Multiple sequence alignment - TraesCS3D01G365200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G365200 chr3D 100.000 9147 0 0 1 9147 479621256 479612110 0.000000e+00 16892.0
1 TraesCS3D01G365200 chr3D 94.590 536 21 1 3978 4505 161914323 161914858 0.000000e+00 822.0
2 TraesCS3D01G365200 chr3A 92.724 4233 164 69 4496 8628 623051001 623046813 0.000000e+00 5978.0
3 TraesCS3D01G365200 chr3A 89.321 3652 153 92 168 3704 623054794 623051265 0.000000e+00 4364.0
4 TraesCS3D01G365200 chr3A 88.119 505 35 12 8644 9145 623040209 623039727 2.210000e-160 577.0
5 TraesCS3D01G365200 chr3A 86.923 260 10 9 3730 3977 623051269 623051022 4.210000e-68 270.0
6 TraesCS3D01G365200 chr3B 89.756 4090 163 110 1 3977 640069228 640065282 0.000000e+00 4996.0
7 TraesCS3D01G365200 chr3B 92.048 1924 53 37 4496 6349 640065261 640063368 0.000000e+00 2614.0
8 TraesCS3D01G365200 chr3B 89.403 1859 112 39 7328 9145 640061895 640060081 0.000000e+00 2263.0
9 TraesCS3D01G365200 chr3B 92.949 851 39 11 6370 7216 640063376 640062543 0.000000e+00 1219.0
10 TraesCS3D01G365200 chr5D 94.981 538 17 5 3978 4507 421912365 421912900 0.000000e+00 835.0
11 TraesCS3D01G365200 chr5D 94.413 537 22 1 3978 4506 342525705 342526241 0.000000e+00 819.0
12 TraesCS3D01G365200 chr5D 93.923 543 23 4 3979 4513 397029826 397030366 0.000000e+00 811.0
13 TraesCS3D01G365200 chrUn 94.963 536 18 2 3978 4505 115109789 115110323 0.000000e+00 832.0
14 TraesCS3D01G365200 chr2D 94.776 536 20 1 3978 4505 102277906 102277371 0.000000e+00 828.0
15 TraesCS3D01G365200 chr2D 89.076 238 20 4 3980 4215 326787768 326787535 3.230000e-74 291.0
16 TraesCS3D01G365200 chr1D 94.776 536 20 1 3978 4505 250741366 250740831 0.000000e+00 828.0
17 TraesCS3D01G365200 chr1D 91.057 246 10 6 3978 4215 309084269 309084028 1.150000e-83 322.0
18 TraesCS3D01G365200 chr1D 95.349 43 2 0 3978 4020 432697617 432697575 1.650000e-07 69.4
19 TraesCS3D01G365200 chr7D 94.776 536 19 2 3980 4507 549746148 549745614 0.000000e+00 826.0
20 TraesCS3D01G365200 chr7D 94.231 520 27 2 3988 4507 503329651 503329135 0.000000e+00 791.0
21 TraesCS3D01G365200 chr4D 95.238 525 17 4 3978 4494 501080090 501080614 0.000000e+00 824.0
22 TraesCS3D01G365200 chr4D 95.349 43 2 0 3978 4020 11870909 11870951 1.650000e-07 69.4
23 TraesCS3D01G365200 chr4D 97.222 36 1 0 1796 1831 115939213 115939178 2.760000e-05 62.1
24 TraesCS3D01G365200 chr6A 91.978 536 35 3 3978 4505 326399366 326398831 0.000000e+00 745.0
25 TraesCS3D01G365200 chr6A 94.286 35 1 1 1015 1049 252404311 252404278 1.700000e-02 52.8
26 TraesCS3D01G365200 chr1B 83.582 536 68 14 3982 4504 429199823 429199295 1.380000e-132 484.0
27 TraesCS3D01G365200 chr1A 87.097 62 8 0 2402 2463 471696597 471696658 4.580000e-08 71.3
28 TraesCS3D01G365200 chr6D 95.349 43 2 0 3978 4020 96045456 96045414 1.650000e-07 69.4
29 TraesCS3D01G365200 chr4B 93.333 45 2 1 1784 1828 176260833 176260876 2.130000e-06 65.8
30 TraesCS3D01G365200 chr4B 94.872 39 2 0 3461 3499 663462176 663462138 2.760000e-05 62.1
31 TraesCS3D01G365200 chr4A 93.333 45 2 1 1784 1828 460897896 460897939 2.130000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G365200 chr3D 479612110 479621256 9146 True 16892.000000 16892 100.000 1 9147 1 chr3D.!!$R1 9146
1 TraesCS3D01G365200 chr3D 161914323 161914858 535 False 822.000000 822 94.590 3978 4505 1 chr3D.!!$F1 527
2 TraesCS3D01G365200 chr3A 623046813 623054794 7981 True 3537.333333 5978 89.656 168 8628 3 chr3A.!!$R2 8460
3 TraesCS3D01G365200 chr3B 640060081 640069228 9147 True 2773.000000 4996 91.039 1 9145 4 chr3B.!!$R1 9144
4 TraesCS3D01G365200 chr5D 421912365 421912900 535 False 835.000000 835 94.981 3978 4507 1 chr5D.!!$F3 529
5 TraesCS3D01G365200 chr5D 342525705 342526241 536 False 819.000000 819 94.413 3978 4506 1 chr5D.!!$F1 528
6 TraesCS3D01G365200 chr5D 397029826 397030366 540 False 811.000000 811 93.923 3979 4513 1 chr5D.!!$F2 534
7 TraesCS3D01G365200 chrUn 115109789 115110323 534 False 832.000000 832 94.963 3978 4505 1 chrUn.!!$F1 527
8 TraesCS3D01G365200 chr2D 102277371 102277906 535 True 828.000000 828 94.776 3978 4505 1 chr2D.!!$R1 527
9 TraesCS3D01G365200 chr1D 250740831 250741366 535 True 828.000000 828 94.776 3978 4505 1 chr1D.!!$R1 527
10 TraesCS3D01G365200 chr7D 549745614 549746148 534 True 826.000000 826 94.776 3980 4507 1 chr7D.!!$R2 527
11 TraesCS3D01G365200 chr7D 503329135 503329651 516 True 791.000000 791 94.231 3988 4507 1 chr7D.!!$R1 519
12 TraesCS3D01G365200 chr4D 501080090 501080614 524 False 824.000000 824 95.238 3978 4494 1 chr4D.!!$F2 516
13 TraesCS3D01G365200 chr6A 326398831 326399366 535 True 745.000000 745 91.978 3978 4505 1 chr6A.!!$R2 527
14 TraesCS3D01G365200 chr1B 429199295 429199823 528 True 484.000000 484 83.582 3982 4504 1 chr1B.!!$R1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 113 0.034186 ACATTGGATCGGTGGTGCAT 60.034 50.0 0.00 0.00 0.00 3.96 F
945 1031 0.036022 AACTTCACTCTGGCCTCTGC 59.964 55.0 3.32 0.00 0.00 4.26 F
2078 2240 0.386352 CAAACAGTCGCCACATGCAG 60.386 55.0 0.00 0.00 41.33 4.41 F
3553 3793 0.179006 GCCCTTTGCATAGGCTAGCT 60.179 55.0 17.08 3.22 43.62 3.32 F
3704 3944 0.031994 GGACACCAACAACACCATGC 59.968 55.0 0.00 0.00 0.00 4.06 F
5111 5406 0.179140 CAGCTCGTCTTCTCTCTGCC 60.179 60.0 0.00 0.00 0.00 4.85 F
5783 6093 0.601558 GCTTGCTATCATGCATGGGG 59.398 55.0 25.97 16.34 42.96 4.96 F
6058 6368 0.036952 CACCGCACATCACTCCTCTT 60.037 55.0 0.00 0.00 0.00 2.85 F
6061 6371 0.247460 CGCACATCACTCCTCTTGGA 59.753 55.0 0.00 0.00 40.69 3.53 F
7733 8636 0.328258 CCCGGTGTTTCCTCTCCATT 59.672 55.0 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1383 1484 1.328680 GCATGCACACGATCGAGATTT 59.671 47.619 24.34 0.00 0.00 2.17 R
2285 2486 0.184933 TTGGTGTTCCTGTTCCCCTG 59.815 55.000 0.00 0.00 34.23 4.45 R
3572 3812 0.033699 AGCATGGCCTTTTCTCCTCC 60.034 55.000 3.32 0.00 0.00 4.30 R
4804 5077 0.608856 AACCACGCAAGATGATGGCA 60.609 50.000 0.00 0.00 43.62 4.92 R
5159 5458 0.998928 TATCCCCTGGAGCAAGCAAA 59.001 50.000 0.00 0.00 34.05 3.68 R
6041 6351 0.742281 CCAAGAGGAGTGATGTGCGG 60.742 60.000 0.00 0.00 36.89 5.69 R
7285 7676 0.034756 TAGCCAGCTTTTCGTGAGCA 59.965 50.000 0.00 0.00 42.56 4.26 R
7544 8447 0.107897 ACGACATAGAATGCCGGCAA 60.108 50.000 36.33 18.56 40.58 4.52 R
7803 8706 0.308993 AGTTTTTGCAGCTGAGCGAC 59.691 50.000 20.43 8.64 37.31 5.19 R
8981 9918 0.549469 TGCCATGATGGAGCTGATGT 59.451 50.000 17.22 0.00 40.96 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 25 3.142174 GAGAAGACAAGTCCCAAACCAG 58.858 50.000 0.00 0.00 0.00 4.00
83 90 3.000082 CGCAAGTGGTTTCTTTCTTCC 58.000 47.619 0.00 0.00 0.00 3.46
