Multiple sequence alignment - TraesCS3D01G364300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G364300 chr3D 100.000 3599 0 0 1 3599 478063177 478059579 0.000000e+00 6647.0
1 TraesCS3D01G364300 chr3D 96.970 132 4 0 3319 3450 267292579 267292448 4.680000e-54 222.0
2 TraesCS3D01G364300 chr3D 89.773 88 6 2 1641 1728 108278561 108278477 3.800000e-20 110.0
3 TraesCS3D01G364300 chr3B 93.605 2971 112 31 197 3150 637337573 637334664 0.000000e+00 4362.0
4 TraesCS3D01G364300 chr3B 92.105 76 6 0 3524 3599 637333977 637333902 1.370000e-19 108.0
5 TraesCS3D01G364300 chr3A 92.377 2768 105 47 219 2951 621514775 621517471 0.000000e+00 3845.0
6 TraesCS3D01G364300 chr3A 90.805 87 7 1 3173 3258 621517722 621517808 8.170000e-22 115.0
7 TraesCS3D01G364300 chr3A 87.302 63 5 3 3034 3094 443095124 443095185 6.450000e-08 69.4
8 TraesCS3D01G364300 chr1A 83.146 1513 210 33 1076 2564 472550441 472551932 0.000000e+00 1339.0
9 TraesCS3D01G364300 chr1A 96.269 134 5 0 3318 3451 22647938 22647805 1.680000e-53 220.0
10 TraesCS3D01G364300 chr1A 88.525 61 2 4 3034 3094 547389704 547389759 6.450000e-08 69.4
11 TraesCS3D01G364300 chr1A 95.122 41 1 1 3054 3094 576530986 576530947 3.000000e-06 63.9
12 TraesCS3D01G364300 chr1D 82.488 1519 217 33 1076 2568 373116147 373117642 0.000000e+00 1286.0
13 TraesCS3D01G364300 chr1B 82.003 1528 229 32 1076 2580 498063516 498065020 0.000000e+00 1256.0
14 TraesCS3D01G364300 chr1B 91.304 46 3 1 3049 3094 668145917 668145961 1.080000e-05 62.1
15 TraesCS3D01G364300 chr4D 73.870 1018 216 30 1570 2553 115543351 115542350 9.500000e-96 361.0
16 TraesCS3D01G364300 chr4D 96.992 133 4 0 3318 3450 494795945 494795813 1.300000e-54 224.0
17 TraesCS3D01G364300 chr4A 74.317 915 193 24 1567 2451 461354473 461355375 2.060000e-92 350.0
18 TraesCS3D01G364300 chr4A 94.964 139 7 0 3312 3450 713391863 713392001 6.050000e-53 219.0
19 TraesCS3D01G364300 chr7D 87.368 285 33 1 1641 1925 426500488 426500207 1.250000e-84 324.0
20 TraesCS3D01G364300 chr7D 86.047 258 36 0 1641 1898 426635365 426635108 9.840000e-71 278.0
21 TraesCS3D01G364300 chr7D 95.745 141 4 2 3311 3450 473577896 473577757 3.620000e-55 226.0
22 TraesCS3D01G364300 chr7D 79.518 166 28 6 3054 3218 376347274 376347434 2.940000e-21 113.0
23 TraesCS3D01G364300 chr7D 76.636 214 32 16 3054 3258 503340788 503340584 6.360000e-18 102.0
24 TraesCS3D01G364300 chr7D 89.062 64 7 0 1059 1122 426500574 426500511 2.980000e-11 80.5
25 TraesCS3D01G364300 chr2B 89.216 204 18 3 1641 1844 672337598 672337797 5.970000e-63 252.0
