TCATTCCAGAACCCAGTATATATCC 57.504 40.000 0.00 0.00 0.00 2.59
2199 2291 7.022496 TCATTCCAGAACCCAGTATATATCCA 58.978 38.462 0.00 0.00 0.00 3.41
2200 2292 7.684186 TCATTCCAGAACCCAGTATATATCCAT 59.316 37.037 0.00 0.00 0.00 3.41
2204 2296 7.515861 TCCAGAACCCAGTATATATCCATTGAA 59.484 37.037 0.00 0.00 0.00 2.69
2236 2328 9.691362 ACATTGATTATTCAAAACCAAGTGTAC 57.309 29.630 4.28 0.00 44.70 2.90
2242 2334 6.916360 ATTCAAAACCAAGTGTACATCCAT 57.084 33.333 0.00 0.00 0.00 3.41
2250 2342 7.301868 ACCAAGTGTACATCCATTGATTTTT 57.698 32.000 0.00 0.00 0.00 1.94
2272 2364 2.026822 TGGCCCTTCTTCAGTCAGAATC 60.027 50.000 0.00 0.00 35.25 2.52
2273 2365 2.026822 GGCCCTTCTTCAGTCAGAATCA 60.027 50.000 0.00 0.00 35.25 2.57
2280 2372 7.441760 CCCTTCTTCAGTCAGAATCATTCATAG 59.558 40.741 0.00 0.00 35.25 2.23
2312 2404 3.560636 TTTGCTAGAGCCATAGGTTCC 57.439 47.619 0.00 0.00 41.18 3.62
2317 2409 4.719773 TGCTAGAGCCATAGGTTCCTTTTA 59.280 41.667 0.00 0.00 41.18 1.52
2333 2425 8.318412 GGTTCCTTTTAATAATGTTCCATTGGT 58.682 33.333 1.86 0.00 0.00 3.67
2357 2449 9.750882 GGTAACATTTAGTTCTATCGTTTGTTC 57.249 33.333 0.00 0.00 41.64 3.18
2374 2467 6.566564 CGTTTGTTCAGATTGTATGCTGTTCT 60.567 38.462 0.00 0.00 33.90 3.01
2376 2469 5.550290 TGTTCAGATTGTATGCTGTTCTGA 58.450 37.500 6.75 6.75 40.63 3.27
2387 2480 8.389779 TGTATGCTGTTCTGAAATTCTTTACA 57.610 30.769 0.00 0.00 0.00 2.41
2425 2522 9.846248 GATATTTCTGTTTTACTCTTGCAATGT 57.154 29.630 0.00 4.99 0.00 2.71
2458 2555 1.285078 GGGAAAATGGGCCTAGACTGT 59.715 52.381 4.53 0.00 0.00 3.55
2557 2654 3.007723 TCCTTGCATCTGAGGCTATCATC 59.992 47.826 15.78 0.00 37.28 2.92
2635 2732 3.256383 TCCTTGTTCCATGTTCTGCATTG 59.744 43.478 0.00 0.00 35.19 2.82
2676 2775 6.861065 TCTCTGTTCATGGTTGTTAAACTC 57.139 37.500 0.00 0.00 36.48 3.01
2677 2776 6.353323 TCTCTGTTCATGGTTGTTAAACTCA 58.647 36.000 0.00 0.00 36.48 3.41
2678 2777 6.260050 TCTCTGTTCATGGTTGTTAAACTCAC 59.740 38.462 0.00 0.00 36.48 3.51
2679 2778 6.119536 TCTGTTCATGGTTGTTAAACTCACT 58.880 36.000 0.00 0.00 36.48 3.41
2680 2779 6.038161 TCTGTTCATGGTTGTTAAACTCACTG 59.962 38.462 0.00 0.00 36.48 3.66
2681 2780 5.650266 TGTTCATGGTTGTTAAACTCACTGT 59.350 36.000 0.00 0.00 36.48 3.55
2682 2781 6.183360 TGTTCATGGTTGTTAAACTCACTGTC 60.183 38.462 0.00 0.00 36.48 3.51
2683 2782 5.680619 TCATGGTTGTTAAACTCACTGTCT 58.319 37.500 0.00 0.00 36.48 3.41
2684 2783 5.527214 TCATGGTTGTTAAACTCACTGTCTG 59.473 40.000 0.00 0.00 36.48 3.51
2685 2784 3.625764 TGGTTGTTAAACTCACTGTCTGC 59.374 43.478 0.00 0.00 36.48 4.26
2686 2785 3.625764 GGTTGTTAAACTCACTGTCTGCA 59.374 43.478 0.00 0.00 36.48 4.41
2725 2829 6.922247 ATAAACATCTCATGACTCTTGCAG 57.078 37.500 0.00 0.00 0.00 4.41
2726 2830 3.977134 ACATCTCATGACTCTTGCAGT 57.023 42.857 0.00 0.00 38.45 4.40
2729 2833 3.309961 TCTCATGACTCTTGCAGTGAC 57.690 47.619 0.00 0.00 34.41 3.67
2794 2911 0.618981 ACTCCCTCCGTCCCAAAATC 59.381 55.000 0.00 0.00 0.00 2.17
2799 2916 1.271379 CCTCCGTCCCAAAATCAGTGT 60.271 52.381 0.00 0.00 0.00 3.55
2806 2923 3.253432 GTCCCAAAATCAGTGTCTCAACC 59.747 47.826 0.00 0.00 0.00 3.77
2809 2926 5.070001 CCCAAAATCAGTGTCTCAACCTTA 58.930 41.667 0.00 0.00 0.00 2.69
2810 2927 5.182001 CCCAAAATCAGTGTCTCAACCTTAG 59.818 44.000 0.00 0.00 0.00 2.18
2811 2928 5.765182 CCAAAATCAGTGTCTCAACCTTAGT 59.235 40.000 0.00 0.00 0.00 2.24
2813 2930 7.095187 CCAAAATCAGTGTCTCAACCTTAGTAC 60.095 40.741 0.00 0.00 0.00 2.73
2816 2933 5.839621 TCAGTGTCTCAACCTTAGTACAAC 58.160 41.667 0.00 0.00 0.00 3.32
2818 2935 6.097839 TCAGTGTCTCAACCTTAGTACAACTT 59.902 38.462 0.00 0.00 0.00 2.66
2822 2939 5.526111 GTCTCAACCTTAGTACAACTTTGCA 59.474 40.000 0.00 0.00 0.00 4.08
2823 2940 5.526111 TCTCAACCTTAGTACAACTTTGCAC 59.474 40.000 0.00 0.00 0.00 4.57
2824 2941 5.433526 TCAACCTTAGTACAACTTTGCACT 58.566 37.500 0.00 0.65 38.32 4.40
2826 2943 6.704493 TCAACCTTAGTACAACTTTGCACTAG 59.296 38.462 0.00 0.00 38.06 2.57
2828 2945 6.456501 ACCTTAGTACAACTTTGCACTAGAG 58.543 40.000 0.00 0.00 38.06 2.43
2829 2946 6.041751 ACCTTAGTACAACTTTGCACTAGAGT 59.958 38.462 0.00 2.80 38.06 3.24
2830 2947 6.929606 CCTTAGTACAACTTTGCACTAGAGTT 59.070 38.462 0.00 0.00 38.06 3.01
2831 2948 8.086522 CCTTAGTACAACTTTGCACTAGAGTTA 58.913 37.037 0.00 0.00 38.06 2.24
2832 2949 9.130312 CTTAGTACAACTTTGCACTAGAGTTAG 57.870 37.037 0.00 0.00 38.06 2.34
2833 2950 7.052142 AGTACAACTTTGCACTAGAGTTAGT 57.948 36.000 0.00 0.16 40.79 2.24
2834 2951 8.174733 AGTACAACTTTGCACTAGAGTTAGTA 57.825 34.615 0.00 0.00 38.05 1.82
2858 2975 7.703058 ATAAGTTGAGACACTTATTTTGGGG 57.297 36.000 1.05 0.00 44.30 4.96
2859 2976 3.826729 AGTTGAGACACTTATTTTGGGGC 59.173 43.478 0.00 0.00 0.00 5.80
2860 2977 3.517296 TGAGACACTTATTTTGGGGCA 57.483 42.857 0.00 0.00 0.00 5.36
2871 2988 0.118346 TTTGGGGCAGAGGGAGTAGA 59.882 55.000 0.00 0.00 0.00 2.59
2872 2989 0.343372 TTGGGGCAGAGGGAGTAGAT 59.657 55.000 0.00 0.00 0.00 1.98
2873 2990 0.105453 TGGGGCAGAGGGAGTAGATC 60.105 60.000 0.00 0.00 0.00 2.75
2876 2993 2.225394 GGGGCAGAGGGAGTAGATCATA 60.225 54.545 0.00 0.00 0.00 2.15
2877 2994 3.096092 GGGCAGAGGGAGTAGATCATAG 58.904 54.545 0.00 0.00 0.00 2.23
2879 2996 2.163412 GCAGAGGGAGTAGATCATAGCG 59.837 54.545 0.00 0.00 0.00 4.26
2880 2997 3.417101 CAGAGGGAGTAGATCATAGCGT 58.583 50.000 0.00 0.00 0.00 5.07
2881 2998 3.438781 CAGAGGGAGTAGATCATAGCGTC 59.561 52.174 0.00 0.00 0.00 5.19
2887 3004 2.052157 GTAGATCATAGCGTCGTTGCC 58.948 52.381 0.00 0.00 34.65 4.52