85 92 2.693074 GCAAGTGGTTTCTTTCTTCCCA 59.307 45.455 0.00 0.00 0.00 4.37
88 95 4.184649 AGTGGTTTCTTTCTTCCCACAT 57.815 40.909 9.54 0.00 46.34 3.21
104 113 0.034186 ACATTGGATCGGTGGTGCAT 60.034 50.000 0.00 0.00 0.00 3.96
136 145 7.517320 TGATATGTTTATATCTGGTGGTGCTT 58.483 34.615 8.31 0.00 43.62 3.91
143 152 2.969821 TCTGGTGGTGCTTTGGTTAT 57.030 45.000 0.00 0.00 0.00 1.89
154 163 2.513753 CTTTGGTTATGAGTGGCCACA 58.486 47.619 36.39 18.81 0.00 4.17
164 173 2.994990 GTGGCCACACGAGTAAACA 58.005 52.632 31.23 0.00 37.94 2.83
189 198 2.418368 TGTTGGTGATATGTGGAGGC 57.582 50.000 0.00 0.00 0.00 4.70
209 218 3.624861 GGCAGAGAACATATGGTTGACAG 59.375 47.826 7.80 0.00 40.63 3.51
221 230 0.107459 GTTGACAGATCAGCCCCTCC 60.107 60.000 0.00 0.00 35.83 4.30
222 231 0.252881 TTGACAGATCAGCCCCTCCT 60.253 55.000 0.00 0.00 35.83 3.69
223 232 0.636647 TGACAGATCAGCCCCTCCTA 59.363 55.000 0.00 0.00 0.00 2.94
224 233 1.221523 TGACAGATCAGCCCCTCCTAT 59.778 52.381 0.00 0.00 0.00 2.57
225 234 1.622811 GACAGATCAGCCCCTCCTATG 59.377 57.143 0.00 0.00 0.00 2.23
246 282 4.148079 TGTCTCTCTCTCTCTGCTTTCAA 58.852 43.478 0.00 0.00 0.00 2.69
254 290 5.525378 TCTCTCTCTGCTTTCAAGTTTCAAC 59.475 40.000 0.00 0.00 0.00 3.18
269 305 3.830744 TTCAACAGAAGAGACGGGAAA 57.169 42.857 0.00 0.00 0.00 3.13
275 311 3.085533 CAGAAGAGACGGGAAAGAGAGA 58.914 50.000 0.00 0.00 0.00 3.10
304 340 4.202430 GGAGGGGTAGAACAACTTCTCAAA 60.202 45.833 0.00 0.00 37.87 2.69
454 491 1.527380 GGGACGAAAGGTGGTTGCA 60.527 57.895 0.00 0.00 0.00 4.08
463 500 1.903404 GGTGGTTGCAAGGAGTGGG 60.903 63.158 0.00 0.00 0.00 4.61
512 549 1.147376 GGCCTACCACACACACACA 59.853 57.895 0.00 0.00 35.26 3.72
513 550 1.164041 GGCCTACCACACACACACAC 61.164 60.000 0.00 0.00 35.26 3.82
514 551 0.462937 GCCTACCACACACACACACA 60.463 55.000 0.00 0.00 0.00 3.72
515 552 1.295792 CCTACCACACACACACACAC 58.704 55.000 0.00 0.00 0.00 3.82
516 553 1.295792 CTACCACACACACACACACC 58.704 55.000 0.00 0.00 0.00 4.16
517 554 0.906066 TACCACACACACACACACCT 59.094 50.000 0.00 0.00 0.00 4.00
518 555 0.392461 ACCACACACACACACACCTC 60.392 55.000 0.00 0.00 0.00 3.85
522 571 1.692749 ACACACACACACCTCCCCT 60.693 57.895 0.00 0.00 0.00 4.79
531 580 1.566703 CACACCTCCCCTCTCTCTCTA 59.433 57.143 0.00 0.00 0.00 2.43
547 596 4.659368 TCTCTCTATCTAACCCTCTTCGGA 59.341 45.833 0.00 0.00 33.16 4.55
585 656 2.741517 CTCACACACACAGACACACAAA 59.258 45.455 0.00 0.00 0.00 2.83
647 718 4.884164 AGTGTGAGGAAAAAGAAAGACAGG 59.116 41.667 0.00 0.00 0.00 4.00
867 951 6.156949 AGGATGGTATGTACACATGTTCTCTT 59.843 38.462 0.00 0.00 37.15 2.85
890 974 0.106217 CCCTCTCTCTCTGGTCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
891 975 0.926293 CCTCTCTCTCTGGTCCTCCT 59.074 60.000 0.00 0.00 34.23 3.69
892 976 1.133792 CCTCTCTCTCTGGTCCTCCTC 60.134 61.905 0.00 0.00 34.23 3.71
893 977 0.923358 TCTCTCTCTGGTCCTCCTCC 59.077 60.000 0.00 0.00 34.23 4.30
894 978 0.628522 CTCTCTCTGGTCCTCCTCCA 59.371 60.000 0.00 0.00 34.23 3.86
899 983 4.741239 TGGTCCTCCTCCAGCCCC 62.741 72.222 0.00 0.00 34.23 5.80
900 984 4.423209 GGTCCTCCTCCAGCCCCT 62.423 72.222 0.00 0.00 0.00 4.79
904 988 2.716203 CCTCCTCCAGCCCCTCCTA 61.716 68.421 0.00 0.00 0.00 2.94
905 989 1.458588 CTCCTCCAGCCCCTCCTAC 60.459 68.421 0.00 0.00 0.00 3.18
907 991 2.446802 CTCCAGCCCCTCCTACCC 60.447 72.222 0.00 0.00 0.00 3.69
910 994 4.798682 CAGCCCCTCCTACCCCGT 62.799 72.222 0.00 0.00 0.00 5.28
917 1003 0.179012 CCTCCTACCCCGTCTCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
922 1008 1.212934 TACCCCGTCTCTCTCCCACT 61.213 60.000 0.00 0.00 0.00 4.00
945 1031 0.036022 AACTTCACTCTGGCCTCTGC 59.964 55.000 3.32 0.00 0.00 4.26
1071 1157 4.436998 GACCACCACGAGAGGGCG 62.437 72.222 0.00 0.00 37.29 6.13
1144 1230 3.256960 AACCCCATCACCACGCCT 61.257 61.111 0.00 0.00 0.00 5.52
1423 1524 4.410099 TGCTTTTATCCATCCATCCATCC 58.590 43.478 0.00 0.00 0.00 3.51
1424 1525 4.140971 TGCTTTTATCCATCCATCCATCCA 60.141 41.667 0.00 0.00 0.00 3.41
1426 1527 5.126707 GCTTTTATCCATCCATCCATCCATC 59.873 44.000 0.00 0.00 0.00 3.51
1428 1529 6.473429 TTTATCCATCCATCCATCCATCTT 57.527 37.500 0.00 0.00 0.00 2.40
1429 1530 6.473429 TTATCCATCCATCCATCCATCTTT 57.527 37.500 0.00 0.00 0.00 2.52
1430 1531 4.819702 TCCATCCATCCATCCATCTTTT 57.180 40.909 0.00 0.00 0.00 2.27
1431 1532 5.146868 TCCATCCATCCATCCATCTTTTT 57.853 39.130 0.00 0.00 0.00 1.94
1435 1536 6.324512 CCATCCATCCATCCATCTTTTTAACA 59.675 38.462 0.00 0.00 0.00 2.41
1436 1537 7.431249 CATCCATCCATCCATCTTTTTAACAG 58.569 38.462 0.00 0.00 0.00 3.16
1493 1594 2.838736 CTCCATTGGATTACACCTCCG 58.161 52.381 5.70 0.00 35.41 4.63
1495 1596 0.937304 CATTGGATTACACCTCCGCG 59.063 55.000 0.00 0.00 35.41 6.46
1496 1597 0.814010 ATTGGATTACACCTCCGCGC 60.814 55.000 0.00 0.00 35.41 6.86
1497 1598 2.960129 GGATTACACCTCCGCGCG 60.960 66.667 25.67 25.67 0.00 6.86
1879 2014 4.329545 CACCACCTCCACCACCCG 62.330 72.222 0.00 0.00 0.00 5.28
1962 2100 4.473444 TCTTCTTCTTCCATGCACCTTTT 58.527 39.130 0.00 0.00 0.00 2.27
2077 2239 1.100463 ACAAACAGTCGCCACATGCA 61.100 50.000 0.00 0.00 41.33 3.96
2078 2240 0.386352 CAAACAGTCGCCACATGCAG 60.386 55.000 0.00 0.00 41.33 4.41
2079 2241 2.133742 AAACAGTCGCCACATGCAGC 62.134 55.000 0.00 0.00 41.33 5.25
2080 2242 2.745100 CAGTCGCCACATGCAGCT 60.745 61.111 6.06 0.00 41.33 4.24
2119 2287 2.887151 AATGGTGAGACAAGGAAGGG 57.113 50.000 0.00 0.00 0.00 3.95
2121 2289 1.814429 TGGTGAGACAAGGAAGGGAA 58.186 50.000 0.00 0.00 0.00 3.97
2141 2309 2.100631 CATGTCGTCGTCCTTGGGC 61.101 63.158 0.00 0.00 0.00 5.36
2246 2434 2.982488 AGCCTTTTCTCTTTCTCTGGGA 59.018 45.455 0.00 0.00 0.00 4.37
2285 2486 1.227999 TGCACGAACAGCTGTTAGCC 61.228 55.000 31.77 24.32 43.77 3.93
2383 2593 4.095400 GCAGGAGGAGGAGGGGGA 62.095 72.222 0.00 0.00 0.00 4.81
2384 2594 2.285180 CAGGAGGAGGAGGGGGAG 59.715 72.222 0.00 0.00 0.00 4.30
2385 2595 3.039526 AGGAGGAGGAGGGGGAGG 61.040 72.222 0.00 0.00 0.00 4.30
2511 2721 1.766494 TGATCATTCACCCCATGCAC 58.234 50.000 0.00 0.00 0.00 4.57
2512 2722 0.664761 GATCATTCACCCCATGCACG 59.335 55.000 0.00 0.00 0.00 5.34
2513 2723 1.386525 ATCATTCACCCCATGCACGC 61.387 55.000 0.00 0.00 0.00 5.34
2517 2727 0.322906 TTCACCCCATGCACGCATTA 60.323 50.000 0.72 0.00 33.90 1.90
2519 2729 0.746063 CACCCCATGCACGCATTAAT 59.254 50.000 0.72 0.00 33.90 1.40
2521 2731 1.408702 ACCCCATGCACGCATTAATTC 59.591 47.619 0.72 0.00 33.90 2.17
2522 2732 1.408340 CCCCATGCACGCATTAATTCA 59.592 47.619 0.72 0.00 33.90 2.57
2528 2738 1.798813 GCACGCATTAATTCACTGGCC 60.799 52.381 0.00 0.00 0.00 5.36
2568 2778 1.745489 CCGAGGAAAAAGAGGCCGG 60.745 63.158 0.00 0.00 0.00 6.13
