Multiple sequence alignment - TraesCS3D01G365100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G365100 chr3D 100.000 5075 0 0 1 5075 479607456 479612530 0.000000e+00 9372.0
1 TraesCS3D01G365100 chr3D 88.344 163 12 6 1929 2086 479609224 479609384 6.710000e-44 189.0
2 TraesCS3D01G365100 chr3D 88.344 163 12 6 1769 1929 479609384 479609541 6.710000e-44 189.0
3 TraesCS3D01G365100 chr3D 92.241 116 7 2 748 862 582122929 582123043 4.070000e-36 163.0
4 TraesCS3D01G365100 chr3D 91.453 117 9 1 126 242 434949615 434949500 5.260000e-35 159.0
5 TraesCS3D01G365100 chr3D 91.453 117 6 3 741 857 381640803 381640915 1.890000e-34 158.0
6 TraesCS3D01G365100 chr3B 91.153 2272 129 24 2849 5075 640058235 640060479 0.000000e+00 3016.0
7 TraesCS3D01G365100 chr3B 93.587 1840 76 20 854 2679 640056166 640057977 0.000000e+00 2706.0
8 TraesCS3D01G365100 chr3B 93.536 263 10 5 251 506 640055624 640055886 7.970000e-103 385.0
9 TraesCS3D01G365100 chr3B 89.767 215 12 2 495 706 640055839 640056046 3.010000e-67 267.0
10 TraesCS3D01G365100 chr3B 87.264 212 17 1 2850 3051 640057917 640058128 3.060000e-57 233.0
11 TraesCS3D01G365100 chr3B 95.455 132 6 0 1 132 283581315 283581446 1.430000e-50 211.0
12 TraesCS3D01G365100 chr3B 87.117 163 13 6 1769 1929 640057222 640057378 1.450000e-40 178.0
13 TraesCS3D01G365100 chr3B 91.667 120 7 1 126 242 262184776 262184895 4.070000e-36 163.0
14 TraesCS3D01G365100 chr3B 92.241 116 7 2 750 864 449159927 449159813 4.070000e-36 163.0
15 TraesCS3D01G365100 chr3B 85.816 141 9 4 2709 2849 640058053 640058182 6.850000e-29 139.0
16 TraesCS3D01G365100 chr3A 92.538 1970 104 20 3107 5058 623038185 623040129 0.000000e+00 2784.0
17 TraesCS3D01G365100 chr3A 93.818 1844 78 15 854 2679 623036206 623038031 0.000000e+00 2741.0
18 TraesCS3D01G365100 chr3A 92.720 261 7 7 251 501 623035552 623035810 2.890000e-97 366.0
19 TraesCS3D01G365100 chr3A 88.991 218 12 2 2850 3057 623037971 623038186 5.040000e-65 259.0
20 TraesCS3D01G365100 chr3A 87.037 162 16 3 1929 2086 623037115 623037275 1.450000e-40 178.0
21 TraesCS3D01G365100 chr4D 98.413 126 2 0 1 126 118575137 118575262 6.610000e-54 222.0
22 TraesCS3D01G365100 chr4D 94.595 111 4 2 126 236 205755228 205755336 2.430000e-38 171.0
23 TraesCS3D01G365100 chr7D 98.400 125 2 0 1 125 307433509 307433385 2.380000e-53 220.0
24 TraesCS3D01G365100 chr7D 94.595 111 5 1 126 236 35177467 35177576 2.430000e-38 171.0
25 TraesCS3D01G365100 chr7D 90.833 120 6 5 741 858 174803140 174803256 6.800000e-34 156.0
26 TraesCS3D01G365100 chr7D 83.333 84 8 5 2551 2633 254897205 254897127 7.050000e-09 73.1
27 TraesCS3D01G365100 chr7B 98.400 125 2 0 1 125 493504926 493505050 2.380000e-53 220.0
28 TraesCS3D01G365100 chr7B 94.643 112 5 1 126 236 374490361 374490472 6.760000e-39 172.0
29 TraesCS3D01G365100 chr6D 98.400 125 2 0 1 125 470655346 470655222 2.380000e-53 220.0
30 TraesCS3D01G365100 chr2D 98.400 125 2 0 1 125 373147943 373148067 2.380000e-53 220.0
31 TraesCS3D01G365100 chr2D 92.373 118 7 2 126 242 59629487 59629603 3.140000e-37 167.0
32 TraesCS3D01G365100 chr1D 96.947 131 2 2 1 131 18296057 18295929 8.550000e-53 219.0
33 TraesCS3D01G365100 chr1D 97.619 126 3 0 1 126 60183537 60183662 3.080000e-52 217.0
34 TraesCS3D01G365100 chr5D 97.619 126 3 0 1 126 75415280 75415155 3.080000e-52 217.0
35 TraesCS3D01G365100 chr4B 94.017 117 6 1 126 242 232497930 232497815 5.220000e-40 176.0
36 TraesCS3D01G365100 chr4B 91.667 120 5 5 750 868 662089689 662089804 1.460000e-35 161.0
37 TraesCS3D01G365100 chr2A 94.643 112 5 1 126 236 10499264 10499153 6.760000e-39 172.0
38 TraesCS3D01G365100 chr2A 93.636 110 5 2 749 857 114862717 114862825 4.070000e-36 163.0
39 TraesCS3D01G365100 chr7A 91.525 118 9 1 126 242 127914605 127914488 1.460000e-35 161.0
40 TraesCS3D01G365100 chr5A 91.525 118 7 2 740 857 350570170 350570284 5.260000e-35 159.0
41 TraesCS3D01G365100 chr5B 88.550 131 11 3 739 869 566504312 566504186 6.800000e-34 156.0
42 TraesCS3D01G365100 chr1A 88.889 126 12 2 747 871 6706852 6706976 2.450000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G365100 chr3D 479607456 479612530 5074 False 3250.000000 9372 92.229333 1 5075 3 chr3D.!!$F3 5074
1 TraesCS3D01G365100 chr3B 640055624 640060479 4855 False 989.142857 3016 89.748571 251 5075 7 chr3B.!!$F3 4824
2 TraesCS3D01G365100 chr3A 623035552 623040129 4577 False 1265.600000 2784 91.020800 251 5058 5 chr3A.!!$F1 4807

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
688 704 0.105964 CTGTTGAATCCGGGGCGATA 59.894 55.0 0.00 0.0 0.00 2.92 F
710 726 0.399949 TTGGATATCTGCCGAGGGGT 60.400 55.0 2.05 0.0 34.97 4.95 F
711 727 0.399949 TGGATATCTGCCGAGGGGTT 60.400 55.0 2.05 0.0 34.97 4.11 F
859 1059 0.549950 TCCGAACGGAGGGAGTATCT 59.450 55.0 12.04 0.0 39.76 1.98 F
2748 3016 0.247736 CTCGGTAGCCAGCAAGAAGT 59.752 55.0 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2303 2507 0.540365 AAATGGGCATGCTATCGGGG 60.540 55.000 18.92 0.00 0.00 5.73 R
2688 2945 0.952984 GTGACAGTGAAGAGGCCTGC 60.953 60.000 12.00 1.09 0.00 4.85 R
2728 2996 0.460987 CTTCTTGCTGGCTACCGAGG 60.461 60.000 0.00 0.00 0.00 4.63 R
2873 3194 0.250295 TGCAAGTTGGGAAGACCTCG 60.250 55.000 4.75 0.00 41.11 4.63 R
4617 4989 1.352352 AGCACACCTTAGCATGACCTT 59.648 47.619 0.00 0.00 0.00 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.106070 CTCTCTAGTAGAGTCTTTTTCTAGTCC 57.894 40.741 23.51 0.00 45.85 3.85
41 42 8.048514 TCTCTAGTAGAGTCTTTTTCTAGTCCC 58.951 40.741 23.51 0.00 42.83 4.46
42 43 7.931046 TCTAGTAGAGTCTTTTTCTAGTCCCT 58.069 38.462 0.00 0.00 33.84 4.20
43 44 6.844097 AGTAGAGTCTTTTTCTAGTCCCTG 57.156 41.667 0.00 0.00 0.00 4.45
44 45 6.316513 AGTAGAGTCTTTTTCTAGTCCCTGT 58.683 40.000 0.00 0.00 0.00 4.00
45 46 7.468496 AGTAGAGTCTTTTTCTAGTCCCTGTA 58.532 38.462 0.00 0.00 0.00 2.74
46 47 6.844097 AGAGTCTTTTTCTAGTCCCTGTAG 57.156 41.667 0.00 0.00 0.00 2.74
47 48 6.553857 AGAGTCTTTTTCTAGTCCCTGTAGA 58.446 40.000 0.00 0.00 0.00 2.59
48 49 7.011382 AGAGTCTTTTTCTAGTCCCTGTAGAA 58.989 38.462 0.00 0.00 35.21 2.10
49 50 7.509659 AGAGTCTTTTTCTAGTCCCTGTAGAAA 59.490 37.037 1.96 1.96 42.24 2.52
55 56 5.997384 TCTAGTCCCTGTAGAAAAAGTCC 57.003 43.478 0.00 0.00 0.00 3.85
56 57 4.776308 TCTAGTCCCTGTAGAAAAAGTCCC 59.224 45.833 0.00 0.00 0.00 4.46
57 58 3.599348 AGTCCCTGTAGAAAAAGTCCCT 58.401 45.455 0.00 0.00 0.00 4.20
58 59 3.583526 AGTCCCTGTAGAAAAAGTCCCTC 59.416 47.826 0.00 0.00 0.00 4.30
59 60 2.910977 TCCCTGTAGAAAAAGTCCCTCC 59.089 50.000 0.00 0.00 0.00 4.30
60 61 2.026169 CCCTGTAGAAAAAGTCCCTCCC 60.026 54.545 0.00 0.00 0.00 4.30
61 62 2.354805 CCTGTAGAAAAAGTCCCTCCCG 60.355 54.545 0.00 0.00 0.00 5.14
62 63 2.302157 CTGTAGAAAAAGTCCCTCCCGT 59.698 50.000 0.00 0.00 0.00 5.28
63 64 2.707257 TGTAGAAAAAGTCCCTCCCGTT 59.293 45.455 0.00 0.00 0.00 4.44
64 65 3.136992 TGTAGAAAAAGTCCCTCCCGTTT 59.863 43.478 0.00 0.00 0.00 3.60
65 66 4.347583 TGTAGAAAAAGTCCCTCCCGTTTA 59.652 41.667 0.00 0.00 0.00 2.01
66 67 4.017177 AGAAAAAGTCCCTCCCGTTTAG 57.983 45.455 0.00 0.00 0.00 1.85
67 68 3.393609 AGAAAAAGTCCCTCCCGTTTAGT 59.606 43.478 0.00 0.00 0.00 2.24
68 69 3.870538 AAAAGTCCCTCCCGTTTAGTT 57.129 42.857 0.00 0.00 0.00 2.24
69 70 3.413846 AAAGTCCCTCCCGTTTAGTTC 57.586 47.619 0.00 0.00 0.00 3.01
70 71 1.273759 AGTCCCTCCCGTTTAGTTCC 58.726 55.000 0.00 0.00 0.00 3.62
71 72 1.203275 AGTCCCTCCCGTTTAGTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
72 73 2.043526 AGTCCCTCCCGTTTAGTTCCTA 59.956 50.000 0.00 0.00 0.00 2.94
73 74 3.036819 GTCCCTCCCGTTTAGTTCCTAT 58.963 50.000 0.00 0.00 0.00 2.57
74 75 3.036091 TCCCTCCCGTTTAGTTCCTATG 58.964 50.000 0.00 0.00 0.00 2.23
75 76 2.104281 CCCTCCCGTTTAGTTCCTATGG 59.896 54.545 0.00 0.00 0.00 2.74
76 77 3.036091 CCTCCCGTTTAGTTCCTATGGA 58.964 50.000 0.00 0.00 0.00 3.41
