AutoCloner

Multiple sequence alignment - TraesCS3D01G364900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G364900	chr3D	100.000	3534	0	0	1	3534	478737607	478741140	0.000000e+00	6527.0
1	TraesCS3D01G364900	chr3D	86.042	3353	332	64	239	3533	479449720	479452994	0.000000e+00	3474.0
2	TraesCS3D01G364900	chr3D	85.260	2768	301	52	810	3534	479914863	479912160	0.000000e+00	2752.0
3	TraesCS3D01G364900	chr3D	82.912	2095	287	31	1469	3532	479002782	479004836	0.000000e+00	1820.0
4	TraesCS3D01G364900	chr3D	83.220	1913	252	37	1538	3415	478751505	478753383	0.000000e+00	1690.0
5	TraesCS3D01G364900	chr3D	87.435	581	44	12	239	810	479918918	479918358	2.970000e-180	641.0
6	TraesCS3D01G364900	chr3D	77.473	839	145	23	2588	3392	478748445	478749273	2.490000e-126	462.0
7	TraesCS3D01G364900	chr3D	76.042	960	151	40	2616	3534	479152688	479153609	3.260000e-115	425.0
8	TraesCS3D01G364900	chr3D	79.620	368	39	16	1	355	479116180	479116524	7.630000e-57	231.0
9	TraesCS3D01G364900	chr3D	86.047	129	8	6	3412	3534	479855071	479854947	2.860000e-26	130.0
10	TraesCS3D01G364900	chr3B	91.999	3037	193	22	161	3186	639148556	639151553	0.000000e+00	4217.0
11	TraesCS3D01G364900	chr3B	92.551	2967	172	25	230	3186	638959697	638962624	0.000000e+00	4209.0
12	TraesCS3D01G364900	chr3B	92.024	2959	201	22	237	3186	639552859	639555791	0.000000e+00	4124.0
13	TraesCS3D01G364900	chr3B	91.822	2739	144	35	1	2724	639753245	639755918	0.000000e+00	3744.0
14	TraesCS3D01G364900	chr3B	92.056	2593	174	14	244	2829	639398411	639400978	0.000000e+00	3618.0
15	TraesCS3D01G364900	chr3B	88.028	1420	126	25	2144	3534	639773556	639774960	0.000000e+00	1640.0
16	TraesCS3D01G364900	chr3B	81.417	2131	285	56	1470	3534	639854830	639856915	0.000000e+00	1639.0
17	TraesCS3D01G364900	chr3B	82.444	1948	271	38	1470	3376	639834836	639836753	0.000000e+00	1637.0
18	TraesCS3D01G364900	chr3B	84.124	1392	197	16	1470	2855	639892681	639894054	0.000000e+00	1325.0
19	TraesCS3D01G364900	chr3B	76.947	963	145	40	2613	3534	639404415	639405341	8.880000e-131	477.0
20	TraesCS3D01G364900	chr3B	76.670	943	157	37	2634	3534	639857762	639858683	6.910000e-127	464.0
21	TraesCS3D01G364900	chr3B	91.667	312	26	0	3223	3534	638962625	638962936	1.950000e-117	433.0
22	TraesCS3D01G364900	chr3B	98.283	233	2	2	1	232	639397757	639397988	1.180000e-109	407.0
23	TraesCS3D01G364900	chr3B	98.283	233	2	2	1	232	639552145	639552376	1.180000e-109	407.0
24	TraesCS3D01G364900	chr3B	96.983	232	3	4	1	229	638959411	638959641	1.540000e-103	387.0