2725 2944 4.741781 GCATGCGTGCGTGACCAC 62.742 66.667 16.43 0.00 42.28 4.16
2726 2945 3.043713 CATGCGTGCGTGACCACT 61.044 61.111 8.34 0.00 35.09 4.00
2728 2947 3.226429 ATGCGTGCGTGACCACTCT 62.226 57.895 0.00 0.00 33.60 3.24
2729 2948 3.106407 GCGTGCGTGACCACTCTC 61.106 66.667 0.00 0.00 33.60 3.20
2730 2949 2.430921 CGTGCGTGACCACTCTCC 60.431 66.667 0.00 0.00 33.60 3.71
2753 2972 2.031245 TCACTGTTTGCCTGCGTTAATG 60.031 45.455 0.00 0.00 0.00 1.90
2896 3115 4.007644 CACCACCTCCGAGCAGCA 62.008 66.667 0.00 0.00 0.00 4.41
2900 3119 4.079850 ACCTCCGAGCAGCAGCAG 62.080 66.667 3.17 0.00 45.49 4.24
2953 3172 4.162131 TGATGATTACAGCTACAAGCCAGA 59.838 41.667 0.00 0.00 43.77 3.86
3017 3236 3.259425 CTTTCAGCAGCCGCACCAC 62.259 63.158 0.00 0.00 42.27 4.16
3158 3389 0.449388 GTCGTACCAGTACCAGACCG 59.551 60.000 2.46 0.00 32.61 4.79
3229 3460 4.008933 GCCTCGCCACTCACCAGT 62.009 66.667 0.00 0.00 0.00 4.00
3374 3610 4.065281 CTGTCCCGTCACCGTCCC 62.065 72.222 0.00 0.00 0.00 4.46
3404 3640 3.297620 ACGGCCGAGTGGTACGTT 61.298 61.111 35.90 0.68 44.62 3.99
3439 3675 2.910479 TCAGTCACGGACAGGCGT 60.910 61.111 6.78 0.00 34.60 5.68
3440 3676 2.734723 CAGTCACGGACAGGCGTG 60.735 66.667 4.53 4.53 34.60 5.34
3552 3792 2.335323 GCCCTTTGCATAGGCTAGC 58.665 57.895 17.08 6.04 43.62 3.42
3553 3793 0.179006 GCCCTTTGCATAGGCTAGCT 60.179 55.000 17.08 3.22 43.62 3.32
3554 3794 1.072331 GCCCTTTGCATAGGCTAGCTA 59.928 52.381 17.08 5.54 43.62 3.32
3555 3795 2.873649 GCCCTTTGCATAGGCTAGCTAG 60.874 54.545 16.84 16.84 43.62 3.42
3556 3796 2.634940 CCCTTTGCATAGGCTAGCTAGA 59.365 50.000 25.15 3.82 41.91 2.43
3557 3797 3.306641 CCCTTTGCATAGGCTAGCTAGAG 60.307 52.174 25.15 8.93 41.91 2.43
3558 3798 3.324993 CTTTGCATAGGCTAGCTAGAGC 58.675 50.000 25.15 12.71 41.91 4.09
3569 3809 5.499139 GCTAGCTAGAGCCTCTATGTATG 57.501 47.826 25.15 0.00 43.38 2.39
3570 3810 5.189928 GCTAGCTAGAGCCTCTATGTATGA 58.810 45.833 25.15 0.00 43.38 2.15
3571 3811 5.827797 GCTAGCTAGAGCCTCTATGTATGAT 59.172 44.000 25.15 0.00 43.38 2.45
3572 3812 6.238731 GCTAGCTAGAGCCTCTATGTATGATG 60.239 46.154 25.15 0.00 43.38 3.07
3699 3939 3.314357 GGTTAAGAGGACACCAACAACAC 59.686 47.826 0.00 0.00 0.00 3.32
3703 3943 1.608590 GAGGACACCAACAACACCATG 59.391 52.381 0.00 0.00 0.00 3.66
3704 3944 0.031994 GGACACCAACAACACCATGC 59.968 55.000 0.00 0.00 0.00 4.06
3705 3945 0.743688 GACACCAACAACACCATGCA 59.256 50.000 0.00 0.00 0.00 3.96
3723 3967 3.148412 TGCATAATGATGGATGGAACGG 58.852 45.455 0.00 0.00 33.26 4.44
3725 3969 3.754965 CATAATGATGGATGGAACGGGT 58.245 45.455 0.00 0.00 0.00 5.28
3771 4015 1.580658 TCCCAGGGTGGATAGACAGAT 59.419 52.381 5.01 0.00 40.96 2.90
3866 4120 1.406898 TGATGGTCACTCATCGAGCTC 59.593 52.381 2.73 2.73 44.68 4.09
3867 4121 0.383590 ATGGTCACTCATCGAGCTCG 59.616 55.000 30.03 30.03 41.45 5.03
3895 4149 0.464916 CTGTGATGGCCAGCAGCATA 60.465 55.000 27.07 10.41 46.50 3.14
3907 4163 2.598045 CAGCATAGTAGCGTGGCTG 58.402 57.895 0.00 0.00 44.91 4.85
3953 4209 0.541063 TCAGGGACGGACAGCTACAA 60.541 55.000 0.00 0.00 0.00 2.41
4054 4318 2.659244 GTGACGCCCGACACGAAA 60.659 61.111 7.43 0.00 32.16 3.46
4112 4377 1.412710 GCTACATGCCTGGCTAGTGTA 59.587 52.381 21.03 21.49 35.15 2.90
4126 4392 0.685097 AGTGTAGCACCCGTGTGATT 59.315 50.000 0.90 0.00 45.76 2.57
4478 4744 9.778993 CAGTTCATTCTATGATTTGATTTCGTT 57.221 29.630 0.00 0.00 39.39 3.85
4629 4901 4.485024 AGGAACGATGCTACTATACACG 57.515 45.455 0.00 0.00 0.00 4.49
4654 4926 3.428532 TGCTCTAACTCCGTACCTCTTT 58.571 45.455 0.00 0.00 0.00 2.52
4793 5066 3.855255 TGGTTCATGTCTCTTGGAACA 57.145 42.857 0.00 0.00 40.97 3.18
4818 5091 1.002792 CATCTGTGCCATCATCTTGCG 60.003 52.381 0.00 0.00 0.00 4.85
4850 5129 2.577449 CCGTTTTGGTTTTGCAGACT 57.423 45.000 2.84 0.00 0.00 3.24
4926 5205 4.225942 AGAAGGTGCTCACAAGATCCATAA 59.774 41.667 2.21 0.00 0.00 1.90
4941 5236 9.956720 CAAGATCCATAAAACATACCTTTGATC 57.043 33.333 0.00 0.00 0.00 2.92
4943 5238 9.125026 AGATCCATAAAACATACCTTTGATCAC 57.875 33.333 0.00 0.00 0.00 3.06
5110 5405 0.525761 ACAGCTCGTCTTCTCTCTGC 59.474 55.000 0.00 0.00 0.00 4.26
5111 5406 0.179140 CAGCTCGTCTTCTCTCTGCC 60.179 60.000 0.00 0.00 0.00 4.85
5130 5429 2.181975 CCCAGTCCATTTGATGCCTTT 58.818 47.619 0.00 0.00 0.00 3.11
5139 5438 6.366061 GTCCATTTGATGCCTTTGAAAAGTAC 59.634 38.462 2.33 0.00 34.20 2.73
5153 5452 8.519799 TTTGAAAAGTACTTTCCTCTCACAAT 57.480 30.769 20.78 1.53 42.51 2.71
5159 5458 6.951971 AGTACTTTCCTCTCACAATATTGCT 58.048 36.000 15.48 0.27 0.00 3.91
5167 5466 4.487948 TCTCACAATATTGCTTTGCTTGC 58.512 39.130 15.48 0.00 0.00 4.01
5639 5949 6.458888 GCTCCTCAAGGTCAAGCATATTTTAC 60.459 42.308 3.93 0.00 33.99 2.01
5770 6080 2.124942 GCTAGAAGCCGGCTTGCT 60.125 61.111 44.71 36.06 45.43 3.91
5783 6093 0.601558 GCTTGCTATCATGCATGGGG 59.398 55.000 25.97 16.34 42.96 4.96
6041 6351 1.670406 CCAGCAGGTCAGCACTCAC 60.670 63.158 0.00 0.00 36.85 3.51
6043 6353 2.740055 GCAGGTCAGCACTCACCG 60.740 66.667 0.00 0.00 37.79 4.94
6045 6355 3.233980 AGGTCAGCACTCACCGCA 61.234 61.111 0.00 0.00 37.79 5.69
6046 6356 3.044305 GGTCAGCACTCACCGCAC 61.044 66.667 0.00 0.00 0.00 5.34
6047 6357 2.280119 GTCAGCACTCACCGCACA 60.280 61.111 0.00 0.00 0.00 4.57
6048 6358 1.669115 GTCAGCACTCACCGCACAT 60.669 57.895 0.00 0.00 0.00 3.21
6049 6359 1.374631 TCAGCACTCACCGCACATC 60.375 57.895 0.00 0.00 0.00 3.06
6050 6360 1.668793 CAGCACTCACCGCACATCA 60.669 57.895 0.00 0.00 0.00 3.07
6051 6361 1.669115 AGCACTCACCGCACATCAC 60.669 57.895 0.00 0.00 0.00 3.06
6052 6362 1.669115 GCACTCACCGCACATCACT 60.669 57.895 0.00 0.00 0.00 3.41
6053 6363 1.630244 GCACTCACCGCACATCACTC 61.630 60.000 0.00 0.00 0.00 3.51
6054 6364 1.016130 CACTCACCGCACATCACTCC 61.016 60.000 0.00 0.00 0.00 3.85
6055 6365 1.188219 ACTCACCGCACATCACTCCT 61.188 55.000 0.00 0.00 0.00 3.69
6058 6368 0.036952 CACCGCACATCACTCCTCTT 60.037 55.000 0.00 0.00 0.00 2.85
6059 6369 0.036952 ACCGCACATCACTCCTCTTG 60.037 55.000 0.00 0.00 0.00 3.02
6060 6370 0.742281 CCGCACATCACTCCTCTTGG 60.742 60.000 0.00 0.00 0.00 3.61
6061 6371 0.247460 CGCACATCACTCCTCTTGGA 59.753 55.000 0.00 0.00 40.69 3.53
6062 6372 1.731720 GCACATCACTCCTCTTGGAC 58.268 55.000 0.00 0.00 37.46 4.02
6064 6374 2.934364 GCACATCACTCCTCTTGGACTG 60.934 54.545 0.00 0.00 37.46 3.51
6065 6375 1.277557 ACATCACTCCTCTTGGACTGC 59.722 52.381 0.00 0.00 37.46 4.40
6066 6376 1.277273 CATCACTCCTCTTGGACTGCA 59.723 52.381 0.00 0.00 37.46 4.41
6067 6377 1.649321 TCACTCCTCTTGGACTGCAT 58.351 50.000 0.00 0.00 37.46 3.96
6068 6378 1.552337 TCACTCCTCTTGGACTGCATC 59.448 52.381 0.00 0.00 37.46 3.91
6070 6380 2.093075 CACTCCTCTTGGACTGCATCAT 60.093 50.000 0.00 0.00 37.46 2.45