77 78 3.181468 CCTCCCGTTTAGTTCCTATGGAC 60.181 52.174 0.00 0.00 0.00 4.02
78 79 3.705072 CTCCCGTTTAGTTCCTATGGACT 59.295 47.826 0.00 0.00 0.00 3.85
79 80 4.098894 TCCCGTTTAGTTCCTATGGACTT 58.901 43.478 0.00 0.00 0.00 3.01
80 81 4.533311 TCCCGTTTAGTTCCTATGGACTTT 59.467 41.667 0.00 0.00 0.00 2.66
81 82 5.013391 TCCCGTTTAGTTCCTATGGACTTTT 59.987 40.000 0.00 0.00 0.00 2.27
82 83 5.708697 CCCGTTTAGTTCCTATGGACTTTTT 59.291 40.000 0.00 0.00 0.00 1.94
83 84 6.128090 CCCGTTTAGTTCCTATGGACTTTTTC 60.128 42.308 0.00 0.00 0.00 2.29
84 85 6.653740 CCGTTTAGTTCCTATGGACTTTTTCT 59.346 38.462 0.00 0.00 0.00 2.52
85 86 7.820872 CCGTTTAGTTCCTATGGACTTTTTCTA 59.179 37.037 0.00 0.00 0.00 2.10
86 87 8.870879 CGTTTAGTTCCTATGGACTTTTTCTAG 58.129 37.037 0.00 0.00 0.00 2.43
87 88 9.722184 GTTTAGTTCCTATGGACTTTTTCTAGT 57.278 33.333 0.00 0.00 0.00 2.57
88 89 9.939802 TTTAGTTCCTATGGACTTTTTCTAGTC 57.060 33.333 0.00 0.00 43.05 2.59
89 90 7.800300 AGTTCCTATGGACTTTTTCTAGTCT 57.200 36.000 0.00 0.00 43.26 3.24
90 91 7.842982 AGTTCCTATGGACTTTTTCTAGTCTC 58.157 38.462 0.00 0.00 43.26 3.36
91 92 7.676468 AGTTCCTATGGACTTTTTCTAGTCTCT 59.324 37.037 0.00 0.00 43.26 3.10
92 93 7.411486 TCCTATGGACTTTTTCTAGTCTCTG 57.589 40.000 0.00 0.00 43.26 3.35
93 94 6.381420 TCCTATGGACTTTTTCTAGTCTCTGG 59.619 42.308 0.00 0.00 43.26 3.86
94 95 4.891992 TGGACTTTTTCTAGTCTCTGGG 57.108 45.455 0.00 0.00 43.26 4.45
95 96 4.489737 TGGACTTTTTCTAGTCTCTGGGA 58.510 43.478 0.00 0.00 43.26 4.37
96 97 4.283722 TGGACTTTTTCTAGTCTCTGGGAC 59.716 45.833 0.00 0.00 43.26 4.46
117 118 5.828747 GACTAAAAAGTCCCTGAACCAAAC 58.171 41.667 0.00 0.00 32.97 2.93
118 119 5.265989 ACTAAAAAGTCCCTGAACCAAACA 58.734 37.500 0.00 0.00 0.00 2.83
119 120 4.465632 AAAAAGTCCCTGAACCAAACAC 57.534 40.909 0.00 0.00 0.00 3.32
120 121 2.067365 AAGTCCCTGAACCAAACACC 57.933 50.000 0.00 0.00 0.00 4.16
121 122 0.185175 AGTCCCTGAACCAAACACCC 59.815 55.000 0.00 0.00 0.00 4.61
122 123 0.826256 GTCCCTGAACCAAACACCCC 60.826 60.000 0.00 0.00 0.00 4.95
123 124 1.533033 CCCTGAACCAAACACCCCC 60.533 63.158 0.00 0.00 0.00 5.40
124 125 1.541672 CCTGAACCAAACACCCCCT 59.458 57.895 0.00 0.00 0.00 4.79
125 126 0.774908 CCTGAACCAAACACCCCCTA 59.225 55.000 0.00 0.00 0.00 3.53
126 127 1.357761 CCTGAACCAAACACCCCCTAT 59.642 52.381 0.00 0.00 0.00 2.57
127 128 2.446435 CTGAACCAAACACCCCCTATG 58.554 52.381 0.00 0.00 0.00 2.23
128 129 1.783979 TGAACCAAACACCCCCTATGT 59.216 47.619 0.00 0.00 0.00 2.29
129 130 2.167662 GAACCAAACACCCCCTATGTG 58.832 52.381 0.00 0.00 39.63 3.21
131 132 2.350419 ACCAAACACCCCCTATGTGTA 58.650 47.619 0.00 0.00 45.78 2.90
132 133 2.307686 ACCAAACACCCCCTATGTGTAG 59.692 50.000 0.00 0.00 45.78 2.74
133 134 2.574369 CCAAACACCCCCTATGTGTAGA 59.426 50.000 0.00 0.00 45.78 2.59
134 135 3.009695 CCAAACACCCCCTATGTGTAGAA 59.990 47.826 0.00 0.00 45.78 2.10
135 136 4.325030 CCAAACACCCCCTATGTGTAGAAT 60.325 45.833 0.00 0.00 45.78 2.40
136 137 4.503714 AACACCCCCTATGTGTAGAATG 57.496 45.455 0.00 0.00 45.78 2.67
137 138 2.172717 ACACCCCCTATGTGTAGAATGC 59.827 50.000 0.00 0.00 44.73 3.56
138 139 2.439507 CACCCCCTATGTGTAGAATGCT 59.560 50.000 0.00 0.00 0.00 3.79
139 140 3.646162 CACCCCCTATGTGTAGAATGCTA 59.354 47.826 0.00 0.00 0.00 3.49
140 141 4.287067 CACCCCCTATGTGTAGAATGCTAT 59.713 45.833 0.00 0.00 0.00 2.97
141 142 4.913968 ACCCCCTATGTGTAGAATGCTATT 59.086 41.667 0.00 0.00 0.00 1.73
142 143 5.221925 ACCCCCTATGTGTAGAATGCTATTG 60.222 44.000 0.00 0.00 0.00 1.90
143 144 5.248640 CCCCTATGTGTAGAATGCTATTGG 58.751 45.833 0.00 0.00 0.00 3.16
144 145 5.221925 CCCCTATGTGTAGAATGCTATTGGT 60.222 44.000 0.00 0.00 0.00 3.67
145 146 5.934625 CCCTATGTGTAGAATGCTATTGGTC 59.065 44.000 0.00 0.00 0.00 4.02
146 147 6.239714 CCCTATGTGTAGAATGCTATTGGTCT 60.240 42.308 0.00 0.00 0.00 3.85
147 148 7.220030 CCTATGTGTAGAATGCTATTGGTCTT 58.780 38.462 0.00 0.00 0.00 3.01
148 149 6.932356 ATGTGTAGAATGCTATTGGTCTTG 57.068 37.500 0.00 0.00 0.00 3.02
149 150 6.048732 TGTGTAGAATGCTATTGGTCTTGA 57.951 37.500 0.00 0.00 0.00 3.02
150 151 6.653020 TGTGTAGAATGCTATTGGTCTTGAT 58.347 36.000 0.00 0.00 0.00 2.57
151 152 7.112122 TGTGTAGAATGCTATTGGTCTTGATT 58.888 34.615 0.00 0.00 0.00 2.57
152 153 8.264347 TGTGTAGAATGCTATTGGTCTTGATTA 58.736 33.333 0.00 0.00 0.00 1.75
153 154 8.552034 GTGTAGAATGCTATTGGTCTTGATTAC 58.448 37.037 0.00 0.00 0.00 1.89
154 155 7.715249 TGTAGAATGCTATTGGTCTTGATTACC 59.285 37.037 0.00 0.00 37.53 2.85
155 156 5.760253 AGAATGCTATTGGTCTTGATTACCG 59.240 40.000 0.00 0.00 40.08 4.02
156 157 4.481368 TGCTATTGGTCTTGATTACCGT 57.519 40.909 0.00 0.00 40.08 4.83
157 158 4.188462 TGCTATTGGTCTTGATTACCGTG 58.812 43.478 0.00 0.00 40.08 4.94
158 159 4.189231 GCTATTGGTCTTGATTACCGTGT 58.811 43.478 0.00 0.00 40.08 4.49
159 160 4.034048 GCTATTGGTCTTGATTACCGTGTG 59.966 45.833 0.00 0.00 40.08 3.82
160 161 3.755112 TTGGTCTTGATTACCGTGTGA 57.245 42.857 0.00 0.00 40.08 3.58
161 162 3.973206 TGGTCTTGATTACCGTGTGAT 57.027 42.857 0.00 0.00 40.08 3.06
162 163 3.595173 TGGTCTTGATTACCGTGTGATG 58.405 45.455 0.00 0.00 40.08 3.07
163 164 3.259625 TGGTCTTGATTACCGTGTGATGA 59.740 43.478 0.00 0.00 40.08 2.92
164 165 3.865745 GGTCTTGATTACCGTGTGATGAG 59.134 47.826 0.00 0.00 0.00 2.90
165 166 4.381612 GGTCTTGATTACCGTGTGATGAGA 60.382 45.833 0.00 0.00 0.00 3.27
166 167 4.800993 GTCTTGATTACCGTGTGATGAGAG 59.199 45.833 0.00 0.00 0.00 3.20
167 168 4.705023 TCTTGATTACCGTGTGATGAGAGA 59.295 41.667 0.00 0.00 0.00 3.10
168 169 4.639135 TGATTACCGTGTGATGAGAGAG 57.361 45.455 0.00 0.00 0.00 3.20
169 170 4.270008 TGATTACCGTGTGATGAGAGAGA 58.730 43.478 0.00 0.00 0.00 3.10
170 171 4.705023 TGATTACCGTGTGATGAGAGAGAA 59.295 41.667 0.00 0.00 0.00 2.87
171 172 4.703645 TTACCGTGTGATGAGAGAGAAG 57.296 45.455 0.00 0.00 0.00 2.85
172 173 1.203523 ACCGTGTGATGAGAGAGAAGC 59.796 52.381 0.00 0.00 0.00 3.86
173 174 1.203287 CCGTGTGATGAGAGAGAAGCA 59.797 52.381 0.00 0.00 0.00 3.91
174 175 2.353109 CCGTGTGATGAGAGAGAAGCAA 60.353 50.000 0.00 0.00 0.00 3.91
175 176 3.519579 CGTGTGATGAGAGAGAAGCAAT 58.480 45.455 0.00 0.00 0.00 3.56
176 177 3.931468 CGTGTGATGAGAGAGAAGCAATT 59.069 43.478 0.00 0.00 0.00 2.32
177 178 4.391216 CGTGTGATGAGAGAGAAGCAATTT 59.609 41.667 0.00 0.00 0.00 1.82
178 179 5.106791 CGTGTGATGAGAGAGAAGCAATTTT 60.107 40.000 0.00 0.00 0.00 1.82
179 180 6.567321 CGTGTGATGAGAGAGAAGCAATTTTT 60.567 38.462 0.00 0.00 0.00 1.94
201 202 7.531857 TTTTCTACTTTAATGTGCATTGGGA 57.468 32.000 7.60 0.00 32.50 4.37
202 203 7.531857 TTTCTACTTTAATGTGCATTGGGAA 57.468 32.000 7.60 0.52 32.50 3.97
203 204 6.757897 TCTACTTTAATGTGCATTGGGAAG 57.242 37.500 7.60 10.29 32.50 3.46
204 205 6.480763 TCTACTTTAATGTGCATTGGGAAGA 58.519 36.000 16.65 8.41 32.50 2.87
205 206 7.118723 TCTACTTTAATGTGCATTGGGAAGAT 58.881 34.615 16.65 9.01 32.50 2.40
206 207 8.271458 TCTACTTTAATGTGCATTGGGAAGATA 58.729 33.333 16.65 9.39 32.50 1.98
207 208 7.338800 ACTTTAATGTGCATTGGGAAGATAG 57.661 36.000 16.65 3.53 32.50 2.08
208 209 7.118723 ACTTTAATGTGCATTGGGAAGATAGA 58.881 34.615 16.65 0.00 32.50 1.98
209 210 7.781693 ACTTTAATGTGCATTGGGAAGATAGAT 59.218 33.333 16.65 1.57 32.50 1.98
210 211 7.514784 TTAATGTGCATTGGGAAGATAGATG 57.485 36.000 7.60 0.00 32.50 2.90
211 212 4.508551 TGTGCATTGGGAAGATAGATGT 57.491 40.909 0.00 0.00 0.00 3.06
212 213 5.628797 TGTGCATTGGGAAGATAGATGTA 57.371 39.130 0.00 0.00 0.00 2.29
213 214 5.368145 TGTGCATTGGGAAGATAGATGTAC 58.632 41.667 0.00 0.00 35.02 2.90
214 215 5.104569 TGTGCATTGGGAAGATAGATGTACA 60.105 40.000 0.00 0.00 39.72 2.90
215 216 6.000219 GTGCATTGGGAAGATAGATGTACAT 59.000 40.000 8.43 8.43 34.72 2.29
216 217 6.488006 GTGCATTGGGAAGATAGATGTACATT 59.512 38.462 10.30 3.01 34.72 2.71
217 218 7.013655 GTGCATTGGGAAGATAGATGTACATTT 59.986 37.037 10.30 6.99 34.72 2.32