2888 3005 0.249489 AGATCATAGCGTCGTTGCCC 60.249 55.000 0.00 0.00 34.65 5.36
2893 3010 1.605058 ATAGCGTCGTTGCCCTCTGT 61.605 55.000 0.00 0.00 34.65 3.41
2917 3034 7.174080 TGTTTGTGTTATGCAATCTTAGTAGCA 59.826 33.333 0.00 0.00 41.73 3.49
2922 3039 7.491372 GTGTTATGCAATCTTAGTAGCACACTA 59.509 37.037 0.00 0.00 40.14 2.74
2926 3043 5.053145 GCAATCTTAGTAGCACACTAGCAT 58.947 41.667 0.00 0.00 40.83 3.79
2935 3052 3.027412 AGCACACTAGCATACTGTAGCT 58.973 45.455 13.56 13.56 44.55 3.32
2949 3066 3.067461 ACTGTAGCTTCGCTATCTCTTGG 59.933 47.826 0.00 0.00 43.30 3.61
2966 3083 4.643463 TCTTGGTGGCATAACGTCTTTAA 58.357 39.130 0.00 0.00 0.00 1.52
3030 3153 1.131126 CCTTGCACTTTGAGGTATGCG 59.869 52.381 0.00 0.00 41.07 4.73
3074 3197 6.118852 GGGGATAATATTCTGAGATGCTTCC 58.881 44.000 0.00 0.00 0.00 3.46
3091 3214 9.211485 AGATGCTTCCTTTTGTTTCATATTTTG 57.789 29.630 0.00 0.00 0.00 2.44
3140 3328 0.037590 TCCAAATACGTGGCAAGGCT 59.962 50.000 5.22 0.00 38.68 4.58
3161 3349 4.636206 GCTTATGGTTTACTGGTCTGAAGG 59.364 45.833 0.00 0.00 0.00 3.46
3172 3360 2.303022 TGGTCTGAAGGAGTCCATTGAC 59.697 50.000 12.86 12.94 42.09 3.18
3178 3378 4.454678 TGAAGGAGTCCATTGACATATGC 58.545 43.478 12.86 0.00 44.33 3.14
3180 3380 4.348863 AGGAGTCCATTGACATATGCTC 57.651 45.455 12.86 0.65 44.33 4.26
3185 3385 6.040166 GGAGTCCATTGACATATGCTCAAATT 59.960 38.462 18.34 6.58 44.33 1.82
3190 3390 9.797642 TCCATTGACATATGCTCAAATTATACT 57.202 29.630 18.34 4.56 31.48 2.12
3202 3402 9.330063 TGCTCAAATTATACTTTCTAGTGGATG 57.670 33.333 0.00 0.00 35.78 3.51
3224 3424 9.098355 GGATGTTTTATTGAAATTTAGGAAGGC 57.902 33.333 0.00 0.00 0.00 4.35
3227 3427 8.093927 TGTTTTATTGAAATTTAGGAAGGCCTG 58.906 33.333 5.69 0.00 46.45 4.85
3229 3429 5.921962 ATTGAAATTTAGGAAGGCCTGTC 57.078 39.130 5.69 6.18 46.45 3.51
3233 3433 2.806945 TTTAGGAAGGCCTGTCCATG 57.193 50.000 26.22 0.00 46.45 3.66
3236 3436 1.076485 GGAAGGCCTGTCCATGCAT 60.076 57.895 22.10 0.00 37.29 3.96
3242 3452 0.741927 GCCTGTCCATGCATTTTGGC 60.742 55.000 0.00 3.27 34.06 4.52
3261 3604 8.531622 TTTTGGCATGTTGTTTAGATTATGTG 57.468 30.769 0.00 0.00 0.00 3.21
3262 3605 6.832520 TGGCATGTTGTTTAGATTATGTGT 57.167 33.333 0.00 0.00 0.00 3.72
3273 3616 8.705134 TGTTTAGATTATGTGTTTCGTACTGTG 58.295 33.333 0.00 0.00 0.00 3.66
3285 3628 1.992667 CGTACTGTGTGACGCAATGAT 59.007 47.619 0.00 0.00 31.49 2.45
3313 3656 9.579768 CATACATTGCTATCTTCTGGACTATAC 57.420 37.037 0.00 0.00 0.00 1.47
3316 3660 9.368416 ACATTGCTATCTTCTGGACTATACTAA 57.632 33.333 0.00 0.00 0.00 2.24
3416 3760 1.208293 GTGTCTCACCAGGAATCCCTC 59.792 57.143 0.00 0.00 42.02 4.30
3459 3803 1.518903 GGCCACAGTCAAGTTCCAGC 61.519 60.000 0.00 0.00 0.00 4.85
3591 3935 5.699839 AGAAGAATTGGCAAAACGTATGTC 58.300 37.500 3.01 0.00 0.00 3.06
3615 3973 5.840243 TGTGCCCTCTGAATATTTTCATG 57.160 39.130 0.00 0.00 40.95 3.07
3637 3995 8.479689 TCATGAACATTTGGCTATTGATTGATT 58.520 29.630 0.00 0.00 0.00 2.57
3924 4287 1.742140 CTGCTCTGCCTGCTGTCAG 60.742 63.158 0.00 0.00 40.02 3.51
3925 4288 2.346739 GCTCTGCCTGCTGTCAGT 59.653 61.111 0.93 0.00 38.66 3.41
3999 4364 7.453838 GTCAGAATCTTATTTTACCGTGTGTC 58.546 38.462 0.00 0.00 0.00 3.67
4000 4365 6.592607 TCAGAATCTTATTTTACCGTGTGTCC 59.407 38.462 0.00 0.00 0.00 4.02
4003 4368 4.630111 TCTTATTTTACCGTGTGTCCGTT 58.370 39.130 0.00 0.00 0.00 4.44
4100 4468 3.554731 GGACGAGTTTTGTCTTTCGTTCT 59.445 43.478 0.00 0.00 45.23 3.01
4107 4514 5.875359 AGTTTTGTCTTTCGTTCTCACTTCT 59.125 36.000 0.00 0.00 0.00 2.85
4114 4521 2.248248 TCGTTCTCACTTCTCACCCAT 58.752 47.619 0.00 0.00 0.00 4.00
4124 4531 3.848975 ACTTCTCACCCATTTCTCTGGAT 59.151 43.478 0.00 0.00 38.69 3.41
4125 4532 4.290722 ACTTCTCACCCATTTCTCTGGATT 59.709 41.667 0.00 0.00 38.69 3.01
4132 4539 3.499918 CCCATTTCTCTGGATTGTATCGC 59.500 47.826 0.00 0.00 38.69 4.58
4137 4544 2.167693 TCTCTGGATTGTATCGCCGTTT 59.832 45.455 0.00 0.00 0.00 3.60
4138 4545 2.276201 TCTGGATTGTATCGCCGTTTG 58.724 47.619 0.00 0.00 0.00 2.93
4141 4548 0.028902 GATTGTATCGCCGTTTGCCC 59.971 55.000 0.00 0.00 36.24 5.36
4142 4549 0.678366 ATTGTATCGCCGTTTGCCCA 60.678 50.000 0.00 0.00 36.24 5.36
4143 4550 0.678366 TTGTATCGCCGTTTGCCCAT 60.678 50.000 0.00 0.00 36.24 4.00
4144 4551 1.092921 TGTATCGCCGTTTGCCCATC 61.093 55.000 0.00 0.00 36.24 3.51
4145 4552 0.814010 GTATCGCCGTTTGCCCATCT 60.814 55.000 0.00 0.00 36.24 2.90
4147 4554 3.814268 CGCCGTTTGCCCATCTGG 61.814 66.667 0.00 0.00 36.24 3.86
4161 4568 3.866651 CCATCTGGGACTGAAGTTACTG 58.133 50.000 0.00 0.00 40.32 2.74
4163 4570 4.263068 CCATCTGGGACTGAAGTTACTGTT 60.263 45.833 0.00 0.00 40.32 3.16
4165 4572 3.964688 TCTGGGACTGAAGTTACTGTTCA 59.035 43.478 0.00 0.00 32.07 3.18
4166 4573 4.407621 TCTGGGACTGAAGTTACTGTTCAA 59.592 41.667 0.00 0.00 33.56 2.69
4167 4574 4.703897 TGGGACTGAAGTTACTGTTCAAG 58.296 43.478 0.00 0.00 33.56 3.02
4168 4575 4.065789 GGGACTGAAGTTACTGTTCAAGG 58.934 47.826 0.00 0.00 33.56 3.61
4169 4576 4.444449 GGGACTGAAGTTACTGTTCAAGGT 60.444 45.833 0.00 0.00 33.56 3.50
4170 4577 4.511826 GGACTGAAGTTACTGTTCAAGGTG 59.488 45.833 0.00 0.00 33.56 4.00
4173 4580 3.211045 GAAGTTACTGTTCAAGGTGGCA 58.789 45.455 0.00 0.00 0.00 4.92
4175 4582 3.832527 AGTTACTGTTCAAGGTGGCATT 58.167 40.909 0.00 0.00 0.00 3.56
4179 4586 3.832527 ACTGTTCAAGGTGGCATTTACT 58.167 40.909 0.00 0.00 0.00 2.24
4205 4644 8.755696 AATTTTATATTTCAGTTTCAAGCGCA 57.244 26.923 11.47 0.00 0.00 6.09
