Multiple sequence alignment - TraesCS3D01G364700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G364700 chr3D 100.000 4020 0 0 1 4020 478541009 478536990 0.000000e+00 7424.0
1 TraesCS3D01G364700 chr2A 88.413 1821 88 49 1729 3519 28676162 28674435 0.000000e+00 2080.0
2 TraesCS3D01G364700 chr2A 94.643 896 17 5 914 1793 28677111 28676231 0.000000e+00 1360.0
3 TraesCS3D01G364700 chr2A 95.522 335 14 1 3557 3891 28674451 28674118 5.910000e-148 534.0
4 TraesCS3D01G364700 chr2A 83.224 304 19 18 623 914 28677655 28677372 2.400000e-62 250.0
5 TraesCS3D01G364700 chr2A 93.043 115 8 0 2890 3004 11791809 11791923 6.910000e-38 169.0
6 TraesCS3D01G364700 chr2A 96.970 66 1 1 1728 1793 28676227 28676163 4.250000e-20 110.0
7 TraesCS3D01G364700 chr2A 98.113 53 1 0 3879 3931 28672796 28672744 4.280000e-15 93.5
8 TraesCS3D01G364700 chr2D 93.480 1181 39 11 2356 3519 26354617 26353458 0.000000e+00 1720.0
9 TraesCS3D01G364700 chr2D 86.871 1531 139 28 854 2362 11169526 11168036 0.000000e+00 1657.0
10 TraesCS3D01G364700 chr2D 94.378 925 20 14 831 1744 26366075 26365172 0.000000e+00 1391.0
11 TraesCS3D01G364700 chr2D 92.812 626 21 6 1745 2359 26365131 26364519 0.000000e+00 885.0
12 TraesCS3D01G364700 chr2D 87.615 759 85 5 967 1722 11309300 11308548 0.000000e+00 872.0
13 TraesCS3D01G364700 chr2D 85.897 780 101 4 981 1755 11389557 11390332 0.000000e+00 822.0
14 TraesCS3D01G364700 chr2D 85.640 766 100 9 967 1725 11314720 11313958 0.000000e+00 797.0
15 TraesCS3D01G364700 chr2D 94.709 378 19 1 3557 3934 26353474 26353098 1.610000e-163 586.0
16 TraesCS3D01G364700 chr2D 80.000 545 88 15 2651 3188 11307678 11307148 2.270000e-102 383.0
17 TraesCS3D01G364700 chr2D 86.538 312 28 10 3587 3898 11166638 11166341 8.330000e-87 331.0
18 TraesCS3D01G364700 chr2D 86.275 306 25 11 3587 3892 11130588 11130300 2.330000e-82 316.0
19 TraesCS3D01G364700 chr2D 84.395 314 37 3 842 1154 11233619 11233317 8.450000e-77 298.0
20 TraesCS3D01G364700 chr2D 85.778 225 6 15 614 838 26380308 26380110 8.750000e-52 215.0
21 TraesCS3D01G364700 chr2D 82.326 215 14 10 3310 3519 11298015 11297820 8.940000e-37 165.0
22 TraesCS3D01G364700 chr2B 86.936 1508 157 18 862 2362 16970992 16969518 0.000000e+00 1657.0
23 TraesCS3D01G364700 chr2B 83.333 1392 192 19 984 2358 17170259 17171627 0.000000e+00 1249.0
24 TraesCS3D01G364700 chr2B 85.528 767 99 12 967 1725 17492072 17491310 0.000000e+00 791.0
25 TraesCS3D01G364700 chr2B 84.485 767 107 10 967 1725 17162098 17162860 0.000000e+00 747.0
26 TraesCS3D01G364700 chr2B 87.500 432 53 1 2589 3020 17171807 17172237 7.760000e-137 497.0
27 TraesCS3D01G364700 chr2B 91.575 273 22 1 2120 2392 17392909 17393180 3.790000e-100 375.0
28 TraesCS3D01G364700 chr2B 84.422 398 37 8 1966 2362 17202140 17202513 6.350000e-98 368.0
29 TraesCS3D01G364700 chr2B 79.143 537 72 20 1827 2359 17092389 17091889 6.440000e-88 335.0
30 TraesCS3D01G364700 chr2B 81.418 409 70 6 2616 3022 17485889 17485485 3.000000e-86 329.0
31 TraesCS3D01G364700 chr2B 88.043 276 21 5 3660 3934 17080978 17080714 2.330000e-82 316.0
32 TraesCS3D01G364700 chr2B 82.745 255 41 3 1795 2046 17528958 17529212 1.450000e-54 224.0
33 TraesCS3D01G364700 chrUn 87.521 609 67 4 1760 2368 313025795 313026394 0.000000e+00 695.0
34 TraesCS3D01G364700 chrUn 85.317 504 63 8 1595 2089 12511468 12510967 9.970000e-141 510.0
35 TraesCS3D01G364700 chrUn 84.770 499 60 12 2647 3134 313026644 313027137 1.680000e-133 486.0
36 TraesCS3D01G364700 chrUn 90.308 227 21 1 2142 2368 12510940 12510715 3.040000e-76 296.0
37 TraesCS3D01G364700 chrUn 85.156 128 18 1 3692 3818 12520963 12520836 3.260000e-26 130.0
38 TraesCS3D01G364700 chr7B 91.026 78 7 0 3943 4020 167744536 167744613 5.490000e-19 106.0
39 TraesCS3D01G364700 chr5A 80.451 133 14 7 3728 3851 320564935 320564806 1.540000e-14 91.6
40 TraesCS3D01G364700 chr3B 88.608 79 4 5 3755 3832 492624209 492624283 1.540000e-14 91.6
41 TraesCS3D01G364700 chr3B 100.000 28 0 0 3807 3834 732913167 732913194 7.000000e-03 52.8
42 TraesCS3D01G364700 chr1D 85.714 70 7 3 3787 3856 141544670 141544736 2.000000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G364700 chr3D 478536990 478541009 4019 True 7424.000000 7424 100.000000 1 4020 1 chr3D.!!$R1 4019
1 TraesCS3D01G364700 chr2A 28672744 28677655 4911 True 737.916667 2080 92.814167 623 3931 6 chr2A.!!$R1 3308
2 TraesCS3D01G364700 chr2D 26353098 26354617 1519 True 1153.000000 1720 94.094500 2356 3934 2 chr2D.!!$R8 1578
3 TraesCS3D01G364700 chr2D 26364519 26366075 1556 True 1138.000000 1391 93.595000 831 2359 2 chr2D.!!$R9 1528
4 TraesCS3D01G364700 chr2D 11166341 11169526 3185 True 994.000000 1657 86.704500 854 3898 2 chr2D.!!$R6 3044
5 TraesCS3D01G364700 chr2D 11389557 11390332 775 False 822.000000 822 85.897000 981 1755 1 chr2D.!!$F1 774
6 TraesCS3D01G364700 chr2D 11313958 11314720 762 True 797.000000 797 85.640000 967 1725 1 chr2D.!!$R4 758
7 TraesCS3D01G364700 chr2D 11307148 11309300 2152 True 627.500000 872 83.807500 967 3188 2 chr2D.!!$R7 2221
8 TraesCS3D01G364700 chr2B 16969518 16970992 1474 True 1657.000000 1657 86.936000 862 2362 1 chr2B.!!$R1 1500
9 TraesCS3D01G364700 chr2B 17170259 17172237 1978 False 873.000000 1249 85.416500 984 3020 2 chr2B.!!$F5 2036
10 TraesCS3D01G364700 chr2B 17491310 17492072 762 True 791.000000 791 85.528000 967 1725 1 chr2B.!!$R5 758
11 TraesCS3D01G364700 chr2B 17162098 17162860 762 False 747.000000 747 84.485000 967 1725 1 chr2B.!!$F1 758
12 TraesCS3D01G364700 chr2B 17091889 17092389 500 True 335.000000 335 79.143000 1827 2359 1 chr2B.!!$R3 532
13 TraesCS3D01G364700 chrUn 313025795 313027137 1342 False 590.500000 695 86.145500 1760 3134 2 chrUn.!!$F1 1374
14 TraesCS3D01G364700 chrUn 12510715 12511468 753 True 403.000000 510 87.812500 1595 2368 2 chrUn.!!$R2 773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
479 480 0.106419 TGAAAAACCCCCGCTCAAGT 60.106 50.0 0.0 0.0 0.0 3.16 F
2453 3039 0.105760 ATTTGCCCTGGTTGTGTCCA 60.106 50.0 0.0 0.0 36.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2454 3040 0.114954 ACCACCTGCCATTGGACATT 59.885 50.0 6.95 0.0 36.28 2.71 R
3970 6362 0.035820 TTATGTCGTCCTGCCCAACC 60.036 55.0 0.00 0.0 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.046023 TGCGCCACTGCAGCTATT 60.046 55.556 15.27 0.00 40.62 1.73
21 22 1.675310 TGCGCCACTGCAGCTATTT 60.675 52.632 15.27 0.00 40.62 1.40
22 23 1.243342 TGCGCCACTGCAGCTATTTT 61.243 50.000 15.27 0.00 40.62 1.82
23 24 0.109132 GCGCCACTGCAGCTATTTTT 60.109 50.000 15.27 0.00 37.32 1.94
24 25 1.900237 CGCCACTGCAGCTATTTTTC 58.100 50.000 15.27 0.00 37.32 2.29
25 26 1.470098 CGCCACTGCAGCTATTTTTCT 59.530 47.619 15.27 0.00 37.32 2.52
26 27 2.677836 CGCCACTGCAGCTATTTTTCTA 59.322 45.455 15.27 0.00 37.32 2.10
27 28 3.313526 CGCCACTGCAGCTATTTTTCTAT 59.686 43.478 15.27 0.00 37.32 1.98
28 29 4.201950 CGCCACTGCAGCTATTTTTCTATT 60.202 41.667 15.27 0.00 37.32 1.73
29 30 5.039333 GCCACTGCAGCTATTTTTCTATTG 58.961 41.667 15.27 0.00 37.47 1.90
30 31 5.393461 GCCACTGCAGCTATTTTTCTATTGT 60.393 40.000 15.27 0.00 37.47 2.71
31 32 6.032094 CCACTGCAGCTATTTTTCTATTGTG 58.968 40.000 15.27 0.00 0.00 3.33