218 219 7.560991 TGCATTGGGAAGATAGATGTACATTTT 59.439 33.333 10.30 4.51 0.00 1.82
219 220 8.416329 GCATTGGGAAGATAGATGTACATTTTT 58.584 33.333 10.30 0.00 0.00 1.94
245 246 8.792830 TTATGGACAAATTTTAGAGTCAGAGG 57.207 34.615 8.22 0.00 32.79 3.69
246 247 5.560724 TGGACAAATTTTAGAGTCAGAGGG 58.439 41.667 8.22 0.00 32.79 4.30
247 248 4.944317 GGACAAATTTTAGAGTCAGAGGGG 59.056 45.833 8.22 0.00 32.79 4.79
248 249 5.280521 GGACAAATTTTAGAGTCAGAGGGGA 60.281 44.000 8.22 0.00 32.79 4.81
249 250 5.810095 ACAAATTTTAGAGTCAGAGGGGAG 58.190 41.667 0.00 0.00 0.00 4.30
250 251 5.310857 ACAAATTTTAGAGTCAGAGGGGAGT 59.689 40.000 0.00 0.00 0.00 3.85
251 252 6.500751 ACAAATTTTAGAGTCAGAGGGGAGTA 59.499 38.462 0.00 0.00 0.00 2.59
252 253 6.547930 AATTTTAGAGTCAGAGGGGAGTAC 57.452 41.667 0.00 0.00 0.00 2.73
253 254 4.949966 TTTAGAGTCAGAGGGGAGTACT 57.050 45.455 0.00 0.00 0.00 2.73
254 255 2.818751 AGAGTCAGAGGGGAGTACTG 57.181 55.000 0.00 0.00 0.00 2.74
255 256 1.997040 AGAGTCAGAGGGGAGTACTGT 59.003 52.381 0.00 0.00 33.93 3.55
295 296 1.344226 CGCGAATGCAGACGAGAACA 61.344 55.000 17.23 0.00 42.97 3.18
297 298 1.394917 GCGAATGCAGACGAGAACAAT 59.605 47.619 17.23 0.00 42.15 2.71
298 299 2.785681 GCGAATGCAGACGAGAACAATG 60.786 50.000 17.23 0.00 42.15 2.82
300 301 3.304041 TGCAGACGAGAACAATGCA 57.696 47.368 0.00 0.00 44.10 3.96
391 399 4.102054 GTGGAAAATCCCTAACCCGATCTA 59.898 45.833 0.00 0.00 35.03 1.98
459 470 2.548875 CGCTCCTCTCCATCTTTCTTG 58.451 52.381 0.00 0.00 0.00 3.02
486 499 4.785453 GAGGCCAGAAGCACCGGG 62.785 72.222 6.32 0.00 46.50 5.73
578 594 4.598894 CGCTGCTGGGATCGGAGG 62.599 72.222 1.02 0.00 0.00 4.30
611 627 1.670083 CGTTCCCCACCGTTTCTCC 60.670 63.158 0.00 0.00 0.00 3.71
612 628 1.303074 GTTCCCCACCGTTTCTCCC 60.303 63.158 0.00 0.00 0.00 4.30
613 629 1.462627 TTCCCCACCGTTTCTCCCT 60.463 57.895 0.00 0.00 0.00 4.20
614 630 0.178897 TTCCCCACCGTTTCTCCCTA 60.179 55.000 0.00 0.00 0.00 3.53
615 631 0.616679 TCCCCACCGTTTCTCCCTAG 60.617 60.000 0.00 0.00 0.00 3.02
616 632 1.623542 CCCCACCGTTTCTCCCTAGG 61.624 65.000 0.06 0.06 0.00 3.02
617 633 0.616679 CCCACCGTTTCTCCCTAGGA 60.617 60.000 11.48 0.00 0.00 2.94
654 670 5.279206 CCTGTTCAGATCGCTACATAGGATT 60.279 44.000 1.00 0.00 0.00 3.01
688 704 0.105964 CTGTTGAATCCGGGGCGATA 59.894 55.000 0.00 0.00 0.00 2.92
689 705 0.542333 TGTTGAATCCGGGGCGATAA 59.458 50.000 0.00 0.00 0.00 1.75
692 708 2.621526 GTTGAATCCGGGGCGATAAATT 59.378 45.455 0.00 0.00 0.00 1.82
699 715 2.943033 CCGGGGCGATAAATTGGATATC 59.057 50.000 0.00 0.00 0.00 1.63
701 717 3.623060 CGGGGCGATAAATTGGATATCTG 59.377 47.826 2.05 0.00 0.00 2.90
706 722 4.033358 GCGATAAATTGGATATCTGCCGAG 59.967 45.833 2.05 0.00 0.00 4.63
708 724 2.867109 AATTGGATATCTGCCGAGGG 57.133 50.000 2.05 0.00 0.00 4.30
710 726 0.399949 TTGGATATCTGCCGAGGGGT 60.400 55.000 2.05 0.00 34.97 4.95
711 727 0.399949 TGGATATCTGCCGAGGGGTT 60.400 55.000 2.05 0.00 34.97 4.11
725 821 1.736491 GGGGTTGGGGAGGGTTTCTT 61.736 60.000 0.00 0.00 0.00 2.52
750 950 9.938280 TTGATTGCAACTAATTAGTACAGTACT 57.062 29.630 18.31 17.51 42.68 2.73
753 953 9.813446 ATTGCAACTAATTAGTACAGTACTACC 57.187 33.333 18.53 3.14 40.74 3.18
754 954 7.775120 TGCAACTAATTAGTACAGTACTACCC 58.225 38.462 18.53 3.98 40.74 3.69
755 955 7.147846 TGCAACTAATTAGTACAGTACTACCCC 60.148 40.741 18.53 4.41 40.74 4.95
756 956 7.069208 GCAACTAATTAGTACAGTACTACCCCT 59.931 40.741 18.53 7.39 40.74 4.79
758 958 8.759481 ACTAATTAGTACAGTACTACCCCTTC 57.241 38.462 18.53 0.00 40.74 3.46
759 959 8.339247 ACTAATTAGTACAGTACTACCCCTTCA 58.661 37.037 18.53 4.51 40.74 3.02
760 960 9.364653 CTAATTAGTACAGTACTACCCCTTCAT 57.635 37.037 18.53 6.50 40.74 2.57
761 961 8.619683 AATTAGTACAGTACTACCCCTTCATT 57.380 34.615 18.53 11.44 40.74 2.57
762 962 7.651027 TTAGTACAGTACTACCCCTTCATTC 57.349 40.000 18.53 0.00 40.74 2.67
763 963 4.643784 AGTACAGTACTACCCCTTCATTCG 59.356 45.833 11.84 0.00 37.23 3.34
764 964 2.764572 ACAGTACTACCCCTTCATTCGG 59.235 50.000 0.00 0.00 0.00 4.30
765 965 3.028850 CAGTACTACCCCTTCATTCGGA 58.971 50.000 0.00 0.00 0.00 4.55
766 966 3.449737 CAGTACTACCCCTTCATTCGGAA 59.550 47.826 0.00 0.00 0.00 4.30
767 967 4.101119 CAGTACTACCCCTTCATTCGGAAT 59.899 45.833 0.00 0.00 34.32 3.01
768 968 4.720273 AGTACTACCCCTTCATTCGGAATT 59.280 41.667 0.00 0.00 34.32 2.17
769 969 5.901276 AGTACTACCCCTTCATTCGGAATTA 59.099 40.000 0.00 0.00 34.32 1.40
770 970 5.032327 ACTACCCCTTCATTCGGAATTAC 57.968 43.478 0.00 0.00 34.32 1.89
771 971 4.720273 ACTACCCCTTCATTCGGAATTACT 59.280 41.667 0.00 0.00 34.32 2.24
772 972 4.586306 ACCCCTTCATTCGGAATTACTT 57.414 40.909 0.00 0.00 34.32 2.24
773 973 4.270008 ACCCCTTCATTCGGAATTACTTG 58.730 43.478 0.00 0.00 34.32 3.16
774 974 4.263771 ACCCCTTCATTCGGAATTACTTGT 60.264 41.667 0.00 0.00 34.32 3.16
775 975 4.335594 CCCCTTCATTCGGAATTACTTGTC 59.664 45.833 0.00 0.00 34.32 3.18
776 976 4.034048 CCCTTCATTCGGAATTACTTGTCG 59.966 45.833 0.00 0.00 34.32 4.35
777 977 4.494199 CCTTCATTCGGAATTACTTGTCGC 60.494 45.833 0.00 0.00 34.32 5.19
778 978 3.591023 TCATTCGGAATTACTTGTCGCA 58.409 40.909 0.00 0.00 0.00 5.10
779 979 3.369756 TCATTCGGAATTACTTGTCGCAC 59.630 43.478 0.00 0.00 0.00 5.34
780 980 2.442212 TCGGAATTACTTGTCGCACA 57.558 45.000 0.00 0.00 0.00 4.57
781 981 2.756829 TCGGAATTACTTGTCGCACAA 58.243 42.857 2.49 2.49 36.54 3.33
782 982 3.132160 TCGGAATTACTTGTCGCACAAA 58.868 40.909 3.84 0.00 37.69 2.83
783 983 3.749088 TCGGAATTACTTGTCGCACAAAT 59.251 39.130 3.84 0.00 37.69 2.32
784 984 3.845775 CGGAATTACTTGTCGCACAAATG 59.154 43.478 3.84 0.00 37.69 2.32
785 985 4.377943 CGGAATTACTTGTCGCACAAATGA 60.378 41.667 3.84 0.00 37.69 2.57
786 986 5.457140 GGAATTACTTGTCGCACAAATGAA 58.543 37.500 3.84 0.33 37.69 2.57
787 987 6.092748 GGAATTACTTGTCGCACAAATGAAT 58.907 36.000 3.84 2.11 37.69 2.57
788 988 6.033831 GGAATTACTTGTCGCACAAATGAATG 59.966 38.462 3.84 0.00 37.69 2.67
789 989 3.988379 ACTTGTCGCACAAATGAATGT 57.012 38.095 3.84 0.00 37.69 2.71
790 990 6.546972 TTACTTGTCGCACAAATGAATGTA 57.453 33.333 3.84 0.29 37.69 2.29
791 991 5.627499 ACTTGTCGCACAAATGAATGTAT 57.373 34.783 3.84 0.00 37.69 2.29
792 992 5.631026 ACTTGTCGCACAAATGAATGTATC 58.369 37.500 3.84 0.00 37.69 2.24
793 993 5.412594 ACTTGTCGCACAAATGAATGTATCT 59.587 36.000 3.84 0.00 37.69 1.98
794 994 6.593770 ACTTGTCGCACAAATGAATGTATCTA 59.406 34.615 3.84 0.00 37.69 1.98
795 995 6.588348 TGTCGCACAAATGAATGTATCTAG 57.412 37.500 0.00 0.00 30.84 2.43
796 996 6.337356 TGTCGCACAAATGAATGTATCTAGA 58.663 36.000 0.00 0.00 30.84 2.43
797 997 6.255670 TGTCGCACAAATGAATGTATCTAGAC 59.744 38.462 0.00 0.00 30.84 2.59
798 998 5.458779 TCGCACAAATGAATGTATCTAGACG 59.541 40.000 0.00 0.00 30.84 4.18
799 999 5.232202 CGCACAAATGAATGTATCTAGACGT 59.768 40.000 0.00 0.00 30.84 4.34
800 1000 6.416750 CGCACAAATGAATGTATCTAGACGTA 59.583 38.462 0.00 0.00 30.84 3.57
801 1001 7.114953 CGCACAAATGAATGTATCTAGACGTAT 59.885 37.037 0.00 0.00 30.84 3.06
802 1002 8.765219 GCACAAATGAATGTATCTAGACGTATT 58.235 33.333 0.00 0.00 30.84 1.89
817 1017 9.117183 TCTAGACGTATTTTAGTTCTAGATGCA 57.883 33.333 0.00 0.00 32.48 3.96
818 1018 9.900710 CTAGACGTATTTTAGTTCTAGATGCAT 57.099 33.333 0.00 0.00 0.00 3.96
819 1019 8.804688 AGACGTATTTTAGTTCTAGATGCATC 57.195 34.615 19.37 19.37 0.00 3.91
820 1020 7.868415 AGACGTATTTTAGTTCTAGATGCATCC 59.132 37.037 23.06 7.42 0.00 3.51
821 1021 7.497595 ACGTATTTTAGTTCTAGATGCATCCA 58.502 34.615 23.06 9.05 0.00 3.41
822 1022 8.150945 ACGTATTTTAGTTCTAGATGCATCCAT 58.849 33.333 23.06 8.39 0.00 3.41
823 1023 8.993121 CGTATTTTAGTTCTAGATGCATCCATT 58.007 33.333 23.06 7.62 0.00 3.16
827 1027 5.998454 AGTTCTAGATGCATCCATTTTCG 57.002 39.130 23.06 0.68 0.00 3.46
828 1028 5.674525 AGTTCTAGATGCATCCATTTTCGA 58.325 37.500 23.06 3.18 0.00 3.71
829 1029 5.757320 AGTTCTAGATGCATCCATTTTCGAG 59.243 40.000 23.06 4.11 0.00 4.04