4222 4661 1.090052 GCAGATAACTCCGTGGCCAC 61.090 60.000 26.78 26.78 0.00 5.01
4228 4667 1.412453 AACTCCGTGGCCACTAACCA 61.412 55.000 32.28 11.08 33.84 3.67
4235 4674 1.025812 TGGCCACTAACCACAAAACG 58.974 50.000 0.00 0.00 30.29 3.60
4247 4686 4.873817 ACCACAAAACGGCTATAAAAACC 58.126 39.130 0.00 0.00 0.00 3.27
4329 4788 1.920835 GCTCTCACCCCCTTCCAGT 60.921 63.158 0.00 0.00 0.00 4.00
4334 4793 3.647771 ACCCCCTTCCAGTTCGCC 61.648 66.667 0.00 0.00 0.00 5.54
4368 4827 3.043713 CGCTCTTCGGCAAGTGCA 61.044 61.111 17.40 0.00 45.60 4.57
4418 4877 3.547249 GAACGACGGCGAGGTGTCA 62.547 63.158 22.49 0.00 41.64 3.58
4607 5066 0.793617 TCAAGGTCCTCCTCTCCCTT 59.206 55.000 0.00 0.00 44.35 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.040990 TGTTGTGCAACTTCGTTAACG 57.959 42.857 21.85 21.85 41.67 3.18
3 4 4.654015 TCTTGTTGTGCAACTTCGTTAAC 58.346 39.130 14.97 0.00 41.67 2.01
4 5 4.948608 TCTTGTTGTGCAACTTCGTTAA 57.051 36.364 14.97 1.06 41.67 2.01
5 6 4.572795 TCATCTTGTTGTGCAACTTCGTTA 59.427 37.500 14.97 0.00 41.67 3.18
6 7 3.376859 TCATCTTGTTGTGCAACTTCGTT 59.623 39.130 14.97 0.00 41.67 3.85
8 9 3.607422 TCATCTTGTTGTGCAACTTCG 57.393 42.857 14.97 5.02 41.67 3.79
9 10 3.671928 GCATCATCTTGTTGTGCAACTTC 59.328 43.478 14.97 0.00 41.67 3.01
10 11 3.319972 AGCATCATCTTGTTGTGCAACTT 59.680 39.130 14.97 0.00 41.67 2.66
12 13 3.293311 AGCATCATCTTGTTGTGCAAC 57.707 42.857 8.01 8.01 41.50 4.17
13 14 4.277921 TGTAAGCATCATCTTGTTGTGCAA 59.722 37.500 0.00 0.00 38.23 4.08
14 15 3.819902 TGTAAGCATCATCTTGTTGTGCA 59.180 39.130 0.00 0.00 38.23 4.57
15 16 4.083110 AGTGTAAGCATCATCTTGTTGTGC 60.083 41.667 0.00 0.00 36.11 4.57
16 17 5.388111 CAGTGTAAGCATCATCTTGTTGTG 58.612 41.667 0.00 0.00 0.00 3.33
18 19 4.155462 AGCAGTGTAAGCATCATCTTGTTG 59.845 41.667 0.00 0.00 0.00 3.33
19 20 4.330250 AGCAGTGTAAGCATCATCTTGTT 58.670 39.130 0.00 0.00 0.00 2.83
20 21 3.937706 GAGCAGTGTAAGCATCATCTTGT 59.062 43.478 0.00 0.00 0.00 3.16
21 22 3.311871 GGAGCAGTGTAAGCATCATCTTG 59.688 47.826 0.00 0.00 0.00 3.02
23 24 2.770802 AGGAGCAGTGTAAGCATCATCT 59.229 45.455 0.00 0.00 0.00 2.90
24 25 2.871022 CAGGAGCAGTGTAAGCATCATC 59.129 50.000 0.00 0.00 0.00 2.92
25 26 2.502947 TCAGGAGCAGTGTAAGCATCAT 59.497 45.455 0.00 0.00 0.00 2.45
26 27 1.901833 TCAGGAGCAGTGTAAGCATCA 59.098 47.619 0.00 0.00 0.00 3.07
27 28 2.680312 TCAGGAGCAGTGTAAGCATC 57.320 50.000 0.00 0.00 0.00 3.91
28 29 2.238144 ACATCAGGAGCAGTGTAAGCAT 59.762 45.455 0.00 0.00 0.00 3.79
29 30 1.625315 ACATCAGGAGCAGTGTAAGCA 59.375 47.619 0.00 0.00 0.00 3.91
30 31 2.393271 ACATCAGGAGCAGTGTAAGC 57.607 50.000 0.00 0.00 0.00 3.09
32 33 3.366985 CGTGTACATCAGGAGCAGTGTAA 60.367 47.826 0.00 0.00 34.28 2.41
33 34 2.163613 CGTGTACATCAGGAGCAGTGTA 59.836 50.000 0.00 0.00 34.28 2.90
34 35 1.067565 CGTGTACATCAGGAGCAGTGT 60.068 52.381 0.00 0.00 34.28 3.55
35 36 1.202348 TCGTGTACATCAGGAGCAGTG 59.798 52.381 0.00 0.00 36.26 3.66
36 37 1.545841 TCGTGTACATCAGGAGCAGT 58.454 50.000 0.00 0.00 36.26 4.40
38 39 3.056179 TGAAATCGTGTACATCAGGAGCA 60.056 43.478 0.00 0.00 42.83 4.26
39 40 3.307242 GTGAAATCGTGTACATCAGGAGC 59.693 47.826 0.00 0.00 42.83 4.70
40 41 4.494484 TGTGAAATCGTGTACATCAGGAG 58.506 43.478 0.00 0.00 42.83 3.69
41 42 4.529109 TGTGAAATCGTGTACATCAGGA 57.471 40.909 0.00 0.00 43.54 3.86
42 43 6.925718 AGATATGTGAAATCGTGTACATCAGG 59.074 38.462 0.00 0.00 35.55 3.86
44 45 7.438160 GGAAGATATGTGAAATCGTGTACATCA 59.562 37.037 0.00 0.00 35.55 3.07
45 46 7.653713 AGGAAGATATGTGAAATCGTGTACATC 59.346 37.037 0.00 0.00 35.55 3.06
46 47 7.500992 AGGAAGATATGTGAAATCGTGTACAT 58.499 34.615 0.00 0.00 37.51 2.29
47 48 6.873997 AGGAAGATATGTGAAATCGTGTACA 58.126 36.000 0.00 0.00 0.00 2.90
48 49 8.867112 TTAGGAAGATATGTGAAATCGTGTAC 57.133 34.615 0.00 0.00 0.00 2.90
65 66 8.992349 TGATGGTTCTCAAAGATATTAGGAAGA 58.008 33.333 0.00 0.00 0.00 2.87
66 67 9.050601 GTGATGGTTCTCAAAGATATTAGGAAG 57.949 37.037 0.00 0.00 0.00 3.46
67 68 7.710907 CGTGATGGTTCTCAAAGATATTAGGAA 59.289 37.037 0.00 0.00 0.00 3.36
68 69 7.147724 ACGTGATGGTTCTCAAAGATATTAGGA 60.148 37.037 0.00 0.00 0.00 2.94
69 70 6.986817 ACGTGATGGTTCTCAAAGATATTAGG 59.013 38.462 0.00 0.00 0.00 2.69
70 71 7.706607 TGACGTGATGGTTCTCAAAGATATTAG 59.293 37.037 0.00 0.00 0.00 1.73
71 72 7.552459 TGACGTGATGGTTCTCAAAGATATTA 58.448 34.615 0.00 0.00 0.00 0.98
72 73 6.406370 TGACGTGATGGTTCTCAAAGATATT 58.594 36.000 0.00 0.00 0.00 1.28
74 75 5.400066 TGACGTGATGGTTCTCAAAGATA 57.600 39.130 0.00 0.00 0.00 1.98
75 76 4.271696 TGACGTGATGGTTCTCAAAGAT 57.728 40.909 0.00 0.00 0.00 2.40
76 77 3.744238 TGACGTGATGGTTCTCAAAGA 57.256 42.857 0.00 0.00 0.00 2.52
77 78 4.452114 TCATTGACGTGATGGTTCTCAAAG 59.548 41.667 0.00 0.00 0.00 2.77
78 79 4.213270 GTCATTGACGTGATGGTTCTCAAA 59.787 41.667 0.13 0.00 0.00 2.69
79 80 3.745975 GTCATTGACGTGATGGTTCTCAA 59.254 43.478 0.13 0.00 0.00 3.02
80 81 3.325870 GTCATTGACGTGATGGTTCTCA 58.674 45.455 0.13 0.00 0.00 3.27
81 82 3.999229 GTCATTGACGTGATGGTTCTC 57.001 47.619 0.13 0.00 0.00 2.87
93 94 0.237235 TTTTCGCCAGCGTCATTGAC 59.763 50.000 12.32 6.73 40.74 3.18
94 95 0.516877 CTTTTCGCCAGCGTCATTGA 59.483 50.000 12.32 0.00 40.74 2.57
95 96 0.516877 TCTTTTCGCCAGCGTCATTG 59.483 50.000 12.32 0.85 40.74 2.82
96 97 1.453155 ATCTTTTCGCCAGCGTCATT 58.547 45.000 12.32 0.00 40.74 2.57
97 98 1.131126 CAATCTTTTCGCCAGCGTCAT 59.869 47.619 12.32 0.00 40.74 3.06
98 99 0.516877 CAATCTTTTCGCCAGCGTCA 59.483 50.000 12.32 0.00 40.74 4.35