6075 6393 3.139850 CTCTTGGACTGCATCATCATCC 58.860 50.000 0.00 0.00 0.00 3.51
6077 6395 2.632987 TGGACTGCATCATCATCCTG 57.367 50.000 0.00 0.00 0.00 3.86
6089 6407 2.574006 TCATCCTGAAACTTGCTGCT 57.426 45.000 0.00 0.00 0.00 4.24
6095 6413 2.227388 CCTGAAACTTGCTGCTGTTAGG 59.773 50.000 10.79 10.82 0.00 2.69
6120 6465 6.369065 GTCATAACCTCTCTTGAATCAAACGT 59.631 38.462 0.00 0.00 0.00 3.99
6123 6468 8.717821 CATAACCTCTCTTGAATCAAACGTTAA 58.282 33.333 0.00 0.00 0.00 2.01
6194 6539 2.872245 TCCTTTTCTGTCAGAAACGCTG 59.128 45.455 24.48 15.26 43.25 5.18
6285 6630 4.821805 CCAGCGGATTAAACTTGTGGATAT 59.178 41.667 0.00 0.00 0.00 1.63
6322 6667 2.064762 CTAGCACGCATAATCAGCCTC 58.935 52.381 0.00 0.00 0.00 4.70
6356 6705 7.433537 AACCATACTACTACCAAGCTAATGT 57.566 36.000 0.00 0.00 0.00 2.71
6416 6765 3.434179 ACAAGTTGGTGGGGGCCA 61.434 61.111 4.39 0.00 36.62 5.36
6473 6822 2.357327 TGTGTACGTGTACCTGCATC 57.643 50.000 0.00 0.00 35.26 3.91
6475 6824 2.259618 GTGTACGTGTACCTGCATCTG 58.740 52.381 0.00 0.00 35.26 2.90
6606 6960 2.426738 CTCTCTACCCTCTCTTGTGCTG 59.573 54.545 0.00 0.00 0.00 4.41
6607 6961 2.175202 CTCTACCCTCTCTTGTGCTGT 58.825 52.381 0.00 0.00 0.00 4.40
6661 7022 6.238648 TCTTGTTTTATTCCCTCCTCTGTTC 58.761 40.000 0.00 0.00 0.00 3.18
6691 7052 1.529010 CACAGCTGAGGCCCACAAA 60.529 57.895 23.35 0.00 39.73 2.83
6749 7110 1.855295 ATGATGTTCCATGCCTTGCA 58.145 45.000 0.00 0.00 44.86 4.08
6786 7147 2.963101 TCCTACCCATGAATAGTGTCCG 59.037 50.000 0.00 0.00 0.00 4.79
6822 7183 0.550914 AGAAAAGGACACAGCCACCA 59.449 50.000 0.00 0.00 0.00 4.17
6824 7185 0.755327 AAAAGGACACAGCCACCACC 60.755 55.000 0.00 0.00 0.00 4.61
6906 7267 5.977129 CCATCACAAGTGTAGGAAAAACAAC 59.023 40.000 0.00 0.00 0.00 3.32
6947 7308 5.279456 GGATTATCTTCTCTCTCTCAAGGCC 60.279 48.000 0.00 0.00 0.00 5.19
6948 7309 1.859302 TCTTCTCTCTCTCAAGGCCC 58.141 55.000 0.00 0.00 0.00 5.80
6992 7353 5.659463 TGAGACCTCCATTTTGTTTTTGTG 58.341 37.500 0.00 0.00 0.00 3.33
7008 7370 6.874664 TGTTTTTGTGTTTTCCTACCTTTTCC 59.125 34.615 0.00 0.00 0.00 3.13
7009 7371 5.601583 TTTGTGTTTTCCTACCTTTTCCC 57.398 39.130 0.00 0.00 0.00 3.97
7285 7676 6.710744 ACATCAGACACTTCTTATTTTCGGTT 59.289 34.615 0.00 0.00 0.00 4.44
7445 8348 2.511218 AGGATAAGCCCTTGCAAGATCA 59.489 45.455 28.05 8.19 41.13 2.92
7452 8355 2.089980 CCCTTGCAAGATCAGAACCAG 58.910 52.381 28.05 6.54 0.00 4.00
7453 8356 2.553904 CCCTTGCAAGATCAGAACCAGT 60.554 50.000 28.05 0.00 0.00 4.00
7599 8502 4.549458 CCAAGCCAAGATACAAAACTGTG 58.451 43.478 0.00 0.00 0.00 3.66
7733 8636 0.328258 CCCGGTGTTTCCTCTCCATT 59.672 55.000 0.00 0.00 0.00 3.16
7803 8706 2.722071 GTCCTCGCGAGTAAGATTCAG 58.278 52.381 32.41 15.18 0.00 3.02
7841 8744 7.470289 AAAACTGCACTCTATATTCTTAGCG 57.530 36.000 0.00 0.00 0.00 4.26
7845 8748 7.713750 ACTGCACTCTATATTCTTAGCGTTTA 58.286 34.615 0.00 0.00 0.00 2.01
7849 8752 7.431249 CACTCTATATTCTTAGCGTTTACCCA 58.569 38.462 0.00 0.00 0.00 4.51
7860 8763 3.949113 AGCGTTTACCCAAGTTTCAGAAA 59.051 39.130 0.00 0.00 0.00 2.52
7863 8766 5.751509 GCGTTTACCCAAGTTTCAGAAAAAT 59.248 36.000 0.00 0.00 0.00 1.82
7935 8839 1.005037 GGACTCGACACATGTGCCA 60.005 57.895 25.68 8.67 0.00 4.92
7936 8840 0.391661 GGACTCGACACATGTGCCAT 60.392 55.000 25.68 6.44 0.00 4.40
7942 8846 3.669536 TCGACACATGTGCCATAAAAGA 58.330 40.909 25.68 10.23 0.00 2.52
7943 8847 4.260985 TCGACACATGTGCCATAAAAGAT 58.739 39.130 25.68 1.57 0.00 2.40
7944 8848 5.423886 TCGACACATGTGCCATAAAAGATA 58.576 37.500 25.68 0.00 0.00 1.98
7945 8849 5.293324 TCGACACATGTGCCATAAAAGATAC 59.707 40.000 25.68 1.29 0.00 2.24
7956 8862 7.170658 GTGCCATAAAAGATACTTTTTGCACAA 59.829 33.333 28.14 11.97 41.79 3.33
8009 8915 7.342799 ACATAAATAGTTGGAATGAACATGGCT 59.657 33.333 0.00 0.00 0.00 4.75
8012 8918 3.705051 AGTTGGAATGAACATGGCTGAT 58.295 40.909 0.00 0.00 0.00 2.90
8036 8942 5.904362 ATGACTTGCACCTCTTATTTTCC 57.096 39.130 0.00 0.00 0.00 3.13
8044 8950 5.201243 GCACCTCTTATTTTCCCCTGTAAT 58.799 41.667 0.00 0.00 0.00 1.89
8062 8968 4.960469 TGTAATAGGAACTTCATCGGGACT 59.040 41.667 0.00 0.00 41.75 3.85
8086 8992 1.305930 GCCTTAGCCCAACAGGAACG 61.306 60.000 0.00 0.00 38.24 3.95
8273 9179 3.356290 CAACATCACTAGGGAAAAGGGG 58.644 50.000 0.00 0.00 0.00 4.79
8375 9285 2.671914 GCATCAAATTTTGGCTCGCAGA 60.672 45.455 9.18 0.00 0.00 4.26
8390 9300 0.320160 GCAGAAGGGCAAAGCAAAGG 60.320 55.000 0.00 0.00 0.00 3.11
8391 9301 0.320160 CAGAAGGGCAAAGCAAAGGC 60.320 55.000 0.00 0.00 41.61 4.35
8396 9306 2.259511 GCAAAGCAAAGGCCGGAG 59.740 61.111 5.05 0.00 42.56 4.63
8398 9308 1.598701 GCAAAGCAAAGGCCGGAGAT 61.599 55.000 5.05 0.00 42.56 2.75
8400 9310 1.598701 AAAGCAAAGGCCGGAGATGC 61.599 55.000 5.05 9.93 42.56 3.91
8401 9311 2.751436 GCAAAGGCCGGAGATGCA 60.751 61.111 5.05 0.00 37.00 3.96
8471 9386 7.358352 GCAGACAGAAAAATAACACAAATTCGG 60.358 37.037 0.00 0.00 0.00 4.30
8483 9398 7.624360 AACACAAATTCGGATATTCTTGCTA 57.376 32.000 0.00 0.00 0.00 3.49
8490 9405 8.911247 AATTCGGATATTCTTGCTAAAACAAC 57.089 30.769 0.00 0.00 0.00 3.32
8594 9530 7.117812 ACTGTCAAATCAATAGAAAACGACGAT 59.882 33.333 0.00 0.00 0.00 3.73
8605 9541 9.687210 AATAGAAAACGACGATAACAGCATATA 57.313 29.630 0.00 0.00 0.00 0.86
8646 9582 3.742327 GCTGCTGCAGGTTACAGATGATA 60.742 47.826 29.05 0.00 37.32 2.15
8668 9604 5.097742 ACCGATATCACAGATGGAAAACA 57.902 39.130 3.12 0.00 0.00 2.83
8738 9674 2.166459 TGTGCCACCGAAAATCAACAAA 59.834 40.909 0.00 0.00 0.00 2.83
8743 9679 4.509600 GCCACCGAAAATCAACAAAAATGA 59.490 37.500 0.00 0.00 0.00 2.57
8755 9691 4.552166 ACAAAAATGACAGGACAAGTCG 57.448 40.909 0.00 0.00 38.83 4.18
8756 9692 3.243068 ACAAAAATGACAGGACAAGTCGC 60.243 43.478 0.00 0.00 38.83 5.19
8757 9693 2.254546 AAATGACAGGACAAGTCGCA 57.745 45.000 0.00 0.00 38.83 5.10
8759 9695 0.681733 ATGACAGGACAAGTCGCAGT 59.318 50.000 0.00 0.00 38.83 4.40
8760 9696 1.324383 TGACAGGACAAGTCGCAGTA 58.676 50.000 0.00 0.00 38.83 2.74
8762 9698 2.288213 TGACAGGACAAGTCGCAGTAAG 60.288 50.000 0.00 0.00 38.83 2.34
8773 9710 4.304939 AGTCGCAGTAAGGTAGAAACAAC 58.695 43.478 0.00 0.00 0.00 3.32
8776 9713 3.810941 CGCAGTAAGGTAGAAACAACCAA 59.189 43.478 0.00 0.00 39.64 3.67
8778 9715 4.319261 GCAGTAAGGTAGAAACAACCAACG 60.319 45.833 0.00 0.00 39.64 4.10
8780 9717 5.050567 CAGTAAGGTAGAAACAACCAACGAC 60.051 44.000 0.00 0.00 39.64 4.34
8783 9720 5.280654 AGGTAGAAACAACCAACGACTTA 57.719 39.130 0.00 0.00 39.64 2.24
8815 9752 6.566197 AAGAAACCATGAAAGAAGCAGTAG 57.434 37.500 0.00 0.00 0.00 2.57
8819 9756 4.338879 ACCATGAAAGAAGCAGTAGCATT 58.661 39.130 0.00 0.00 45.49 3.56
8839 9776 5.973565 GCATTTAAGAGCGATGTTAAGCAAT 59.026 36.000 8.90 0.00 35.48 3.56