830 1030 5.535753 TCTAGATGCATCCATTTTCGAGA 57.464 39.130 23.06 6.52 0.00 4.04
831 1031 5.292765 TCTAGATGCATCCATTTTCGAGAC 58.707 41.667 23.06 0.00 0.00 3.36
832 1032 3.877559 AGATGCATCCATTTTCGAGACA 58.122 40.909 23.06 0.00 0.00 3.41
833 1033 4.264253 AGATGCATCCATTTTCGAGACAA 58.736 39.130 23.06 0.00 0.00 3.18
834 1034 4.334759 AGATGCATCCATTTTCGAGACAAG 59.665 41.667 23.06 0.00 0.00 3.16
835 1035 3.411446 TGCATCCATTTTCGAGACAAGT 58.589 40.909 0.00 0.00 0.00 3.16
836 1036 4.574892 TGCATCCATTTTCGAGACAAGTA 58.425 39.130 0.00 0.00 0.00 2.24
837 1037 5.000591 TGCATCCATTTTCGAGACAAGTAA 58.999 37.500 0.00 0.00 0.00 2.24
838 1038 5.471797 TGCATCCATTTTCGAGACAAGTAAA 59.528 36.000 0.00 0.00 0.00 2.01
839 1039 6.016693 TGCATCCATTTTCGAGACAAGTAAAA 60.017 34.615 0.00 0.00 0.00 1.52
840 1040 7.029563 GCATCCATTTTCGAGACAAGTAAAAT 58.970 34.615 0.00 0.00 33.07 1.82
841 1041 7.218963 GCATCCATTTTCGAGACAAGTAAAATC 59.781 37.037 0.00 0.00 31.05 2.17
842 1042 7.141100 TCCATTTTCGAGACAAGTAAAATCC 57.859 36.000 0.00 0.00 31.05 3.01
843 1043 6.021596 CCATTTTCGAGACAAGTAAAATCCG 58.978 40.000 0.00 0.00 31.05 4.18
844 1044 6.128391 CCATTTTCGAGACAAGTAAAATCCGA 60.128 38.462 0.00 0.00 31.05 4.55
845 1045 6.847956 TTTTCGAGACAAGTAAAATCCGAA 57.152 33.333 0.00 0.00 33.76 4.30
846 1046 5.834239 TTCGAGACAAGTAAAATCCGAAC 57.166 39.130 0.00 0.00 31.17 3.95
847 1047 3.916172 TCGAGACAAGTAAAATCCGAACG 59.084 43.478 0.00 0.00 0.00 3.95
848 1048 3.060363 CGAGACAAGTAAAATCCGAACGG 59.940 47.826 6.94 6.94 0.00 4.44
858 1058 3.106738 TCCGAACGGAGGGAGTATC 57.893 57.895 12.04 0.00 39.76 2.24
859 1059 0.549950 TCCGAACGGAGGGAGTATCT 59.450 55.000 12.04 0.00 39.76 1.98
860 1060 0.953003 CCGAACGGAGGGAGTATCTC 59.047 60.000 7.53 0.00 37.50 2.75
883 1083 5.234757 TCTTTGTGTGCAGCAATTTGATTTC 59.765 36.000 0.00 0.00 0.00 2.17
961 1161 4.495472 CCGATTCACGTTTGTTGATATTGC 59.505 41.667 0.00 0.00 40.78 3.56
990 1193 1.843851 TGTCAGGGTTCAGTTGAAGGT 59.156 47.619 0.00 0.00 34.27 3.50
997 1200 2.098443 GGTTCAGTTGAAGGTTTGCGAA 59.902 45.455 0.00 0.00 34.27 4.70
1038 1241 1.372087 GGCTGATTGGACTGAAGGCG 61.372 60.000 0.00 0.00 0.00 5.52
1051 1254 4.749310 AGGCGGCTGTCTTGCTCG 62.749 66.667 12.25 0.00 0.00 5.03
1095 1298 0.674581 TGGGCATGAAAGTGCTCTCG 60.675 55.000 0.00 0.00 45.87 4.04
1173 1376 2.342648 GTCGACCTCCCGTTGCTT 59.657 61.111 3.51 0.00 0.00 3.91
1383 1586 1.012998 CGCAGTCATCGATTGCACG 60.013 57.895 18.03 5.93 43.81 5.34
1482 1685 1.073964 CACCACAGATTGAGTCAGCG 58.926 55.000 0.00 0.00 0.00 5.18
1846 2050 9.982651 GTTAAACTGCCTCTCATACATTATAGA 57.017 33.333 0.00 0.00 0.00 1.98
2110 2314 6.397831 TGCGCATACATAACGAATATTACC 57.602 37.500 5.66 0.00 0.00 2.85
2147 2351 4.713814 TGTCATCTATTGTCTCAAGAGCCT 59.286 41.667 0.09 0.00 0.00 4.58
2225 2429 6.619660 GCGGCCAATTAATTTGTTTGTTTAGG 60.620 38.462 2.24 0.00 33.15 2.69
2303 2507 4.932200 AGTTGTGTGTATTGAGCTCTTAGC 59.068 41.667 16.19 3.77 42.84 3.09
2307 2511 1.412710 TGTATTGAGCTCTTAGCCCCG 59.587 52.381 16.19 0.00 43.77 5.73
2335 2539 4.518278 TGCCCATTTGAATAAGCCTAGA 57.482 40.909 0.00 0.00 0.00 2.43
2469 2679 2.288825 CGCATACAGGGACACGGAATAT 60.289 50.000 0.00 0.00 0.00 1.28
2471 2681 3.244078 GCATACAGGGACACGGAATATGA 60.244 47.826 0.00 0.00 0.00 2.15
2472 2682 4.742440 GCATACAGGGACACGGAATATGAA 60.742 45.833 0.00 0.00 0.00 2.57
2513 2723 4.737855 ATGGGGATACAGCGTGTATATC 57.262 45.455 9.61 6.56 43.08 1.63
2688 2945 9.896645 AAATACACCATATGCTATCTGGAATAG 57.103 33.333 0.00 0.00 34.08 1.73
2728 2996 2.203451 CTGCCCCCAGATGCCATC 60.203 66.667 0.00 0.00 41.77 3.51
2748 3016 0.247736 CTCGGTAGCCAGCAAGAAGT 59.752 55.000 0.00 0.00 0.00 3.01
2757 3025 0.590195 CAGCAAGAAGTCAGCACCAC 59.410 55.000 0.00 0.00 0.00 4.16
2798 3066 4.410743 GCAGGCAAGAACGGCAGC 62.411 66.667 0.00 0.00 36.83 5.25
2799 3067 4.093952 CAGGCAAGAACGGCAGCG 62.094 66.667 0.00 0.00 0.00 5.18
2802 3070 4.389576 GCAAGAACGGCAGCGGTG 62.390 66.667 10.98 10.98 0.00 4.94
2803 3071 3.726517 CAAGAACGGCAGCGGTGG 61.727 66.667 17.54 2.78 0.00 4.61
2873 3194 6.346919 CGAATGATCGTCAATTTCCTCATACC 60.347 42.308 0.00 0.00 44.06 2.73
2905 3226 5.047660 TCCCAACTTGCAAAATACACCATAC 60.048 40.000 0.00 0.00 0.00 2.39
2910 3231 5.413213 ACTTGCAAAATACACCATACGCTAA 59.587 36.000 0.00 0.00 0.00 3.09
2916 3237 9.755064 GCAAAATACACCATACGCTAATATTAG 57.245 33.333 16.79 16.79 0.00 1.73
3014 3345 0.463474 GCTCCCTAGCCAGCAAGAAG 60.463 60.000 6.33 0.00 43.40 2.85
3076 3409 1.871772 CAGGCAAGAACGGCAAGAG 59.128 57.895 0.00 0.00 0.00 2.85
3081 3414 1.846124 AAGAACGGCAAGAGGGGGA 60.846 57.895 0.00 0.00 0.00 4.81
3086 3419 2.602676 CGGCAAGAGGGGGAAAGGA 61.603 63.158 0.00 0.00 0.00 3.36
3087 3420 1.304617 GGCAAGAGGGGGAAAGGAG 59.695 63.158 0.00 0.00 0.00 3.69
3098 3431 1.491668 GGAAAGGAGAGAGGGGAGAC 58.508 60.000 0.00 0.00 0.00 3.36
3121 3459 2.270850 GCCGTGCCCATACCTTGA 59.729 61.111 0.00 0.00 0.00 3.02
3138 3476 3.345414 CTTGATGCTGAGAGGAAAGCTT 58.655 45.455 0.00 0.00 40.21 3.74
3162 3501 2.114616 GGAGATCCACATGTCAGAGGT 58.885 52.381 0.00 0.00 35.64 3.85
3163 3502 3.300388 GGAGATCCACATGTCAGAGGTA 58.700 50.000 0.00 0.00 35.64 3.08
3166 3505 1.182667 TCCACATGTCAGAGGTACCG 58.817 55.000 6.18 0.00 0.00 4.02
3167 3506 0.175760 CCACATGTCAGAGGTACCGG 59.824 60.000 6.18 0.00 0.00 5.28
3168 3507 0.895530 CACATGTCAGAGGTACCGGT 59.104 55.000 13.98 13.98 0.00 5.28
3169 3508 0.895530 ACATGTCAGAGGTACCGGTG 59.104 55.000 19.93 8.23 0.00 4.94
3170 3509 0.175760 CATGTCAGAGGTACCGGTGG 59.824 60.000 19.93 0.00 0.00 4.61
3171 3510 0.252103 ATGTCAGAGGTACCGGTGGT 60.252 55.000 19.93 0.00 40.16 4.16
3196 3541 0.687354 AGTCGCAGGAATGTGGACTT 59.313 50.000 0.00 0.00 0.00 3.01
3214 3559 2.630580 ACTTGAGTGGAGAACAGGAGAC 59.369 50.000 0.00 0.00 0.00 3.36
3218 3563 1.609501 TGGAGAACAGGAGACGGGG 60.610 63.158 0.00 0.00 0.00 5.73
3278 3623 1.911766 GGACCTTCTCGTGTCCCCA 60.912 63.158 0.00 0.00 44.32 4.96
3280 3625 1.152312 ACCTTCTCGTGTCCCCAGT 60.152 57.895 0.00 0.00 0.00 4.00
3301 3646 4.076394 GTGTATCCCAGTTGTTTAAGCCA 58.924 43.478 0.00 0.00 0.00 4.75
3305 3650 3.571590 TCCCAGTTGTTTAAGCCATGTT 58.428 40.909 0.00 0.00 0.00 2.71
3348 3693 9.829507 TTTTTAATCGGAAATTACGGGATACTA 57.170 29.630 0.00 0.00 0.00 1.82
3359 3704 3.093814 ACGGGATACTACATGACACACA 58.906 45.455 0.00 0.00 0.00 3.72
3415 3767 3.263425 ACGGGGATACAGTGACTTTTGAT 59.737 43.478 0.00 0.00 39.74 2.57
3579 3932 4.096833 GTCATATGATGCTTGCCTTTGTCA 59.903 41.667 9.02 0.00 0.00 3.58
3650 4004 3.562505 CATCAGTCAAGCAAAAGAGCAC 58.437 45.455 0.00 0.00 36.85 4.40
3664 4018 0.391793 GAGCACCAGTGAAGTAGCCC 60.392 60.000 0.99 0.00 0.00 5.19
3723 4077 5.240183 CCAAACAGCCTAATCCATGTGATAG 59.760 44.000 0.00 0.00 31.83 2.08
3799 4153 2.519013 AGTTTCCTTTCCTGGTGCATC 58.481 47.619 0.00 0.00 0.00 3.91
3990 4352 6.385033 CAAAAGCTTAGAGGAATGGTCAAAG 58.615 40.000 0.00 0.00 0.00 2.77
4136 4498 4.761739 TGAGAAGACTTAATGCTTTGGTGG 59.238 41.667 0.00 0.00 0.00 4.61
4248 4610 1.613437 ACTGTGGCTTACAATGTTGCC 59.387 47.619 18.57 18.57 45.10 4.52
4379 4741 6.604735 AGATTGTCATTTATAACGGAGTGC 57.395 37.500 0.00 0.00 45.00 4.40
4409 4773 3.270027 TCTCATCCGTACCTTGCATTTG 58.730 45.455 0.00 0.00 0.00 2.32
4607 4979 5.468746 TGCTGAAGTGTACTCATTTTGGTAC 59.531 40.000 0.00 0.00 38.82 3.34
4622 4994 9.010029 TCATTTTGGTACTCTTTGATTAAGGTC 57.990 33.333 0.00 0.00 34.46 3.85
4628 5000 7.093068 TGGTACTCTTTGATTAAGGTCATGCTA 60.093 37.037 0.00 0.00 34.46 3.49
4630 5002 7.856145 ACTCTTTGATTAAGGTCATGCTAAG 57.144 36.000 0.00 0.00 34.46 2.18
4694 5066 9.581289 TTTTTCATCCTTTTTACCATCTGTCTA 57.419 29.630 0.00 0.00 0.00 2.59
4746 5118 4.524053 AGATTGAATTCTGAGCTGCATGA 58.476 39.130 7.05 0.00 0.00 3.07
4782 5157 1.526575 ATGGCAAGTTTCACGCCTGG 61.527 55.000 0.00 0.00 46.39 4.45