26 TraesCS3D01G364300 chr5D 96.377 138 5 0 3314 3451 412713361 412713498 1.010000e-55 228.0
27 TraesCS3D01G364300 chr7B 95.588 136 6 0 3316 3451 336814495 336814360 6.050000e-53 219.0
28 TraesCS3D01G364300 chr7B 89.908 109 11 0 1046 1154 443705464 443705356 1.350000e-29 141.0
29 TraesCS3D01G364300 chr7B 81.818 132 15 8 3054 3182 531820077 531819952 6.360000e-18 102.0
30 TraesCS3D01G364300 chr6B 94.928 138 7 0 3313 3450 4291873 4292010 2.180000e-52 217.0
31 TraesCS3D01G364300 chr5B 94.366 142 7 1 3310 3450 215927055 215926914 2.180000e-52 217.0
32 TraesCS3D01G364300 chr2D 71.784 925 212 37 1570 2474 618645761 618646656 2.180000e-52 217.0
33 TraesCS3D01G364300 chr2D 71.605 891 204 37 1570 2440 618531830 618530969 7.880000e-47 198.0
34 TraesCS3D01G364300 chr7A 79.487 156 20 10 3030 3182 571372979 571373125 2.290000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G364300 chr3D 478059579 478063177 3598 True 6647 6647 100.000 1 3599 1 chr3D.!!$R3 3598
1 TraesCS3D01G364300 chr3B 637333902 637337573 3671 True 2235 4362 92.855 197 3599 2 chr3B.!!$R1 3402
2 TraesCS3D01G364300 chr3A 621514775 621517808 3033 False 1980 3845 91.591 219 3258 2 chr3A.!!$F2 3039
3 TraesCS3D01G364300 chr1A 472550441 472551932 1491 False 1339 1339 83.146 1076 2564 1 chr1A.!!$F1 1488
4 TraesCS3D01G364300 chr1D 373116147 373117642 1495 False 1286 1286 82.488 1076 2568 1 chr1D.!!$F1 1492
5 TraesCS3D01G364300 chr1B 498063516 498065020 1504 False 1256 1256 82.003 1076 2580 1 chr1B.!!$F1 1504
6 TraesCS3D01G364300 chr4D 115542350 115543351 1001 True 361 361 73.870 1570 2553 1 chr4D.!!$R1 983
7 TraesCS3D01G364300 chr4A 461354473 461355375 902 False 350 350 74.317 1567 2451 1 chr4A.!!$F1 884
8 TraesCS3D01G364300 chr2D 618645761 618646656 895 False 217 217 71.784 1570 2474 1 chr2D.!!$F1 904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 196 0.036164 CCATCGTCACCCCAAACAGA 59.964 55.0 0.0 0.0 0.0 3.41 F
418 439 0.390340 CACTGTCTGGATCGTGGTGG 60.390 60.0 0.0 0.0 0.0 4.61 F
1773 1821 0.110509 CGTTGCAGATCATATGGCGC 60.111 55.0 0.0 0.0 0.0 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1558 1606 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20 R
1857 1905 3.579626 GAGCTTGTGTCGTTGCCGC 62.580 63.158 0.00 0.00 0.00 6.53 R
3363 4002 0.107508 AATGAGTGGTGATGGAGGCG 60.108 55.000 0.00 0.00 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 4.680237 CCCAGCAAGTGACCGCGA 62.680 66.667 8.23 0.00 0.00 5.87
48 49 3.114616 CCAGCAAGTGACCGCGAG 61.115 66.667 8.23 0.00 0.00 5.03