99 100 0.794605 GCAATCTTTTCGCCAGCGTC 60.795 55.000 12.32 0.00 40.74 5.19
100 101 1.210155 GCAATCTTTTCGCCAGCGT 59.790 52.632 12.32 0.00 40.74 5.07
101 102 0.109597 AAGCAATCTTTTCGCCAGCG 60.110 50.000 5.50 5.50 41.35 5.18
102 103 1.336240 ACAAGCAATCTTTTCGCCAGC 60.336 47.619 0.00 0.00 0.00 4.85
109 110 2.358898 ACAGCACGACAAGCAATCTTTT 59.641 40.909 0.00 0.00 0.00 2.27
110 111 1.949525 ACAGCACGACAAGCAATCTTT 59.050 42.857 0.00 0.00 0.00 2.52
112 113 0.870393 CACAGCACGACAAGCAATCT 59.130 50.000 0.00 0.00 0.00 2.40
113 114 0.110056 CCACAGCACGACAAGCAATC 60.110 55.000 0.00 0.00 0.00 2.67
115 116 1.153269 TCCACAGCACGACAAGCAA 60.153 52.632 0.00 0.00 0.00 3.91
116 117 1.887242 GTCCACAGCACGACAAGCA 60.887 57.895 0.00 0.00 0.00 3.91
117 118 1.230635 ATGTCCACAGCACGACAAGC 61.231 55.000 0.00 0.00 42.02 4.01
119 120 1.069358 TGTATGTCCACAGCACGACAA 59.931 47.619 0.00 0.00 42.02 3.18
120 121 0.676736 TGTATGTCCACAGCACGACA 59.323 50.000 0.00 0.00 42.85 4.35
121 122 1.726791 CTTGTATGTCCACAGCACGAC 59.273 52.381 0.00 0.00 0.00 4.34
122 123 1.616374 TCTTGTATGTCCACAGCACGA 59.384 47.619 0.00 0.00 0.00 4.35
123 124 1.995484 CTCTTGTATGTCCACAGCACG 59.005 52.381 0.00 0.00 0.00 5.34
125 126 3.070878 TCAACTCTTGTATGTCCACAGCA 59.929 43.478 0.00 0.00 0.00 4.41
126 127 3.664107 TCAACTCTTGTATGTCCACAGC 58.336 45.455 0.00 0.00 0.00 4.40
127 128 5.482006 TGATCAACTCTTGTATGTCCACAG 58.518 41.667 0.00 0.00 0.00 3.66
129 130 6.166279 TCTTGATCAACTCTTGTATGTCCAC 58.834 40.000 3.38 0.00 0.00 4.02
130 131 6.358974 TCTTGATCAACTCTTGTATGTCCA 57.641 37.500 3.38 0.00 0.00 4.02
131 132 7.099764 TCTTCTTGATCAACTCTTGTATGTCC 58.900 38.462 3.38 0.00 0.00 4.02
132 133 8.539770 TTCTTCTTGATCAACTCTTGTATGTC 57.460 34.615 3.38 0.00 0.00 3.06
133 134 8.153550 ACTTCTTCTTGATCAACTCTTGTATGT 58.846 33.333 3.38 0.00 0.00 2.29
134 135 8.545229 ACTTCTTCTTGATCAACTCTTGTATG 57.455 34.615 3.38 0.00 0.00 2.39
135 136 8.370940 TGACTTCTTCTTGATCAACTCTTGTAT 58.629 33.333 3.38 0.00 0.00 2.29
136 137 7.726216 TGACTTCTTCTTGATCAACTCTTGTA 58.274 34.615 3.38 0.00 0.00 2.41
137 138 6.586344 TGACTTCTTCTTGATCAACTCTTGT 58.414 36.000 3.38 0.00 0.00 3.16
138 139 7.351223 GTTGACTTCTTCTTGATCAACTCTTG 58.649 38.462 3.38 0.00 43.68 3.02
139 140 6.201806 CGTTGACTTCTTCTTGATCAACTCTT 59.798 38.462 3.38 0.00 44.45 2.85
141 142 5.463724 ACGTTGACTTCTTCTTGATCAACTC 59.536 40.000 3.38 0.00 44.45 3.01
142 143 5.360591 ACGTTGACTTCTTCTTGATCAACT 58.639 37.500 3.38 0.00 44.45 3.16
143 144 5.659048 ACGTTGACTTCTTCTTGATCAAC 57.341 39.130 3.38 5.53 43.62 3.18
144 145 5.051039 CGAACGTTGACTTCTTCTTGATCAA 60.051 40.000 5.00 8.12 0.00 2.57
145 146 4.444388 CGAACGTTGACTTCTTCTTGATCA 59.556 41.667 5.00 0.00 0.00 2.92
147 148 4.617959 TCGAACGTTGACTTCTTCTTGAT 58.382 39.130 5.00 0.00 0.00 2.57
148 149 4.036567 TCGAACGTTGACTTCTTCTTGA 57.963 40.909 5.00 0.00 0.00 3.02
149 150 3.182572 CCTCGAACGTTGACTTCTTCTTG 59.817 47.826 5.00 0.00 0.00 3.02
150 151 3.067742 TCCTCGAACGTTGACTTCTTCTT 59.932 43.478 5.00 0.00 0.00 2.52
151 152 2.621998 TCCTCGAACGTTGACTTCTTCT 59.378 45.455 5.00 0.00 0.00 2.85
153 154 2.100252 TGTCCTCGAACGTTGACTTCTT 59.900 45.455 5.00 0.00 0.00 2.52
155 156 2.129823 TGTCCTCGAACGTTGACTTC 57.870 50.000 5.00 0.00 0.00 3.01
157 158 2.035449 TCAATGTCCTCGAACGTTGACT 59.965 45.455 17.08 0.00 45.56 3.41
158 159 2.400399 TCAATGTCCTCGAACGTTGAC 58.600 47.619 17.08 7.59 45.56 3.18
161 162 1.616865 TCCTCAATGTCCTCGAACGTT 59.383 47.619 0.00 0.00 0.00 3.99
163 164 2.159240 TCATCCTCAATGTCCTCGAACG 60.159 50.000 0.00 0.00 36.68 3.95
164 165 3.526931 TCATCCTCAATGTCCTCGAAC 57.473 47.619 0.00 0.00 36.68 3.95
167 168 3.808466 TCTTCATCCTCAATGTCCTCG 57.192 47.619 0.00 0.00 36.68 4.63
168 169 5.350504 TCTTCTTCATCCTCAATGTCCTC 57.649 43.478 0.00 0.00 36.68 3.71
169 170 5.486775 TCTTCTTCTTCATCCTCAATGTCCT 59.513 40.000 0.00 0.00 36.68 3.85
170 171 5.738909 TCTTCTTCTTCATCCTCAATGTCC 58.261 41.667 0.00 0.00 36.68 4.02
171 172 7.011295 GTCATCTTCTTCTTCATCCTCAATGTC 59.989 40.741 0.00 0.00 36.68 3.06
172 173 6.822676 GTCATCTTCTTCTTCATCCTCAATGT 59.177 38.462 0.00 0.00 36.68 2.71
174 175 6.822676 GTGTCATCTTCTTCTTCATCCTCAAT 59.177 38.462 0.00 0.00 0.00 2.57
175 176 6.013898 AGTGTCATCTTCTTCTTCATCCTCAA 60.014 38.462 0.00 0.00 0.00 3.02
176 177 5.483231 AGTGTCATCTTCTTCTTCATCCTCA 59.517 40.000 0.00 0.00 0.00 3.86
177 178 5.976458 AGTGTCATCTTCTTCTTCATCCTC 58.024 41.667 0.00 0.00 0.00 3.71
178 179 5.721000 AGAGTGTCATCTTCTTCTTCATCCT 59.279 40.000 0.00 0.00 0.00 3.24
179 180 5.811613 CAGAGTGTCATCTTCTTCTTCATCC 59.188 44.000 0.00 0.00 0.00 3.51
180 181 5.811613 CCAGAGTGTCATCTTCTTCTTCATC 59.188 44.000 0.00 0.00 0.00 2.92
181 182 5.338219 CCCAGAGTGTCATCTTCTTCTTCAT 60.338 44.000 0.00 0.00 0.00 2.57
182 183 4.020751 CCCAGAGTGTCATCTTCTTCTTCA 60.021 45.833 0.00 0.00 0.00 3.02
183 184 4.502962 CCCAGAGTGTCATCTTCTTCTTC 58.497 47.826 0.00 0.00 0.00 2.87
184 185 3.262915 CCCCAGAGTGTCATCTTCTTCTT 59.737 47.826 0.00 0.00 0.00 2.52
185 186 2.836981 CCCCAGAGTGTCATCTTCTTCT 59.163 50.000 0.00 0.00 0.00 2.85
186 187 2.834549 TCCCCAGAGTGTCATCTTCTTC 59.165 50.000 0.00 0.00 0.00 2.87
189 190 3.922171 ATTCCCCAGAGTGTCATCTTC 57.078 47.619 0.00 0.00 0.00 2.87
190 191 4.383118 CGTAATTCCCCAGAGTGTCATCTT 60.383 45.833 0.00 0.00 0.00 2.40
191 192 3.133003 CGTAATTCCCCAGAGTGTCATCT 59.867 47.826 0.00 0.00 0.00 2.90
192 193 3.132289 TCGTAATTCCCCAGAGTGTCATC 59.868 47.826 0.00 0.00 0.00 2.92