32 33 6.349611 CCACTGCAGCTATTTTTCTATTGTGT 60.350 38.462 15.27 0.00 0.00 3.72
33 34 6.525628 CACTGCAGCTATTTTTCTATTGTGTG 59.474 38.462 15.27 0.00 0.00 3.82
34 35 6.207417 ACTGCAGCTATTTTTCTATTGTGTGT 59.793 34.615 15.27 0.00 0.00 3.72
35 36 6.980593 TGCAGCTATTTTTCTATTGTGTGTT 58.019 32.000 0.00 0.00 0.00 3.32
36 37 7.432869 TGCAGCTATTTTTCTATTGTGTGTTT 58.567 30.769 0.00 0.00 0.00 2.83
37 38 7.381948 TGCAGCTATTTTTCTATTGTGTGTTTG 59.618 33.333 0.00 0.00 0.00 2.93
38 39 7.382218 GCAGCTATTTTTCTATTGTGTGTTTGT 59.618 33.333 0.00 0.00 0.00 2.83
39 40 9.248291 CAGCTATTTTTCTATTGTGTGTTTGTT 57.752 29.630 0.00 0.00 0.00 2.83
40 41 9.816354 AGCTATTTTTCTATTGTGTGTTTGTTT 57.184 25.926 0.00 0.00 0.00 2.83
45 46 9.869844 TTTTTCTATTGTGTGTTTGTTTTGTTG 57.130 25.926 0.00 0.00 0.00 3.33
46 47 8.594881 TTTCTATTGTGTGTTTGTTTTGTTGT 57.405 26.923 0.00 0.00 0.00 3.32
47 48 7.804614 TCTATTGTGTGTTTGTTTTGTTGTC 57.195 32.000 0.00 0.00 0.00 3.18
48 49 7.598278 TCTATTGTGTGTTTGTTTTGTTGTCT 58.402 30.769 0.00 0.00 0.00 3.41
49 50 8.085296 TCTATTGTGTGTTTGTTTTGTTGTCTT 58.915 29.630 0.00 0.00 0.00 3.01
50 51 5.896922 TGTGTGTTTGTTTTGTTGTCTTG 57.103 34.783 0.00 0.00 0.00 3.02
51 52 4.210120 TGTGTGTTTGTTTTGTTGTCTTGC 59.790 37.500 0.00 0.00 0.00 4.01
52 53 4.447389 GTGTGTTTGTTTTGTTGTCTTGCT 59.553 37.500 0.00 0.00 0.00 3.91
53 54 5.050431 GTGTGTTTGTTTTGTTGTCTTGCTT 60.050 36.000 0.00 0.00 0.00 3.91
54 55 5.525378 TGTGTTTGTTTTGTTGTCTTGCTTT 59.475 32.000 0.00 0.00 0.00 3.51
55 56 6.037610 TGTGTTTGTTTTGTTGTCTTGCTTTT 59.962 30.769 0.00 0.00 0.00 2.27
56 57 6.909895 GTGTTTGTTTTGTTGTCTTGCTTTTT 59.090 30.769 0.00 0.00 0.00 1.94
57 58 7.111455 GTGTTTGTTTTGTTGTCTTGCTTTTTC 59.889 33.333 0.00 0.00 0.00 2.29
58 59 5.854431 TGTTTTGTTGTCTTGCTTTTTCC 57.146 34.783 0.00 0.00 0.00 3.13
59 60 5.546526 TGTTTTGTTGTCTTGCTTTTTCCT 58.453 33.333 0.00 0.00 0.00 3.36
60 61 5.994668 TGTTTTGTTGTCTTGCTTTTTCCTT 59.005 32.000 0.00 0.00 0.00 3.36
61 62 6.484977 TGTTTTGTTGTCTTGCTTTTTCCTTT 59.515 30.769 0.00 0.00 0.00 3.11
62 63 6.720012 TTTGTTGTCTTGCTTTTTCCTTTC 57.280 33.333 0.00 0.00 0.00 2.62
63 64 5.659440 TGTTGTCTTGCTTTTTCCTTTCT 57.341 34.783 0.00 0.00 0.00 2.52
64 65 5.410067 TGTTGTCTTGCTTTTTCCTTTCTG 58.590 37.500 0.00 0.00 0.00 3.02
65 66 4.654091 TGTCTTGCTTTTTCCTTTCTGG 57.346 40.909 0.00 0.00 37.10 3.86
66 67 3.384467 TGTCTTGCTTTTTCCTTTCTGGG 59.616 43.478 0.00 0.00 36.20 4.45
67 68 3.384789 GTCTTGCTTTTTCCTTTCTGGGT 59.615 43.478 0.00 0.00 36.20 4.51
68 69 4.030216 TCTTGCTTTTTCCTTTCTGGGTT 58.970 39.130 0.00 0.00 36.20 4.11
69 70 4.469586 TCTTGCTTTTTCCTTTCTGGGTTT 59.530 37.500 0.00 0.00 36.20 3.27
70 71 4.835284 TGCTTTTTCCTTTCTGGGTTTT 57.165 36.364 0.00 0.00 36.20 2.43
71 72 5.941555 TGCTTTTTCCTTTCTGGGTTTTA 57.058 34.783 0.00 0.00 36.20 1.52
72 73 6.493189 TGCTTTTTCCTTTCTGGGTTTTAT 57.507 33.333 0.00 0.00 36.20 1.40
73 74 6.894682 TGCTTTTTCCTTTCTGGGTTTTATT 58.105 32.000 0.00 0.00 36.20 1.40
74 75 7.342581 TGCTTTTTCCTTTCTGGGTTTTATTT 58.657 30.769 0.00 0.00 36.20 1.40
75 76 7.497579 TGCTTTTTCCTTTCTGGGTTTTATTTC 59.502 33.333 0.00 0.00 36.20 2.17
76 77 7.715249 GCTTTTTCCTTTCTGGGTTTTATTTCT 59.285 33.333 0.00 0.00 36.20 2.52
77 78 9.613428 CTTTTTCCTTTCTGGGTTTTATTTCTT 57.387 29.630 0.00 0.00 36.20 2.52
78 79 9.967451 TTTTTCCTTTCTGGGTTTTATTTCTTT 57.033 25.926 0.00 0.00 36.20 2.52
79 80 9.607988 TTTTCCTTTCTGGGTTTTATTTCTTTC 57.392 29.630 0.00 0.00 36.20 2.62
80 81 8.547481 TTCCTTTCTGGGTTTTATTTCTTTCT 57.453 30.769 0.00 0.00 36.20 2.52
81 82 8.178313 TCCTTTCTGGGTTTTATTTCTTTCTC 57.822 34.615 0.00 0.00 36.20 2.87
82 83 8.004801 TCCTTTCTGGGTTTTATTTCTTTCTCT 58.995 33.333 0.00 0.00 36.20 3.10
83 84 8.642432 CCTTTCTGGGTTTTATTTCTTTCTCTT 58.358 33.333 0.00 0.00 0.00 2.85
109 110 8.925161 TTTTTCTAGTTTGTTGTTTCTCATGG 57.075 30.769 0.00 0.00 0.00 3.66
110 111 7.639113 TTTCTAGTTTGTTGTTTCTCATGGT 57.361 32.000 0.00 0.00 0.00 3.55
111 112 7.639113 TTCTAGTTTGTTGTTTCTCATGGTT 57.361 32.000 0.00 0.00 0.00 3.67
112 113 7.639113 TCTAGTTTGTTGTTTCTCATGGTTT 57.361 32.000 0.00 0.00 0.00 3.27
113 114 8.062065 TCTAGTTTGTTGTTTCTCATGGTTTT 57.938 30.769 0.00 0.00 0.00 2.43
114 115 8.527810 TCTAGTTTGTTGTTTCTCATGGTTTTT 58.472 29.630 0.00 0.00 0.00 1.94
135 136 4.519540 TTTGCACCTCTCCATTTTAAGC 57.480 40.909 0.00 0.00 0.00 3.09
136 137 3.439857 TGCACCTCTCCATTTTAAGCT 57.560 42.857 0.00 0.00 0.00 3.74
137 138 4.568072 TGCACCTCTCCATTTTAAGCTA 57.432 40.909 0.00 0.00 0.00 3.32
138 139 5.116084 TGCACCTCTCCATTTTAAGCTAT 57.884 39.130 0.00 0.00 0.00 2.97
139 140 6.247229 TGCACCTCTCCATTTTAAGCTATA 57.753 37.500 0.00 0.00 0.00 1.31
140 141 6.055588 TGCACCTCTCCATTTTAAGCTATAC 58.944 40.000 0.00 0.00 0.00 1.47
141 142 6.126768 TGCACCTCTCCATTTTAAGCTATACT 60.127 38.462 0.00 0.00 0.00 2.12
142 143 7.070696 TGCACCTCTCCATTTTAAGCTATACTA 59.929 37.037 0.00 0.00 0.00 1.82
143 144 8.097662 GCACCTCTCCATTTTAAGCTATACTAT 58.902 37.037 0.00 0.00 0.00 2.12
185 186 9.950680 TTCAATGATTTTTCTTCAAGTACTCAC 57.049 29.630 0.00 0.00 0.00 3.51
186 187 8.282592 TCAATGATTTTTCTTCAAGTACTCACG 58.717 33.333 0.00 0.00 0.00 4.35
187 188 6.539649 TGATTTTTCTTCAAGTACTCACGG 57.460 37.500 0.00 0.00 0.00 4.94
188 189 6.285224 TGATTTTTCTTCAAGTACTCACGGA 58.715 36.000 0.00 0.00 0.00 4.69
189 190 6.764085 TGATTTTTCTTCAAGTACTCACGGAA 59.236 34.615 0.00 0.00 0.00 4.30
190 191 5.978934 TTTTCTTCAAGTACTCACGGAAC 57.021 39.130 0.00 0.00 0.00 3.62
191 192 4.659111 TTCTTCAAGTACTCACGGAACA 57.341 40.909 0.00 0.00 0.00 3.18
192 193 4.866508 TCTTCAAGTACTCACGGAACAT 57.133 40.909 0.00 0.00 0.00 2.71
193 194 5.209818 TCTTCAAGTACTCACGGAACATT 57.790 39.130 0.00 0.00 0.00 2.71
194 195 5.607477 TCTTCAAGTACTCACGGAACATTT 58.393 37.500 0.00 0.00 0.00 2.32
195 196 6.053005 TCTTCAAGTACTCACGGAACATTTT 58.947 36.000 0.00 0.00 0.00 1.82
196 197 6.540914 TCTTCAAGTACTCACGGAACATTTTT 59.459 34.615 0.00 0.00 0.00 1.94
197 198 7.711772 TCTTCAAGTACTCACGGAACATTTTTA 59.288 33.333 0.00 0.00 0.00 1.52
198 199 7.972832 TCAAGTACTCACGGAACATTTTTAT 57.027 32.000 0.00 0.00 0.00 1.40
199 200 9.491675 TTCAAGTACTCACGGAACATTTTTATA 57.508 29.630 0.00 0.00 0.00 0.98
200 201 9.491675 TCAAGTACTCACGGAACATTTTTATAA 57.508 29.630 0.00 0.00 0.00 0.98
330 331 7.151999 ACACTGAACATTTTCTTAACACACA 57.848 32.000 0.00 0.00 32.36 3.72
331 332 7.027161 ACACTGAACATTTTCTTAACACACAC 58.973 34.615 0.00 0.00 32.36 3.82
332 333 7.094377 ACACTGAACATTTTCTTAACACACACT 60.094 33.333 0.00 0.00 32.36 3.55
333 334 8.394877 CACTGAACATTTTCTTAACACACACTA 58.605 33.333 0.00 0.00 32.36 2.74
334 335 8.952278 ACTGAACATTTTCTTAACACACACTAA 58.048 29.630 0.00 0.00 32.36 2.24
335 336 9.781834 CTGAACATTTTCTTAACACACACTAAA 57.218 29.630 0.00 0.00 32.36 1.85
350 351 9.915629 ACACACACTAAATTTTTCTTAAACACA 57.084 25.926 0.00 0.00 0.00 3.72
352 353 9.915629 ACACACTAAATTTTTCTTAAACACACA 57.084 25.926 0.00 0.00 0.00 3.72
370 371 9.814899 AAACACACATCAAACATATTTTCAGAA 57.185 25.926 0.00 0.00 0.00 3.02
371 372 9.814899 AACACACATCAAACATATTTTCAGAAA 57.185 25.926 0.00 0.00 0.00 2.52
372 373 9.814899 ACACACATCAAACATATTTTCAGAAAA 57.185 25.926 10.80 10.80 34.41 2.29
409 410 5.459536 AATCAAAGAGAAAAGAACCCAGC 57.540 39.130 0.00 0.00 0.00 4.85
410 411 3.897239 TCAAAGAGAAAAGAACCCAGCA 58.103 40.909 0.00 0.00 0.00 4.41