8855 9792 3.073678 AGCAATACATGTCGAAACAGCA 58.926 40.909 0.00 0.00 39.20 4.41
8856 9793 3.691118 AGCAATACATGTCGAAACAGCAT 59.309 39.130 0.00 0.00 39.20 3.79
8866 9803 3.125316 GTCGAAACAGCATAAGGAACCTG 59.875 47.826 0.00 0.00 0.00 4.00
8867 9804 3.007506 TCGAAACAGCATAAGGAACCTGA 59.992 43.478 0.00 0.00 0.00 3.86
8869 9806 4.327680 GAAACAGCATAAGGAACCTGACT 58.672 43.478 0.00 0.00 0.00 3.41
8871 9808 5.499004 AACAGCATAAGGAACCTGACTTA 57.501 39.130 0.00 0.00 34.07 2.24
8933 9870 9.748708 TGATAAACAGATGAAAAAGGAAAACAG 57.251 29.630 0.00 0.00 0.00 3.16
8936 9873 5.836347 ACAGATGAAAAAGGAAAACAGCTC 58.164 37.500 0.00 0.00 0.00 4.09
8937 9874 5.595952 ACAGATGAAAAAGGAAAACAGCTCT 59.404 36.000 0.00 0.00 0.00 4.09
8938 9875 5.919141 CAGATGAAAAAGGAAAACAGCTCTG 59.081 40.000 0.00 0.00 0.00 3.35
8940 9877 6.772716 AGATGAAAAAGGAAAACAGCTCTGTA 59.227 34.615 2.62 0.00 44.13 2.74
8964 9901 2.575735 TGCTCCATCAATACCAGACCAA 59.424 45.455 0.00 0.00 0.00 3.67
8965 9902 3.209410 GCTCCATCAATACCAGACCAAG 58.791 50.000 0.00 0.00 0.00 3.61
8966 9903 3.813443 CTCCATCAATACCAGACCAAGG 58.187 50.000 0.00 0.00 0.00 3.61
8967 9904 2.509548 TCCATCAATACCAGACCAAGGG 59.490 50.000 0.00 0.00 0.00 3.95
8968 9905 2.509548 CCATCAATACCAGACCAAGGGA 59.490 50.000 0.00 0.00 0.00 4.20
8969 9906 3.545703 CATCAATACCAGACCAAGGGAC 58.454 50.000 0.00 0.00 0.00 4.46
8971 9908 2.838202 TCAATACCAGACCAAGGGACTC 59.162 50.000 0.00 0.00 38.49 3.36
8972 9909 2.571653 CAATACCAGACCAAGGGACTCA 59.428 50.000 0.00 0.00 38.49 3.41
8973 9910 1.938585 TACCAGACCAAGGGACTCAG 58.061 55.000 0.00 0.00 38.49 3.35
8974 9911 0.838122 ACCAGACCAAGGGACTCAGG 60.838 60.000 0.00 0.00 38.49 3.86
8975 9912 0.545309 CCAGACCAAGGGACTCAGGA 60.545 60.000 0.00 0.00 38.49 3.86
8976 9913 1.352083 CAGACCAAGGGACTCAGGAA 58.648 55.000 0.00 0.00 38.49 3.36
8977 9914 1.002544 CAGACCAAGGGACTCAGGAAC 59.997 57.143 0.00 0.00 38.49 3.62
8978 9915 1.132689 AGACCAAGGGACTCAGGAACT 60.133 52.381 0.00 0.00 38.49 3.01
8979 9916 1.276705 GACCAAGGGACTCAGGAACTC 59.723 57.143 0.00 0.00 38.49 3.01
8980 9917 1.352083 CCAAGGGACTCAGGAACTCA 58.648 55.000 0.00 0.00 38.49 3.41
8981 9918 1.699634 CCAAGGGACTCAGGAACTCAA 59.300 52.381 0.00 0.00 38.49 3.02
8982 9919 2.551071 CCAAGGGACTCAGGAACTCAAC 60.551 54.545 0.00 0.00 38.49 3.18
8983 9920 2.103153 AGGGACTCAGGAACTCAACA 57.897 50.000 0.00 0.00 34.60 3.33
9002 9939 2.239400 CATCAGCTCCATCATGGCATT 58.761 47.619 0.00 0.00 37.47 3.56
9003 9940 2.447408 TCAGCTCCATCATGGCATTT 57.553 45.000 0.00 0.00 37.47 2.32
9018 9955 0.179174 CATTTAGCCGGAACCGTTGC 60.179 55.000 5.05 9.11 37.81 4.17
9054 9994 4.736473 TGCCATCAGATGATCATTCCAAT 58.264 39.130 12.41 0.00 31.21 3.16
9106 10046 2.717639 AGCCGCTCATTAACAAGGAT 57.282 45.000 0.00 0.00 0.00 3.24
9118 10058 8.547481 TCATTAACAAGGATAGACAGATGGTA 57.453 34.615 0.00 0.00 0.00 3.25
9136 10076 7.930865 CAGATGGTAAAAAGGATGAAAAACCAA 59.069 33.333 0.00 0.00 39.08 3.67
9145 10085 4.590222 AGGATGAAAAACCAAGTGAGCATT 59.410 37.500 0.00 0.00 0.00 3.56
9146 10086 4.925646 GGATGAAAAACCAAGTGAGCATTC 59.074 41.667 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 86 1.382522 CACCGATCCAATGTGGGAAG 58.617 55.000 0.00 0.00 41.12 3.46
85 92 0.034186 ATGCACCACCGATCCAATGT 60.034 50.000 0.00 0.00 0.00 2.71
88 95 0.255604 ATGATGCACCACCGATCCAA 59.744 50.000 0.00 0.00 0.00 3.53
124 133 2.107378 TCATAACCAAAGCACCACCAGA 59.893 45.455 0.00 0.00 0.00 3.86
126 135 2.158534 ACTCATAACCAAAGCACCACCA 60.159 45.455 0.00 0.00 0.00 4.17
136 145 1.880221 CGTGTGGCCACTCATAACCAA 60.880 52.381 34.75 10.14 39.55 3.67
143 152 0.753867 TTTACTCGTGTGGCCACTCA 59.246 50.000 34.75 20.17 39.55 3.41
164 173 5.653769 CCTCCACATATCACCAACAATTCTT 59.346 40.000 0.00 0.00 0.00 2.52
189 198 6.343703 TGATCTGTCAACCATATGTTCTCTG 58.656 40.000 1.24 0.00 34.00 3.35
209 218 1.899142 GAGACATAGGAGGGGCTGATC 59.101 57.143 0.00 0.00 0.00 2.92
221 230 5.589855 TGAAAGCAGAGAGAGAGAGACATAG 59.410 44.000 0.00 0.00 0.00 2.23
222 231 5.504853 TGAAAGCAGAGAGAGAGAGACATA 58.495 41.667 0.00 0.00 0.00 2.29
223 232 4.343231 TGAAAGCAGAGAGAGAGAGACAT 58.657 43.478 0.00 0.00 0.00 3.06
224 233 3.760738 TGAAAGCAGAGAGAGAGAGACA 58.239 45.455 0.00 0.00 0.00 3.41
225 234 4.218417 ACTTGAAAGCAGAGAGAGAGAGAC 59.782 45.833 0.00 0.00 0.00 3.36
246 282 2.698797 TCCCGTCTCTTCTGTTGAAACT 59.301 45.455 0.00 0.00 0.00 2.66
254 290 3.085533 TCTCTCTTTCCCGTCTCTTCTG 58.914 50.000 0.00 0.00 0.00 3.02
269 305 0.948050 ACCCCTCCATCCATCTCTCT 59.052 55.000 0.00 0.00 0.00 3.10
275 311 2.509964 GTTGTTCTACCCCTCCATCCAT 59.490 50.000 0.00 0.00 0.00 3.41
304 340 5.326283 AGCTTTTTAAAAGAGAGGGAGGT 57.674 39.130 20.14 0.00 0.00 3.85
439 476 0.106918 TCCTTGCAACCACCTTTCGT 60.107 50.000 0.00 0.00 0.00 3.85
454 491 2.612115 CCTCCTGCCCCACTCCTT 60.612 66.667 0.00 0.00 0.00 3.36
463 500 0.390472 CGTTTCTGTCTCCTCCTGCC 60.390 60.000 0.00 0.00 0.00 4.85
512 549 1.988539 TAGAGAGAGAGGGGAGGTGT 58.011 55.000 0.00 0.00 0.00 4.16
513 550 2.716424 AGATAGAGAGAGAGGGGAGGTG 59.284 54.545 0.00 0.00 0.00 4.00
514 551 3.089421 AGATAGAGAGAGAGGGGAGGT 57.911 52.381 0.00 0.00 0.00 3.85
515 552 4.263771 GGTTAGATAGAGAGAGAGGGGAGG 60.264 54.167 0.00 0.00 0.00 4.30
516 553 4.263771 GGGTTAGATAGAGAGAGAGGGGAG 60.264 54.167 0.00 0.00 0.00 4.30
517 554 3.658705 GGGTTAGATAGAGAGAGAGGGGA 59.341 52.174 0.00 0.00 0.00 4.81
518 555 3.660669 AGGGTTAGATAGAGAGAGAGGGG 59.339 52.174 0.00 0.00 0.00 4.79
522 571 5.221762 CCGAAGAGGGTTAGATAGAGAGAGA 60.222 48.000 0.00 0.00 35.97 3.10
531 580 3.025262 GACTGTCCGAAGAGGGTTAGAT 58.975 50.000 0.00 0.00 41.52 1.98
558 607 0.676184 TCTGTGTGTGTGAGGAGAGC 59.324 55.000 0.00 0.00 0.00 4.09
560 609 1.409064 GTGTCTGTGTGTGTGAGGAGA 59.591 52.381 0.00 0.00 0.00 3.71
585 656 4.100189 GCTAGAGACAGAGAGAGAGAGAGT 59.900 50.000 0.00 0.00 0.00 3.24
647 718 2.647680 TTCAACACGTCCCACGACCC 62.648 60.000 2.48 0.00 46.05 4.46
802 882 2.433994 GCAGAGGCAGAGAGGGAGG 61.434 68.421 0.00 0.00 40.72 4.30
806 886 2.433994 GGAGGCAGAGGCAGAGAGG 61.434 68.421 0.00 0.00 43.71 3.69
867 951 0.923358 GACCAGAGAGAGAGGGAGGA 59.077 60.000 0.00 0.00 0.00 3.71
890 974 2.446802 GGGTAGGAGGGGCTGGAG 60.447 72.222 0.00 0.00 0.00 3.86
891 975 4.103928 GGGGTAGGAGGGGCTGGA 62.104 72.222 0.00 0.00 0.00 3.86
893 977 4.798682 ACGGGGTAGGAGGGGCTG 62.799 72.222 0.00 0.00 0.00 4.85
894 978 4.477119 GACGGGGTAGGAGGGGCT 62.477 72.222 0.00 0.00 0.00 5.19
895 979 4.477119 AGACGGGGTAGGAGGGGC 62.477 72.222 0.00 0.00 0.00 5.80
896 980 2.123382 GAGACGGGGTAGGAGGGG 60.123 72.222 0.00 0.00 0.00 4.79
899 983 0.179012 GGAGAGAGACGGGGTAGGAG 60.179 65.000 0.00 0.00 0.00 3.69
900 984 1.643475 GGGAGAGAGACGGGGTAGGA 61.643 65.000 0.00 0.00 0.00 2.94