25	TraesCS3D01G364900	chr3B	93.976	249	15	0	2938	3186	639401150	639401398	9.260000e-101	377.0
26	TraesCS3D01G364900	chr3B	88.498	313	18	2	3223	3534	639555792	639556087	2.590000e-96	363.0
27	TraesCS3D01G364900	chr3B	93.004	243	16	1	3223	3464	639401399	639401641	1.560000e-93	353.0
28	TraesCS3D01G364900	chr3B	97.115	208	5	1	1	208	639148366	639148572	2.020000e-92	350.0
29	TraesCS3D01G364900	chr3B	87.619	315	19	3	3223	3534	639151554	639151851	7.260000e-92	348.0
30	TraesCS3D01G364900	chr3A	90.864	2627	159	32	239	2849	622276817	622279378	0.000000e+00	3446.0
31	TraesCS3D01G364900	chr3A	84.048	1818	215	32	1655	3442	622819043	622820815	0.000000e+00	1681.0
32	TraesCS3D01G364900	chr3A	83.381	1739	216	39	1823	3534	622891720	622893412	0.000000e+00	1543.0
33	TraesCS3D01G364900	chr3A	84.879	1402	154	32	239	1611	622817669	622819041	0.000000e+00	1362.0
34	TraesCS3D01G364900	chr3A	84.864	1394	162	27	239	1611	622709269	622710634	0.000000e+00	1360.0
35	TraesCS3D01G364900	chr3A	84.522	1402	161	27	239	1611	622717982	622719356	0.000000e+00	1336.0
36	TraesCS3D01G364900	chr3A	83.878	1408	162	30	239	1611	622898881	622900258	0.000000e+00	1282.0
37	TraesCS3D01G364900	chr3A	84.166	1181	146	25	1823	2986	622801595	622802751	0.000000e+00	1107.0
38	TraesCS3D01G364900	chr3A	93.333	615	36	2	2891	3504	622279388	622279998	0.000000e+00	904.0
39	TraesCS3D01G364900	chr3A	93.289	149	10	0	1	149	622276605	622276753	1.650000e-53	220.0
40	TraesCS3D01G364900	chr3A	100.000	32	0	0	3503	3534	622280024	622280055	3.810000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G364900	chr3D	478737607	478741140	3533	False	6527.000000	6527	100.000000	1	3534	1	chr3D.!!$F1	3533
1	TraesCS3D01G364900	chr3D	479449720	479452994	3274	False	3474.000000	3474	86.042000	239	3533	1	chr3D.!!$F5	3294
2	TraesCS3D01G364900	chr3D	479002782	479004836	2054	False	1820.000000	1820	82.912000	1469	3532	1	chr3D.!!$F2	2063
3	TraesCS3D01G364900	chr3D	479912160	479918918	6758	True	1696.500000	2752	86.347500	239	3534	2	chr3D.!!$R2	3295
4	TraesCS3D01G364900	chr3D	478748445	478753383	4938	False	1076.000000	1690	80.346500	1538	3415	2	chr3D.!!$F6	1877
5	TraesCS3D01G364900	chr3D	479152688	479153609	921	False	425.000000	425	76.042000	2616	3534	1	chr3D.!!$F4	918
6	TraesCS3D01G364900	chr3B	639753245	639755918	2673	False	3744.000000	3744	91.822000	1	2724	1	chr3B.!!$F1	2723
7	TraesCS3D01G364900	chr3B	638959411	638962936	3525	False	1676.333333	4209	93.733667	1	3534	3	chr3B.!!$F5	3533
8	TraesCS3D01G364900	chr3B	639773556	639774960	1404	False	1640.000000	1640	88.028000	2144	3534	1	chr3B.!!$F2	1390