411 412 4.277476 TCAAAGAGAAAAGAACCCAGCAA 58.723 39.130 0.00 0.00 0.00 3.91
412 413 4.339247 TCAAAGAGAAAAGAACCCAGCAAG 59.661 41.667 0.00 0.00 0.00 4.01
413 414 2.234143 AGAGAAAAGAACCCAGCAAGC 58.766 47.619 0.00 0.00 0.00 4.01
414 415 1.956477 GAGAAAAGAACCCAGCAAGCA 59.044 47.619 0.00 0.00 0.00 3.91
415 416 1.959282 AGAAAAGAACCCAGCAAGCAG 59.041 47.619 0.00 0.00 0.00 4.24
416 417 1.683385 GAAAAGAACCCAGCAAGCAGT 59.317 47.619 0.00 0.00 0.00 4.40
417 418 1.780503 AAAGAACCCAGCAAGCAGTT 58.219 45.000 0.00 0.00 0.00 3.16
418 419 1.780503 AAGAACCCAGCAAGCAGTTT 58.219 45.000 0.00 0.00 0.00 2.66
419 420 1.780503 AGAACCCAGCAAGCAGTTTT 58.219 45.000 0.00 0.00 0.00 2.43
420 421 2.110578 AGAACCCAGCAAGCAGTTTTT 58.889 42.857 0.00 0.00 0.00 1.94
421 422 2.101415 AGAACCCAGCAAGCAGTTTTTC 59.899 45.455 0.00 0.00 0.00 2.29
422 423 0.385390 ACCCAGCAAGCAGTTTTTCG 59.615 50.000 0.00 0.00 0.00 3.46
423 424 0.318955 CCCAGCAAGCAGTTTTTCGG 60.319 55.000 0.00 0.00 0.00 4.30
424 425 0.318955 CCAGCAAGCAGTTTTTCGGG 60.319 55.000 0.00 0.00 0.00 5.14
425 426 0.318955 CAGCAAGCAGTTTTTCGGGG 60.319 55.000 0.00 0.00 0.00 5.73
426 427 0.467290 AGCAAGCAGTTTTTCGGGGA 60.467 50.000 0.00 0.00 0.00 4.81
427 428 0.387565 GCAAGCAGTTTTTCGGGGAA 59.612 50.000 0.00 0.00 0.00 3.97
428 429 1.202475 GCAAGCAGTTTTTCGGGGAAA 60.202 47.619 0.00 0.00 0.00 3.13
429 430 2.740256 GCAAGCAGTTTTTCGGGGAAAA 60.740 45.455 0.00 0.00 39.36 2.29
430 431 3.526534 CAAGCAGTTTTTCGGGGAAAAA 58.473 40.909 11.12 11.12 45.38 1.94
474 475 6.553953 AAAAATATATGAAAAACCCCCGCT 57.446 33.333 0.00 0.00 0.00 5.52
475 476 5.784578 AAATATATGAAAAACCCCCGCTC 57.215 39.130 0.00 0.00 0.00 5.03
476 477 2.818751 ATATGAAAAACCCCCGCTCA 57.181 45.000 0.00 0.00 0.00 4.26
477 478 2.588464 TATGAAAAACCCCCGCTCAA 57.412 45.000 0.00 0.00 0.00 3.02
478 479 1.256812 ATGAAAAACCCCCGCTCAAG 58.743 50.000 0.00 0.00 0.00 3.02
479 480 0.106419 TGAAAAACCCCCGCTCAAGT 60.106 50.000 0.00 0.00 0.00 3.16
480 481 0.313987 GAAAAACCCCCGCTCAAGTG 59.686 55.000 0.00 0.00 0.00 3.16
481 482 0.106419 AAAAACCCCCGCTCAAGTGA 60.106 50.000 0.00 0.00 0.00 3.41
482 483 0.537371 AAAACCCCCGCTCAAGTGAG 60.537 55.000 3.84 3.84 44.75 3.51
493 494 1.742831 CTCAAGTGAGCTCGCTAGAGT 59.257 52.381 29.13 11.75 46.03 3.24
494 495 1.470494 TCAAGTGAGCTCGCTAGAGTG 59.530 52.381 29.13 22.38 46.03 3.51
495 496 0.814457 AAGTGAGCTCGCTAGAGTGG 59.186 55.000 29.13 0.00 46.03 4.00
496 497 1.034838 AGTGAGCTCGCTAGAGTGGG 61.035 60.000 27.97 0.00 46.03 4.61
499 500 4.577246 GCTCGCTAGAGTGGGCCG 62.577 72.222 3.44 0.00 45.78 6.13
500 501 2.829003 CTCGCTAGAGTGGGCCGA 60.829 66.667 0.00 0.00 39.60 5.54
501 502 2.829003 TCGCTAGAGTGGGCCGAG 60.829 66.667 0.00 0.00 0.00 4.63
502 503 4.577246 CGCTAGAGTGGGCCGAGC 62.577 72.222 0.00 1.46 0.00 5.03
513 514 3.134127 GCCGAGCCATTTTCCGCT 61.134 61.111 0.00 0.00 38.27 5.52
514 515 3.102097 CCGAGCCATTTTCCGCTC 58.898 61.111 0.00 0.00 46.52 5.03
518 519 3.346426 AGCCATTTTCCGCTCACTT 57.654 47.368 0.00 0.00 0.00 3.16
519 520 0.883833 AGCCATTTTCCGCTCACTTG 59.116 50.000 0.00 0.00 0.00 3.16
520 521 0.733909 GCCATTTTCCGCTCACTTGC 60.734 55.000 0.00 0.00 0.00 4.01
521 522 0.597568 CCATTTTCCGCTCACTTGCA 59.402 50.000 0.00 0.00 0.00 4.08
522 523 1.401931 CCATTTTCCGCTCACTTGCAG 60.402 52.381 0.00 0.00 0.00 4.41
523 524 0.883833 ATTTTCCGCTCACTTGCAGG 59.116 50.000 0.00 0.00 0.00 4.85
524 525 1.795170 TTTTCCGCTCACTTGCAGGC 61.795 55.000 0.00 0.00 0.00 4.85
527 528 4.081030 CGCTCACTTGCAGGCGTG 62.081 66.667 1.01 1.01 42.23 5.34
528 529 2.666190 GCTCACTTGCAGGCGTGA 60.666 61.111 11.29 12.86 37.79 4.35
545 546 2.286294 CGTGAGCTGGACTATTTGATGC 59.714 50.000 0.00 0.00 0.00 3.91
546 547 2.615912 GTGAGCTGGACTATTTGATGCC 59.384 50.000 0.00 0.00 0.00 4.40
547 548 2.239402 TGAGCTGGACTATTTGATGCCA 59.761 45.455 0.00 0.00 0.00 4.92
548 549 3.282021 GAGCTGGACTATTTGATGCCAA 58.718 45.455 0.00 0.00 0.00 4.52
549 550 3.887716 GAGCTGGACTATTTGATGCCAAT 59.112 43.478 0.00 0.00 31.46 3.16
550 551 3.635373 AGCTGGACTATTTGATGCCAATG 59.365 43.478 0.00 0.00 31.46 2.82
551 552 3.243636 GCTGGACTATTTGATGCCAATGG 60.244 47.826 0.00 0.00 31.46 3.16
552 553 3.298619 TGGACTATTTGATGCCAATGGG 58.701 45.455 0.00 0.00 31.46 4.00
578 579 6.884472 TCCAATAGGAGGACTCAATACAAA 57.116 37.500 1.32 0.00 39.61 2.83
579 580 6.889198 TCCAATAGGAGGACTCAATACAAAG 58.111 40.000 1.32 0.00 39.61 2.77
580 581 6.058183 CCAATAGGAGGACTCAATACAAAGG 58.942 44.000 1.32 0.00 36.89 3.11
581 582 6.353082 CCAATAGGAGGACTCAATACAAAGGT 60.353 42.308 1.32 0.00 36.89 3.50
582 583 4.828072 AGGAGGACTCAATACAAAGGTC 57.172 45.455 1.32 0.00 0.00 3.85
583 584 4.168101 AGGAGGACTCAATACAAAGGTCA 58.832 43.478 1.32 0.00 0.00 4.02
584 585 4.597507 AGGAGGACTCAATACAAAGGTCAA 59.402 41.667 1.32 0.00 0.00 3.18
585 586 5.073144 AGGAGGACTCAATACAAAGGTCAAA 59.927 40.000 1.32 0.00 0.00 2.69
586 587 5.181433 GGAGGACTCAATACAAAGGTCAAAC 59.819 44.000 1.32 0.00 0.00 2.93
587 588 5.690865 AGGACTCAATACAAAGGTCAAACA 58.309 37.500 0.00 0.00 0.00 2.83
588 589 6.126409 AGGACTCAATACAAAGGTCAAACAA 58.874 36.000 0.00 0.00 0.00 2.83
589 590 6.605594 AGGACTCAATACAAAGGTCAAACAAA 59.394 34.615 0.00 0.00 0.00 2.83
590 591 6.695713 GGACTCAATACAAAGGTCAAACAAAC 59.304 38.462 0.00 0.00 0.00 2.93
591 592 7.164230 ACTCAATACAAAGGTCAAACAAACA 57.836 32.000 0.00 0.00 0.00 2.83
592 593 7.257722 ACTCAATACAAAGGTCAAACAAACAG 58.742 34.615 0.00 0.00 0.00 3.16
593 594 7.122055 ACTCAATACAAAGGTCAAACAAACAGA 59.878 33.333 0.00 0.00 0.00 3.41
594 595 7.254852 TCAATACAAAGGTCAAACAAACAGAC 58.745 34.615 0.00 0.00 0.00 3.51
595 596 6.767524 ATACAAAGGTCAAACAAACAGACA 57.232 33.333 0.00 0.00 34.04 3.41
596 597 5.461032 ACAAAGGTCAAACAAACAGACAA 57.539 34.783 0.00 0.00 34.04 3.18
597 598 5.227152 ACAAAGGTCAAACAAACAGACAAC 58.773 37.500 0.00 0.00 34.04 3.32
598 599 4.450082 AAGGTCAAACAAACAGACAACC 57.550 40.909 0.00 0.00 34.04 3.77
599 600 3.697166 AGGTCAAACAAACAGACAACCT 58.303 40.909 0.00 0.00 34.04 3.50
600 601 4.850680 AGGTCAAACAAACAGACAACCTA 58.149 39.130 0.00 0.00 34.22 3.08
601 602 4.638865 AGGTCAAACAAACAGACAACCTAC 59.361 41.667 0.00 0.00 34.22 3.18
602 603 4.638865 GGTCAAACAAACAGACAACCTACT 59.361 41.667 0.00 0.00 34.04 2.57
603 604 5.220796 GGTCAAACAAACAGACAACCTACTC 60.221 44.000 0.00 0.00 34.04 2.59
604 605 5.585047 GTCAAACAAACAGACAACCTACTCT 59.415 40.000 0.00 0.00 32.68 3.24
605 606 6.093633 GTCAAACAAACAGACAACCTACTCTT 59.906 38.462 0.00 0.00 32.68 2.85
606 607 6.657541 TCAAACAAACAGACAACCTACTCTTT 59.342 34.615 0.00 0.00 0.00 2.52
607 608 6.679327 AACAAACAGACAACCTACTCTTTC 57.321 37.500 0.00 0.00 0.00 2.62
608 609 5.123936 ACAAACAGACAACCTACTCTTTCC 58.876 41.667 0.00 0.00 0.00 3.13
609 610 5.104485 ACAAACAGACAACCTACTCTTTCCT 60.104 40.000 0.00 0.00 0.00 3.36
610 611 6.099269 ACAAACAGACAACCTACTCTTTCCTA 59.901 38.462 0.00 0.00 0.00 2.94
611 612 5.725325 ACAGACAACCTACTCTTTCCTAC 57.275 43.478 0.00 0.00 0.00 3.18
612 613 5.395611 ACAGACAACCTACTCTTTCCTACT 58.604 41.667 0.00 0.00 0.00 2.57
613 614 5.839606 ACAGACAACCTACTCTTTCCTACTT 59.160 40.000 0.00 0.00 0.00 2.24
614 615 7.008941 ACAGACAACCTACTCTTTCCTACTTA 58.991 38.462 0.00 0.00 0.00 2.24