904 988 1.212934 TAGTGGGAGAGAGACGGGGT 61.213 60.000 0.00 0.00 0.00 4.95
905 989 0.752376 GTAGTGGGAGAGAGACGGGG 60.752 65.000 0.00 0.00 0.00 5.73
907 991 2.944349 GTTAGTAGTGGGAGAGAGACGG 59.056 54.545 0.00 0.00 0.00 4.79
909 993 5.124297 GTGAAGTTAGTAGTGGGAGAGAGAC 59.876 48.000 0.00 0.00 0.00 3.36
910 994 5.014333 AGTGAAGTTAGTAGTGGGAGAGAGA 59.986 44.000 0.00 0.00 0.00 3.10
917 1003 3.368531 GCCAGAGTGAAGTTAGTAGTGGG 60.369 52.174 0.00 0.00 0.00 4.61
922 1008 3.764434 CAGAGGCCAGAGTGAAGTTAGTA 59.236 47.826 5.01 0.00 0.00 1.82
945 1031 0.108898 CTGCCAACGAGAGACCAGAG 60.109 60.000 0.00 0.00 0.00 3.35
980 1066 3.320879 ATCACCACCTCTGCTGCCG 62.321 63.158 0.00 0.00 0.00 5.69
981 1067 1.451028 GATCACCACCTCTGCTGCC 60.451 63.158 0.00 0.00 0.00 4.85
982 1068 0.107312 ATGATCACCACCTCTGCTGC 60.107 55.000 0.00 0.00 0.00 5.25
983 1069 1.664873 CATGATCACCACCTCTGCTG 58.335 55.000 0.00 0.00 0.00 4.41
1116 1202 2.900671 GATGGGGTTGGAGCTGGAGC 62.901 65.000 0.00 0.00 42.49 4.70
1383 1484 1.328680 GCATGCACACGATCGAGATTT 59.671 47.619 24.34 0.00 0.00 2.17
1423 1524 7.481798 GCGTGGAATAAGTCTGTTAAAAAGATG 59.518 37.037 0.00 0.00 0.00 2.90
1424 1525 7.174253 TGCGTGGAATAAGTCTGTTAAAAAGAT 59.826 33.333 0.00 0.00 0.00 2.40
1426 1527 6.577427 GTGCGTGGAATAAGTCTGTTAAAAAG 59.423 38.462 0.00 0.00 0.00 2.27
1428 1529 5.527951 TGTGCGTGGAATAAGTCTGTTAAAA 59.472 36.000 0.00 0.00 0.00 1.52
1429 1530 5.049954 GTGTGCGTGGAATAAGTCTGTTAAA 60.050 40.000 0.00 0.00 0.00 1.52
1430 1531 4.449743 GTGTGCGTGGAATAAGTCTGTTAA 59.550 41.667 0.00 0.00 0.00 2.01
1431 1532 3.991773 GTGTGCGTGGAATAAGTCTGTTA 59.008 43.478 0.00 0.00 0.00 2.41
1435 1536 2.224185 TGTGTGTGCGTGGAATAAGTCT 60.224 45.455 0.00 0.00 0.00 3.24
1436 1537 2.139917 TGTGTGTGCGTGGAATAAGTC 58.860 47.619 0.00 0.00 0.00 3.01
1508 1609 2.034687 AAATGGAGCTGGTGCGCT 59.965 55.556 9.73 0.00 45.42 5.92
1857 1992 2.920912 GGTGGAGGTGGTGGTCGA 60.921 66.667 0.00 0.00 0.00 4.20
1879 2014 4.875713 ATCATTCCGCCGGGGTGC 62.876 66.667 18.27 0.00 37.00 5.01
2119 2287 0.716108 CAAGGACGACGACATGCTTC 59.284 55.000 0.00 0.00 0.00 3.86
2121 2289 1.079819 CCAAGGACGACGACATGCT 60.080 57.895 0.00 0.00 0.00 3.79
2141 2309 2.359967 GGAGGGGAGGTCAACCGAG 61.360 68.421 0.00 0.00 42.08 4.63
2246 2434 1.994399 TCCTCTCTCTCTCCCTTCCT 58.006 55.000 0.00 0.00 0.00 3.36
2285 2486 0.184933 TTGGTGTTCCTGTTCCCCTG 59.815 55.000 0.00 0.00 34.23 4.45
2336 2537 5.048507 CGCTGCATGCATAGATAGATACAT 58.951 41.667 22.97 0.00 43.06 2.29
2337 2538 4.427312 CGCTGCATGCATAGATAGATACA 58.573 43.478 22.97 0.00 43.06 2.29
2338 2539 3.801050 CCGCTGCATGCATAGATAGATAC 59.199 47.826 22.97 0.16 43.06 2.24
2339 2540 3.739209 GCCGCTGCATGCATAGATAGATA 60.739 47.826 22.97 0.00 43.06 1.98
2380 2590 2.768769 GCCAGGTACCCTCCTCCC 60.769 72.222 8.74 0.00 35.37 4.30
2381 2591 3.155167 CGCCAGGTACCCTCCTCC 61.155 72.222 8.74 0.00 35.37 4.30
2382 2592 3.155167 CCGCCAGGTACCCTCCTC 61.155 72.222 8.74 0.00 35.37 3.71
2383 2593 4.798682 CCCGCCAGGTACCCTCCT 62.799 72.222 8.74 0.00 38.51 3.69
2511 2721 1.066002 CTGGGCCAGTGAATTAATGCG 59.934 52.381 25.74 0.00 0.00 4.73
2512 2722 2.099756 GACTGGGCCAGTGAATTAATGC 59.900 50.000 42.11 20.93 45.44 3.56
2513 2723 2.355756 CGACTGGGCCAGTGAATTAATG 59.644 50.000 42.11 17.00 45.44 1.90
2517 2727 0.321653 GACGACTGGGCCAGTGAATT 60.322 55.000 42.11 22.75 45.44 2.17
2519 2729 2.741092 GACGACTGGGCCAGTGAA 59.259 61.111 42.11 1.10 45.44 3.18
2568 2778 1.019805 GGAGCTACGCCAAGGAACAC 61.020 60.000 0.00 0.00 0.00 3.32
2714 2933 2.048127 GGGAGAGTGGTCACGCAC 60.048 66.667 7.51 1.23 36.20 5.34
2721 2940 1.417890 CAAACAGTGAGGGAGAGTGGT 59.582 52.381 0.00 0.00 0.00 4.16
2722 2941 1.879796 GCAAACAGTGAGGGAGAGTGG 60.880 57.143 0.00 0.00 0.00 4.00
2723 2942 1.517242 GCAAACAGTGAGGGAGAGTG 58.483 55.000 0.00 0.00 0.00 3.51
2724 2943 0.398318 GGCAAACAGTGAGGGAGAGT 59.602 55.000 0.00 0.00 0.00 3.24
2725 2944 0.689623 AGGCAAACAGTGAGGGAGAG 59.310 55.000 0.00 0.00 0.00 3.20
2726 2945 0.397941 CAGGCAAACAGTGAGGGAGA 59.602 55.000 0.00 0.00 0.00 3.71
2728 2947 1.228245 GCAGGCAAACAGTGAGGGA 60.228 57.895 0.00 0.00 0.00 4.20
2729 2948 2.620112 CGCAGGCAAACAGTGAGGG 61.620 63.158 0.00 0.00 0.00 4.30
2730 2949 1.447317 AACGCAGGCAAACAGTGAGG 61.447 55.000 0.00 0.00 0.00 3.86
2753 2972 1.657751 GCGAATTCCCCTGTTCAGCC 61.658 60.000 0.00 0.00 0.00 4.85
2902 3121 3.112205 ATCATCACCTCCTGCCGCC 62.112 63.158 0.00 0.00 0.00 6.13
2903 3122 1.890979 CATCATCACCTCCTGCCGC 60.891 63.158 0.00 0.00 0.00 6.53
2915 3134 3.548745 TCATCAGTGGTCACCATCATC 57.451 47.619 0.00 0.00 35.28 2.92
3229 3460 0.178944 TGGGGAGTGAGAAGGACGAA 60.179 55.000 0.00 0.00 0.00 3.85
3383 3619 4.367023 TACCACTCGGCCGTGCAC 62.367 66.667 27.15 6.82 34.57 4.57
3384 3620 4.367023 GTACCACTCGGCCGTGCA 62.367 66.667 27.15 4.62 34.57 4.57
3397 3633 3.092854 CACAAACACAAACGAACGTACC 58.907 45.455 0.00 0.00 0.00 3.34
3404 3640 4.247258 ACTGACTACACAAACACAAACGA 58.753 39.130 0.00 0.00 0.00 3.85
3498 3734 1.186200 CTGCTGCAGGAGTACCACTA 58.814 55.000 25.76 0.00 38.94 2.74
3511 3750 1.229428 TGTCTTGTGCTTACTGCTGC 58.771 50.000 0.00 0.00 43.37 5.25
3552 3792 5.593909 CCTCCATCATACATAGAGGCTCTAG 59.406 48.000 26.79 20.29 37.88 2.43
3553 3793 5.254032 TCCTCCATCATACATAGAGGCTCTA 59.746 44.000 25.44 25.44 43.21 2.43
3554 3794 4.045207 TCCTCCATCATACATAGAGGCTCT 59.955 45.833 22.48 22.48 43.21 4.09
3555 3795 4.348486 TCCTCCATCATACATAGAGGCTC 58.652 47.826 6.34 6.34 43.21 4.70
3556 3796 4.045207 TCTCCTCCATCATACATAGAGGCT 59.955 45.833 0.00 0.00 43.21 4.58
3557 3797 4.348486 TCTCCTCCATCATACATAGAGGC 58.652 47.826 0.00 0.00 43.21 4.70
3558 3798 6.924913 TTTCTCCTCCATCATACATAGAGG 57.075 41.667 0.00 0.00 44.59 3.69
3559 3799 7.385267 CCTTTTCTCCTCCATCATACATAGAG 58.615 42.308 0.00 0.00 0.00 2.43
3561 3801 5.936956 GCCTTTTCTCCTCCATCATACATAG 59.063 44.000 0.00 0.00 0.00 2.23
3562 3802 5.221925 GGCCTTTTCTCCTCCATCATACATA 60.222 44.000 0.00 0.00 0.00 2.29
3563 3803 4.446889 GGCCTTTTCTCCTCCATCATACAT 60.447 45.833 0.00 0.00 0.00 2.29
3564 3804 3.117888 GGCCTTTTCTCCTCCATCATACA 60.118 47.826 0.00 0.00 0.00 2.29
3565 3805 3.117888 TGGCCTTTTCTCCTCCATCATAC 60.118 47.826 3.32 0.00 0.00 2.39
3566 3806 3.122480 TGGCCTTTTCTCCTCCATCATA 58.878 45.455 3.32 0.00 0.00 2.15
3567 3807 1.925255 TGGCCTTTTCTCCTCCATCAT 59.075 47.619 3.32 0.00 0.00 2.45
3568 3808 1.371467 TGGCCTTTTCTCCTCCATCA 58.629 50.000 3.32 0.00 0.00 3.07
3569 3809 2.305009 CATGGCCTTTTCTCCTCCATC 58.695 52.381 3.32 0.00 35.51 3.51
3570 3810 1.687368 GCATGGCCTTTTCTCCTCCAT 60.687 52.381 3.32 0.00 37.99 3.41