193 194 3.104512 TCGTAATTCCCCAGAGTGTCAT 58.895 45.455 0.00 0.00 0.00 3.06
194 195 2.531771 TCGTAATTCCCCAGAGTGTCA 58.468 47.619 0.00 0.00 0.00 3.58
196 197 3.517901 TGAATCGTAATTCCCCAGAGTGT 59.482 43.478 0.00 0.00 40.57 3.55
197 198 4.122776 CTGAATCGTAATTCCCCAGAGTG 58.877 47.826 0.00 0.00 40.57 3.51
199 200 4.100189 AGTCTGAATCGTAATTCCCCAGAG 59.900 45.833 0.00 0.00 40.57 3.35
200 201 4.030913 AGTCTGAATCGTAATTCCCCAGA 58.969 43.478 0.00 0.00 40.57 3.86
201 202 4.122776 CAGTCTGAATCGTAATTCCCCAG 58.877 47.826 0.00 0.00 40.57 4.45
202 203 3.772572 TCAGTCTGAATCGTAATTCCCCA 59.227 43.478 0.00 0.00 40.57 4.96
203 204 4.402056 TCAGTCTGAATCGTAATTCCCC 57.598 45.455 0.00 0.00 40.57 4.81
204 205 5.927115 GGTATCAGTCTGAATCGTAATTCCC 59.073 44.000 6.64 0.00 40.57 3.97
206 207 8.543774 CAAAGGTATCAGTCTGAATCGTAATTC 58.456 37.037 6.64 0.00 41.48 2.17
207 208 7.011482 GCAAAGGTATCAGTCTGAATCGTAATT 59.989 37.037 6.64 0.00 0.00 1.40
208 209 6.480320 GCAAAGGTATCAGTCTGAATCGTAAT 59.520 38.462 6.64 0.00 0.00 1.89
209 210 5.810587 GCAAAGGTATCAGTCTGAATCGTAA 59.189 40.000 6.64 0.00 0.00 3.18
210 211 5.348986 GCAAAGGTATCAGTCTGAATCGTA 58.651 41.667 6.64 0.00 0.00 3.43
213 214 4.333926 GTGGCAAAGGTATCAGTCTGAATC 59.666 45.833 6.64 3.06 0.00 2.52
215 216 3.559171 GGTGGCAAAGGTATCAGTCTGAA 60.559 47.826 6.64 0.00 0.00 3.02
217 218 2.026822 AGGTGGCAAAGGTATCAGTCTG 60.027 50.000 0.00 0.00 0.00 3.51
218 219 2.237392 GAGGTGGCAAAGGTATCAGTCT 59.763 50.000 0.00 0.00 0.00 3.24
219 220 2.027192 TGAGGTGGCAAAGGTATCAGTC 60.027 50.000 0.00 0.00 0.00 3.51
220 221 1.985159 TGAGGTGGCAAAGGTATCAGT 59.015 47.619 0.00 0.00 0.00 3.41
223 224 4.516698 CACATATGAGGTGGCAAAGGTATC 59.483 45.833 10.38 0.00 32.65 2.24
224 225 4.079787 ACACATATGAGGTGGCAAAGGTAT 60.080 41.667 10.38 0.00 40.54 2.73
231 232 2.172293 TGCATACACATATGAGGTGGCA 59.828 45.455 10.38 16.31 40.75 4.92
248 249 5.362143 TGCTACTTATGAAGAGAGAGTGCAT 59.638 40.000 0.00 0.00 0.00 3.96
249 250 4.706962 TGCTACTTATGAAGAGAGAGTGCA 59.293 41.667 0.00 0.00 0.00 4.57
250 251 5.255710 TGCTACTTATGAAGAGAGAGTGC 57.744 43.478 0.00 0.00 0.00 4.40
251 252 7.487484 TCAATGCTACTTATGAAGAGAGAGTG 58.513 38.462 0.00 0.00 0.00 3.51
265 266 9.511272 TGCTTGATGATATTATCAATGCTACTT 57.489 29.630 26.14 0.00 43.80 2.24
271 272 9.608617 GACACTTGCTTGATGATATTATCAATG 57.391 33.333 19.78 16.83 43.80 2.82
274 275 7.042523 CGTGACACTTGCTTGATGATATTATCA 60.043 37.037 8.76 8.76 44.55 2.15
275 276 7.169813 TCGTGACACTTGCTTGATGATATTATC 59.830 37.037 3.68 0.55 0.00 1.75
278 279 5.178061 TCGTGACACTTGCTTGATGATATT 58.822 37.500 3.68 0.00 0.00 1.28
291 292 5.113383 TGTGTAATCAAACTCGTGACACTT 58.887 37.500 3.68 0.00 0.00 3.16
370 374 7.120726 GGACCATGTAATTTATATTTCCCTCGG 59.879 40.741 0.00 0.00 0.00 4.63
422 426 8.533569 TCATAAGAAAAACTTGTCTTTCCCTT 57.466 30.769 0.28 0.00 39.38 3.95
423 427 7.998964 TCTCATAAGAAAAACTTGTCTTTCCCT 59.001 33.333 0.28 0.00 39.38 4.20
424 428 8.166422 TCTCATAAGAAAAACTTGTCTTTCCC 57.834 34.615 0.28 0.00 39.38 3.97
479 483 4.647291 ATTTCTGCGAAAAGTACGAGTG 57.353 40.909 7.59 0.00 0.00 3.51
489 493 5.777802 TGATTTGGCTAAATTTCTGCGAAA 58.222 33.333 19.92 19.92 36.66 3.46
496 500 8.321650 TGGTTCAATTGATTTGGCTAAATTTC 57.678 30.769 9.40 0.00 36.66 2.17
504 508 2.289569 TGGCTGGTTCAATTGATTTGGC 60.290 45.455 9.40 12.22 35.92 4.52
558 562 1.282157 AGGTGGCTGGTTCAATACTCC 59.718 52.381 0.00 0.00 0.00 3.85
560 564 3.525800 AAAGGTGGCTGGTTCAATACT 57.474 42.857 0.00 0.00 0.00 2.12
590 599 8.040132 CCAGAAAATAAAGGTGGCATATCAAAA 58.960 33.333 0.00 0.00 0.00 2.44
591 600 7.364585 CCCAGAAAATAAAGGTGGCATATCAAA 60.365 37.037 0.00 0.00 0.00 2.69
592 601 6.098124 CCCAGAAAATAAAGGTGGCATATCAA 59.902 38.462 0.00 0.00 0.00 2.57
593 602 5.598005 CCCAGAAAATAAAGGTGGCATATCA 59.402 40.000 0.00 0.00 0.00 2.15
594 603 5.011023 CCCCAGAAAATAAAGGTGGCATATC 59.989 44.000 0.00 0.00 0.00 1.63
595 604 4.901250 CCCCAGAAAATAAAGGTGGCATAT 59.099 41.667 0.00 0.00 0.00 1.78
596 605 4.285863 CCCCAGAAAATAAAGGTGGCATA 58.714 43.478 0.00 0.00 0.00 3.14
597 606 3.106827 CCCCAGAAAATAAAGGTGGCAT 58.893 45.455 0.00 0.00 0.00 4.40
598 607 2.534990 CCCCAGAAAATAAAGGTGGCA 58.465 47.619 0.00 0.00 0.00 4.92
601 610 4.040339 ACTTTGCCCCAGAAAATAAAGGTG 59.960 41.667 0.00 0.00 31.36 4.00
602 611 4.040339 CACTTTGCCCCAGAAAATAAAGGT 59.960 41.667 0.00 0.00 31.36 3.50
603 612 4.283212 TCACTTTGCCCCAGAAAATAAAGG 59.717 41.667 0.00 0.00 31.36 3.11
604 613 5.467035 TCACTTTGCCCCAGAAAATAAAG 57.533 39.130 0.00 0.00 0.00 1.85
605 614 5.454045 GGTTCACTTTGCCCCAGAAAATAAA 60.454 40.000 0.00 0.00 0.00 1.40
606 615 4.039852 GGTTCACTTTGCCCCAGAAAATAA 59.960 41.667 0.00 0.00 0.00 1.40
607 616 3.576550 GGTTCACTTTGCCCCAGAAAATA 59.423 43.478 0.00 0.00 0.00 1.40
680 710 4.440940 GCCGGAAGTTTTCTTTTTCCTTCA 60.441 41.667 5.05 0.00 40.61 3.02
725 755 1.334869 CTGTGGGCTTGAACTTGACAC 59.665 52.381 0.00 0.00 0.00 3.67
726 756 1.679139 CTGTGGGCTTGAACTTGACA 58.321 50.000 0.00 0.00 0.00 3.58
1046 1078 3.683937 CCCGCACCCCAAAGCAAG 61.684 66.667 0.00 0.00 0.00 4.01
1081 1113 5.422012 TGCTGGATCACATAGTTAAGAGACA 59.578 40.000 0.00 0.00 0.00 3.41
1125 1157 2.033141 AGTCGCCACAGCAGCAAT 59.967 55.556 0.00 0.00 39.83 3.56
1218 1250 2.045926 ACCAAGGATGCGAGGCAC 60.046 61.111 0.00 0.00 43.04 5.01
1320 1353 8.473219 TGACAAGACAGATCATATATAGCATCC 58.527 37.037 0.00 0.00 0.00 3.51
1332 1365 3.758755 AGCAACTGACAAGACAGATCA 57.241 42.857 6.55 0.00 40.63 2.92