4787 5162 2.051345 GTTTCACGCCTGGCAACG 60.051 61.111 20.29 4.90 42.51 4.10
4798 5173 2.358984 GGCAACGGTTCCGGCTAA 60.359 61.111 15.66 0.00 0.00 3.09
4860 5235 3.072184 GGTCTGGTATTGATGGAGCATCT 59.928 47.826 0.00 0.00 41.06 2.90
4873 5248 3.008375 TGGAGCATCTACAGAGCTGTTTT 59.992 43.478 8.60 0.00 44.42 2.43
4874 5249 3.620821 GGAGCATCTACAGAGCTGTTTTC 59.379 47.826 8.60 0.00 44.42 2.29
4880 5255 6.515696 GCATCTACAGAGCTGTTTTCCTTTTT 60.516 38.462 8.60 0.00 41.83 1.94
4911 5286 3.685139 TCAGGTGTGAACTTCCATCTC 57.315 47.619 0.00 0.00 0.00 2.75
4985 5360 4.908736 TGCTTAACATCGCTCTTAAATGC 58.091 39.130 0.00 0.00 0.00 3.56
5017 5392 6.819284 TCTTTCATGGTTTCTTTTGCTCAAT 58.181 32.000 0.00 0.00 0.00 2.57
5020 5395 8.592105 TTTCATGGTTTCTTTTGCTCAATAAG 57.408 30.769 0.00 0.00 0.00 1.73
5024 5399 5.298276 TGGTTTCTTTTGCTCAATAAGTCGT 59.702 36.000 0.00 0.00 0.00 4.34
5027 5402 5.356882 TCTTTTGCTCAATAAGTCGTTGG 57.643 39.130 0.00 0.00 0.00 3.77
5038 5413 6.203338 TCAATAAGTCGTTGGTTGTTTCTACC 59.797 38.462 0.00 0.00 36.17 3.18
5039 5414 3.832615 AGTCGTTGGTTGTTTCTACCT 57.167 42.857 0.00 0.00 36.60 3.08
5062 5438 2.146342 CTGCGACTTGTCCTGTCATTT 58.854 47.619 0.00 0.00 34.37 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.048514 GGGACTAGAAAAAGACTCTACTAGAGA 58.951 40.741 18.41 0.00 45.07 3.10
16 17 8.050930 AGGGACTAGAAAAAGACTCTACTAGAG 58.949 40.741 11.06 11.06 42.94 2.43
17 18 7.830201 CAGGGACTAGAAAAAGACTCTACTAGA 59.170 40.741 0.00 0.00 36.02 2.43
18 19 7.612633 ACAGGGACTAGAAAAAGACTCTACTAG 59.387 40.741 0.00 0.00 36.02 2.57
19 20 7.468496 ACAGGGACTAGAAAAAGACTCTACTA 58.532 38.462 0.00 0.00 36.02 1.82
20 21 6.316513 ACAGGGACTAGAAAAAGACTCTACT 58.683 40.000 0.00 0.00 36.02 2.57
21 22 6.593268 ACAGGGACTAGAAAAAGACTCTAC 57.407 41.667 0.00 0.00 36.02 2.59
22 23 7.696981 TCTACAGGGACTAGAAAAAGACTCTA 58.303 38.462 0.00 0.00 36.02 2.43
23 24 6.553857 TCTACAGGGACTAGAAAAAGACTCT 58.446 40.000 0.00 0.00 36.02 3.24
24 25 6.837471 TCTACAGGGACTAGAAAAAGACTC 57.163 41.667 0.00 0.00 36.02 3.36
25 26 7.613551 TTTCTACAGGGACTAGAAAAAGACT 57.386 36.000 0.00 0.00 37.31 3.24
26 27 8.672823 TTTTTCTACAGGGACTAGAAAAAGAC 57.327 34.615 16.61 0.00 46.05 3.01
30 31 7.222161 GGACTTTTTCTACAGGGACTAGAAAA 58.778 38.462 0.00 8.58 43.60 2.29
31 32 6.239800 GGGACTTTTTCTACAGGGACTAGAAA 60.240 42.308 0.00 0.00 38.08 2.52
32 33 5.247792 GGGACTTTTTCTACAGGGACTAGAA 59.752 44.000 0.00 0.00 36.02 2.10
33 34 4.776308 GGGACTTTTTCTACAGGGACTAGA 59.224 45.833 0.00 0.00 36.02 2.43
34 35 4.778427 AGGGACTTTTTCTACAGGGACTAG 59.222 45.833 0.00 0.00 28.08 2.57
35 36 4.759953 AGGGACTTTTTCTACAGGGACTA 58.240 43.478 0.00 0.00 28.08 2.59
36 37 3.583526 GAGGGACTTTTTCTACAGGGACT 59.416 47.826 0.00 0.00 41.55 3.85
37 38 3.307550 GGAGGGACTTTTTCTACAGGGAC 60.308 52.174 0.00 0.00 41.55 4.46
38 39 2.910977 GGAGGGACTTTTTCTACAGGGA 59.089 50.000 0.00 0.00 41.55 4.20
39 40 2.026169 GGGAGGGACTTTTTCTACAGGG 60.026 54.545 0.00 0.00 41.55 4.45
40 41 2.354805 CGGGAGGGACTTTTTCTACAGG 60.355 54.545 0.00 0.00 41.55 4.00
41 42 2.302157 ACGGGAGGGACTTTTTCTACAG 59.698 50.000 0.00 0.00 41.55 2.74
42 43 2.332117 ACGGGAGGGACTTTTTCTACA 58.668 47.619 0.00 0.00 41.55 2.74
43 44 3.413846 AACGGGAGGGACTTTTTCTAC 57.586 47.619 0.00 0.00 41.55 2.59
44 45 4.594491 ACTAAACGGGAGGGACTTTTTCTA 59.406 41.667 0.00 0.00 41.55 2.10
45 46 3.393609 ACTAAACGGGAGGGACTTTTTCT 59.606 43.478 0.00 0.00 41.55 2.52
46 47 3.748083 ACTAAACGGGAGGGACTTTTTC 58.252 45.455 0.00 0.00 41.55 2.29
47 48 3.870538 ACTAAACGGGAGGGACTTTTT 57.129 42.857 0.00 0.00 41.55 1.94
48 49 3.497405 GGAACTAAACGGGAGGGACTTTT 60.497 47.826 0.00 0.00 41.55 2.27
49 50 2.039480 GGAACTAAACGGGAGGGACTTT 59.961 50.000 0.00 0.00 41.55 2.66
50 51 1.627329 GGAACTAAACGGGAGGGACTT 59.373 52.381 0.00 0.00 41.55 3.01
51 52 1.203275 AGGAACTAAACGGGAGGGACT 60.203 52.381 0.00 0.00 38.83 3.85
52 53 1.273759 AGGAACTAAACGGGAGGGAC 58.726 55.000 0.00 0.00 36.02 4.46
53 54 2.925966 TAGGAACTAAACGGGAGGGA 57.074 50.000 0.00 0.00 38.39 4.20
62 63 9.939802 GACTAGAAAAAGTCCATAGGAACTAAA 57.060 33.333 0.00 0.00 41.46 1.85
63 64 9.322769 AGACTAGAAAAAGTCCATAGGAACTAA 57.677 33.333 0.00 0.00 45.08 2.24
64 65 8.896722 AGACTAGAAAAAGTCCATAGGAACTA 57.103 34.615 0.00 0.00 45.59 2.24
65 66 7.676468 AGAGACTAGAAAAAGTCCATAGGAACT 59.324 37.037 0.00 0.00 45.86 3.01
66 67 7.762159 CAGAGACTAGAAAAAGTCCATAGGAAC 59.238 40.741 0.00 0.00 45.86 3.62
67 68 7.093289 CCAGAGACTAGAAAAAGTCCATAGGAA 60.093 40.741 0.00 0.00 45.86 3.36
68 69 6.381420 CCAGAGACTAGAAAAAGTCCATAGGA 59.619 42.308 0.00 0.00 45.86 2.94
69 70 6.407525 CCCAGAGACTAGAAAAAGTCCATAGG 60.408 46.154 0.00 0.00 45.86 2.57
70 71 6.381420 TCCCAGAGACTAGAAAAAGTCCATAG 59.619 42.308 0.00 0.00 45.86 2.23
71 72 6.154706 GTCCCAGAGACTAGAAAAAGTCCATA 59.845 42.308 0.00 0.00 45.86 2.74
72 73 5.046231 GTCCCAGAGACTAGAAAAAGTCCAT 60.046 44.000 0.00 0.00 45.86 3.41
73 74 4.283722 GTCCCAGAGACTAGAAAAAGTCCA 59.716 45.833 0.00 0.00 45.86 4.02
74 75 4.823157 GTCCCAGAGACTAGAAAAAGTCC 58.177 47.826 0.00 0.00 45.86 3.85
94 95 5.358725 TGTTTGGTTCAGGGACTTTTTAGTC 59.641 40.000 0.00 0.00 34.60 2.59
95 96 5.126545 GTGTTTGGTTCAGGGACTTTTTAGT 59.873 40.000 0.00 0.00 34.60 2.24
96 97 5.451381 GGTGTTTGGTTCAGGGACTTTTTAG 60.451 44.000 0.00 0.00 34.60 1.85
97 98 4.403113 GGTGTTTGGTTCAGGGACTTTTTA 59.597 41.667 0.00 0.00 34.60 1.52
98 99 3.196901 GGTGTTTGGTTCAGGGACTTTTT 59.803 43.478 0.00 0.00 34.60 1.94
99 100 2.764010 GGTGTTTGGTTCAGGGACTTTT 59.236 45.455 0.00 0.00 34.60 2.27
100 101 2.384828 GGTGTTTGGTTCAGGGACTTT 58.615 47.619 0.00 0.00 34.60 2.66
101 102 1.411074 GGGTGTTTGGTTCAGGGACTT 60.411 52.381 0.00 0.00 34.60 3.01
102 103 0.185175 GGGTGTTTGGTTCAGGGACT 59.815 55.000 0.00 0.00 43.88 3.85
103 104 0.826256 GGGGTGTTTGGTTCAGGGAC 60.826 60.000 0.00 0.00 0.00 4.46
104 105 1.539665 GGGGTGTTTGGTTCAGGGA 59.460 57.895 0.00 0.00 0.00 4.20
105 106 1.533033 GGGGGTGTTTGGTTCAGGG 60.533 63.158 0.00 0.00 0.00 4.45
106 107 0.774908 TAGGGGGTGTTTGGTTCAGG 59.225 55.000 0.00 0.00 0.00 3.86
107 108 2.225017 ACATAGGGGGTGTTTGGTTCAG 60.225 50.000 0.00 0.00 0.00 3.02
108 109 1.783979 ACATAGGGGGTGTTTGGTTCA 59.216 47.619 0.00 0.00 0.00 3.18
109 110 2.167662 CACATAGGGGGTGTTTGGTTC 58.832 52.381 0.00 0.00 0.00 3.62
110 111 1.501604 ACACATAGGGGGTGTTTGGTT 59.498 47.619 0.00 0.00 46.75 3.67
111 112 1.154430 ACACATAGGGGGTGTTTGGT 58.846 50.000 0.00 0.00 46.75 3.67
112 113 2.574369 TCTACACATAGGGGGTGTTTGG 59.426 50.000 3.32 0.00 46.75 3.28
113 114 3.992943 TCTACACATAGGGGGTGTTTG 57.007 47.619 3.32 0.00 46.75 2.93
114 115 4.855340 CATTCTACACATAGGGGGTGTTT 58.145 43.478 3.32 0.00 46.75 2.83
115 116 3.371595 GCATTCTACACATAGGGGGTGTT 60.372 47.826 3.32 0.00 46.75 3.32
117 118 2.439507 AGCATTCTACACATAGGGGGTG 59.560 50.000 0.00 0.00 41.95 4.61
118 119 2.776665 AGCATTCTACACATAGGGGGT 58.223 47.619 0.00 0.00 0.00 4.95
119 120 5.248640 CAATAGCATTCTACACATAGGGGG 58.751 45.833 0.00 0.00 0.00 5.40
120 121 5.221925 ACCAATAGCATTCTACACATAGGGG 60.222 44.000 0.00 0.00 0.00 4.79
121 122 5.869579 ACCAATAGCATTCTACACATAGGG 58.130 41.667 0.00 0.00 0.00 3.53
122 123 6.763355 AGACCAATAGCATTCTACACATAGG 58.237 40.000 0.00 0.00 0.00 2.57
123 124 7.928167 TCAAGACCAATAGCATTCTACACATAG 59.072 37.037 0.00 0.00 0.00 2.23
124 125 7.791029 TCAAGACCAATAGCATTCTACACATA 58.209 34.615 0.00 0.00 0.00 2.29
125 126 6.653020 TCAAGACCAATAGCATTCTACACAT 58.347 36.000 0.00 0.00 0.00 3.21
126 127 6.048732 TCAAGACCAATAGCATTCTACACA 57.951 37.500 0.00 0.00 0.00 3.72
127 128 7.559590 AATCAAGACCAATAGCATTCTACAC 57.440 36.000 0.00 0.00 0.00 2.90
128 129 7.715249 GGTAATCAAGACCAATAGCATTCTACA 59.285 37.037 0.00 0.00 36.91 2.74
129 130 7.095607 CGGTAATCAAGACCAATAGCATTCTAC 60.096 40.741 0.00 0.00 36.72 2.59