3571 3811 0.323725 GCATGGCCTTTTCTCCTCCA 60.324 55.000 3.32 0.00 0.00 3.86
3572 3812 0.033699 AGCATGGCCTTTTCTCCTCC 60.034 55.000 3.32 0.00 0.00 4.30
3703 3943 2.489329 CCCGTTCCATCCATCATTATGC 59.511 50.000 0.00 0.00 0.00 3.14
3704 3944 3.754965 ACCCGTTCCATCCATCATTATG 58.245 45.455 0.00 0.00 0.00 1.90
3705 3945 4.453480 AACCCGTTCCATCCATCATTAT 57.547 40.909 0.00 0.00 0.00 1.28
3723 3967 0.038310 AAGGCAGTCCAAGGCTAACC 59.962 55.000 0.00 0.00 41.47 2.85
3725 3969 1.705186 AGAAAGGCAGTCCAAGGCTAA 59.295 47.619 0.00 0.00 41.47 3.09
3771 4015 6.950860 TCATGGTATGATCCTGCCTTTATA 57.049 37.500 6.67 0.00 33.59 0.98
3866 4120 1.357258 GCCATCACAGTCACAGCTCG 61.357 60.000 0.00 0.00 0.00 5.03
3867 4121 1.023513 GGCCATCACAGTCACAGCTC 61.024 60.000 0.00 0.00 0.00 4.09
3868 4122 1.002868 GGCCATCACAGTCACAGCT 60.003 57.895 0.00 0.00 0.00 4.24
3869 4123 1.302752 TGGCCATCACAGTCACAGC 60.303 57.895 0.00 0.00 0.00 4.40
3870 4124 1.303799 GCTGGCCATCACAGTCACAG 61.304 60.000 5.51 0.00 38.22 3.66
3871 4125 1.302752 GCTGGCCATCACAGTCACA 60.303 57.895 5.51 0.00 38.22 3.58
3872 4126 1.302752 TGCTGGCCATCACAGTCAC 60.303 57.895 5.51 0.00 38.22 3.67
3873 4127 1.002990 CTGCTGGCCATCACAGTCA 60.003 57.895 5.51 0.00 38.22 3.41
3874 4128 2.404995 GCTGCTGGCCATCACAGTC 61.405 63.158 23.81 15.80 38.22 3.51
3875 4129 2.360852 GCTGCTGGCCATCACAGT 60.361 61.111 23.81 0.00 38.22 3.55
3876 4130 0.464916 TATGCTGCTGGCCATCACAG 60.465 55.000 20.70 20.70 40.92 3.66
3877 4131 0.464916 CTATGCTGCTGGCCATCACA 60.465 55.000 5.51 10.06 40.92 3.58
3895 4149 4.135153 CGAGCCAGCCACGCTACT 62.135 66.667 0.00 0.00 36.40 2.57
3953 4209 0.857675 ACCCCAGTAGCCTTTTTGGT 59.142 50.000 0.00 0.00 38.35 3.67
4054 4318 1.300931 CACAGTGTAGTGTGGCGCT 60.301 57.895 7.64 0.00 43.56 5.92
4112 4377 0.250124 TTTCGAATCACACGGGTGCT 60.250 50.000 14.50 0.00 44.87 4.40
4126 4392 5.986741 TGCACACTGACTTAGTAATTTTCGA 59.013 36.000 0.00 0.00 37.60 3.71
4629 4901 1.471153 GGTACGGAGTTAGAGCAAGGC 60.471 57.143 0.00 0.00 37.78 4.35
4654 4926 2.769095 CAAAGGACACCAAGGGGAAAAA 59.231 45.455 0.00 0.00 38.05 1.94
4804 5077 0.608856 AACCACGCAAGATGATGGCA 60.609 50.000 0.00 0.00 43.62 4.92
4926 5205 3.190535 GCACGGTGATCAAAGGTATGTTT 59.809 43.478 13.29 0.00 0.00 2.83
5110 5405 1.856629 AAGGCATCAAATGGACTGGG 58.143 50.000 0.00 0.00 0.00 4.45
5111 5406 2.827322 TCAAAGGCATCAAATGGACTGG 59.173 45.455 0.00 0.00 0.00 4.00
5130 5429 9.793259 AATATTGTGAGAGGAAAGTACTTTTCA 57.207 29.630 25.24 19.27 45.70 2.69
5139 5438 5.803967 GCAAAGCAATATTGTGAGAGGAAAG 59.196 40.000 16.61 0.00 0.00 2.62
5153 5452 1.820519 CCTGGAGCAAGCAAAGCAATA 59.179 47.619 0.00 0.00 0.00 1.90
5159 5458 0.998928 TATCCCCTGGAGCAAGCAAA 59.001 50.000 0.00 0.00 34.05 3.68
5167 5466 2.564947 CTCCGAGAAATATCCCCTGGAG 59.435 54.545 0.00 0.00 34.05 3.86
5608 5918 1.251527 TGACCTTGAGGAGCTCGGAC 61.252 60.000 7.83 3.96 38.94 4.79
5639 5949 2.223971 GCAATGCATGGGAAGAAGATGG 60.224 50.000 0.00 0.00 0.00 3.51
5783 6093 0.673022 GCCCGATCAGGATCTGCATC 60.673 60.000 0.00 0.00 45.00 3.91
6041 6351 0.742281 CCAAGAGGAGTGATGTGCGG 60.742 60.000 0.00 0.00 36.89 5.69
6043 6353 1.277557 AGTCCAAGAGGAGTGATGTGC 59.722 52.381 0.00 0.00 46.92 4.57
6051 6361 2.169978 TGATGATGCAGTCCAAGAGGAG 59.830 50.000 0.00 0.00 46.92 3.69
6052 6362 2.190538 TGATGATGCAGTCCAAGAGGA 58.809 47.619 0.00 0.00 43.21 3.71
6053 6363 2.704464 TGATGATGCAGTCCAAGAGG 57.296 50.000 0.00 0.00 0.00 3.69
6054 6364 3.139850 GGATGATGATGCAGTCCAAGAG 58.860 50.000 0.00 0.00 0.00 2.85
6055 6365 2.775960 AGGATGATGATGCAGTCCAAGA 59.224 45.455 0.00 0.00 0.00 3.02
6058 6368 2.121129 TCAGGATGATGATGCAGTCCA 58.879 47.619 0.00 0.00 42.56 4.02
6059 6369 2.924757 TCAGGATGATGATGCAGTCC 57.075 50.000 0.00 0.00 42.56 3.85
6075 6393 2.880890 ACCTAACAGCAGCAAGTTTCAG 59.119 45.455 8.35 2.13 0.00 3.02
6077 6395 2.878406 TGACCTAACAGCAGCAAGTTTC 59.122 45.455 8.35 2.35 0.00 2.78
6095 6413 6.369065 ACGTTTGATTCAAGAGAGGTTATGAC 59.631 38.462 0.00 0.00 0.00 3.06
6131 6476 6.155827 TGTAGCATGAATTTTACTTTGCCAC 58.844 36.000 0.00 0.00 0.00 5.01
6132 6477 6.015519 ACTGTAGCATGAATTTTACTTTGCCA 60.016 34.615 0.00 0.00 0.00 4.92
6133 6478 6.389906 ACTGTAGCATGAATTTTACTTTGCC 58.610 36.000 0.00 0.00 0.00 4.52
6285 6630 2.545526 GCTAGAAAGCGCTAATGATGCA 59.454 45.455 12.05 0.00 39.39 3.96
6308 6653 9.760660 GTTTTATAATAAGAGGCTGATTATGCG 57.239 33.333 12.73 0.00 30.38 4.73
6384 6733 6.919662 CACCAACTTGTCTAGAAAACGTAGTA 59.080 38.462 0.00 0.00 45.00 1.82
6386 6735 5.176958 CCACCAACTTGTCTAGAAAACGTAG 59.823 44.000 0.00 0.00 0.00 3.51
6425 6774 1.400494 CAGGAATAAACCTTTCCCGCG 59.600 52.381 0.00 0.00 43.08 6.46
6606 6960 1.226945 GGCTGGCACAACACAACAC 60.227 57.895 0.00 0.00 38.70 3.32
6607 6961 1.680314 TGGCTGGCACAACACAACA 60.680 52.632 0.00 0.00 38.70 3.33
6691 7052 6.692486 AGGATACGATTTTTCTCGCTATGAT 58.308 36.000 0.00 0.00 42.35 2.45
6749 7110 3.386726 GGTAGGAACCCTTGCAACTTTTT 59.613 43.478 0.00 0.00 40.21 1.94
6786 7147 6.016276 TCCTTTTCTGATGGTTTTTCTGTAGC 60.016 38.462 0.00 0.00 0.00 3.58
6822 7183 2.304761 TCCACGGAGCTGAAATTTAGGT 59.695 45.455 0.00 0.00 0.00 3.08
6824 7185 3.334691 TGTCCACGGAGCTGAAATTTAG 58.665 45.455 0.00 0.00 0.00 1.85
6906 7267 9.765795 AAGATAATCCATAAAAAGTCTAGACGG 57.234 33.333 17.07 10.37 36.20 4.79
6948 7309 6.326064 TCTCAATCTTCTCTTATCCCTTGAGG 59.674 42.308 8.57 0.00 39.05 3.86
6961 7322 5.942826 ACAAAATGGAGGTCTCAATCTTCTC 59.057 40.000 0.14 0.00 0.00 2.87
6992 7353 2.561419 GGCTGGGAAAAGGTAGGAAAAC 59.439 50.000 0.00 0.00 0.00 2.43
7008 7370 2.097825 CTCAAAAGGAATCAGGGCTGG 58.902 52.381 0.00 0.00 0.00 4.85
7009 7371 3.077484 TCTCAAAAGGAATCAGGGCTG 57.923 47.619 0.00 0.00 0.00 4.85
7285 7676 0.034756 TAGCCAGCTTTTCGTGAGCA 59.965 50.000 0.00 0.00 42.56 4.26
7296 7687 7.775093 TGATTAGTATCAACAAAATAGCCAGCT 59.225 33.333 0.00 0.00 37.83 4.24
7445 8348 1.412710 TCTGCTTTCGACACTGGTTCT 59.587 47.619 0.00 0.00 0.00 3.01
7452 8355 4.806247 ACTGCTATATTCTGCTTTCGACAC 59.194 41.667 0.00 0.00 0.00 3.67
7453 8356 4.805719 CACTGCTATATTCTGCTTTCGACA 59.194 41.667 0.00 0.00 0.00 4.35
7544 8447 0.107897 ACGACATAGAATGCCGGCAA 60.108 50.000 36.33 18.56 40.58 4.52
7612 8515 4.827284 AGTAAGTCACCCAAAAGACAATGG 59.173 41.667 0.00 0.00 37.23 3.16
7684 8587 1.347221 GTTGTTAGAATCCGGCGCG 59.653 57.895 0.00 0.00 0.00 6.86
7715 8618 1.453155 CAATGGAGAGGAAACACCGG 58.547 55.000 0.00 0.00 44.74 5.28
7733 8636 2.440796 CGGCGGTAGTACTCCCCA 60.441 66.667 0.00 0.00 0.00 4.96
7760 8663 0.835543 AAGCCCAGAGACTGCTGAGT 60.836 55.000 0.00 0.00 38.14 3.41
7803 8706 0.308993 AGTTTTTGCAGCTGAGCGAC 59.691 50.000 20.43 8.64 37.31 5.19