9	TraesCS3D01G364900	chr3B	639148366	639151851	3485	False	1638.333333	4217	92.244333	1	3534	3	chr3B.!!$F6	3533
10	TraesCS3D01G364900	chr3B	639834836	639836753	1917	False	1637.000000	1637	82.444000	1470	3376	1	chr3B.!!$F3	1906
11	TraesCS3D01G364900	chr3B	639552145	639556087	3942	False	1631.333333	4124	92.935000	1	3534	3	chr3B.!!$F8	3533
12	TraesCS3D01G364900	chr3B	639892681	639894054	1373	False	1325.000000	1325	84.124000	1470	2855	1	chr3B.!!$F4	1385
13	TraesCS3D01G364900	chr3B	639854830	639858683	3853	False	1051.500000	1639	79.043500	1470	3534	2	chr3B.!!$F9	2064
14	TraesCS3D01G364900	chr3B	639397757	639405341	7584	False	1046.400000	3618	90.853200	1	3534	5	chr3B.!!$F7	3533
15	TraesCS3D01G364900	chr3A	622891720	622893412	1692	False	1543.000000	1543	83.381000	1823	3534	1	chr3A.!!$F4	1711
16	TraesCS3D01G364900	chr3A	622817669	622820815	3146	False	1521.500000	1681	84.463500	239	3442	2	chr3A.!!$F7	3203
17	TraesCS3D01G364900	chr3A	622709269	622710634	1365	False	1360.000000	1360	84.864000	239	1611	1	chr3A.!!$F1	1372
18	TraesCS3D01G364900	chr3A	622717982	622719356	1374	False	1336.000000	1336	84.522000	239	1611	1	chr3A.!!$F2	1372
19	TraesCS3D01G364900	chr3A	622898881	622900258	1377	False	1282.000000	1282	83.878000	239	1611	1	chr3A.!!$F5	1372
20	TraesCS3D01G364900	chr3A	622276605	622280055	3450	False	1157.550000	3446	94.371500	1	3534	4	chr3A.!!$F6	3533
21	TraesCS3D01G364900	chr3A	622801595	622802751	1156	False	1107.000000	1107	84.166000	1823	2986	1	chr3A.!!$F3	1163

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
941	5094	0.100503	GCTGAACCACACACCACAAC	59.899	55.0	0.0	0.0	0.0	3.32	F
948	5101	0.455410	CACACACCACAACCCACAAG	59.545	55.0	0.0	0.0	0.0	3.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1762	7374	2.507854	CGGGGCTCACGATACCCAT	61.508	63.158	9.2	0.0	46.21	4.00	R
2862	8574	2.579738	GCGAAGACTCCCCTCCAC	59.420	66.667	0.0	0.0	0.00	4.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
80	83	3.260632	GGAGGAGGGCTCTATCTGATTTC	59.739	52.174	0.00	0.00	0.00	2.17
222	255	5.728351	TTTTTGTAGAACACGGAAGAGTG	57.272	39.130	0.00	0.00	46.83	3.51
337	932	4.528987	GTCCAGGCCCAAAAATAAAAGGTA	59.471	41.667	0.00	0.00	0.00	3.08
451	1051	8.244113	CCTTTTGTCACCTATCTATTTTTCCAC	58.756	37.037	0.00	0.00	0.00	4.02
525	1126	6.264088	CGTAAGACTCCTTGTACTAATCCAC	58.736	44.000	0.00	0.00	43.02	4.02
700	1311	4.341502	CAAAACCAGCACGCCCCG	62.342	66.667	0.00	0.00	0.00	5.73
739	1351	2.434359	GCTTAACTCGCGGCCACT	60.434	61.111	6.13	0.00	0.00	4.00
862	5007	7.657354	ACGTGAATTTATTAGCTATCTGATGCA	59.343	33.333	0.00	0.00	0.00	3.96