130 131 6.929049 CGGTAATCAAGACCAATAGCATTCTA 59.071 38.462 0.00 0.00 36.72 2.10
131 132 5.760253 CGGTAATCAAGACCAATAGCATTCT 59.240 40.000 0.00 0.00 36.72 2.40
132 133 5.527582 ACGGTAATCAAGACCAATAGCATTC 59.472 40.000 0.00 0.00 36.72 2.67
133 134 5.296780 CACGGTAATCAAGACCAATAGCATT 59.703 40.000 0.00 0.00 36.72 3.56
134 135 4.816385 CACGGTAATCAAGACCAATAGCAT 59.184 41.667 0.00 0.00 36.72 3.79
135 136 4.188462 CACGGTAATCAAGACCAATAGCA 58.812 43.478 0.00 0.00 36.72 3.49
136 137 4.034048 CACACGGTAATCAAGACCAATAGC 59.966 45.833 0.00 0.00 36.72 2.97
137 138 5.416083 TCACACGGTAATCAAGACCAATAG 58.584 41.667 0.00 0.00 36.72 1.73
138 139 5.408880 TCACACGGTAATCAAGACCAATA 57.591 39.130 0.00 0.00 36.72 1.90
139 140 4.280436 TCACACGGTAATCAAGACCAAT 57.720 40.909 0.00 0.00 36.72 3.16
140 141 3.755112 TCACACGGTAATCAAGACCAA 57.245 42.857 0.00 0.00 36.72 3.67
141 142 3.259625 TCATCACACGGTAATCAAGACCA 59.740 43.478 0.00 0.00 36.72 4.02
142 143 3.857052 TCATCACACGGTAATCAAGACC 58.143 45.455 0.00 0.00 0.00 3.85
143 144 4.744570 TCTCATCACACGGTAATCAAGAC 58.255 43.478 0.00 0.00 0.00 3.01
144 145 4.705023 TCTCTCATCACACGGTAATCAAGA 59.295 41.667 0.00 0.00 0.00 3.02
145 146 4.998788 TCTCTCATCACACGGTAATCAAG 58.001 43.478 0.00 0.00 0.00 3.02
146 147 4.705023 TCTCTCTCATCACACGGTAATCAA 59.295 41.667 0.00 0.00 0.00 2.57
147 148 4.270008 TCTCTCTCATCACACGGTAATCA 58.730 43.478 0.00 0.00 0.00 2.57
148 149 4.902443 TCTCTCTCATCACACGGTAATC 57.098 45.455 0.00 0.00 0.00 1.75
149 150 4.440802 GCTTCTCTCTCATCACACGGTAAT 60.441 45.833 0.00 0.00 0.00 1.89
150 151 3.119459 GCTTCTCTCTCATCACACGGTAA 60.119 47.826 0.00 0.00 0.00 2.85
151 152 2.423892 GCTTCTCTCTCATCACACGGTA 59.576 50.000 0.00 0.00 0.00 4.02
152 153 1.203523 GCTTCTCTCTCATCACACGGT 59.796 52.381 0.00 0.00 0.00 4.83
153 154 1.203287 TGCTTCTCTCTCATCACACGG 59.797 52.381 0.00 0.00 0.00 4.94
154 155 2.643933 TGCTTCTCTCTCATCACACG 57.356 50.000 0.00 0.00 0.00 4.49
155 156 5.876612 AAATTGCTTCTCTCTCATCACAC 57.123 39.130 0.00 0.00 0.00 3.82
156 157 6.889301 AAAAATTGCTTCTCTCTCATCACA 57.111 33.333 0.00 0.00 0.00 3.58
176 177 7.957002 TCCCAATGCACATTAAAGTAGAAAAA 58.043 30.769 0.00 0.00 0.00 1.94
177 178 7.531857 TCCCAATGCACATTAAAGTAGAAAA 57.468 32.000 0.00 0.00 0.00 2.29
178 179 7.450014 TCTTCCCAATGCACATTAAAGTAGAAA 59.550 33.333 0.00 0.00 0.00 2.52
179 180 6.945435 TCTTCCCAATGCACATTAAAGTAGAA 59.055 34.615 0.00 0.00 0.00 2.10
180 181 6.480763 TCTTCCCAATGCACATTAAAGTAGA 58.519 36.000 0.00 0.00 0.00 2.59
181 182 6.757897 TCTTCCCAATGCACATTAAAGTAG 57.242 37.500 0.00 0.00 0.00 2.57
182 183 8.271458 TCTATCTTCCCAATGCACATTAAAGTA 58.729 33.333 0.00 0.00 0.00 2.24
183 184 7.118723 TCTATCTTCCCAATGCACATTAAAGT 58.881 34.615 0.00 0.00 0.00 2.66
184 185 7.572523 TCTATCTTCCCAATGCACATTAAAG 57.427 36.000 0.00 1.76 0.00 1.85
185 186 7.560991 ACATCTATCTTCCCAATGCACATTAAA 59.439 33.333 0.00 0.00 0.00 1.52
186 187 7.062322 ACATCTATCTTCCCAATGCACATTAA 58.938 34.615 0.00 0.00 0.00 1.40
187 188 6.604171 ACATCTATCTTCCCAATGCACATTA 58.396 36.000 0.00 0.00 0.00 1.90
188 189 5.452255 ACATCTATCTTCCCAATGCACATT 58.548 37.500 0.00 0.00 0.00 2.71
189 190 5.057843 ACATCTATCTTCCCAATGCACAT 57.942 39.130 0.00 0.00 0.00 3.21
190 191 4.508551 ACATCTATCTTCCCAATGCACA 57.491 40.909 0.00 0.00 0.00 4.57
191 192 5.368145 TGTACATCTATCTTCCCAATGCAC 58.632 41.667 0.00 0.00 0.00 4.57
192 193 5.628797 TGTACATCTATCTTCCCAATGCA 57.371 39.130 0.00 0.00 0.00 3.96
193 194 7.516198 AAATGTACATCTATCTTCCCAATGC 57.484 36.000 9.23 0.00 0.00 3.56
219 220 9.231297 CCTCTGACTCTAAAATTTGTCCATAAA 57.769 33.333 0.00 0.00 0.00 1.40
220 221 7.829211 CCCTCTGACTCTAAAATTTGTCCATAA 59.171 37.037 0.00 0.00 0.00 1.90
221 222 7.338710 CCCTCTGACTCTAAAATTTGTCCATA 58.661 38.462 0.00 0.00 0.00 2.74
222 223 6.183347 CCCTCTGACTCTAAAATTTGTCCAT 58.817 40.000 0.00 0.00 0.00 3.41
223 224 5.514834 CCCCTCTGACTCTAAAATTTGTCCA 60.515 44.000 0.00 0.00 0.00 4.02
224 225 4.944317 CCCCTCTGACTCTAAAATTTGTCC 59.056 45.833 0.00 0.00 0.00 4.02
225 226 5.805728 TCCCCTCTGACTCTAAAATTTGTC 58.194 41.667 0.00 0.00 0.00 3.18
226 227 5.310857 ACTCCCCTCTGACTCTAAAATTTGT 59.689 40.000 0.00 0.00 0.00 2.83
227 228 5.810095 ACTCCCCTCTGACTCTAAAATTTG 58.190 41.667 0.00 0.00 0.00 2.32
228 229 6.731448 AGTACTCCCCTCTGACTCTAAAATTT 59.269 38.462 0.00 0.00 0.00 1.82
229 230 6.155393 CAGTACTCCCCTCTGACTCTAAAATT 59.845 42.308 0.00 0.00 0.00 1.82
230 231 5.659079 CAGTACTCCCCTCTGACTCTAAAAT 59.341 44.000 0.00 0.00 0.00 1.82
231 232 5.017490 CAGTACTCCCCTCTGACTCTAAAA 58.983 45.833 0.00 0.00 0.00 1.52
232 233 4.044317 ACAGTACTCCCCTCTGACTCTAAA 59.956 45.833 0.00 0.00 33.93 1.85
233 234 3.592427 ACAGTACTCCCCTCTGACTCTAA 59.408 47.826 0.00 0.00 33.93 2.10
234 235 3.191273 ACAGTACTCCCCTCTGACTCTA 58.809 50.000 0.00 0.00 33.93 2.43
235 236 1.997040 ACAGTACTCCCCTCTGACTCT 59.003 52.381 0.00 0.00 33.93 3.24
236 237 2.517998 ACAGTACTCCCCTCTGACTC 57.482 55.000 0.00 0.00 33.93 3.36
237 238 3.592427 TCTTACAGTACTCCCCTCTGACT 59.408 47.826 0.00 0.00 33.93 3.41
238 239 3.965694 TCTTACAGTACTCCCCTCTGAC 58.034 50.000 0.00 0.00 33.93 3.51
239 240 4.342359 GTTCTTACAGTACTCCCCTCTGA 58.658 47.826 0.00 0.00 33.93 3.27
240 241 3.447944 GGTTCTTACAGTACTCCCCTCTG 59.552 52.174 0.00 0.00 35.60 3.35
241 242 3.337301 AGGTTCTTACAGTACTCCCCTCT 59.663 47.826 0.00 0.00 0.00 3.69
242 243 3.447944 CAGGTTCTTACAGTACTCCCCTC 59.552 52.174 0.00 0.00 0.00 4.30
243 244 3.442076 CAGGTTCTTACAGTACTCCCCT 58.558 50.000 0.00 0.00 0.00 4.79
244 245 2.500504 CCAGGTTCTTACAGTACTCCCC 59.499 54.545 0.00 0.00 0.00 4.81
245 246 2.500504 CCCAGGTTCTTACAGTACTCCC 59.499 54.545 0.00 0.00 0.00 4.30
246 247 2.093606 GCCCAGGTTCTTACAGTACTCC 60.094 54.545 0.00 0.00 0.00 3.85
247 248 2.832733 AGCCCAGGTTCTTACAGTACTC 59.167 50.000 0.00 0.00 0.00 2.59
248 249 2.903926 AGCCCAGGTTCTTACAGTACT 58.096 47.619 0.00 0.00 0.00 2.73
249 250 3.132467 CCTAGCCCAGGTTCTTACAGTAC 59.868 52.174 0.00 0.00 39.91 2.73
250 251 3.371965 CCTAGCCCAGGTTCTTACAGTA 58.628 50.000 0.00 0.00 39.91 2.74
251 252 2.188817 CCTAGCCCAGGTTCTTACAGT 58.811 52.381 0.00 0.00 39.91 3.55
252 253 2.990066 CCTAGCCCAGGTTCTTACAG 57.010 55.000 0.00 0.00 39.91 2.74
295 296 3.980646 TGCTCAAACGTAAACTGCATT 57.019 38.095 0.00 0.00 0.00 3.56
297 298 2.225491 GGATGCTCAAACGTAAACTGCA 59.775 45.455 0.00 0.00 0.00 4.41
298 299 2.225491 TGGATGCTCAAACGTAAACTGC 59.775 45.455 0.00 0.00 0.00 4.40
300 301 2.484264 GCTGGATGCTCAAACGTAAACT 59.516 45.455 0.00 0.00 38.95 2.66
401 409 1.357761 TCTGGGTTGGGGATTTTCCTC 59.642 52.381 0.00 0.00 37.60 3.71
527 540 4.271816 CGATGGCCGACGGGAGAG 62.272 72.222 17.22 0.00 41.76 3.20
541 554 2.561956 CGGGTGTAGGGATCGCGAT 61.562 63.158 23.97 23.97 39.25 4.58
611 627 3.772025 CAGGGAGCAATATACCTCCTAGG 59.228 52.174 16.79 0.82 45.54 3.02
612 628 4.421131 ACAGGGAGCAATATACCTCCTAG 58.579 47.826 16.79 13.02 45.54 3.02
613 629 4.487282 ACAGGGAGCAATATACCTCCTA 57.513 45.455 16.79 0.00 45.54 2.94
614 630 3.352611 ACAGGGAGCAATATACCTCCT 57.647 47.619 16.79 5.27 45.54 3.69
615 631 3.391296 TGAACAGGGAGCAATATACCTCC 59.609 47.826 11.40 11.40 45.52 4.30
616 632 4.345257 TCTGAACAGGGAGCAATATACCTC 59.655 45.833 1.93 0.00 0.00 3.85
617 633 4.298626 TCTGAACAGGGAGCAATATACCT 58.701 43.478 1.93 0.00 0.00 3.08
654 670 0.320073 AACAGCAAGCTACGCCGTAA 60.320 50.000 0.00 0.00 0.00 3.18
677 693 0.768622 ATCCAATTTATCGCCCCGGA 59.231 50.000 0.73 0.00 0.00 5.14
688 704 2.224867 CCCCTCGGCAGATATCCAATTT 60.225 50.000 0.00 0.00 0.00 1.82
689 705 1.352352 CCCCTCGGCAGATATCCAATT 59.648 52.381 0.00 0.00 0.00 2.32
692 708 0.399949 AACCCCTCGGCAGATATCCA 60.400 55.000 0.00 0.00 0.00 3.41
706 722 1.736491 AAGAAACCCTCCCCAACCCC 61.736 60.000 0.00 0.00 0.00 4.95
708 724 0.481128 TCAAGAAACCCTCCCCAACC 59.519 55.000 0.00 0.00 0.00 3.77