615 616 7.039853 ACAGACAACCTACTCTTTCCTACTTAC 60.040 40.741 0.00 0.00 0.00 2.34
616 617 7.177041 CAGACAACCTACTCTTTCCTACTTACT 59.823 40.741 0.00 0.00 0.00 2.24
617 618 8.389366 AGACAACCTACTCTTTCCTACTTACTA 58.611 37.037 0.00 0.00 0.00 1.82
618 619 8.578448 ACAACCTACTCTTTCCTACTTACTAG 57.422 38.462 0.00 0.00 0.00 2.57
619 620 7.614974 ACAACCTACTCTTTCCTACTTACTAGG 59.385 40.741 0.00 0.00 43.54 3.02
620 621 6.671605 ACCTACTCTTTCCTACTTACTAGGG 58.328 44.000 0.00 0.00 42.51 3.53
621 622 6.449696 ACCTACTCTTTCCTACTTACTAGGGA 59.550 42.308 0.00 0.00 42.51 4.20
662 663 5.576128 CCCCCTCTCCAAAACTGTAAAATA 58.424 41.667 0.00 0.00 0.00 1.40
689 690 6.657966 AGTTTTTAGTACTAATGTCAAGGCCC 59.342 38.462 15.92 0.00 0.00 5.80
703 704 2.991540 GCCCAGCCCAACCACTTC 60.992 66.667 0.00 0.00 0.00 3.01
718 719 1.672356 CTTCCAGCCCAGTCCAACG 60.672 63.158 0.00 0.00 0.00 4.10
719 720 3.842925 TTCCAGCCCAGTCCAACGC 62.843 63.158 0.00 0.00 0.00 4.84
739 740 3.786516 CATATTTGCATGACACTGGCA 57.213 42.857 0.00 0.00 35.41 4.92
740 741 3.702330 CATATTTGCATGACACTGGCAG 58.298 45.455 14.16 14.16 38.97 4.85
741 742 0.245539 ATTTGCATGACACTGGCAGC 59.754 50.000 15.89 0.00 38.97 5.25
742 743 1.808531 TTTGCATGACACTGGCAGCC 61.809 55.000 15.89 3.66 38.97 4.85
743 744 3.446570 GCATGACACTGGCAGCCC 61.447 66.667 15.89 4.37 0.00 5.19
744 745 2.034532 CATGACACTGGCAGCCCA 59.965 61.111 15.89 10.39 39.32 5.36
777 778 8.713271 CCTCTATTTATTTCTAGATTCGCCAAC 58.287 37.037 0.00 0.00 0.00 3.77
778 779 9.482627 CTCTATTTATTTCTAGATTCGCCAACT 57.517 33.333 0.00 0.00 0.00 3.16
779 780 9.477484 TCTATTTATTTCTAGATTCGCCAACTC 57.523 33.333 0.00 0.00 0.00 3.01
780 781 6.583912 TTTATTTCTAGATTCGCCAACTCG 57.416 37.500 0.00 0.00 0.00 4.18
801 804 3.489398 CGTGGTTGTAGATGCTCCTAGAC 60.489 52.174 0.00 0.00 0.00 2.59
803 806 3.701542 TGGTTGTAGATGCTCCTAGACAG 59.298 47.826 0.00 0.00 0.00 3.51
805 808 1.950216 TGTAGATGCTCCTAGACAGCG 59.050 52.381 8.60 0.00 40.01 5.18
809 812 1.266718 GATGCTCCTAGACAGCGAGAG 59.733 57.143 8.60 0.00 40.01 3.20
965 1248 4.579384 CAACCCCGGTGCCACTGT 62.579 66.667 0.00 0.00 0.00 3.55
1209 1507 2.880879 CACGCCGTCATCGAGGTG 60.881 66.667 0.00 0.00 43.24 4.00
1764 2269 9.199982 CTTCTTGCTGTTGTTTCATATTCATTT 57.800 29.630 0.00 0.00 0.00 2.32
2213 2791 2.682856 TGCCAATTTGACCGCTCTATTC 59.317 45.455 0.00 0.00 0.00 1.75
2368 2946 1.213182 TGTGGAGGTAAGTGCACCAAA 59.787 47.619 14.63 0.00 41.40 3.28
2450 3036 1.895131 GATGATTTGCCCTGGTTGTGT 59.105 47.619 0.00 0.00 0.00 3.72
2451 3037 1.327303 TGATTTGCCCTGGTTGTGTC 58.673 50.000 0.00 0.00 0.00 3.67
2452 3038 0.603065 GATTTGCCCTGGTTGTGTCC 59.397 55.000 0.00 0.00 0.00 4.02
2453 3039 0.105760 ATTTGCCCTGGTTGTGTCCA 60.106 50.000 0.00 0.00 36.00 4.02
2454 3040 0.324738 TTTGCCCTGGTTGTGTCCAA 60.325 50.000 0.00 0.00 37.01 3.53
2455 3041 0.324738 TTGCCCTGGTTGTGTCCAAA 60.325 50.000 0.00 0.00 37.01 3.28
2456 3042 0.105760 TGCCCTGGTTGTGTCCAAAT 60.106 50.000 0.00 0.00 37.01 2.32
2457 3043 0.318120 GCCCTGGTTGTGTCCAAATG 59.682 55.000 0.00 0.00 37.01 2.32
2595 3275 5.661458 ACACCTGAAACATAGGTAGAATCG 58.339 41.667 0.00 0.00 46.55 3.34
2671 3351 0.835971 TGTTGGTGCAGGAGAGGCTA 60.836 55.000 0.00 0.00 0.00 3.93
2739 3419 1.415659 CATTGGGCCTGTAGAGAGAGG 59.584 57.143 4.53 0.00 39.22 3.69
2856 3536 1.485124 TCTAGCCTTCTCGCCATCAA 58.515 50.000 0.00 0.00 0.00 2.57
2926 3607 0.320771 CCTTCGGGATATGCTTCGGG 60.321 60.000 0.00 0.00 37.25 5.14
2951 3632 1.762460 CAGGGGTATGAGCCGAGGT 60.762 63.158 0.00 0.00 36.39 3.85
3116 3814 5.391312 ACATGTCAAAGAATAAACCCTGC 57.609 39.130 0.00 0.00 0.00 4.85
3142 3840 7.750947 AGTATTACTTATTGGGTCAGGAAGT 57.249 36.000 0.00 0.00 34.78 3.01
3143 3841 8.849543 AGTATTACTTATTGGGTCAGGAAGTA 57.150 34.615 0.00 0.00 32.75 2.24
3144 3842 8.925338 AGTATTACTTATTGGGTCAGGAAGTAG 58.075 37.037 0.00 0.00 34.88 2.57
3145 3843 7.750947 ATTACTTATTGGGTCAGGAAGTAGT 57.249 36.000 0.00 0.00 34.88 2.73
3146 3844 8.849543 ATTACTTATTGGGTCAGGAAGTAGTA 57.150 34.615 0.00 0.00 34.88 1.82
3147 3845 8.669055 TTACTTATTGGGTCAGGAAGTAGTAA 57.331 34.615 0.00 0.00 34.88 2.24
3175 3873 4.640201 TCTGAATAAACTAGCAATGTGGCC 59.360 41.667 0.00 0.00 0.00 5.36
3176 3874 4.599041 TGAATAAACTAGCAATGTGGCCT 58.401 39.130 3.32 0.00 0.00 5.19
3177 3875 5.016173 TGAATAAACTAGCAATGTGGCCTT 58.984 37.500 3.32 0.00 0.00 4.35
3247 3970 2.070650 ACGCCCATCTCCCCCTTAC 61.071 63.158 0.00 0.00 0.00 2.34
3340 4063 2.176546 CGCACCAGCACCGATTTG 59.823 61.111 0.00 0.00 42.27 2.32
3343 4066 0.031994 GCACCAGCACCGATTTGTTT 59.968 50.000 0.00 0.00 41.58 2.83
3510 4529 4.214971 AGTTTCTGCATACAAGACTGCAAG 59.785 41.667 0.00 0.00 46.87 4.01
3548 4567 8.419076 TTTTTCTGTTTGAGATTGCTTTTACC 57.581 30.769 0.00 0.00 0.00 2.85
3549 4568 6.707440 TTCTGTTTGAGATTGCTTTTACCA 57.293 33.333 0.00 0.00 0.00 3.25
3550 4569 6.072112 TCTGTTTGAGATTGCTTTTACCAC 57.928 37.500 0.00 0.00 0.00 4.16
3551 4570 4.854399 TGTTTGAGATTGCTTTTACCACG 58.146 39.130 0.00 0.00 0.00 4.94
3552 4571 4.336993 TGTTTGAGATTGCTTTTACCACGT 59.663 37.500 0.00 0.00 0.00 4.49
3553 4572 4.481930 TTGAGATTGCTTTTACCACGTG 57.518 40.909 9.08 9.08 0.00 4.49
3554 4573 2.811431 TGAGATTGCTTTTACCACGTGG 59.189 45.455 32.83 32.83 42.17 4.94
3564 4583 3.333414 CCACGTGGTGACTGCAAG 58.667 61.111 26.95 0.00 42.29 4.01
3624 4682 2.103263 AGGGCTTCTAAACTATGGCGAG 59.897 50.000 0.00 0.00 0.00 5.03
3638 4696 0.522076 GGCGAGGACACTACGTTACG 60.522 60.000 2.19 2.19 0.00 3.18
3663 4721 1.086067 AACGACATCCGCAGCATCAG 61.086 55.000 0.00 0.00 43.32 2.90
3855 4913 4.101430 TCTGGGCTTCAAAAGAAAAAGCAT 59.899 37.500 8.40 0.00 45.63 3.79
3931 6323 3.521560 TGTCTTAAGCCTGCAGATTACG 58.478 45.455 17.39 11.41 0.00 3.18
3934 6326 2.890808 TAAGCCTGCAGATTACGAGG 57.109 50.000 17.39 0.00 0.00 4.63
3935 6327 3.724494 GCCTGCAGATTACGAGGC 58.276 61.111 17.39 4.09 44.10 4.70
3936 6328 1.144936 GCCTGCAGATTACGAGGCT 59.855 57.895 17.39 0.00 46.40 4.58
3937 6329 0.389391 GCCTGCAGATTACGAGGCTA 59.611 55.000 17.39 0.00 46.40 3.93
3938 6330 1.870167 GCCTGCAGATTACGAGGCTAC 60.870 57.143 17.39 0.00 46.40 3.58
3939 6331 1.409064 CCTGCAGATTACGAGGCTACA 59.591 52.381 17.39 0.00 0.00 2.74
3940 6332 2.036475 CCTGCAGATTACGAGGCTACAT 59.964 50.000 17.39 0.00 0.00 2.29
3941 6333 3.055591 CTGCAGATTACGAGGCTACATG 58.944 50.000 8.42 0.00 0.00 3.21
3942 6334 2.224042 TGCAGATTACGAGGCTACATGG 60.224 50.000 0.00 0.00 0.00 3.66
3943 6335 2.224066 GCAGATTACGAGGCTACATGGT 60.224 50.000 0.00 0.00 0.00 3.55
3944 6336 3.384668 CAGATTACGAGGCTACATGGTG 58.615 50.000 0.00 0.00 0.00 4.17
3945 6337 2.365617 AGATTACGAGGCTACATGGTGG 59.634 50.000 0.00 0.00 0.00 4.61
3946 6338 0.177141 TTACGAGGCTACATGGTGGC 59.823 55.000 0.00 1.32 39.31 5.01
3947 6339 2.011741 TACGAGGCTACATGGTGGCG 62.012 60.000 0.00 0.00 40.94 5.69
3948 6340 2.203070 GAGGCTACATGGTGGCGG 60.203 66.667 0.00 0.00 40.94 6.13
3949 6341 4.489771 AGGCTACATGGTGGCGGC 62.490 66.667 0.00 0.00 40.94 6.53
3964 6356 4.587189 GGCGGCGCTCGGACTATT 62.587 66.667 32.30 0.00 39.69 1.73
3965 6357 3.030882 GCGGCGCTCGGACTATTC 61.031 66.667 26.86 0.00 39.69 1.75
3966 6358 2.726180 CGGCGCTCGGACTATTCG 60.726 66.667 7.64 0.00 34.75 3.34
3967 6359 2.719979 GGCGCTCGGACTATTCGA 59.280 61.111 7.64 0.00 35.24 3.71