49 50 3.782244 CAGCAAGTGACCGCGAGC 61.782 66.667 8.23 0.00 0.00 5.03
87 88 2.049156 CAGCGACGAGTTGCCTCA 60.049 61.111 11.52 0.00 40.86 3.86
88 89 2.091112 CAGCGACGAGTTGCCTCAG 61.091 63.158 11.52 0.00 40.86 3.35
89 90 3.482783 GCGACGAGTTGCCTCAGC 61.483 66.667 0.00 0.00 37.59 4.26
90 91 3.175240 CGACGAGTTGCCTCAGCG 61.175 66.667 0.00 0.00 44.31 5.18
91 92 2.811317 GACGAGTTGCCTCAGCGG 60.811 66.667 0.00 0.00 44.31 5.52
92 93 4.379243 ACGAGTTGCCTCAGCGGG 62.379 66.667 0.00 0.00 44.31 6.13
113 114 3.284449 GGGTGCAGCGGACGTTTT 61.284 61.111 10.24 0.00 0.00 2.43
114 115 1.962306 GGGTGCAGCGGACGTTTTA 60.962 57.895 10.24 0.00 0.00 1.52
115 116 1.508808 GGGTGCAGCGGACGTTTTAA 61.509 55.000 10.24 0.00 0.00 1.52
116 117 0.110373 GGTGCAGCGGACGTTTTAAG 60.110 55.000 0.00 0.00 0.00 1.85
117 118 0.110373 GTGCAGCGGACGTTTTAAGG 60.110 55.000 0.00 0.00 0.00 2.69
118 119 0.533308 TGCAGCGGACGTTTTAAGGT 60.533 50.000 0.00 0.00 0.00 3.50
119 120 0.589708 GCAGCGGACGTTTTAAGGTT 59.410 50.000 0.00 0.00 0.00 3.50
120 121 1.662026 GCAGCGGACGTTTTAAGGTTG 60.662 52.381 0.00 0.00 0.00 3.77
121 122 1.069500 CAGCGGACGTTTTAAGGTTGG 60.069 52.381 0.00 0.00 0.00 3.77
122 123 0.239082 GCGGACGTTTTAAGGTTGGG 59.761 55.000 0.00 0.00 0.00 4.12
123 124 0.239082 CGGACGTTTTAAGGTTGGGC 59.761 55.000 0.00 0.00 0.00 5.36
124 125 0.239082 GGACGTTTTAAGGTTGGGCG 59.761 55.000 0.00 0.00 0.00 6.13
125 126 0.386352 GACGTTTTAAGGTTGGGCGC 60.386 55.000 0.00 0.00 0.00 6.53
126 127 1.081041 CGTTTTAAGGTTGGGCGCC 60.081 57.895 21.18 21.18 0.00 6.53
127 128 1.797211 CGTTTTAAGGTTGGGCGCCA 61.797 55.000 30.85 12.04 0.00 5.69
128 129 0.319211 GTTTTAAGGTTGGGCGCCAC 60.319 55.000 30.85 19.13 30.78 5.01
129 130 1.797211 TTTTAAGGTTGGGCGCCACG 61.797 55.000 30.85 0.00 30.78 4.94
130 131 2.962142 TTTAAGGTTGGGCGCCACGT 62.962 55.000 30.85 17.67 30.78 4.49
131 132 2.962142 TTAAGGTTGGGCGCCACGTT 62.962 55.000 30.85 26.12 30.78 3.99
132 133 2.109517 TAAGGTTGGGCGCCACGTTA 62.110 55.000 30.85 25.08 30.78 3.18
133 134 3.428282 GGTTGGGCGCCACGTTAG 61.428 66.667 30.85 0.00 30.78 2.34
134 135 3.428282 GTTGGGCGCCACGTTAGG 61.428 66.667 30.85 0.00 30.78 2.69
146 147 3.849953 GTTAGGCGCCGCGAACAG 61.850 66.667 26.86 0.00 0.00 3.16
147 148 4.058732 TTAGGCGCCGCGAACAGA 62.059 61.111 23.20 0.00 0.00 3.41
148 149 3.576932 TTAGGCGCCGCGAACAGAA 62.577 57.895 23.20 3.45 0.00 3.02
149 150 3.576932 TAGGCGCCGCGAACAGAAA 62.577 57.895 23.20 0.00 0.00 2.52
150 151 4.736631 GGCGCCGCGAACAGAAAC 62.737 66.667 18.91 0.00 0.00 2.78
151 152 4.736631 GCGCCGCGAACAGAAACC 62.737 66.667 18.91 0.00 0.00 3.27