710 726 2.888212 CAATCAAGAAACCCTCCCCAA 58.112 47.619 0.00 0.00 0.00 4.12
711 727 1.549950 GCAATCAAGAAACCCTCCCCA 60.550 52.381 0.00 0.00 0.00 4.96
749 949 5.291905 AGTAATTCCGAATGAAGGGGTAG 57.708 43.478 0.00 0.00 36.14 3.18
750 950 5.045432 ACAAGTAATTCCGAATGAAGGGGTA 60.045 40.000 0.00 0.00 36.14 3.69
751 951 4.263771 ACAAGTAATTCCGAATGAAGGGGT 60.264 41.667 0.00 0.00 36.14 4.95
753 953 4.034048 CGACAAGTAATTCCGAATGAAGGG 59.966 45.833 0.00 0.00 36.14 3.95
754 954 4.494199 GCGACAAGTAATTCCGAATGAAGG 60.494 45.833 0.00 0.00 36.14 3.46
755 955 4.092821 TGCGACAAGTAATTCCGAATGAAG 59.907 41.667 0.00 0.00 36.14 3.02
756 956 3.997681 TGCGACAAGTAATTCCGAATGAA 59.002 39.130 0.00 0.00 37.38 2.57
758 958 3.124466 TGTGCGACAAGTAATTCCGAATG 59.876 43.478 0.00 0.00 0.00 2.67
759 959 3.331150 TGTGCGACAAGTAATTCCGAAT 58.669 40.909 0.00 0.00 0.00 3.34
760 960 2.756829 TGTGCGACAAGTAATTCCGAA 58.243 42.857 0.00 0.00 0.00 4.30
761 961 2.442212 TGTGCGACAAGTAATTCCGA 57.558 45.000 0.00 0.00 0.00 4.55
762 962 3.529634 TTTGTGCGACAAGTAATTCCG 57.470 42.857 0.00 0.00 39.53 4.30
763 963 5.041951 TCATTTGTGCGACAAGTAATTCC 57.958 39.130 0.00 0.00 39.53 3.01
764 964 6.582295 ACATTCATTTGTGCGACAAGTAATTC 59.418 34.615 0.00 0.00 39.53 2.17
765 965 6.446318 ACATTCATTTGTGCGACAAGTAATT 58.554 32.000 0.00 0.00 39.53 1.40
766 966 6.012658 ACATTCATTTGTGCGACAAGTAAT 57.987 33.333 0.00 0.00 39.53 1.89
767 967 5.431420 ACATTCATTTGTGCGACAAGTAA 57.569 34.783 0.00 0.00 39.53 2.24
768 968 6.593770 AGATACATTCATTTGTGCGACAAGTA 59.406 34.615 0.00 0.00 39.53 2.24
769 969 3.988379 ACATTCATTTGTGCGACAAGT 57.012 38.095 0.00 0.00 39.53 3.16
770 970 5.872635 AGATACATTCATTTGTGCGACAAG 58.127 37.500 0.00 0.00 39.53 3.16
771 971 5.878332 AGATACATTCATTTGTGCGACAA 57.122 34.783 0.00 0.00 36.11 3.18
772 972 6.255670 GTCTAGATACATTCATTTGTGCGACA 59.744 38.462 0.00 0.00 0.00 4.35
773 973 6.560433 CGTCTAGATACATTCATTTGTGCGAC 60.560 42.308 0.00 0.00 0.00 5.19
774 974 5.458779 CGTCTAGATACATTCATTTGTGCGA 59.541 40.000 0.00 0.00 0.00 5.10
775 975 5.232202 ACGTCTAGATACATTCATTTGTGCG 59.768 40.000 0.00 0.00 0.00 5.34
776 976 6.589830 ACGTCTAGATACATTCATTTGTGC 57.410 37.500 0.00 0.00 0.00 4.57
791 991 9.117183 TGCATCTAGAACTAAAATACGTCTAGA 57.883 33.333 10.27 10.27 38.94 2.43
792 992 9.900710 ATGCATCTAGAACTAAAATACGTCTAG 57.099 33.333 0.00 0.00 0.00 2.43
793 993 9.894783 GATGCATCTAGAACTAAAATACGTCTA 57.105 33.333 19.70 0.00 0.00 2.59
794 994 7.868415 GGATGCATCTAGAACTAAAATACGTCT 59.132 37.037 25.28 0.00 0.00 4.18
795 995 7.652105 TGGATGCATCTAGAACTAAAATACGTC 59.348 37.037 25.28 3.59 0.00 4.34
796 996 7.497595 TGGATGCATCTAGAACTAAAATACGT 58.502 34.615 25.28 0.00 0.00 3.57
797 997 7.946655 TGGATGCATCTAGAACTAAAATACG 57.053 36.000 25.28 0.00 0.00 3.06
801 1001 8.397906 CGAAAATGGATGCATCTAGAACTAAAA 58.602 33.333 25.28 0.70 0.00 1.52
802 1002 7.768582 TCGAAAATGGATGCATCTAGAACTAAA 59.231 33.333 25.28 2.59 0.00 1.85
803 1003 7.272244 TCGAAAATGGATGCATCTAGAACTAA 58.728 34.615 25.28 4.02 0.00 2.24
804 1004 6.816136 TCGAAAATGGATGCATCTAGAACTA 58.184 36.000 25.28 3.50 0.00 2.24
805 1005 5.674525 TCGAAAATGGATGCATCTAGAACT 58.325 37.500 25.28 6.55 0.00 3.01
806 1006 5.755375 TCTCGAAAATGGATGCATCTAGAAC 59.245 40.000 25.28 9.59 0.00 3.01
807 1007 5.755375 GTCTCGAAAATGGATGCATCTAGAA 59.245 40.000 25.28 10.04 0.00 2.10
808 1008 5.163416 TGTCTCGAAAATGGATGCATCTAGA 60.163 40.000 25.28 11.92 0.00 2.43
809 1009 5.052481 TGTCTCGAAAATGGATGCATCTAG 58.948 41.667 25.28 8.17 0.00 2.43
810 1010 5.022282 TGTCTCGAAAATGGATGCATCTA 57.978 39.130 25.28 20.79 0.00 1.98
811 1011 3.877559 TGTCTCGAAAATGGATGCATCT 58.122 40.909 25.28 5.84 0.00 2.90
812 1012 4.095483 ACTTGTCTCGAAAATGGATGCATC 59.905 41.667 18.81 18.81 0.00 3.91
813 1013 4.012374 ACTTGTCTCGAAAATGGATGCAT 58.988 39.130 0.00 0.00 0.00 3.96
814 1014 3.411446 ACTTGTCTCGAAAATGGATGCA 58.589 40.909 0.00 0.00 0.00 3.96
815 1015 5.545658 TTACTTGTCTCGAAAATGGATGC 57.454 39.130 0.00 0.00 0.00 3.91
816 1016 7.698130 GGATTTTACTTGTCTCGAAAATGGATG 59.302 37.037 0.00 0.00 32.94 3.51
817 1017 7.414098 CGGATTTTACTTGTCTCGAAAATGGAT 60.414 37.037 0.00 0.00 32.94 3.41
818 1018 6.128391 CGGATTTTACTTGTCTCGAAAATGGA 60.128 38.462 0.00 0.00 32.94 3.41
819 1019 6.021596 CGGATTTTACTTGTCTCGAAAATGG 58.978 40.000 0.00 0.00 32.94 3.16
820 1020 6.827641 TCGGATTTTACTTGTCTCGAAAATG 58.172 36.000 0.00 0.00 32.94 2.32
821 1021 7.295930 GTTCGGATTTTACTTGTCTCGAAAAT 58.704 34.615 0.00 0.00 37.18 1.82
822 1022 6.562640 CGTTCGGATTTTACTTGTCTCGAAAA 60.563 38.462 0.00 0.00 37.18 2.29
823 1023 5.107760 CGTTCGGATTTTACTTGTCTCGAAA 60.108 40.000 0.00 0.00 37.18 3.46
824 1024 4.383649 CGTTCGGATTTTACTTGTCTCGAA 59.616 41.667 0.00 0.00 33.85 3.71
825 1025 3.916172 CGTTCGGATTTTACTTGTCTCGA 59.084 43.478 0.00 0.00 0.00 4.04
826 1026 3.060363 CCGTTCGGATTTTACTTGTCTCG 59.940 47.826 5.19 0.00 0.00 4.04
827 1027 4.240096 TCCGTTCGGATTTTACTTGTCTC 58.760 43.478 10.00 0.00 0.00 3.36
828 1028 4.243270 CTCCGTTCGGATTTTACTTGTCT 58.757 43.478 14.34 0.00 33.34 3.41
829 1029 3.370061 CCTCCGTTCGGATTTTACTTGTC 59.630 47.826 14.34 0.00 33.34 3.18
830 1030 3.332034 CCTCCGTTCGGATTTTACTTGT 58.668 45.455 14.34 0.00 33.34 3.16
831 1031 2.676342 CCCTCCGTTCGGATTTTACTTG 59.324 50.000 14.34 0.68 33.34 3.16
832 1032 2.568509 TCCCTCCGTTCGGATTTTACTT 59.431 45.455 14.34 0.00 33.34 2.24
833 1033 2.167900 CTCCCTCCGTTCGGATTTTACT 59.832 50.000 14.34 0.00 33.34 2.24
834 1034 2.093816 ACTCCCTCCGTTCGGATTTTAC 60.094 50.000 14.34 0.00 33.34 2.01
835 1035 2.181975 ACTCCCTCCGTTCGGATTTTA 58.818 47.619 14.34 0.89 33.34 1.52
836 1036 0.981943 ACTCCCTCCGTTCGGATTTT 59.018 50.000 14.34 0.00 33.34 1.82
837 1037 1.856629 TACTCCCTCCGTTCGGATTT 58.143 50.000 14.34 0.93 33.34 2.17
838 1038 1.962100 GATACTCCCTCCGTTCGGATT 59.038 52.381 14.34 0.62 33.34 3.01
839 1039 1.145325 AGATACTCCCTCCGTTCGGAT 59.855 52.381 14.34 2.21 33.34 4.18
840 1040 0.549950 AGATACTCCCTCCGTTCGGA 59.450 55.000 13.34 13.34 0.00 4.55
841 1041 0.953003 GAGATACTCCCTCCGTTCGG 59.047 60.000 4.74 4.74 0.00 4.30
842 1042 1.970092 AGAGATACTCCCTCCGTTCG 58.030 55.000 0.00 0.00 0.00 3.95
843 1043 3.447944 ACAAAGAGATACTCCCTCCGTTC 59.552 47.826 0.00 0.00 0.00 3.95
844 1044 3.195825 CACAAAGAGATACTCCCTCCGTT 59.804 47.826 0.00 0.00 0.00 4.44
845 1045 2.761208 CACAAAGAGATACTCCCTCCGT 59.239 50.000 0.00 0.00 0.00 4.69
846 1046 2.761208 ACACAAAGAGATACTCCCTCCG 59.239 50.000 0.00 0.00 0.00 4.63
847 1047 3.680196 GCACACAAAGAGATACTCCCTCC 60.680 52.174 0.00 0.00 0.00 4.30
848 1048 3.055819 TGCACACAAAGAGATACTCCCTC 60.056 47.826 0.00 0.00 0.00 4.30
849 1049 2.906389 TGCACACAAAGAGATACTCCCT 59.094 45.455 0.00 0.00 0.00 4.20
850 1050 3.265791 CTGCACACAAAGAGATACTCCC 58.734 50.000 0.00 0.00 0.00 4.30
851 1051 2.675348 GCTGCACACAAAGAGATACTCC 59.325 50.000 0.00 0.00 0.00 3.85
852 1052 3.329386 TGCTGCACACAAAGAGATACTC 58.671 45.455 0.00 0.00 0.00 2.59
853 1053 3.407424 TGCTGCACACAAAGAGATACT 57.593 42.857 0.00 0.00 0.00 2.12
854 1054 4.691860 ATTGCTGCACACAAAGAGATAC 57.308 40.909 0.00 0.00 0.00 2.24
855 1055 5.241285 TCAAATTGCTGCACACAAAGAGATA 59.759 36.000 0.00 0.00 0.00 1.98
856 1056 4.038282 TCAAATTGCTGCACACAAAGAGAT 59.962 37.500 0.00 0.00 0.00 2.75
857 1057 3.380954 TCAAATTGCTGCACACAAAGAGA 59.619 39.130 0.00 0.00 0.00 3.10
858 1058 3.708890 TCAAATTGCTGCACACAAAGAG 58.291 40.909 0.00 0.00 0.00 2.85
859 1059 3.797451 TCAAATTGCTGCACACAAAGA 57.203 38.095 0.00 0.00 0.00 2.52
860 1060 5.235616 AGAAATCAAATTGCTGCACACAAAG 59.764 36.000 0.00 0.00 0.00 2.77
861 1061 5.117584 AGAAATCAAATTGCTGCACACAAA 58.882 33.333 0.00 0.00 0.00 2.83
862 1062 4.695396 AGAAATCAAATTGCTGCACACAA 58.305 34.783 0.00 0.16 0.00 3.33
863 1063 4.325028 AGAAATCAAATTGCTGCACACA 57.675 36.364 0.00 0.00 0.00 3.72