3971 6363 4.924924 CTCGGACTATTCGAGCGG 57.075 61.111 0.58 0.00 45.67 5.52
3972 6364 2.023318 CTCGGACTATTCGAGCGGT 58.977 57.895 0.58 0.00 45.67 5.68
3973 6365 0.381089 CTCGGACTATTCGAGCGGTT 59.619 55.000 0.58 0.00 45.67 4.44
3974 6366 0.099968 TCGGACTATTCGAGCGGTTG 59.900 55.000 0.00 0.00 32.51 3.77
3975 6367 0.870307 CGGACTATTCGAGCGGTTGG 60.870 60.000 1.22 0.00 0.00 3.77
3976 6368 0.529992 GGACTATTCGAGCGGTTGGG 60.530 60.000 1.22 0.00 0.00 4.12
3977 6369 1.152383 GACTATTCGAGCGGTTGGGC 61.152 60.000 1.22 0.00 0.00 5.36
3978 6370 1.153449 CTATTCGAGCGGTTGGGCA 60.153 57.895 1.22 0.00 34.64 5.36
3979 6371 1.153449 TATTCGAGCGGTTGGGCAG 60.153 57.895 1.22 0.00 34.64 4.85
3980 6372 2.587322 TATTCGAGCGGTTGGGCAGG 62.587 60.000 1.22 0.00 34.64 4.85
3986 6378 4.308458 CGGTTGGGCAGGACGACA 62.308 66.667 0.00 0.00 0.00 4.35
3987 6379 2.351276 GGTTGGGCAGGACGACAT 59.649 61.111 0.00 0.00 0.00 3.06
3988 6380 1.600107 GGTTGGGCAGGACGACATA 59.400 57.895 0.00 0.00 0.00 2.29
3989 6381 0.035820 GGTTGGGCAGGACGACATAA 60.036 55.000 0.00 0.00 0.00 1.90
3990 6382 1.369625 GTTGGGCAGGACGACATAAG 58.630 55.000 0.00 0.00 0.00 1.73
3991 6383 0.981183 TTGGGCAGGACGACATAAGT 59.019 50.000 0.00 0.00 0.00 2.24
3992 6384 0.249120 TGGGCAGGACGACATAAGTG 59.751 55.000 0.00 0.00 0.00 3.16
3993 6385 0.535335 GGGCAGGACGACATAAGTGA 59.465 55.000 0.00 0.00 0.00 3.41
3994 6386 1.471676 GGGCAGGACGACATAAGTGAG 60.472 57.143 0.00 0.00 0.00 3.51
3995 6387 1.476891 GGCAGGACGACATAAGTGAGA 59.523 52.381 0.00 0.00 0.00 3.27
3996 6388 2.101582 GGCAGGACGACATAAGTGAGAT 59.898 50.000 0.00 0.00 0.00 2.75
3997 6389 3.119291 GCAGGACGACATAAGTGAGATG 58.881 50.000 0.00 0.00 0.00 2.90
3998 6390 3.181486 GCAGGACGACATAAGTGAGATGA 60.181 47.826 0.00 0.00 0.00 2.92
3999 6391 4.605968 CAGGACGACATAAGTGAGATGAG 58.394 47.826 0.00 0.00 0.00 2.90
4000 6392 3.067461 AGGACGACATAAGTGAGATGAGC 59.933 47.826 0.00 0.00 0.00 4.26
4001 6393 3.376540 GACGACATAAGTGAGATGAGCC 58.623 50.000 0.00 0.00 0.00 4.70
4002 6394 2.223595 ACGACATAAGTGAGATGAGCCG 60.224 50.000 0.00 0.00 0.00 5.52
4003 6395 2.223595 CGACATAAGTGAGATGAGCCGT 60.224 50.000 0.00 0.00 0.00 5.68
4004 6396 3.376540 GACATAAGTGAGATGAGCCGTC 58.623 50.000 0.00 0.00 0.00 4.79
4005 6397 2.101582 ACATAAGTGAGATGAGCCGTCC 59.898 50.000 0.00 0.00 0.00 4.79
4006 6398 0.738975 TAAGTGAGATGAGCCGTCCG 59.261 55.000 0.00 0.00 0.00 4.79
4007 6399 2.564553 AAGTGAGATGAGCCGTCCGC 62.565 60.000 0.00 0.00 37.98 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.470098 AGAAAAATAGCTGCAGTGGCG 59.530 47.619 16.64 0.00 45.35 5.69
8 9 6.525628 CACACAATAGAAAAATAGCTGCAGTG 59.474 38.462 16.64 3.03 0.00 3.66
9 10 6.207417 ACACACAATAGAAAAATAGCTGCAGT 59.793 34.615 16.64 4.79 0.00 4.40
11 12 6.573664 ACACACAATAGAAAAATAGCTGCA 57.426 33.333 1.02 0.00 0.00 4.41
12 13 7.382218 ACAAACACACAATAGAAAAATAGCTGC 59.618 33.333 0.00 0.00 0.00 5.25
13 14 8.801715 ACAAACACACAATAGAAAAATAGCTG 57.198 30.769 0.00 0.00 0.00 4.24
19 20 9.869844 CAACAAAACAAACACACAATAGAAAAA 57.130 25.926 0.00 0.00 0.00 1.94
20 21 9.046296 ACAACAAAACAAACACACAATAGAAAA 57.954 25.926 0.00 0.00 0.00 2.29
21 22 8.594881 ACAACAAAACAAACACACAATAGAAA 57.405 26.923 0.00 0.00 0.00 2.52
22 23 8.085296 AGACAACAAAACAAACACACAATAGAA 58.915 29.630 0.00 0.00 0.00 2.10
23 24 7.598278 AGACAACAAAACAAACACACAATAGA 58.402 30.769 0.00 0.00 0.00 1.98
24 25 7.810766 AGACAACAAAACAAACACACAATAG 57.189 32.000 0.00 0.00 0.00 1.73
25 26 7.359598 GCAAGACAACAAAACAAACACACAATA 60.360 33.333 0.00 0.00 0.00 1.90
26 27 6.565623 GCAAGACAACAAAACAAACACACAAT 60.566 34.615 0.00 0.00 0.00 2.71
27 28 5.277058 GCAAGACAACAAAACAAACACACAA 60.277 36.000 0.00 0.00 0.00 3.33
28 29 4.210120 GCAAGACAACAAAACAAACACACA 59.790 37.500 0.00 0.00 0.00 3.72
29 30 4.447389 AGCAAGACAACAAAACAAACACAC 59.553 37.500 0.00 0.00 0.00 3.82
30 31 4.626042 AGCAAGACAACAAAACAAACACA 58.374 34.783 0.00 0.00 0.00 3.72
31 32 5.590104 AAGCAAGACAACAAAACAAACAC 57.410 34.783 0.00 0.00 0.00 3.32
32 33 6.610741 AAAAGCAAGACAACAAAACAAACA 57.389 29.167 0.00 0.00 0.00 2.83
33 34 6.577055 GGAAAAAGCAAGACAACAAAACAAAC 59.423 34.615 0.00 0.00 0.00 2.93
34 35 6.484977 AGGAAAAAGCAAGACAACAAAACAAA 59.515 30.769 0.00 0.00 0.00 2.83
35 36 5.994668 AGGAAAAAGCAAGACAACAAAACAA 59.005 32.000 0.00 0.00 0.00 2.83
36 37 5.546526 AGGAAAAAGCAAGACAACAAAACA 58.453 33.333 0.00 0.00 0.00 2.83
37 38 6.480524 AAGGAAAAAGCAAGACAACAAAAC 57.519 33.333 0.00 0.00 0.00 2.43
38 39 6.934083 AGAAAGGAAAAAGCAAGACAACAAAA 59.066 30.769 0.00 0.00 0.00 2.44
39 40 6.368516 CAGAAAGGAAAAAGCAAGACAACAAA 59.631 34.615 0.00 0.00 0.00 2.83
40 41 5.868801 CAGAAAGGAAAAAGCAAGACAACAA 59.131 36.000 0.00 0.00 0.00 2.83
41 42 5.410067 CAGAAAGGAAAAAGCAAGACAACA 58.590 37.500 0.00 0.00 0.00 3.33
42 43 4.805719 CCAGAAAGGAAAAAGCAAGACAAC 59.194 41.667 0.00 0.00 41.22 3.32
43 44 4.141959 CCCAGAAAGGAAAAAGCAAGACAA 60.142 41.667 0.00 0.00 41.22 3.18
44 45 3.384467 CCCAGAAAGGAAAAAGCAAGACA 59.616 43.478 0.00 0.00 41.22 3.41
45 46 3.384789 ACCCAGAAAGGAAAAAGCAAGAC 59.615 43.478 0.00 0.00 41.22 3.01
46 47 3.642141 ACCCAGAAAGGAAAAAGCAAGA 58.358 40.909 0.00 0.00 41.22 3.02
47 48 4.406648 AACCCAGAAAGGAAAAAGCAAG 57.593 40.909 0.00 0.00 41.22 4.01
48 49 4.835284 AAACCCAGAAAGGAAAAAGCAA 57.165 36.364 0.00 0.00 41.22 3.91
49 50 4.835284 AAAACCCAGAAAGGAAAAAGCA 57.165 36.364 0.00 0.00 41.22 3.91
50 51 7.715249 AGAAATAAAACCCAGAAAGGAAAAAGC 59.285 33.333 0.00 0.00 41.22 3.51
51 52 9.613428 AAGAAATAAAACCCAGAAAGGAAAAAG 57.387 29.630 0.00 0.00 41.22 2.27
52 53 9.967451 AAAGAAATAAAACCCAGAAAGGAAAAA 57.033 25.926 0.00 0.00 41.22 1.94
53 54 9.607988 GAAAGAAATAAAACCCAGAAAGGAAAA 57.392 29.630 0.00 0.00 41.22 2.29
54 55 8.988060 AGAAAGAAATAAAACCCAGAAAGGAAA 58.012 29.630 0.00 0.00 41.22 3.13
55 56 8.547481 AGAAAGAAATAAAACCCAGAAAGGAA 57.453 30.769 0.00 0.00 41.22 3.36
56 57 8.004801 AGAGAAAGAAATAAAACCCAGAAAGGA 58.995 33.333 0.00 0.00 41.22 3.36
57 58 8.183104 AGAGAAAGAAATAAAACCCAGAAAGG 57.817 34.615 0.00 0.00 37.03 3.11
84 85 8.527810 ACCATGAGAAACAACAAACTAGAAAAA 58.472 29.630 0.00 0.00 0.00 1.94
85 86 8.062065 ACCATGAGAAACAACAAACTAGAAAA 57.938 30.769 0.00 0.00 0.00 2.29
86 87 7.639113 ACCATGAGAAACAACAAACTAGAAA 57.361 32.000 0.00 0.00 0.00 2.52
87 88 7.639113 AACCATGAGAAACAACAAACTAGAA 57.361 32.000 0.00 0.00 0.00 2.10
88 89 7.639113 AAACCATGAGAAACAACAAACTAGA 57.361 32.000 0.00 0.00 0.00 2.43
89 90 8.702163 AAAAACCATGAGAAACAACAAACTAG 57.298 30.769 0.00 0.00 0.00 2.57
112 113 5.070313 AGCTTAAAATGGAGAGGTGCAAAAA 59.930 36.000 0.00 0.00 0.00 1.94
113 114 4.588528 AGCTTAAAATGGAGAGGTGCAAAA 59.411 37.500 0.00 0.00 0.00 2.44
114 115 4.151883 AGCTTAAAATGGAGAGGTGCAAA 58.848 39.130 0.00 0.00 0.00 3.68
115 116 3.766545 AGCTTAAAATGGAGAGGTGCAA 58.233 40.909 0.00 0.00 0.00 4.08
116 117 3.439857 AGCTTAAAATGGAGAGGTGCA 57.560 42.857 0.00 0.00 0.00 4.57
117 118 6.292150 AGTATAGCTTAAAATGGAGAGGTGC 58.708 40.000 0.00 0.00 0.00 5.01
159 160 9.950680 GTGAGTACTTGAAGAAAAATCATTGAA 57.049 29.630 0.00 0.00 0.00 2.69
160 161 8.282592 CGTGAGTACTTGAAGAAAAATCATTGA 58.717 33.333 0.00 0.00 0.00 2.57
161 162 7.535258 CCGTGAGTACTTGAAGAAAAATCATTG 59.465 37.037 0.00 0.00 0.00 2.82
162 163 7.444183 TCCGTGAGTACTTGAAGAAAAATCATT 59.556 33.333 0.00 0.00 0.00 2.57