1338 1376 7.201565 GGAAATGTATCTAGCAACTGACAAGAC 60.202 40.741 0.00 0.00 0.00 3.01
1397 1435 2.496070 ACAGCTTTCTATGGACAGCGTA 59.504 45.455 11.06 0.00 46.42 4.42
1407 1454 2.918712 ATGCCGCTACAGCTTTCTAT 57.081 45.000 0.00 0.00 39.32 1.98
1443 1492 2.037136 AAGCTTGCTGCCGCTACAG 61.037 57.895 12.87 0.00 44.23 2.74
1546 1595 3.872603 AGCAGACACAACGGGGCA 61.873 61.111 0.00 0.00 0.00 5.36
1576 1625 4.281435 TCACAGCAATTGAACATCCACATT 59.719 37.500 10.34 0.00 0.00 2.71
1579 1628 3.921119 TCACAGCAATTGAACATCCAC 57.079 42.857 10.34 0.00 0.00 4.02
1696 1788 3.511146 AGGTGCCAATAAAACATGACCTG 59.489 43.478 0.00 0.00 31.27 4.00
1731 1823 8.988060 TGACAATGGAGGTCAAGTTATATTCTA 58.012 33.333 0.00 0.00 41.96 2.10
1744 1836 2.119801 AGTGCATGACAATGGAGGTC 57.880 50.000 0.00 0.00 34.42 3.85
1920 2012 2.752903 ACTGAAACGCTTGTCCTTTTGT 59.247 40.909 0.00 0.00 0.00 2.83
2039 2131 6.199719 GGTTTCAGCACAAGAGAAATCAAAAG 59.800 38.462 0.00 0.00 33.66 2.27
2044 2136 4.836125 TGGTTTCAGCACAAGAGAAATC 57.164 40.909 0.00 0.00 34.23 2.17
2050 2142 4.713553 TGAACTATGGTTTCAGCACAAGA 58.286 39.130 0.00 0.00 35.58 3.02
2063 2155 7.496529 TGAAGAACAAGAAACTGAACTATGG 57.503 36.000 0.00 0.00 0.00 2.74
2090 2182 5.814481 TGTATGTTGGGTTCTGAATGATGA 58.186 37.500 0.00 0.00 0.00 2.92
2091 2183 6.238842 GGATGTATGTTGGGTTCTGAATGATG 60.239 42.308 0.00 0.00 0.00 3.07
2092 2184 5.829924 GGATGTATGTTGGGTTCTGAATGAT 59.170 40.000 0.00 0.00 0.00 2.45
2093 2185 5.192927 GGATGTATGTTGGGTTCTGAATGA 58.807 41.667 0.00 0.00 0.00 2.57
2094 2186 4.949238 TGGATGTATGTTGGGTTCTGAATG 59.051 41.667 0.00 0.00 0.00 2.67
2100 2192 3.181476 GCCAATGGATGTATGTTGGGTTC 60.181 47.826 2.05 0.00 41.05 3.62
2101 2193 2.765699 GCCAATGGATGTATGTTGGGTT 59.234 45.455 2.05 0.00 41.05 4.11
2102 2194 2.024080 AGCCAATGGATGTATGTTGGGT 60.024 45.455 2.05 2.17 44.87 4.51
2103 2195 2.669781 AGCCAATGGATGTATGTTGGG 58.330 47.619 2.05 0.00 41.05 4.12
2105 2197 4.724074 ACAAGCCAATGGATGTATGTTG 57.276 40.909 2.05 0.00 0.00 3.33
2106 2198 5.127031 GGTAACAAGCCAATGGATGTATGTT 59.873 40.000 2.05 7.42 34.02 2.71
2108 2200 4.889409 AGGTAACAAGCCAATGGATGTATG 59.111 41.667 2.05 0.00 41.41 2.39
2111 2203 3.245229 TGAGGTAACAAGCCAATGGATGT 60.245 43.478 2.05 4.18 41.41 3.06
2112 2204 3.355378 TGAGGTAACAAGCCAATGGATG 58.645 45.455 2.05 3.45 41.41 3.51
2114 2206 3.737559 ATGAGGTAACAAGCCAATGGA 57.262 42.857 2.05 0.00 41.41 3.41
2115 2207 4.220382 TGAAATGAGGTAACAAGCCAATGG 59.780 41.667 0.00 0.00 41.41 3.16
2116 2208 5.183713 TCTGAAATGAGGTAACAAGCCAATG 59.816 40.000 0.00 0.00 41.41 2.82
2117 2209 5.324409 TCTGAAATGAGGTAACAAGCCAAT 58.676 37.500 0.00 0.00 41.41 3.16
2118 2210 4.724399 TCTGAAATGAGGTAACAAGCCAA 58.276 39.130 0.00 0.00 41.41 4.52
2119 2211 4.365514 TCTGAAATGAGGTAACAAGCCA 57.634 40.909 0.00 0.00 41.41 4.75
2120 2212 4.082733 GGTTCTGAAATGAGGTAACAAGCC 60.083 45.833 0.00 0.00 41.41 4.35
2121 2213 4.082733 GGGTTCTGAAATGAGGTAACAAGC 60.083 45.833 0.00 0.00 41.41 4.01
2122 2214 5.070001 TGGGTTCTGAAATGAGGTAACAAG 58.930 41.667 0.00 0.00 41.41 3.16
2124 2216 4.104102 ACTGGGTTCTGAAATGAGGTAACA 59.896 41.667 0.00 0.00 41.41 2.41
2125 2217 4.652822 ACTGGGTTCTGAAATGAGGTAAC 58.347 43.478 0.00 0.00 0.00 2.50
2127 2219 6.670464 TGTATACTGGGTTCTGAAATGAGGTA 59.330 38.462 4.17 0.00 0.00 3.08
2128 2220 5.487488 TGTATACTGGGTTCTGAAATGAGGT 59.513 40.000 4.17 0.00 0.00 3.85
2129 2221 5.989477 TGTATACTGGGTTCTGAAATGAGG 58.011 41.667 4.17 0.00 0.00 3.86
2130 2222 6.708054 GGATGTATACTGGGTTCTGAAATGAG 59.292 42.308 4.17 0.00 0.00 2.90
2132 2224 6.356556 TGGATGTATACTGGGTTCTGAAATG 58.643 40.000 4.17 0.00 0.00 2.32
2134 2226 6.575244 ATGGATGTATACTGGGTTCTGAAA 57.425 37.500 4.17 0.00 0.00 2.69
2135 2227 6.356556 CAATGGATGTATACTGGGTTCTGAA 58.643 40.000 4.17 0.00 0.00 3.02
2136 2228 5.163205 CCAATGGATGTATACTGGGTTCTGA 60.163 44.000 4.17 0.00 0.00 3.27
2137 2229 5.065914 CCAATGGATGTATACTGGGTTCTG 58.934 45.833 4.17 0.00 0.00 3.02
2138 2230 4.446311 GCCAATGGATGTATACTGGGTTCT 60.446 45.833 2.05 0.00 0.00 3.01
2139 2231 3.821033 GCCAATGGATGTATACTGGGTTC 59.179 47.826 2.05 0.00 0.00 3.62
2140 2232 3.463329 AGCCAATGGATGTATACTGGGTT 59.537 43.478 2.05 0.00 30.77 4.11
2142 2234 3.795688 AGCCAATGGATGTATACTGGG 57.204 47.619 2.05 0.00 0.00 4.45
2143 2235 4.464008 ACAAGCCAATGGATGTATACTGG 58.536 43.478 2.05 3.44 0.00 4.00
2144 2236 6.017109 GGTAACAAGCCAATGGATGTATACTG 60.017 42.308 2.05 0.00 0.00 2.74
2146 2238 6.062095 AGGTAACAAGCCAATGGATGTATAC 58.938 40.000 2.05 11.38 41.41 1.47
2147 2239 6.260700 AGGTAACAAGCCAATGGATGTATA 57.739 37.500 2.05 0.86 41.41 1.47
2148 2240 5.129368 AGGTAACAAGCCAATGGATGTAT 57.871 39.130 2.05 1.74 41.41 2.29
2149 2241 4.584638 AGGTAACAAGCCAATGGATGTA 57.415 40.909 2.05 0.00 41.41 2.29
2150 2242 3.456380 AGGTAACAAGCCAATGGATGT 57.544 42.857 2.05 4.18 41.41 3.06
2151 2243 3.763360 TCAAGGTAACAAGCCAATGGATG 59.237 43.478 2.05 3.45 41.41 3.51
2152 2244 4.046286 TCAAGGTAACAAGCCAATGGAT 57.954 40.909 2.05 0.00 41.41 3.41
2154 2246 3.763360 TGATCAAGGTAACAAGCCAATGG 59.237 43.478 0.00 0.00 41.41 3.16
2157 2249 4.462483 GGAATGATCAAGGTAACAAGCCAA 59.538 41.667 0.00 0.00 41.41 4.52
2158 2250 4.016444 GGAATGATCAAGGTAACAAGCCA 58.984 43.478 0.00 0.00 41.41 4.75
2159 2251 4.016444 TGGAATGATCAAGGTAACAAGCC 58.984 43.478 0.00 0.00 41.41 4.35
2160 2252 4.943705 TCTGGAATGATCAAGGTAACAAGC 59.056 41.667 0.00 0.00 41.41 4.01