864 1064 4.143473 CGAAGAAATCAAATTGCTGCACAC 60.143 41.667 0.00 0.00 0.00 3.82
865 1065 3.982701 CGAAGAAATCAAATTGCTGCACA 59.017 39.130 0.00 0.00 0.00 4.57
866 1066 4.229096 TCGAAGAAATCAAATTGCTGCAC 58.771 39.130 0.00 0.00 0.00 4.57
867 1067 4.502171 TCGAAGAAATCAAATTGCTGCA 57.498 36.364 0.00 0.00 0.00 4.41
883 1083 1.916000 CTACGCCTTTACGGTTCGAAG 59.084 52.381 0.00 0.00 37.37 3.79
909 1109 2.570302 GGTACCCAGTTCCAGCTAAGAA 59.430 50.000 0.00 0.00 0.00 2.52
930 1130 0.178068 AACGTGAATCGGGAGGGATG 59.822 55.000 0.00 0.00 44.69 3.51
961 1161 4.330250 ACTGAACCCTGACATCAAAGATG 58.670 43.478 5.50 5.50 0.00 2.90
990 1193 0.965439 CCCAACCCATCTTTCGCAAA 59.035 50.000 0.00 0.00 0.00 3.68
997 1200 2.073776 GGATATCCCCCAACCCATCTT 58.926 52.381 11.02 0.00 0.00 2.40
1021 1224 1.372087 GCCGCCTTCAGTCCAATCAG 61.372 60.000 0.00 0.00 0.00 2.90
1051 1254 1.296649 GAACGAAATACGCTGCGGC 60.297 57.895 26.95 7.70 46.94 6.53
1095 1298 1.059913 AGGTGTATATGAGGGGCAGC 58.940 55.000 0.00 0.00 0.00 5.25
1173 1376 0.749091 CATTGGATGCCTTGCCGAGA 60.749 55.000 0.00 0.00 0.00 4.04
1383 1586 2.866028 CTTCTTGGCAGCTCGCAC 59.134 61.111 9.78 1.60 45.17 5.34
1627 1830 5.047092 TCAGATGCATGAAGACAAGTAGACA 60.047 40.000 2.46 0.00 0.00 3.41
1895 2099 4.678044 CGCGCATATGGGTATATCTTGACT 60.678 45.833 19.73 0.00 0.00 3.41
2023 2227 4.780815 TGATGGCGATTTACTGGAGATTT 58.219 39.130 0.00 0.00 0.00 2.17
2029 2233 6.045318 CCTCTATATGATGGCGATTTACTGG 58.955 44.000 0.00 0.00 0.00 4.00
2038 2242 4.790765 TCTTGACCTCTATATGATGGCG 57.209 45.455 0.00 0.00 0.00 5.69
2072 2276 1.837538 GCGCAAACCTTGTAGTCGCA 61.838 55.000 0.30 0.00 38.00 5.10
2147 2351 5.013704 TCCTAAGTCTAAATCAGGCCAAACA 59.986 40.000 5.01 0.00 0.00 2.83
2246 2450 2.814919 CCCAATTGTACAAACCGCTGTA 59.185 45.455 13.23 0.00 0.00 2.74
2247 2451 1.611491 CCCAATTGTACAAACCGCTGT 59.389 47.619 13.23 0.00 0.00 4.40
2303 2507 0.540365 AAATGGGCATGCTATCGGGG 60.540 55.000 18.92 0.00 0.00 5.73
2307 2511 5.166398 GCTTATTCAAATGGGCATGCTATC 58.834 41.667 18.92 8.37 0.00 2.08
2335 2539 6.183360 GCTGCAAACCGTCTATAACTATTGTT 60.183 38.462 0.00 0.00 39.98 2.83
2418 2628 2.713967 CCGTGTCCCCGTATCGGTT 61.714 63.158 7.40 0.00 46.80 4.44
2455 2665 5.359860 GGAAAATTTCATATTCCGTGTCCCT 59.640 40.000 8.09 0.00 33.86 4.20
2469 2679 7.174599 CCATATGGCTGTTTTTGGAAAATTTCA 59.825 33.333 9.29 0.00 0.00 2.69
2471 2681 6.433716 CCCATATGGCTGTTTTTGGAAAATTT 59.566 34.615 16.97 0.00 0.00 1.82
2472 2682 5.945191 CCCATATGGCTGTTTTTGGAAAATT 59.055 36.000 16.97 0.00 0.00 1.82
2619 2836 8.937835 TCAGTATGAGGAAATTGAGGATCATTA 58.062 33.333 0.00 0.00 44.01 1.90
2688 2945 0.952984 GTGACAGTGAAGAGGCCTGC 60.953 60.000 12.00 1.09 0.00 4.85
2728 2996 0.460987 CTTCTTGCTGGCTACCGAGG 60.461 60.000 0.00 0.00 0.00 4.63
2748 3016 2.963928 CTTGTGGCTGGTGGTGCTGA 62.964 60.000 0.00 0.00 0.00 4.26
2757 3025 1.954528 CTTGCTGTCTTGTGGCTGG 59.045 57.895 0.00 0.00 0.00 4.85
2873 3194 0.250295 TGCAAGTTGGGAAGACCTCG 60.250 55.000 4.75 0.00 41.11 4.63
2945 3276 0.321122 GGTGACAGTGAAGAGGCCTG 60.321 60.000 12.00 0.00 0.00 4.85
2979 3310 4.845447 GCATGGCATCTGGGGGCA 62.845 66.667 0.00 0.00 45.36 5.36
3014 3345 3.002348 GTCTTGTTACTGCTGGTGTTGAC 59.998 47.826 0.00 0.00 0.00 3.18
3076 3409 1.694525 CCCCTCTCTCCTTTCCCCC 60.695 68.421 0.00 0.00 0.00 5.40
3081 3414 1.097722 AGGTCTCCCCTCTCTCCTTT 58.902 55.000 0.00 0.00 40.71 3.11
3086 3419 2.015081 CCTCAGGTCTCCCCTCTCT 58.985 63.158 0.00 0.00 43.86 3.10
3087 3420 1.760480 GCCTCAGGTCTCCCCTCTC 60.760 68.421 0.00 0.00 43.86 3.20
3105 3438 1.447317 GCATCAAGGTATGGGCACGG 61.447 60.000 0.00 0.00 32.28 4.94
3113 3451 4.685575 GCTTTCCTCTCAGCATCAAGGTAT 60.686 45.833 0.00 0.00 35.95 2.73
3117 3455 2.988570 AGCTTTCCTCTCAGCATCAAG 58.011 47.619 0.00 0.00 38.61 3.02
3121 3459 1.461559 GCAAGCTTTCCTCTCAGCAT 58.538 50.000 0.00 0.00 38.61 3.79
3138 3476 1.264045 TGACATGTGGATCTCCGGCA 61.264 55.000 1.15 0.00 39.43 5.69
3196 3541 1.248486 CGTCTCCTGTTCTCCACTCA 58.752 55.000 0.00 0.00 0.00 3.41
3214 3559 2.537560 GCATCAATCGAGCACCCCG 61.538 63.158 0.00 0.00 0.00 5.73
3218 3563 1.089920 AACAGGCATCAATCGAGCAC 58.910 50.000 0.00 0.00 0.00 4.40
3278 3623 4.202524 TGGCTTAAACAACTGGGATACACT 60.203 41.667 0.00 0.00 39.74 3.55
3280 3625 4.374689 TGGCTTAAACAACTGGGATACA 57.625 40.909 0.00 0.00 39.74 2.29
3328 3673 6.209986 TCATGTAGTATCCCGTAATTTCCGAT 59.790 38.462 0.00 0.00 0.00 4.18
3329 3674 5.535783 TCATGTAGTATCCCGTAATTTCCGA 59.464 40.000 0.00 0.00 0.00 4.55
3359 3704 4.393778 ACGGGGAGGTCGGGACAT 62.394 66.667 0.75 0.00 0.00 3.06
3366 3711 2.668550 GTGCAACACGGGGAGGTC 60.669 66.667 0.00 0.00 36.32 3.85
3394 3746 3.328382 TCAAAAGTCACTGTATCCCCG 57.672 47.619 0.00 0.00 0.00 5.73
3405 3757 1.601903 GCACCGACACATCAAAAGTCA 59.398 47.619 0.00 0.00 32.68 3.41
3415 3767 1.045407 ACCTAGAAAGCACCGACACA 58.955 50.000 0.00 0.00 0.00 3.72
3607 3960 7.775093 TGATGGAGAAACATATACAGGGAAAAG 59.225 37.037 0.00 0.00 0.00 2.27
3609 3962 7.092444 ACTGATGGAGAAACATATACAGGGAAA 60.092 37.037 0.00 0.00 29.39 3.13
3616 3969 6.763135 TGCTTGACTGATGGAGAAACATATAC 59.237 38.462 0.00 0.00 0.00 1.47
3622 3975 4.836125 TTTGCTTGACTGATGGAGAAAC 57.164 40.909 0.00 0.00 0.00 2.78
3650 4004 2.754946 TTTACGGGCTACTTCACTGG 57.245 50.000 0.00 0.00 0.00 4.00
3664 4018 7.259290 ACATCAACCTAATGGCTAATTTACG 57.741 36.000 0.00 0.00 36.63 3.18
3799 4153 2.346847 GCACTTAGATGACGAGCTGTTG 59.653 50.000 0.00 0.00 0.00 3.33
3990 4352 1.609208 TTGAGGGAGAAAGCAAGTGC 58.391 50.000 0.00 0.00 42.49 4.40
4124 4486 5.179452 ACAGTAGATACCACCAAAGCATT 57.821 39.130 0.00 0.00 0.00 3.56
4136 4498 9.733219 GACATTTACTAGGACAACAGTAGATAC 57.267 37.037 0.00 0.00 0.00 2.24
4248 4610 7.144722 TCACTGAACAGTATGCATAAAAAGG 57.855 36.000 8.28 0.00 42.53 3.11
4322 4684 6.215636 AGCAGGGACCTCTATTTTAAGAAAGA 59.784 38.462 0.00 0.00 0.00 2.52
4379 4741 4.138290 AGGTACGGATGAGAGACATACTG 58.862 47.826 0.00 0.00 39.56 2.74
4409 4773 3.278574 TGAATGCATGGTACTGCCTTAC 58.721 45.455 0.00 0.00 41.58 2.34
4551 4923 7.824289 TCAATCAACATAGGTAAGTCAGGAAAG 59.176 37.037 0.00 0.00 0.00 2.62
4607 4979 6.825721 ACCTTAGCATGACCTTAATCAAAGAG 59.174 38.462 0.00 0.00 37.38 2.85
4617 4989 1.352352 AGCACACCTTAGCATGACCTT 59.648 47.619 0.00 0.00 0.00 3.50
4622 4994 1.394917 GAACGAGCACACCTTAGCATG 59.605 52.381 0.00 0.00 0.00 4.06
4628 5000 3.895232 ATATCAGAACGAGCACACCTT 57.105 42.857 0.00 0.00 0.00 3.50
4630 5002 4.946784 AAAATATCAGAACGAGCACACC 57.053 40.909 0.00 0.00 0.00 4.16
4655 5027 4.590222 AGGATGAAAAACCAAGTGAGCATT 59.410 37.500 0.00 0.00 0.00 3.56
4694 5066 2.717639 AGCCGCTCATTAACAAGGAT 57.282 45.000 0.00 0.00 0.00 3.24
4746 5118 4.736473 TGCCATCAGATGATCATTCCAAT 58.264 39.130 12.41 0.00 31.21 3.16
4782 5157 0.179174 CATTTAGCCGGAACCGTTGC 60.179 55.000 5.05 9.11 37.81 4.17
4798 5173 2.239400 CATCAGCTCCATCATGGCATT 58.761 47.619 0.00 0.00 37.47 3.56
4860 5235 6.772716 AGATGAAAAAGGAAAACAGCTCTGTA 59.227 34.615 2.62 0.00 44.13 2.74
4931 5306 4.327680 GAAACAGCATAAGGAACCTGACT 58.672 43.478 0.00 0.00 0.00 3.41
4934 5309 3.125316 GTCGAAACAGCATAAGGAACCTG 59.875 47.826 0.00 0.00 0.00 4.00
4945 5320 3.073678 AGCAATACATGTCGAAACAGCA 58.926 40.909 0.00 0.00 39.20 4.41
4985 5360 6.566197 AAGAAACCATGAAAGAAGCAGTAG 57.434 37.500 0.00 0.00 0.00 2.57
5017 5392 5.280654 AGGTAGAAACAACCAACGACTTA 57.719 39.130 0.00 0.00 39.64 2.24
5020 5395 5.050567 CAGTAAGGTAGAAACAACCAACGAC 60.051 44.000 0.00 0.00 39.64 4.34
5024 5399 3.810941 CGCAGTAAGGTAGAAACAACCAA 59.189 43.478 0.00 0.00 39.64 3.67
5027 5402 4.304939 AGTCGCAGTAAGGTAGAAACAAC 58.695 43.478 0.00 0.00 0.00 3.32
5038 5413 2.288213 TGACAGGACAAGTCGCAGTAAG 60.288 50.000 0.00 0.00 38.83 2.34
5039 5414 1.684450 TGACAGGACAAGTCGCAGTAA 59.316 47.619 0.00 0.00 38.83 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.