163 164 6.934645 TCCGTGAGTACTTGAAGAAAAATCAT 59.065 34.615 0.00 0.00 0.00 2.45
164 165 6.285224 TCCGTGAGTACTTGAAGAAAAATCA 58.715 36.000 0.00 0.00 0.00 2.57
165 166 6.780706 TCCGTGAGTACTTGAAGAAAAATC 57.219 37.500 0.00 0.00 0.00 2.17
166 167 6.540914 TGTTCCGTGAGTACTTGAAGAAAAAT 59.459 34.615 0.00 0.00 0.00 1.82
167 168 5.875910 TGTTCCGTGAGTACTTGAAGAAAAA 59.124 36.000 0.00 0.00 0.00 1.94
168 169 5.421277 TGTTCCGTGAGTACTTGAAGAAAA 58.579 37.500 0.00 0.00 0.00 2.29
169 170 5.013568 TGTTCCGTGAGTACTTGAAGAAA 57.986 39.130 0.00 0.00 0.00 2.52
170 171 4.659111 TGTTCCGTGAGTACTTGAAGAA 57.341 40.909 0.00 0.00 0.00 2.52
171 172 4.866508 ATGTTCCGTGAGTACTTGAAGA 57.133 40.909 0.00 0.00 0.00 2.87
172 173 5.924475 AAATGTTCCGTGAGTACTTGAAG 57.076 39.130 0.00 0.00 0.00 3.02
173 174 6.687081 AAAAATGTTCCGTGAGTACTTGAA 57.313 33.333 0.00 0.00 0.00 2.69
174 175 7.972832 ATAAAAATGTTCCGTGAGTACTTGA 57.027 32.000 0.00 0.00 0.00 3.02
304 305 8.898761 TGTGTGTTAAGAAAATGTTCAGTGTAT 58.101 29.630 0.00 0.00 36.09 2.29
305 306 8.178964 GTGTGTGTTAAGAAAATGTTCAGTGTA 58.821 33.333 0.00 0.00 36.09 2.90
306 307 7.027161 GTGTGTGTTAAGAAAATGTTCAGTGT 58.973 34.615 0.00 0.00 36.09 3.55
307 308 7.250569 AGTGTGTGTTAAGAAAATGTTCAGTG 58.749 34.615 0.00 0.00 36.09 3.66
308 309 7.391148 AGTGTGTGTTAAGAAAATGTTCAGT 57.609 32.000 0.00 0.00 36.09 3.41
309 310 9.781834 TTTAGTGTGTGTTAAGAAAATGTTCAG 57.218 29.630 0.00 0.00 36.09 3.02
324 325 9.915629 TGTGTTTAAGAAAAATTTAGTGTGTGT 57.084 25.926 0.00 0.00 0.00 3.72
326 327 9.915629 TGTGTGTTTAAGAAAAATTTAGTGTGT 57.084 25.926 0.00 0.00 0.00 3.72
344 345 9.814899 TTCTGAAAATATGTTTGATGTGTGTTT 57.185 25.926 0.00 0.00 0.00 2.83
345 346 9.814899 TTTCTGAAAATATGTTTGATGTGTGTT 57.185 25.926 0.00 0.00 0.00 3.32
346 347 9.814899 TTTTCTGAAAATATGTTTGATGTGTGT 57.185 25.926 11.33 0.00 0.00 3.72
384 385 6.763135 GCTGGGTTCTTTTCTCTTTGATTTTT 59.237 34.615 0.00 0.00 0.00 1.94
385 386 6.127083 TGCTGGGTTCTTTTCTCTTTGATTTT 60.127 34.615 0.00 0.00 0.00 1.82
386 387 5.363580 TGCTGGGTTCTTTTCTCTTTGATTT 59.636 36.000 0.00 0.00 0.00 2.17
387 388 4.895297 TGCTGGGTTCTTTTCTCTTTGATT 59.105 37.500 0.00 0.00 0.00 2.57
388 389 4.473444 TGCTGGGTTCTTTTCTCTTTGAT 58.527 39.130 0.00 0.00 0.00 2.57
389 390 3.897239 TGCTGGGTTCTTTTCTCTTTGA 58.103 40.909 0.00 0.00 0.00 2.69
390 391 4.614946 CTTGCTGGGTTCTTTTCTCTTTG 58.385 43.478 0.00 0.00 0.00 2.77
391 392 3.068732 GCTTGCTGGGTTCTTTTCTCTTT 59.931 43.478 0.00 0.00 0.00 2.52
392 393 2.625314 GCTTGCTGGGTTCTTTTCTCTT 59.375 45.455 0.00 0.00 0.00 2.85
393 394 2.234143 GCTTGCTGGGTTCTTTTCTCT 58.766 47.619 0.00 0.00 0.00 3.10
394 395 1.956477 TGCTTGCTGGGTTCTTTTCTC 59.044 47.619 0.00 0.00 0.00 2.87
395 396 1.959282 CTGCTTGCTGGGTTCTTTTCT 59.041 47.619 0.00 0.00 0.00 2.52
396 397 1.683385 ACTGCTTGCTGGGTTCTTTTC 59.317 47.619 4.64 0.00 0.00 2.29
397 398 1.780503 ACTGCTTGCTGGGTTCTTTT 58.219 45.000 4.64 0.00 0.00 2.27
398 399 1.780503 AACTGCTTGCTGGGTTCTTT 58.219 45.000 4.64 0.00 0.00 2.52
399 400 1.780503 AAACTGCTTGCTGGGTTCTT 58.219 45.000 4.64 0.00 0.00 2.52
400 401 1.780503 AAAACTGCTTGCTGGGTTCT 58.219 45.000 4.64 0.00 0.00 3.01
401 402 2.473816 GAAAAACTGCTTGCTGGGTTC 58.526 47.619 4.64 1.82 0.00 3.62
402 403 1.202405 CGAAAAACTGCTTGCTGGGTT 60.202 47.619 4.64 0.28 0.00 4.11
403 404 0.385390 CGAAAAACTGCTTGCTGGGT 59.615 50.000 4.64 0.00 0.00 4.51
404 405 0.318955 CCGAAAAACTGCTTGCTGGG 60.319 55.000 4.64 0.00 0.00 4.45
405 406 0.318955 CCCGAAAAACTGCTTGCTGG 60.319 55.000 4.64 0.00 0.00 4.85
406 407 0.318955 CCCCGAAAAACTGCTTGCTG 60.319 55.000 0.00 0.00 0.00 4.41
407 408 0.467290 TCCCCGAAAAACTGCTTGCT 60.467 50.000 0.00 0.00 0.00 3.91
408 409 0.387565 TTCCCCGAAAAACTGCTTGC 59.612 50.000 0.00 0.00 0.00 4.01
409 410 2.880963 TTTCCCCGAAAAACTGCTTG 57.119 45.000 0.00 0.00 0.00 4.01
410 411 3.897141 TTTTTCCCCGAAAAACTGCTT 57.103 38.095 7.94 0.00 43.59 3.91
451 452 6.155393 TGAGCGGGGGTTTTTCATATATTTTT 59.845 34.615 0.00 0.00 0.00 1.94
452 453 5.659079 TGAGCGGGGGTTTTTCATATATTTT 59.341 36.000 0.00 0.00 0.00 1.82
453 454 5.205056 TGAGCGGGGGTTTTTCATATATTT 58.795 37.500 0.00 0.00 0.00 1.40
454 455 4.798882 TGAGCGGGGGTTTTTCATATATT 58.201 39.130 0.00 0.00 0.00 1.28
455 456 4.447138 TGAGCGGGGGTTTTTCATATAT 57.553 40.909 0.00 0.00 0.00 0.86
456 457 3.935818 TGAGCGGGGGTTTTTCATATA 57.064 42.857 0.00 0.00 0.00 0.86
457 458 2.818751 TGAGCGGGGGTTTTTCATAT 57.181 45.000 0.00 0.00 0.00 1.78
458 459 2.224917 ACTTGAGCGGGGGTTTTTCATA 60.225 45.455 0.00 0.00 0.00 2.15
459 460 1.256812 CTTGAGCGGGGGTTTTTCAT 58.743 50.000 0.00 0.00 0.00 2.57
460 461 0.106419 ACTTGAGCGGGGGTTTTTCA 60.106 50.000 0.00 0.00 0.00 2.69
461 462 0.313987 CACTTGAGCGGGGGTTTTTC 59.686 55.000 0.00 0.00 0.00 2.29
462 463 0.106419 TCACTTGAGCGGGGGTTTTT 60.106 50.000 0.00 0.00 0.00 1.94
463 464 0.537371 CTCACTTGAGCGGGGGTTTT 60.537 55.000 0.00 0.00 35.13 2.43
464 465 1.073199 CTCACTTGAGCGGGGGTTT 59.927 57.895 0.00 0.00 35.13 3.27
465 466 2.750350 CTCACTTGAGCGGGGGTT 59.250 61.111 0.00 0.00 35.13 4.11
473 474 1.742831 ACTCTAGCGAGCTCACTTGAG 59.257 52.381 29.59 29.59 44.75 3.02
474 475 1.470494 CACTCTAGCGAGCTCACTTGA 59.530 52.381 15.40 14.53 41.09 3.02
475 476 1.468908 CCACTCTAGCGAGCTCACTTG 60.469 57.143 15.40 10.70 41.09 3.16
476 477 0.814457 CCACTCTAGCGAGCTCACTT 59.186 55.000 15.40 0.44 41.09 3.16
477 478 1.034838 CCCACTCTAGCGAGCTCACT 61.035 60.000 15.40 12.41 41.09 3.41
478 479 1.435515 CCCACTCTAGCGAGCTCAC 59.564 63.158 15.40 3.55 41.09 3.51
479 480 2.418910 GCCCACTCTAGCGAGCTCA 61.419 63.158 15.40 0.00 41.09 4.26
480 481 2.415426 GCCCACTCTAGCGAGCTC 59.585 66.667 2.73 2.73 41.09 4.09
481 482 3.151022 GGCCCACTCTAGCGAGCT 61.151 66.667 2.25 2.25 41.09 4.09
482 483 4.577246 CGGCCCACTCTAGCGAGC 62.577 72.222 0.00 0.00 41.09 5.03
483 484 2.829003 TCGGCCCACTCTAGCGAG 60.829 66.667 0.00 0.00 43.10 5.03
484 485 2.829003 CTCGGCCCACTCTAGCGA 60.829 66.667 0.00 0.00 0.00 4.93
485 486 4.577246 GCTCGGCCCACTCTAGCG 62.577 72.222 0.00 0.00 0.00 4.26
486 487 4.228567 GGCTCGGCCCACTCTAGC 62.229 72.222 0.00 0.00 44.06 3.42
496 497 3.113386 GAGCGGAAAATGGCTCGGC 62.113 63.158 0.00 0.00 45.28 5.54
497 498 3.102097 GAGCGGAAAATGGCTCGG 58.898 61.111 0.00 0.00 45.28 4.63
500 501 0.883833 CAAGTGAGCGGAAAATGGCT 59.116 50.000 0.00 0.00 43.42 4.75
501 502 0.733909 GCAAGTGAGCGGAAAATGGC 60.734 55.000 0.00 0.00 0.00 4.40
502 503 0.597568 TGCAAGTGAGCGGAAAATGG 59.402 50.000 0.00 0.00 37.31 3.16
503 504 1.401931 CCTGCAAGTGAGCGGAAAATG 60.402 52.381 0.00 0.00 43.63 2.32
504 505 0.883833 CCTGCAAGTGAGCGGAAAAT 59.116 50.000 0.00 0.00 43.63 1.82
505 506 1.795170 GCCTGCAAGTGAGCGGAAAA 61.795 55.000 0.00 0.00 43.63 2.29
506 507 2.260869 GCCTGCAAGTGAGCGGAAA 61.261 57.895 0.00 0.00 43.63 3.13
507 508 2.669569 GCCTGCAAGTGAGCGGAA 60.670 61.111 0.00 0.00 43.63 4.30
511 512 2.666190 TCACGCCTGCAAGTGAGC 60.666 61.111 13.26 0.00 41.81 4.26
513 514 2.666190 GCTCACGCCTGCAAGTGA 60.666 61.111 15.53 15.53 44.11 3.41
514 515 2.667536 AGCTCACGCCTGCAAGTG 60.668 61.111 9.55 9.55 39.55 3.16
515 516 2.667536 CAGCTCACGCCTGCAAGT 60.668 61.111 0.00 0.00 36.60 3.16
516 517 3.429141 CCAGCTCACGCCTGCAAG 61.429 66.667 0.00 0.00 36.60 4.01