2161 2253 6.127897 GGTTCTGGAATGATCAAGGTAACAAG 60.128 42.308 0.00 0.00 41.41 3.16
2162 2254 5.710099 GGTTCTGGAATGATCAAGGTAACAA 59.290 40.000 0.00 0.00 41.41 2.83
2163 2255 5.253330 GGTTCTGGAATGATCAAGGTAACA 58.747 41.667 0.00 0.00 41.41 2.41
2164 2256 4.640647 GGGTTCTGGAATGATCAAGGTAAC 59.359 45.833 0.00 0.26 0.00 2.50
2165 2257 4.290985 TGGGTTCTGGAATGATCAAGGTAA 59.709 41.667 0.00 0.00 0.00 2.85
2166 2258 3.849574 TGGGTTCTGGAATGATCAAGGTA 59.150 43.478 0.00 0.00 0.00 3.08
2167 2259 2.649312 TGGGTTCTGGAATGATCAAGGT 59.351 45.455 0.00 0.00 0.00 3.50
2168 2260 3.285484 CTGGGTTCTGGAATGATCAAGG 58.715 50.000 0.00 0.00 0.00 3.61
2169 2261 3.960571 ACTGGGTTCTGGAATGATCAAG 58.039 45.455 0.00 0.00 0.00 3.02
2170 2262 5.715439 ATACTGGGTTCTGGAATGATCAA 57.285 39.130 0.00 0.00 0.00 2.57
2171 2263 8.685257 ATATATACTGGGTTCTGGAATGATCA 57.315 34.615 0.00 0.00 0.00 2.92
2172 2264 8.207545 GGATATATACTGGGTTCTGGAATGATC 58.792 40.741 0.00 0.00 0.00 2.92
2174 2266 7.022496 TGGATATATACTGGGTTCTGGAATGA 58.978 38.462 0.00 0.00 0.00 2.57
2175 2267 7.257790 TGGATATATACTGGGTTCTGGAATG 57.742 40.000 0.00 0.00 0.00 2.67
2177 2269 7.515861 TCAATGGATATATACTGGGTTCTGGAA 59.484 37.037 0.00 0.00 0.00 3.53
2178 2270 7.022496 TCAATGGATATATACTGGGTTCTGGA 58.978 38.462 0.00 0.00 0.00 3.86
2179 2271 7.257790 TCAATGGATATATACTGGGTTCTGG 57.742 40.000 0.00 0.00 0.00 3.86
2180 2272 9.745018 AATTCAATGGATATATACTGGGTTCTG 57.255 33.333 0.00 0.00 0.00 3.02
2181 2273 9.745018 CAATTCAATGGATATATACTGGGTTCT 57.255 33.333 0.00 0.00 0.00 3.01
2183 2275 9.881773 AACAATTCAATGGATATATACTGGGTT 57.118 29.630 0.00 0.00 0.00 4.11
2218 2310 8.303156 CAATGGATGTACACTTGGTTTTGAATA 58.697 33.333 0.00 0.00 0.00 1.75
2250 2342 1.434188 TCTGACTGAAGAAGGGCCAA 58.566 50.000 6.18 0.00 0.00 4.52
2252 2344 2.026822 TGATTCTGACTGAAGAAGGGCC 60.027 50.000 0.00 0.00 39.47 5.80
2253 2345 3.340814 TGATTCTGACTGAAGAAGGGC 57.659 47.619 1.14 0.00 39.47 5.19
2254 2346 5.494724 TGAATGATTCTGACTGAAGAAGGG 58.505 41.667 6.73 0.00 39.47 3.95
2255 2347 8.202811 TCTATGAATGATTCTGACTGAAGAAGG 58.797 37.037 6.73 0.00 39.47 3.46
2256 2348 9.767228 ATCTATGAATGATTCTGACTGAAGAAG 57.233 33.333 6.73 0.00 39.47 2.85
2257 2349 9.543783 CATCTATGAATGATTCTGACTGAAGAA 57.456 33.333 6.73 1.26 40.36 2.52
2258 2350 7.656542 GCATCTATGAATGATTCTGACTGAAGA 59.343 37.037 6.73 0.29 38.18 2.87
2295 2387 3.847671 AAAGGAACCTATGGCTCTAGC 57.152 47.619 0.00 0.00 41.14 3.42
2298 2390 8.282256 ACATTATTAAAAGGAACCTATGGCTCT 58.718 33.333 0.00 0.00 0.00 4.09
2338 2430 9.268268 ACAATCTGAACAAACGATAGAACTAAA 57.732 29.630 0.00 0.00 41.38 1.85
2345 2437 7.121911 CAGCATACAATCTGAACAAACGATAG 58.878 38.462 0.00 0.00 35.58 2.08
2350 2442 6.580041 CAGAACAGCATACAATCTGAACAAAC 59.420 38.462 0.00 0.00 39.85 2.93
2357 2449 7.759465 AGAATTTCAGAACAGCATACAATCTG 58.241 34.615 0.00 0.00 39.04 2.90
2396 2489 8.846943 TGCAAGAGTAAAACAGAAATATCAGA 57.153 30.769 0.00 0.00 0.00 3.27
2411 2504 5.956068 TGCATACAACATTGCAAGAGTAA 57.044 34.783 4.94 0.00 45.30 2.24
2425 2522 2.300956 TTTTCCCTGCCTGCATACAA 57.699 45.000 0.00 0.00 0.00 2.41
2458 2555 6.619437 TCTTCTTAAGGGATTCCACATCCATA 59.381 38.462 4.80 0.00 39.93 2.74
2557 2654 1.065854 AGAAGTCGGGGAATCTGCTTG 60.066 52.381 0.00 0.00 0.00 4.01
2635 2732 3.007398 AGAGATCACACCAACAGTCTTCC 59.993 47.826 0.00 0.00 0.00 3.46
2698 2802 9.399797 TGCAAGAGTCATGAGATGTTTATTTAT 57.600 29.630 0.00 0.00 0.00 1.40
2716 2820 1.971481 TGCAATGTCACTGCAAGAGT 58.029 45.000 6.47 0.00 46.47 3.24
2725 2829 6.683974 ACCTATGACTAAATGCAATGTCAC 57.316 37.500 13.77 0.00 41.37 3.67
2726 2830 8.978874 ATAACCTATGACTAAATGCAATGTCA 57.021 30.769 13.83 13.83 42.50 3.58
2759 2864 3.785887 AGGGAGTATTTCATAACCTGGCA 59.214 43.478 0.00 0.00 0.00 4.92
2794 2911 5.844004 AGTTGTACTAAGGTTGAGACACTG 58.156 41.667 0.00 0.00 0.00 3.66
2799 2916 5.526111 GTGCAAAGTTGTACTAAGGTTGAGA 59.474 40.000 5.17 0.00 40.10 3.27
2810 2927 8.983307 ATACTAACTCTAGTGCAAAGTTGTAC 57.017 34.615 12.68 4.30 42.99 2.90
2813 2930 9.640963 ACTTATACTAACTCTAGTGCAAAGTTG 57.359 33.333 12.68 7.40 38.85 3.16
2816 2933 9.856488 TCAACTTATACTAACTCTAGTGCAAAG 57.144 33.333 0.00 0.00 38.85 2.77
2818 2935 9.239551 TCTCAACTTATACTAACTCTAGTGCAA 57.760 33.333 0.00 0.00 38.85 4.08
2822 2939 9.962809 AGTGTCTCAACTTATACTAACTCTAGT 57.037 33.333 0.00 0.00 41.43 2.57
2858 2975 2.163412 CGCTATGATCTACTCCCTCTGC 59.837 54.545 0.00 0.00 0.00 4.26
2859 2976 3.417101 ACGCTATGATCTACTCCCTCTG 58.583 50.000 0.00 0.00 0.00 3.35
2860 2977 3.681593 GACGCTATGATCTACTCCCTCT 58.318 50.000 0.00 0.00 0.00 3.69
2871 2988 0.249489 GAGGGCAACGACGCTATGAT 60.249 55.000 0.00 0.00 32.19 2.45
2872 2989 1.141019 GAGGGCAACGACGCTATGA 59.859 57.895 0.00 0.00 32.19 2.15
2873 2990 1.141881 AGAGGGCAACGACGCTATG 59.858 57.895 0.00 0.00 32.19 2.23
2876 2993 2.660258 AAACAGAGGGCAACGACGCT 62.660 55.000 0.00 0.00 35.20 5.07
2877 2994 2.251642 AAACAGAGGGCAACGACGC 61.252 57.895 0.00 0.00 37.60 5.19
2879 2996 0.307760 CACAAACAGAGGGCAACGAC 59.692 55.000 0.00 0.00 37.60 4.34
2880 2997 0.107410 ACACAAACAGAGGGCAACGA 60.107 50.000 0.00 0.00 37.60 3.85
2881 2998 0.738389 AACACAAACAGAGGGCAACG 59.262 50.000 0.00 0.00 37.60 4.10
2887 3004 5.633830 AGATTGCATAACACAAACAGAGG 57.366 39.130 0.00 0.00 0.00 3.69
2888 3005 7.810658 ACTAAGATTGCATAACACAAACAGAG 58.189 34.615 0.00 0.00 0.00 3.35
2893 3010 7.174080 TGTGCTACTAAGATTGCATAACACAAA 59.826 33.333 0.00 0.00 37.76 2.83