936	5089	0.751643	ACAAGGCTGAACCACACACC	60.752	55.000	0.00	0.00	43.14	4.16
937	5090	0.751277	CAAGGCTGAACCACACACCA	60.751	55.000	0.00	0.00	43.14	4.17
938	5091	0.751643	AAGGCTGAACCACACACCAC	60.752	55.000	0.00	0.00	43.14	4.16
939	5092	1.453015	GGCTGAACCACACACCACA	60.453	57.895	0.00	0.00	38.86	4.17
940	5093	1.034838	GGCTGAACCACACACCACAA	61.035	55.000	0.00	0.00	38.86	3.33
941	5094	0.100503	GCTGAACCACACACCACAAC	59.899	55.000	0.00	0.00	0.00	3.32
948	5101	0.455410	CACACACCACAACCCACAAG	59.545	55.000	0.00	0.00	0.00	3.16
981	5134	0.723414	CGTACGTAGAGCGAGACCAA	59.277	55.000	7.22	0.00	44.77	3.67
983	5136	1.089920	TACGTAGAGCGAGACCAACC	58.910	55.000	0.00	0.00	44.77	3.77
984	5137	0.892358	ACGTAGAGCGAGACCAACCA	60.892	55.000	0.00	0.00	44.77	3.67
985	5138	0.456312	CGTAGAGCGAGACCAACCAC	60.456	60.000	0.00	0.00	44.77	4.16
986	5139	0.601558	GTAGAGCGAGACCAACCACA	59.398	55.000	0.00	0.00	0.00	4.17
987	5140	0.888619	TAGAGCGAGACCAACCACAG	59.111	55.000	0.00	0.00	0.00	3.66
988	5141	1.115930	AGAGCGAGACCAACCACAGT	61.116	55.000	0.00	0.00	0.00	3.55
1286	5446	4.892965	TGTGGTGGGTGCTGGTGC	62.893	66.667	0.00	0.00	40.20	5.01
1433	5593	2.516460	GCATGCTCAGCCTCAGGG	60.516	66.667	11.37	0.00	0.00	4.45
1762	7374	4.896979	CTCCTCCTCAAGGTGGGA	57.103	61.111	15.39	13.01	46.22	4.37
2005	7632	2.093021	ACCTTGCTGCCAAAATTGTTGT	60.093	40.909	0.00	0.00	0.00	3.32
2067	7701	0.886490	GTGACACTTGCACTCCCTGG	60.886	60.000	0.00	0.00	33.57	4.45
2090	7724	5.527951	GGCTTTCTAAATCCTACAGGCTTAC	59.472	44.000	0.00	0.00	34.44	2.34
2200	7834	8.912988	AGTGAAAACCATGAGAAAATTCAGTTA	58.087	29.630	0.00	0.00	0.00	2.24
2335	7972	2.722201	CCTCCTACACTCGCCACCC	61.722	68.421	0.00	0.00	0.00	4.61
2379	8022	7.448469	ACAATCCACTGTAATTGCTAAGTCTTT	59.552	33.333	12.45	0.00	36.54	2.52
2614	8299	8.850007	TTGTGGTGTTTATAGCAGTAACATTA	57.150	30.769	0.00	0.00	34.63	1.90
2708	8394	2.708216	TCTGGTCAAGCAAGTGAACA	57.292	45.000	3.21	3.21	42.96	3.18
2755	8467	6.012858	AGGTATATGGGTTTGTCAGAACTTCA	60.013	38.462	0.00	0.00	0.00	3.02
2764	8476	4.263018	TGTCAGAACTTCAGACAGATGG	57.737	45.455	11.82	0.00	37.87	3.51
2862	8574	0.167908	GGTGTGTGTGTGTGTGTGTG	59.832	55.000	0.00	0.00	0.00	3.82
2863	8575	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
2866	8578	0.035458	TGTGTGTGTGTGTGTGTGGA	59.965	50.000	0.00	0.00	0.00	4.02
3186	9055	1.627297	GGCGAGGGGTGATCCTCTTT	61.627	60.000	8.95	0.00	46.01	2.52
3187	9056	0.253327	GCGAGGGGTGATCCTCTTTT	59.747	55.000	8.95	0.00	46.01	2.27
3188	9057	1.340114	GCGAGGGGTGATCCTCTTTTT	60.340	52.381	8.95	0.00	46.01	1.94