517 518 3.939939 TCCAGCTCACGCCTGCAA 61.940 61.111 0.00 0.00 36.60 4.08
518 519 4.687215 GTCCAGCTCACGCCTGCA 62.687 66.667 0.00 0.00 36.60 4.41
519 520 2.303549 ATAGTCCAGCTCACGCCTGC 62.304 60.000 0.00 0.00 36.60 4.85
520 521 0.176680 AATAGTCCAGCTCACGCCTG 59.823 55.000 0.00 0.00 36.60 4.85
521 522 0.905357 AAATAGTCCAGCTCACGCCT 59.095 50.000 0.00 0.00 36.60 5.52
522 523 1.009829 CAAATAGTCCAGCTCACGCC 58.990 55.000 0.00 0.00 36.60 5.68
523 524 2.010145 TCAAATAGTCCAGCTCACGC 57.990 50.000 0.00 0.00 0.00 5.34
524 525 2.286294 GCATCAAATAGTCCAGCTCACG 59.714 50.000 0.00 0.00 0.00 4.35
525 526 2.615912 GGCATCAAATAGTCCAGCTCAC 59.384 50.000 0.00 0.00 0.00 3.51
526 527 2.239402 TGGCATCAAATAGTCCAGCTCA 59.761 45.455 0.00 0.00 0.00 4.26
527 528 2.923121 TGGCATCAAATAGTCCAGCTC 58.077 47.619 0.00 0.00 0.00 4.09
528 529 3.370840 TTGGCATCAAATAGTCCAGCT 57.629 42.857 0.00 0.00 0.00 4.24
529 530 3.243636 CCATTGGCATCAAATAGTCCAGC 60.244 47.826 0.00 0.00 36.36 4.85
530 531 3.319972 CCCATTGGCATCAAATAGTCCAG 59.680 47.826 0.00 0.00 36.36 3.86
531 532 3.298619 CCCATTGGCATCAAATAGTCCA 58.701 45.455 0.00 0.00 36.36 4.02
545 546 2.522185 CTCCTATTGGATGCCCATTGG 58.478 52.381 0.00 0.00 43.12 3.16
546 547 2.108776 TCCTCCTATTGGATGCCCATTG 59.891 50.000 0.00 0.00 43.12 2.82
547 548 2.108952 GTCCTCCTATTGGATGCCCATT 59.891 50.000 0.00 0.00 43.12 3.16
548 549 1.707427 GTCCTCCTATTGGATGCCCAT 59.293 52.381 0.00 0.00 43.12 4.00
549 550 1.140312 GTCCTCCTATTGGATGCCCA 58.860 55.000 0.00 0.00 42.29 5.36
550 551 1.349357 GAGTCCTCCTATTGGATGCCC 59.651 57.143 0.00 0.00 42.29 5.36
551 552 2.050144 TGAGTCCTCCTATTGGATGCC 58.950 52.381 0.00 0.00 42.29 4.40
552 553 3.845781 TTGAGTCCTCCTATTGGATGC 57.154 47.619 0.00 0.00 42.29 3.91
553 554 6.425210 TGTATTGAGTCCTCCTATTGGATG 57.575 41.667 0.00 0.00 42.29 3.51
554 555 7.420680 CCTTTGTATTGAGTCCTCCTATTGGAT 60.421 40.741 0.00 0.00 42.29 3.41
555 556 6.126768 CCTTTGTATTGAGTCCTCCTATTGGA 60.127 42.308 0.00 0.00 40.69 3.53
556 557 6.058183 CCTTTGTATTGAGTCCTCCTATTGG 58.942 44.000 0.00 0.00 0.00 3.16
557 558 6.653989 ACCTTTGTATTGAGTCCTCCTATTG 58.346 40.000 0.00 0.00 0.00 1.90
558 559 6.443849 TGACCTTTGTATTGAGTCCTCCTATT 59.556 38.462 0.00 0.00 0.00 1.73
559 560 5.964477 TGACCTTTGTATTGAGTCCTCCTAT 59.036 40.000 0.00 0.00 0.00 2.57
560 561 5.338632 TGACCTTTGTATTGAGTCCTCCTA 58.661 41.667 0.00 0.00 0.00 2.94
561 562 4.168101 TGACCTTTGTATTGAGTCCTCCT 58.832 43.478 0.00 0.00 0.00 3.69
562 563 4.553330 TGACCTTTGTATTGAGTCCTCC 57.447 45.455 0.00 0.00 0.00 4.30
563 564 5.763204 TGTTTGACCTTTGTATTGAGTCCTC 59.237 40.000 0.00 0.00 0.00 3.71
564 565 5.690865 TGTTTGACCTTTGTATTGAGTCCT 58.309 37.500 0.00 0.00 0.00 3.85
565 566 6.385649 TTGTTTGACCTTTGTATTGAGTCC 57.614 37.500 0.00 0.00 0.00 3.85
566 567 7.254852 TGTTTGTTTGACCTTTGTATTGAGTC 58.745 34.615 0.00 0.00 0.00 3.36
567 568 7.122055 TCTGTTTGTTTGACCTTTGTATTGAGT 59.878 33.333 0.00 0.00 0.00 3.41
568 569 7.432252 GTCTGTTTGTTTGACCTTTGTATTGAG 59.568 37.037 0.00 0.00 0.00 3.02
569 570 7.094162 TGTCTGTTTGTTTGACCTTTGTATTGA 60.094 33.333 0.00 0.00 0.00 2.57
570 571 7.032580 TGTCTGTTTGTTTGACCTTTGTATTG 58.967 34.615 0.00 0.00 0.00 1.90
571 572 7.164230 TGTCTGTTTGTTTGACCTTTGTATT 57.836 32.000 0.00 0.00 0.00 1.89
572 573 6.767524 TGTCTGTTTGTTTGACCTTTGTAT 57.232 33.333 0.00 0.00 0.00 2.29
573 574 6.383415 GTTGTCTGTTTGTTTGACCTTTGTA 58.617 36.000 0.00 0.00 0.00 2.41
574 575 5.227152 GTTGTCTGTTTGTTTGACCTTTGT 58.773 37.500 0.00 0.00 0.00 2.83
575 576 4.625311 GGTTGTCTGTTTGTTTGACCTTTG 59.375 41.667 0.00 0.00 0.00 2.77
576 577 4.526650 AGGTTGTCTGTTTGTTTGACCTTT 59.473 37.500 0.00 0.00 32.63 3.11
577 578 4.086457 AGGTTGTCTGTTTGTTTGACCTT 58.914 39.130 0.00 0.00 32.63 3.50
578 579 3.697166 AGGTTGTCTGTTTGTTTGACCT 58.303 40.909 0.00 0.00 0.00 3.85
579 580 4.638865 AGTAGGTTGTCTGTTTGTTTGACC 59.361 41.667 0.00 0.00 0.00 4.02
580 581 5.585047 AGAGTAGGTTGTCTGTTTGTTTGAC 59.415 40.000 0.00 0.00 0.00 3.18
581 582 5.741011 AGAGTAGGTTGTCTGTTTGTTTGA 58.259 37.500 0.00 0.00 0.00 2.69
582 583 6.436843 AAGAGTAGGTTGTCTGTTTGTTTG 57.563 37.500 0.00 0.00 0.00 2.93
583 584 6.095021 GGAAAGAGTAGGTTGTCTGTTTGTTT 59.905 38.462 0.00 0.00 29.58 2.83
584 585 5.589050 GGAAAGAGTAGGTTGTCTGTTTGTT 59.411 40.000 0.00 0.00 29.58 2.83
585 586 5.104485 AGGAAAGAGTAGGTTGTCTGTTTGT 60.104 40.000 0.00 0.00 29.58 2.83
586 587 5.368989 AGGAAAGAGTAGGTTGTCTGTTTG 58.631 41.667 0.00 0.00 29.58 2.93
587 588 5.632034 AGGAAAGAGTAGGTTGTCTGTTT 57.368 39.130 0.00 0.00 31.54 2.83
588 589 5.839606 AGTAGGAAAGAGTAGGTTGTCTGTT 59.160 40.000 0.00 0.00 0.00 3.16
589 590 5.395611 AGTAGGAAAGAGTAGGTTGTCTGT 58.604 41.667 0.00 0.00 0.00 3.41
590 591 5.986501 AGTAGGAAAGAGTAGGTTGTCTG 57.013 43.478 0.00 0.00 0.00 3.51
591 592 7.240167 AGTAAGTAGGAAAGAGTAGGTTGTCT 58.760 38.462 0.00 0.00 0.00 3.41
592 593 7.465353 AGTAAGTAGGAAAGAGTAGGTTGTC 57.535 40.000 0.00 0.00 0.00 3.18
593 594 8.578448 CTAGTAAGTAGGAAAGAGTAGGTTGT 57.422 38.462 0.00 0.00 0.00 3.32
608 609 6.683360 GCCTGTTAAAGCTCCCTAGTAAGTAG 60.683 46.154 0.00 0.00 0.00 2.57
609 610 5.128335 GCCTGTTAAAGCTCCCTAGTAAGTA 59.872 44.000 0.00 0.00 0.00 2.24
610 611 4.081031 GCCTGTTAAAGCTCCCTAGTAAGT 60.081 45.833 0.00 0.00 0.00 2.24
611 612 4.162509 AGCCTGTTAAAGCTCCCTAGTAAG 59.837 45.833 0.00 0.00 32.71 2.34
612 613 4.101856 AGCCTGTTAAAGCTCCCTAGTAA 58.898 43.478 0.00 0.00 32.71 2.24
613 614 3.721021 AGCCTGTTAAAGCTCCCTAGTA 58.279 45.455 0.00 0.00 32.71 1.82
614 615 2.552367 AGCCTGTTAAAGCTCCCTAGT 58.448 47.619 0.00 0.00 32.71 2.57
662 663 9.392259 GGCCTTGACATTAGTACTAAAAACTAT 57.608 33.333 18.88 0.00 29.86 2.12
671 672 2.092914 GCTGGGCCTTGACATTAGTACT 60.093 50.000 4.53 0.00 0.00 2.73
672 673 2.289565 GCTGGGCCTTGACATTAGTAC 58.710 52.381 4.53 0.00 0.00 2.73
687 688 2.283173 GGAAGTGGTTGGGCTGGG 60.283 66.667 0.00 0.00 0.00 4.45
689 690 2.270986 GCTGGAAGTGGTTGGGCTG 61.271 63.158 0.00 0.00 35.30 4.85
703 704 2.535485 TATGCGTTGGACTGGGCTGG 62.535 60.000 0.00 0.00 0.00 4.85
719 720 3.702330 CTGCCAGTGTCATGCAAATATG 58.298 45.455 0.00 0.00 34.06 1.78
748 749 6.819146 GCGAATCTAGAAATAAATAGAGGGGG 59.181 42.308 0.00 0.00 31.81 5.40
749 750 6.819146 GGCGAATCTAGAAATAAATAGAGGGG 59.181 42.308 0.00 0.00 31.81 4.79
750 751 7.386851 TGGCGAATCTAGAAATAAATAGAGGG 58.613 38.462 0.00 0.00 31.81 4.30
751 752 8.713271 GTTGGCGAATCTAGAAATAAATAGAGG 58.287 37.037 0.00 0.00 31.81 3.69
752 753 9.482627 AGTTGGCGAATCTAGAAATAAATAGAG 57.517 33.333 0.00 0.00 31.81 2.43
753 754 9.477484 GAGTTGGCGAATCTAGAAATAAATAGA 57.523 33.333 0.00 0.00 32.79 1.98
754 755 8.428536 CGAGTTGGCGAATCTAGAAATAAATAG 58.571 37.037 0.00 0.00 0.00 1.73
755 756 7.924412 ACGAGTTGGCGAATCTAGAAATAAATA 59.076 33.333 0.00 0.00 34.83 1.40
764 765 1.560923 CCACGAGTTGGCGAATCTAG 58.439 55.000 0.17 0.00 39.07 2.43
777 778 1.478510 AGGAGCATCTACAACCACGAG 59.521 52.381 0.00 0.00 33.73 4.18
778 779 1.557099 AGGAGCATCTACAACCACGA 58.443 50.000 0.00 0.00 33.73 4.35
779 780 2.688446 TCTAGGAGCATCTACAACCACG 59.312 50.000 0.00 0.00 33.73 4.94
780 781 3.447586 TGTCTAGGAGCATCTACAACCAC 59.552 47.826 0.00 0.00 33.73 4.16
785 788 1.950216 CGCTGTCTAGGAGCATCTACA 59.050 52.381 13.19 0.00 36.12 2.74