2917 3034 4.294416 CGAAGCTACAGTATGCTAGTGT 57.706 45.455 5.32 8.20 42.53 3.55
2935 3052 0.901827 TGCCACCAAGAGATAGCGAA 59.098 50.000 0.00 0.00 0.00 4.70
2949 3066 8.959734 AAATAAAGTTAAAGACGTTATGCCAC 57.040 30.769 0.00 0.00 40.51 5.01
3030 3153 4.580580 CCCCAATGCTTTCTTCATAGGTAC 59.419 45.833 0.00 0.00 0.00 3.34
3074 3197 7.632721 ACTTGCAGCAAAATATGAAACAAAAG 58.367 30.769 9.65 0.00 0.00 2.27
3091 3214 0.538287 AGGGAACAAGGACTTGCAGC 60.538 55.000 11.73 2.12 44.03 5.25
3128 3252 0.251165 AACCATAAGCCTTGCCACGT 60.251 50.000 0.00 0.00 0.00 4.49
3129 3253 0.887933 AAACCATAAGCCTTGCCACG 59.112 50.000 0.00 0.00 0.00 4.94
3140 3328 5.546499 ACTCCTTCAGACCAGTAAACCATAA 59.454 40.000 0.00 0.00 0.00 1.90
3161 3349 6.630444 ATTTGAGCATATGTCAATGGACTC 57.370 37.500 16.36 8.08 44.61 3.36
3202 3402 8.094548 ACAGGCCTTCCTAAATTTCAATAAAAC 58.905 33.333 0.00 0.00 41.93 2.43
3224 3424 0.609151 TGCCAAAATGCATGGACAGG 59.391 50.000 9.06 4.51 40.56 4.00
3233 3433 6.484818 AATCTAAACAACATGCCAAAATGC 57.515 33.333 0.00 0.00 0.00 3.56
3236 3436 8.147058 ACACATAATCTAAACAACATGCCAAAA 58.853 29.630 0.00 0.00 0.00 2.44
3242 3452 8.948853 ACGAAACACATAATCTAAACAACATG 57.051 30.769 0.00 0.00 0.00 3.21
3245 3455 9.525007 CAGTACGAAACACATAATCTAAACAAC 57.475 33.333 0.00 0.00 0.00 3.32
3261 3604 1.202203 TGCGTCACACAGTACGAAAC 58.798 50.000 0.00 0.00 41.55 2.78
3262 3605 1.923899 TTGCGTCACACAGTACGAAA 58.076 45.000 0.00 0.00 41.55 3.46
3269 3612 3.301352 GCATCATTGCGTCACACAG 57.699 52.632 0.00 0.00 39.49 3.66
3313 3656 7.860872 GGTGGAAAACAACAGTTGAGTTATTAG 59.139 37.037 20.56 0.00 36.56 1.73
3316 3660 5.891551 AGGTGGAAAACAACAGTTGAGTTAT 59.108 36.000 20.56 1.31 40.07 1.89
3322 3666 4.186856 ACAAGGTGGAAAACAACAGTTG 57.813 40.909 12.03 12.03 40.07 3.16
3416 3760 3.056107 TGGTCTCATTAACCTTGGACTCG 60.056 47.826 0.00 0.00 37.69 4.18
3459 3803 2.803956 CCATGCAAAGCACCTTTTTCAG 59.196 45.455 0.00 0.00 43.04 3.02
3591 3935 5.840243 TGAAAATATTCAGAGGGCACATG 57.160 39.130 0.00 0.00 40.59 3.21
3615 3973 8.483307 AACAATCAATCAATAGCCAAATGTTC 57.517 30.769 0.00 0.00 0.00 3.18
3656 4015 6.898041 TGCAACAATACAGAACAATCAGTAC 58.102 36.000 0.00 0.00 31.34 2.73
3666 4025 4.350368 TCTCACCTGCAACAATACAGAA 57.650 40.909 0.00 0.00 35.90 3.02
3675 4035 1.242076 ACAAGCATCTCACCTGCAAC 58.758 50.000 0.00 0.00 42.15 4.17
3841 4204 5.063944 CCAGACAATAGAACAAACCATCTCG 59.936 44.000 0.00 0.00 0.00 4.04
3943 4308 1.895131 ACCAATGGACCAATGCTGAAC 59.105 47.619 6.16 0.00 0.00 3.18
3999 4364 1.019278 CACCGAGATTCCACCAACGG 61.019 60.000 0.00 0.00 44.77 4.44
4000 4365 0.320421 ACACCGAGATTCCACCAACG 60.320 55.000 0.00 0.00 0.00 4.10
4003 4368 1.760613 GGATACACCGAGATTCCACCA 59.239 52.381 0.00 0.00 0.00 4.17
4040 4408 1.452833 GACTGGGATGCTCCAAGGC 60.453 63.158 10.32 4.54 42.12 4.35
4059 4427 1.264288 CCGTGCAGACTCCAAAGAAAC 59.736 52.381 0.00 0.00 0.00 2.78
4097 4465 4.594920 AGAGAAATGGGTGAGAAGTGAGAA 59.405 41.667 0.00 0.00 0.00 2.87
4100 4468 3.008375 CCAGAGAAATGGGTGAGAAGTGA 59.992 47.826 0.00 0.00 36.64 3.41
4107 4514 5.684704 GATACAATCCAGAGAAATGGGTGA 58.315 41.667 4.91 0.00 41.01 4.02
4114 4521 2.167693 ACGGCGATACAATCCAGAGAAA 59.832 45.455 16.62 0.00 0.00 2.52
4124 4531 0.678366 ATGGGCAAACGGCGATACAA 60.678 50.000 16.62 0.00 46.16 2.41
4125 4532 1.078072 ATGGGCAAACGGCGATACA 60.078 52.632 16.62 3.82 46.16 2.29
4141 4548 4.543590 ACAGTAACTTCAGTCCCAGATG 57.456 45.455 0.00 0.00 0.00 2.90
4142 4549 4.593206 TGAACAGTAACTTCAGTCCCAGAT 59.407 41.667 0.00 0.00 0.00 2.90
4143 4550 3.964688 TGAACAGTAACTTCAGTCCCAGA 59.035 43.478 0.00 0.00 0.00 3.86
4144 4551 4.336889 TGAACAGTAACTTCAGTCCCAG 57.663 45.455 0.00 0.00 0.00 4.45
4145 4552 4.444306 CCTTGAACAGTAACTTCAGTCCCA 60.444 45.833 0.00 0.00 0.00 4.37
4147 4554 4.511826 CACCTTGAACAGTAACTTCAGTCC 59.488 45.833 0.00 0.00 0.00 3.85
4148 4555 4.511826 CCACCTTGAACAGTAACTTCAGTC 59.488 45.833 0.00 0.00 0.00 3.51
4149 4556 4.451900 CCACCTTGAACAGTAACTTCAGT 58.548 43.478 0.00 0.00 0.00 3.41
4154 4561 3.508845 ATGCCACCTTGAACAGTAACT 57.491 42.857 0.00 0.00 0.00 2.24
4155 4562 4.584327 AAATGCCACCTTGAACAGTAAC 57.416 40.909 0.00 0.00 0.00 2.50
4156 4563 5.381757 AGTAAATGCCACCTTGAACAGTAA 58.618 37.500 0.00 0.00 0.00 2.24
4159 4566 5.957842 TTAGTAAATGCCACCTTGAACAG 57.042 39.130 0.00 0.00 0.00 3.16
4160 4567 6.909550 AATTAGTAAATGCCACCTTGAACA 57.090 33.333 0.00 0.00 0.00 3.18
4161 4568 9.869757 ATAAAATTAGTAAATGCCACCTTGAAC 57.130 29.630 0.00 0.00 0.00 3.18
4179 4586 9.847706 TGCGCTTGAAACTGAAATATAAAATTA 57.152 25.926 9.73 0.00 0.00 1.40
4193 4632 3.003480 GGAGTTATCTGCGCTTGAAACT 58.997 45.455 9.73 13.32 0.00 2.66
4205 4644 2.154567 TAGTGGCCACGGAGTTATCT 57.845 50.000 29.68 11.86 41.61 1.98
4222 4661 6.583427 GGTTTTTATAGCCGTTTTGTGGTTAG 59.417 38.462 0.00 0.00 0.00 2.34
4228 4667 5.517322 TGTGGTTTTTATAGCCGTTTTGT 57.483 34.783 0.00 0.00 0.00 2.83
4230 4669 4.552355 GCTGTGGTTTTTATAGCCGTTTT 58.448 39.130 0.00 0.00 0.00 2.43
4247 4686 0.321564 TTTGAGTCGGGATGGCTGTG 60.322 55.000 0.00 0.00 0.00 3.66
4329 4788 4.161295 CAGGAGGATGGCGGCGAA 62.161 66.667 12.98 0.00 0.00 4.70
4360 4819 1.736645 CTGCCAGCATTGCACTTGC 60.737 57.895 11.91 11.92 40.45 4.01
4418 4877 1.811266 CGCGCATGTCTTAGCCAGT 60.811 57.895 8.75 0.00 0.00 4.00
4700 5159 2.436292 AGGGGACGAGACGACGAG 60.436 66.667 0.00 0.00 37.03 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.