3189	9058	2.633488	CGAGGGGTGATCCTCTTTTTC	58.367	52.381	8.95	0.00	46.01	2.29
3190	9059	2.237392	CGAGGGGTGATCCTCTTTTTCT	59.763	50.000	8.95	0.00	46.01	2.52
3191	9060	3.680196	CGAGGGGTGATCCTCTTTTTCTC	60.680	52.174	8.95	0.00	46.01	2.87
3192	9061	3.260205	AGGGGTGATCCTCTTTTTCTCA	58.740	45.455	0.00	0.00	42.96	3.27
3193	9062	3.265479	AGGGGTGATCCTCTTTTTCTCAG	59.735	47.826	0.00	0.00	42.96	3.35
3194	9063	3.264450	GGGGTGATCCTCTTTTTCTCAGA	59.736	47.826	0.00	0.00	35.33	3.27
3195	9064	4.263506	GGGGTGATCCTCTTTTTCTCAGAA	60.264	45.833	0.00	0.00	35.33	3.02
3196	9065	5.316987	GGGTGATCCTCTTTTTCTCAGAAA	58.683	41.667	0.00	0.00	0.00	2.52
3197	9066	5.770162	GGGTGATCCTCTTTTTCTCAGAAAA	59.230	40.000	8.60	8.60	0.00	2.29
3198	9067	6.265422	GGGTGATCCTCTTTTTCTCAGAAAAA	59.735	38.462	21.49	21.49	0.00	1.94
3217	9086	6.375455	AGAAAAATGCTCCTACACTTACCATG	59.625	38.462	0.00	0.00	0.00	3.66
3337	9219	7.984422	TTTTTACAGCTGATGAAGAAGATGA	57.016	32.000	23.35	0.00	34.01	2.92
3341	10986	4.699257	ACAGCTGATGAAGAAGATGAAACC	59.301	41.667	23.35	0.00	34.01	3.27

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
80	83	0.101759	CCTGATGGCATGGAAAAGCG	59.898	55.000	3.81	0.00	0.00	4.68
406	1003	2.230750	AGGTAAAGTCAGTCTACACGCC	59.769	50.000	0.00	0.00	0.00	5.68
451	1051	4.610945	GACAAAGGTGGTGTCATCAAAAG	58.389	43.478	0.00	0.00	44.00	2.27
619	1230	0.172578	CCCGACGACTGAGCATTACA	59.827	55.000	0.00	0.00	0.00	2.41
739	1351	2.107953	GCTGCCAAACCGCCAAAA	59.892	55.556	0.00	0.00	0.00	2.44
747	1359	0.323360	TGGATAGGGTGCTGCCAAAC	60.323	55.000	0.00	0.00	39.65	2.93
847	4992	8.040716	CATCAATCAATGCATCAGATAGCTAA	57.959	34.615	13.19	1.69	0.00	3.09
862	5007	6.954487	TGCAAGAGATAAGCATCAATCAAT	57.046	33.333	0.00	0.00	33.21	2.57
865	5010	5.048643	AGCATGCAAGAGATAAGCATCAATC	60.049	40.000	21.98	0.00	46.39	2.67
936	5089	0.102844	CTTGTGGCTTGTGGGTTGTG	59.897	55.000	0.00	0.00	0.00	3.33
937	5090	1.675720	GCTTGTGGCTTGTGGGTTGT	61.676	55.000	0.00	0.00	38.06	3.32
938	5091	1.067916	GCTTGTGGCTTGTGGGTTG	59.932	57.895	0.00	0.00	38.06	3.77
939	5092	0.975040	TTGCTTGTGGCTTGTGGGTT	60.975	50.000	0.00	0.00	42.39	4.11
940	5093	1.381056	TTGCTTGTGGCTTGTGGGT	60.381	52.632	0.00	0.00	42.39	4.51
941	5094	1.108727	TCTTGCTTGTGGCTTGTGGG	61.109	55.000	0.00	0.00	42.39	4.61
948	5101	1.497722	GTACGCTCTTGCTTGTGGC	59.502	57.895	0.00	0.00	42.22	5.01
983	5136	1.472201	CCATCCGATCTCACCACTGTG	60.472	57.143	0.00	0.00	44.18	3.66
984	5137	0.826715	CCATCCGATCTCACCACTGT	59.173	55.000	0.00	0.00	0.00	3.55
985	5138	0.531532	GCCATCCGATCTCACCACTG	60.532	60.000	0.00	0.00	0.00	3.66