937 1211 2.197324 GGGGTTGGTGTGGCTTGA 59.803 61.111 0.00 0.00 0.00 3.02
965 1248 1.534336 TAGCTAAACGGTGGCGGTGA 61.534 55.000 0.00 0.00 0.00 4.02
1764 2269 2.817258 CGGCACCAAGATTTTCAGGTTA 59.183 45.455 0.00 0.00 30.44 2.85
2213 2791 4.576463 CCCTCCTTGGAATAAATCTCAACG 59.424 45.833 0.00 0.00 38.35 4.10
2368 2946 7.096551 CCGAAATATGGATTCAGTTGGTTTTT 58.903 34.615 0.00 0.00 0.00 1.94
2450 3036 1.203162 ACCTGCCATTGGACATTTGGA 60.203 47.619 6.95 0.00 31.94 3.53
2451 3037 1.066716 CACCTGCCATTGGACATTTGG 60.067 52.381 6.95 4.88 0.00 3.28
2452 3038 1.066716 CCACCTGCCATTGGACATTTG 60.067 52.381 6.95 4.47 34.46 2.32
2453 3039 1.269012 CCACCTGCCATTGGACATTT 58.731 50.000 6.95 0.00 34.46 2.32
2454 3040 0.114954 ACCACCTGCCATTGGACATT 59.885 50.000 6.95 0.00 36.28 2.71
2455 3041 0.114954 AACCACCTGCCATTGGACAT 59.885 50.000 6.95 0.00 36.28 3.06
2456 3042 0.539438 GAACCACCTGCCATTGGACA 60.539 55.000 6.95 3.28 36.28 4.02
2457 3043 0.539438 TGAACCACCTGCCATTGGAC 60.539 55.000 6.95 0.00 36.28 4.02
2595 3275 2.423577 AGTTCCATTAACTGCCGTGTC 58.576 47.619 0.00 0.00 46.90 3.67
2671 3351 0.890683 CAGGCTGCCCGAAATCTTTT 59.109 50.000 16.57 0.00 35.76 2.27
2749 3429 1.743252 GTTCAGCTCCTTCAGGCGG 60.743 63.158 0.00 0.00 34.44 6.13
2813 3493 3.488090 GCTGTTAGGCGCCACGAC 61.488 66.667 31.54 22.94 33.59 4.34
2926 3607 3.096495 TCATACCCCTGCAGCCCC 61.096 66.667 8.66 0.00 0.00 5.80
2951 3632 4.963318 AAGAATAGGCCATCTCGATCAA 57.037 40.909 5.01 0.00 0.00 2.57
3116 3814 8.047310 ACTTCCTGACCCAATAAGTAATACTTG 58.953 37.037 15.34 0.01 39.11 3.16
3147 3845 9.113838 CCACATTGCTAGTTTATTCAGAGTTAT 57.886 33.333 0.00 0.00 0.00 1.89
3175 3873 5.298276 TGCCTGTTGTTTCACCTTTAGTAAG 59.702 40.000 0.00 0.00 0.00 2.34
3176 3874 5.066764 GTGCCTGTTGTTTCACCTTTAGTAA 59.933 40.000 0.00 0.00 0.00 2.24
3177 3875 4.577283 GTGCCTGTTGTTTCACCTTTAGTA 59.423 41.667 0.00 0.00 0.00 1.82
3247 3970 2.413453 GCTTTCTTGTCCTAGTGAAGCG 59.587 50.000 0.00 0.00 31.35 4.68
3356 4361 9.956720 CTGATGCTCCTTTTATCGAAATTATTT 57.043 29.630 0.00 0.00 0.00 1.40
3523 4542 8.037758 TGGTAAAAGCAATCTCAAACAGAAAAA 58.962 29.630 0.00 0.00 33.62 1.94
3524 4543 7.491048 GTGGTAAAAGCAATCTCAAACAGAAAA 59.509 33.333 0.00 0.00 33.62 2.29
3525 4544 6.978080 GTGGTAAAAGCAATCTCAAACAGAAA 59.022 34.615 0.00 0.00 33.62 2.52
3526 4545 6.503524 GTGGTAAAAGCAATCTCAAACAGAA 58.496 36.000 0.00 0.00 33.62 3.02
3527 4546 5.277779 CGTGGTAAAAGCAATCTCAAACAGA 60.278 40.000 0.00 0.00 34.78 3.41
3528 4547 4.911610 CGTGGTAAAAGCAATCTCAAACAG 59.088 41.667 0.00 0.00 0.00 3.16
3529 4548 4.336993 ACGTGGTAAAAGCAATCTCAAACA 59.663 37.500 0.00 0.00 0.00 2.83
3530 4549 4.675114 CACGTGGTAAAAGCAATCTCAAAC 59.325 41.667 7.95 0.00 0.00 2.93
3531 4550 4.261405 CCACGTGGTAAAAGCAATCTCAAA 60.261 41.667 26.95 0.00 0.00 2.69
3532 4551 3.252215 CCACGTGGTAAAAGCAATCTCAA 59.748 43.478 26.95 0.00 0.00 3.02
3533 4552 2.811431 CCACGTGGTAAAAGCAATCTCA 59.189 45.455 26.95 0.00 0.00 3.27
3534 4553 3.471495 CCACGTGGTAAAAGCAATCTC 57.529 47.619 26.95 0.00 0.00 2.75
3547 4566 1.498865 GACTTGCAGTCACCACGTGG 61.499 60.000 32.83 32.83 44.45 4.94
3548 4567 1.934463 GACTTGCAGTCACCACGTG 59.066 57.895 9.08 9.08 44.45 4.49
3549 4568 4.438346 GACTTGCAGTCACCACGT 57.562 55.556 10.30 0.00 44.45 4.49
3556 4575 6.037172 TGTTTCTTTGTAGAAGACTTGCAGTC 59.963 38.462 7.88 7.88 45.38 3.51
3557 4576 5.880332 TGTTTCTTTGTAGAAGACTTGCAGT 59.120 36.000 0.00 0.00 41.25 4.40
3558 4577 6.258727 TCTGTTTCTTTGTAGAAGACTTGCAG 59.741 38.462 0.00 0.00 41.25 4.41
3559 4578 6.112734 TCTGTTTCTTTGTAGAAGACTTGCA 58.887 36.000 0.00 0.00 41.25 4.08
3560 4579 6.604735 TCTGTTTCTTTGTAGAAGACTTGC 57.395 37.500 0.00 0.00 41.25 4.01
3561 4580 7.641802 GCTTTCTGTTTCTTTGTAGAAGACTTG 59.358 37.037 0.00 0.00 41.25 3.16
3562 4581 7.336931 TGCTTTCTGTTTCTTTGTAGAAGACTT 59.663 33.333 0.00 0.00 41.25 3.01
3563 4582 6.823689 TGCTTTCTGTTTCTTTGTAGAAGACT 59.176 34.615 0.00 0.00 41.25 3.24
3564 4583 7.016361 TGCTTTCTGTTTCTTTGTAGAAGAC 57.984 36.000 0.00 0.00 41.25 3.01
3605 4663 2.102588 TCCTCGCCATAGTTTAGAAGCC 59.897 50.000 0.00 0.00 0.00 4.35
3638 4696 3.571571 TGCTGCGGATGTCGTTATATAC 58.428 45.455 0.00 0.00 41.72 1.47
3663 4721 5.695851 ACTGTGGACAAAGAATGAATGAC 57.304 39.130 0.00 0.00 0.00 3.06
3855 4913 1.057275 TGCTTCTACACCACCCACCA 61.057 55.000 0.00 0.00 0.00 4.17
3931 6323 2.203070 CCGCCACCATGTAGCCTC 60.203 66.667 0.00 0.00 0.00 4.70
3947 6339 4.587189 AATAGTCCGAGCGCCGCC 62.587 66.667 4.98 0.00 36.84 6.13
3948 6340 3.030882 GAATAGTCCGAGCGCCGC 61.031 66.667 2.29 0.00 36.84 6.53
3949 6341 2.726180 CGAATAGTCCGAGCGCCG 60.726 66.667 2.29 7.65 38.18 6.46
3950 6342 1.370657 CTCGAATAGTCCGAGCGCC 60.371 63.158 2.29 0.00 45.37 6.53
3951 6343 4.213700 CTCGAATAGTCCGAGCGC 57.786 61.111 0.00 0.00 45.37 5.92
3955 6347 0.099968 CAACCGCTCGAATAGTCCGA 59.900 55.000 0.00 0.00 34.61 4.55
3956 6348 0.870307 CCAACCGCTCGAATAGTCCG 60.870 60.000 0.00 0.00 0.00 4.79
3957 6349 0.529992 CCCAACCGCTCGAATAGTCC 60.530 60.000 0.00 0.00 0.00 3.85
3958 6350 1.152383 GCCCAACCGCTCGAATAGTC 61.152 60.000 0.00 0.00 0.00 2.59
3959 6351 1.153429 GCCCAACCGCTCGAATAGT 60.153 57.895 0.00 0.00 0.00 2.12
3960 6352 1.153449 TGCCCAACCGCTCGAATAG 60.153 57.895 0.00 0.00 0.00 1.73
3961 6353 1.153449 CTGCCCAACCGCTCGAATA 60.153 57.895 0.00 0.00 0.00 1.75
3962 6354 2.436646 CTGCCCAACCGCTCGAAT 60.437 61.111 0.00 0.00 0.00 3.34
3963 6355 4.697756 CCTGCCCAACCGCTCGAA 62.698 66.667 0.00 0.00 0.00 3.71
3969 6361 2.233605 TATGTCGTCCTGCCCAACCG 62.234 60.000 0.00 0.00 0.00 4.44
3970 6362 0.035820 TTATGTCGTCCTGCCCAACC 60.036 55.000 0.00 0.00 0.00 3.77
3971 6363 1.338769 ACTTATGTCGTCCTGCCCAAC 60.339 52.381 0.00 0.00 0.00 3.77
3972 6364 0.981183 ACTTATGTCGTCCTGCCCAA 59.019 50.000 0.00 0.00 0.00 4.12
3973 6365 0.249120 CACTTATGTCGTCCTGCCCA 59.751 55.000 0.00 0.00 0.00 5.36
3974 6366 0.535335 TCACTTATGTCGTCCTGCCC 59.465 55.000 0.00 0.00 0.00 5.36
3975 6367 1.476891 TCTCACTTATGTCGTCCTGCC 59.523 52.381 0.00 0.00 0.00 4.85
3976 6368 2.941453 TCTCACTTATGTCGTCCTGC 57.059 50.000 0.00 0.00 0.00 4.85
3977 6369 4.605968 CTCATCTCACTTATGTCGTCCTG 58.394 47.826 0.00 0.00 0.00 3.86
3978 6370 3.067461 GCTCATCTCACTTATGTCGTCCT 59.933 47.826 0.00 0.00 0.00 3.85
3979 6371 3.376540 GCTCATCTCACTTATGTCGTCC 58.623 50.000 0.00 0.00 0.00 4.79
3980 6372 3.376540 GGCTCATCTCACTTATGTCGTC 58.623 50.000 0.00 0.00 0.00 4.20
3981 6373 2.223595 CGGCTCATCTCACTTATGTCGT 60.224 50.000 0.00 0.00 0.00 4.34
3982 6374 2.223595 ACGGCTCATCTCACTTATGTCG 60.224 50.000 0.00 0.00 0.00 4.35
3983 6375 3.376540 GACGGCTCATCTCACTTATGTC 58.623 50.000 0.00 0.00 0.00 3.06
3984 6376 2.101582 GGACGGCTCATCTCACTTATGT 59.898 50.000 0.00 0.00 0.00 2.29
3985 6377 2.748605 GGACGGCTCATCTCACTTATG 58.251 52.381 0.00 0.00 0.00 1.90
3986 6378 1.338337 CGGACGGCTCATCTCACTTAT 59.662 52.381 0.00 0.00 0.00 1.73
3987 6379 0.738975 CGGACGGCTCATCTCACTTA 59.261 55.000 0.00 0.00 0.00 2.24
3988 6380 1.513158 CGGACGGCTCATCTCACTT 59.487 57.895 0.00 0.00 0.00 3.16
3989 6381 3.069980 GCGGACGGCTCATCTCACT 62.070 63.158 0.00 0.00 39.11 3.41
3990 6382 2.583593 GCGGACGGCTCATCTCAC 60.584 66.667 0.00 0.00 39.11 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.