7827 8730 8.015185 ACTTGGGTAAACGCTAAGAATATAGA 57.985 34.615 12.67 0.00 0.00 1.98
7840 8743 8.859517 TTATTTTTCTGAAACTTGGGTAAACG 57.140 30.769 1.58 0.00 0.00 3.60
7845 8748 9.679661 ATGTTTTTATTTTTCTGAAACTTGGGT 57.320 25.926 1.58 0.00 32.84 4.51
7863 8766 8.839310 CCCAATTGGTTTCACATATGTTTTTA 57.161 30.769 22.91 0.00 0.00 1.52
7880 8783 6.180472 ACTAATAAGTGACTCACCCAATTGG 58.820 40.000 18.21 18.21 34.49 3.16
7882 8785 7.231467 ACAACTAATAAGTGACTCACCCAATT 58.769 34.615 5.51 6.13 35.62 2.32
7886 8789 6.228258 TGAACAACTAATAAGTGACTCACCC 58.772 40.000 5.51 0.00 35.62 4.61
7993 8899 5.892686 TCATTATCAGCCATGTTCATTCCAA 59.107 36.000 0.00 0.00 0.00 3.53
7996 8902 6.630444 AGTCATTATCAGCCATGTTCATTC 57.370 37.500 0.00 0.00 0.00 2.67
8009 8915 8.579850 AAAATAAGAGGTGCAAGTCATTATCA 57.420 30.769 0.00 0.00 0.00 2.15
8012 8918 6.377146 GGGAAAATAAGAGGTGCAAGTCATTA 59.623 38.462 0.00 0.00 0.00 1.90
8036 8942 4.503296 CCCGATGAAGTTCCTATTACAGGG 60.503 50.000 0.00 0.00 45.58 4.45
8044 8950 3.024547 CTCAGTCCCGATGAAGTTCCTA 58.975 50.000 0.00 0.00 0.00 2.94
8062 8968 0.615331 CTGTTGGGCTAAGGCTCTCA 59.385 55.000 0.00 0.00 40.19 3.27
8107 9013 2.830827 TGTTGCGGTTGGTGGTGG 60.831 61.111 0.00 0.00 0.00 4.61
8273 9179 1.293179 GCACCCCAACAATTGCTCC 59.707 57.895 5.05 0.00 32.00 4.70
8375 9285 2.871253 CGGCCTTTGCTTTGCCCTT 61.871 57.895 0.00 0.00 42.29 3.95
8390 9300 3.285215 CAGCCATGCATCTCCGGC 61.285 66.667 16.09 16.09 45.23 6.13
8400 9310 1.826921 GGGTCCATGAGCAGCCATG 60.827 63.158 13.99 13.99 42.58 3.66
8401 9311 2.599597 GGGTCCATGAGCAGCCAT 59.400 61.111 0.00 0.00 0.00 4.40
8471 9386 6.775594 AGGGGTTGTTTTAGCAAGAATATC 57.224 37.500 0.00 0.00 0.00 1.63
8490 9405 9.898152 TCCTTTTGCAAAATAAATAATAAGGGG 57.102 29.630 24.06 16.18 0.00 4.79
8566 9502 7.568679 CGTCGTTTTCTATTGATTTGACAGTCA 60.569 37.037 0.00 0.00 0.00 3.41
8605 9541 5.049828 GCAGCTGTCCTTAATTGTTTGTTT 58.950 37.500 16.64 0.00 0.00 2.83
8646 9582 5.097742 TGTTTTCCATCTGTGATATCGGT 57.902 39.130 0.00 0.00 0.00 4.69
8668 9604 9.753674 TTTATGGTTTCCATGTAATCTTCTCTT 57.246 29.630 11.04 0.00 44.84 2.85
8703 9639 1.506262 GCACATTTTCATCGGCGGT 59.494 52.632 7.21 0.00 0.00 5.68
8738 9674 2.146342 CTGCGACTTGTCCTGTCATTT 58.854 47.619 0.00 0.00 34.37 2.32
8743 9679 1.000955 CCTTACTGCGACTTGTCCTGT 59.999 52.381 0.00 2.29 0.00 4.00
8755 9691 4.319261 CGTTGGTTGTTTCTACCTTACTGC 60.319 45.833 0.00 0.00 36.60 4.40
8756 9692 5.050567 GTCGTTGGTTGTTTCTACCTTACTG 60.051 44.000 0.00 0.00 36.60 2.74
8757 9693 5.052481 GTCGTTGGTTGTTTCTACCTTACT 58.948 41.667 0.00 0.00 36.60 2.24
8759 9695 5.280654 AGTCGTTGGTTGTTTCTACCTTA 57.719 39.130 0.00 0.00 36.60 2.69
8760 9696 4.146745 AGTCGTTGGTTGTTTCTACCTT 57.853 40.909 0.00 0.00 36.60 3.50
8762 9698 6.203338 TCAATAAGTCGTTGGTTGTTTCTACC 59.797 38.462 0.00 0.00 36.17 3.18
8773 9710 5.356882 TCTTTTGCTCAATAAGTCGTTGG 57.643 39.130 0.00 0.00 0.00 3.77
8776 9713 5.298276 TGGTTTCTTTTGCTCAATAAGTCGT 59.702 36.000 0.00 0.00 0.00 4.34
8778 9715 7.370383 TCATGGTTTCTTTTGCTCAATAAGTC 58.630 34.615 0.00 0.00 0.00 3.01
8780 9717 8.592105 TTTCATGGTTTCTTTTGCTCAATAAG 57.408 30.769 0.00 0.00 0.00 1.73
8783 9720 6.819284 TCTTTCATGGTTTCTTTTGCTCAAT 58.181 32.000 0.00 0.00 0.00 2.57
8815 9752 4.908736 TGCTTAACATCGCTCTTAAATGC 58.091 39.130 0.00 0.00 0.00 3.56
8819 9756 7.279981 ACATGTATTGCTTAACATCGCTCTTAA 59.720 33.333 0.00 0.00 34.12 1.85
8839 9776 5.079689 TCCTTATGCTGTTTCGACATGTA 57.920 39.130 0.00 0.00 0.00 2.29
8889 9826 3.685139 TCAGGTGTGAACTTCCATCTC 57.315 47.619 0.00 0.00 0.00 2.75
8920 9857 6.515696 GCATCTACAGAGCTGTTTTCCTTTTT 60.516 38.462 8.60 0.00 41.83 1.94
8925 9862 3.604582 AGCATCTACAGAGCTGTTTTCC 58.395 45.455 8.60 0.00 41.83 3.13
8926 9863 3.620821 GGAGCATCTACAGAGCTGTTTTC 59.379 47.826 8.60 0.00 44.42 2.29
8929 9866 2.182827 TGGAGCATCTACAGAGCTGTT 58.817 47.619 8.60 0.00 44.42 3.16
8931 9868 2.364647 TGATGGAGCATCTACAGAGCTG 59.635 50.000 0.00 0.00 41.06 4.24
8932 9869 2.675583 TGATGGAGCATCTACAGAGCT 58.324 47.619 0.00 0.00 41.06 4.09
8933 9870 3.465742 TTGATGGAGCATCTACAGAGC 57.534 47.619 0.00 0.00 41.06 4.09
8936 9873 5.011431 TCTGGTATTGATGGAGCATCTACAG 59.989 44.000 0.00 0.00 41.06 2.74
8937 9874 4.901250 TCTGGTATTGATGGAGCATCTACA 59.099 41.667 0.00 0.00 41.06 2.74
8938 9875 5.233988 GTCTGGTATTGATGGAGCATCTAC 58.766 45.833 0.00 0.00 41.06 2.59
8939 9876 4.284490 GGTCTGGTATTGATGGAGCATCTA 59.716 45.833 0.00 0.00 41.06 1.98
8940 9877 3.072184 GGTCTGGTATTGATGGAGCATCT 59.928 47.826 0.00 0.00 41.06 2.90
8964 9901 2.103153 TGTTGAGTTCCTGAGTCCCT 57.897 50.000 0.00 0.00 0.00 4.20
8965 9902 2.303022 TGATGTTGAGTTCCTGAGTCCC 59.697 50.000 0.00 0.00 0.00 4.46
8966 9903 3.594134 CTGATGTTGAGTTCCTGAGTCC 58.406 50.000 0.00 0.00 0.00 3.85
8967 9904 2.999355 GCTGATGTTGAGTTCCTGAGTC 59.001 50.000 0.00 0.00 0.00 3.36
8968 9905 2.636893 AGCTGATGTTGAGTTCCTGAGT 59.363 45.455 0.00 0.00 0.00 3.41
8969 9906 3.260740 GAGCTGATGTTGAGTTCCTGAG 58.739 50.000 0.00 0.00 0.00 3.35
8970 9907 2.027745 GGAGCTGATGTTGAGTTCCTGA 60.028 50.000 0.00 0.00 37.73 3.86
8971 9908 2.289882 TGGAGCTGATGTTGAGTTCCTG 60.290 50.000 0.00 0.00 40.53 3.86
8972 9909 1.980765 TGGAGCTGATGTTGAGTTCCT 59.019 47.619 0.00 0.00 40.53 3.36
8973 9910 2.479566 TGGAGCTGATGTTGAGTTCC 57.520 50.000 0.00 0.00 40.36 3.62
8974 9911 3.603532 TGATGGAGCTGATGTTGAGTTC 58.396 45.455 0.00 0.00 0.00 3.01
8975 9912 3.708403 TGATGGAGCTGATGTTGAGTT 57.292 42.857 0.00 0.00 0.00 3.01
8976 9913 3.542648 CATGATGGAGCTGATGTTGAGT 58.457 45.455 0.00 0.00 0.00 3.41
8977 9914 2.879026 CCATGATGGAGCTGATGTTGAG 59.121 50.000 5.27 0.00 40.96 3.02
8978 9915 2.927028 CCATGATGGAGCTGATGTTGA 58.073 47.619 5.27 0.00 40.96 3.18
8979 9916 1.337071 GCCATGATGGAGCTGATGTTG 59.663 52.381 17.22 0.00 40.96 3.33
8980 9917 1.064240 TGCCATGATGGAGCTGATGTT 60.064 47.619 17.22 0.00 40.96 2.71
8981 9918 0.549469 TGCCATGATGGAGCTGATGT 59.451 50.000 17.22 0.00 40.96 3.06
8982 9919 1.911057 ATGCCATGATGGAGCTGATG 58.089 50.000 17.22 0.00 40.96 3.07
8983 9920 2.677542 AATGCCATGATGGAGCTGAT 57.322 45.000 17.22 0.00 40.96 2.90
9002 9939 2.358984 GGCAACGGTTCCGGCTAA 60.359 61.111 15.66 0.00 0.00 3.09
9003 9940 3.599285 CTGGCAACGGTTCCGGCTA 62.599 63.158 15.66 7.19 42.51 3.93
9013 9950 2.051345 GTTTCACGCCTGGCAACG 60.051 61.111 20.29 4.90 42.51 4.10
9018 9955 1.526575 ATGGCAAGTTTCACGCCTGG 61.527 55.000 0.00 0.00 46.39 4.45
9054 9994 4.524053 AGATTGAATTCTGAGCTGCATGA 58.476 39.130 7.05 0.00 0.00 3.07
9106 10046 9.581289 TTTTTCATCCTTTTTACCATCTGTCTA 57.419 29.630 0.00 0.00 0.00 2.59
9118 10058 5.817296 GCTCACTTGGTTTTTCATCCTTTTT 59.183 36.000 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.