986	5139	0.977627	TGCCATCCGATCTCACCACT	60.978	55.000	0.00	0.00	0.00	4.00
987	5140	0.107456	ATGCCATCCGATCTCACCAC	59.893	55.000	0.00	0.00	0.00	4.16
988	5141	0.394192	GATGCCATCCGATCTCACCA	59.606	55.000	0.00	0.00	0.00	4.17
991	5145	0.827507	TCCGATGCCATCCGATCTCA	60.828	55.000	0.00	0.00	0.00	3.27
1074	5228	2.811317	GCAACCGTCAGCTCCTCG	60.811	66.667	0.00	0.00	0.00	4.63
1301	5461	1.093159	GTTGCTTCCTCCTGCATCTG	58.907	55.000	0.00	0.00	39.07	2.90
1412	5572	2.271497	GAGGCTGAGCATGCACCT	59.729	61.111	21.98	19.69	0.00	4.00
1441	5601	3.715097	AGGAGGCTGCTGTGAGGC	61.715	66.667	8.08	0.00	38.81	4.70
1762	7374	2.507854	CGGGGCTCACGATACCCAT	61.508	63.158	9.20	0.00	46.21	4.00
2067	7701	6.037281	GTGTAAGCCTGTAGGATTTAGAAAGC	59.963	42.308	6.75	0.00	41.76	3.51
2090	7724	3.257933	GCTTCAAGCTCCACGGTG	58.742	61.111	0.71	0.00	38.45	4.94
2200	7834	6.823689	ACGGTAAGAACTGAAAAGCATATGAT	59.176	34.615	6.97	0.00	35.79	2.45
2379	8022	5.647225	TCAGCATGCACACATTGACTATTTA	59.353	36.000	21.98	0.00	32.87	1.40
2755	8467	9.354673	TCTAATTTTCTTTTGTTCCATCTGTCT	57.645	29.630	0.00	0.00	0.00	3.41
2781	8493	5.874810	AGCACGAGTACACATCAACATATTT	59.125	36.000	0.00	0.00	0.00	1.40
2862	8574	2.579738	GCGAAGACTCCCCTCCAC	59.420	66.667	0.00	0.00	0.00	4.02
2863	8575	2.683933	GGCGAAGACTCCCCTCCA	60.684	66.667	0.00	0.00	0.00	3.86
3186	9055	6.299141	AGTGTAGGAGCATTTTTCTGAGAAA	58.701	36.000	3.02	3.02	0.00	2.52
3187	9056	5.869579	AGTGTAGGAGCATTTTTCTGAGAA	58.130	37.500	0.00	0.00	0.00	2.87
3188	9057	5.489792	AGTGTAGGAGCATTTTTCTGAGA	57.510	39.130	0.00	0.00	0.00	3.27
3189	9058	6.092807	GGTAAGTGTAGGAGCATTTTTCTGAG	59.907	42.308	0.00	0.00	0.00	3.35
3190	9059	5.938125	GGTAAGTGTAGGAGCATTTTTCTGA	59.062	40.000	0.00	0.00	0.00	3.27
3191	9060	5.705441	TGGTAAGTGTAGGAGCATTTTTCTG	59.295	40.000	0.00	0.00	0.00	3.02
3192	9061	5.876357	TGGTAAGTGTAGGAGCATTTTTCT	58.124	37.500	0.00	0.00	0.00	2.52
3193	9062	6.374333	TCATGGTAAGTGTAGGAGCATTTTTC	59.626	38.462	0.00	0.00	0.00	2.29
3194	9063	6.245408	TCATGGTAAGTGTAGGAGCATTTTT	58.755	36.000	0.00	0.00	0.00	1.94
3195	9064	5.815581	TCATGGTAAGTGTAGGAGCATTTT	58.184	37.500	0.00	0.00	0.00	1.82
3196	9065	5.435686	TCATGGTAAGTGTAGGAGCATTT	57.564	39.130	0.00	0.00	0.00	2.32
3197	9066	5.636903	ATCATGGTAAGTGTAGGAGCATT	57.363	39.130	0.00	0.00	0.00	3.56
3198	9067	5.615289	GAATCATGGTAAGTGTAGGAGCAT	58.385	41.667	0.00	0.00	0.00	3.79
3337	9219	2.207590	GACGTTCTCCTTTGACGGTTT	58.792	47.619	0.00	0.00	0.00	3.27
3341	10986	1.189446	CGTTGACGTTCTCCTTTGACG	59.811	52.381	0.00	0.00	34.11	4.35

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.