152 153 4.424430 CGCCGCGAACAGAAACCG 62.424 66.667 8.23 0.00 0.00 4.44
153 154 4.084888 GCCGCGAACAGAAACCGG 62.085 66.667 8.23 0.00 41.72 5.28
154 155 2.356553 CCGCGAACAGAAACCGGA 60.357 61.111 9.46 0.00 41.34 5.14
155 156 2.664436 CCGCGAACAGAAACCGGAC 61.664 63.158 9.46 0.00 41.34 4.79
156 157 2.851104 GCGAACAGAAACCGGACG 59.149 61.111 9.46 1.70 0.00 4.79
157 158 2.851104 CGAACAGAAACCGGACGC 59.149 61.111 9.46 0.00 0.00 5.19
158 159 1.952133 CGAACAGAAACCGGACGCA 60.952 57.895 9.46 0.00 0.00 5.24
159 160 1.568025 GAACAGAAACCGGACGCAC 59.432 57.895 9.46 0.00 0.00 5.34
160 161 1.153329 AACAGAAACCGGACGCACA 60.153 52.632 9.46 0.00 0.00 4.57
161 162 0.534203 AACAGAAACCGGACGCACAT 60.534 50.000 9.46 0.00 0.00 3.21
162 163 1.227999 ACAGAAACCGGACGCACATG 61.228 55.000 9.46 0.00 0.00 3.21
163 164 1.070786 AGAAACCGGACGCACATGT 59.929 52.632 9.46 0.00 0.00 3.21
164 165 0.949105 AGAAACCGGACGCACATGTC 60.949 55.000 9.46 0.00 38.17 3.06
171 172 3.071495 GACGCACATGTCCGTTTTG 57.929 52.632 17.25 0.00 37.87 2.44
172 173 0.385473 GACGCACATGTCCGTTTTGG 60.385 55.000 17.25 0.00 37.87 3.28
173 174 1.098712 ACGCACATGTCCGTTTTGGT 61.099 50.000 9.50 0.00 39.52 3.67
174 175 0.869068 CGCACATGTCCGTTTTGGTA 59.131 50.000 0.00 0.00 39.52 3.25
175 176 1.399215 CGCACATGTCCGTTTTGGTAC 60.399 52.381 0.00 0.00 39.52 3.34
176 177 1.068816 GCACATGTCCGTTTTGGTACC 60.069 52.381 4.43 4.43 39.52 3.34
177 178 1.538075 CACATGTCCGTTTTGGTACCC 59.462 52.381 10.07 0.00 39.52 3.69
178 179 1.143277 ACATGTCCGTTTTGGTACCCA 59.857 47.619 10.07 0.00 39.52 4.51
179 180 2.224917 ACATGTCCGTTTTGGTACCCAT 60.225 45.455 10.07 0.00 39.52 4.00
180 181 2.188062 TGTCCGTTTTGGTACCCATC 57.812 50.000 10.07 0.00 39.52 3.51
181 182 1.081094 GTCCGTTTTGGTACCCATCG 58.919 55.000 10.07 8.95 39.52 3.84
182 183 0.686224 TCCGTTTTGGTACCCATCGT 59.314 50.000 10.07 0.00 39.52 3.73
183 184 1.081094 CCGTTTTGGTACCCATCGTC 58.919 55.000 10.07 0.00 31.53 4.20
184 185 1.608542 CCGTTTTGGTACCCATCGTCA 60.609 52.381 10.07 0.00 31.53 4.35
185 186 1.461897 CGTTTTGGTACCCATCGTCAC 59.538 52.381 10.07 0.00 31.53 3.67
186 187 1.808343 GTTTTGGTACCCATCGTCACC 59.192 52.381 10.07 0.00 31.53 4.02
187 188 0.325602 TTTGGTACCCATCGTCACCC 59.674 55.000 10.07 0.00 31.53 4.61
188 189 1.555477 TTGGTACCCATCGTCACCCC 61.555 60.000 10.07 0.00 31.53 4.95
189 190 1.991167 GGTACCCATCGTCACCCCA 60.991 63.158 0.00 0.00 0.00 4.96
190 191 1.555477 GGTACCCATCGTCACCCCAA 61.555 60.000 0.00 0.00 0.00 4.12
191 192 0.325602 GTACCCATCGTCACCCCAAA 59.674 55.000 0.00 0.00 0.00 3.28
192 193 0.325602 TACCCATCGTCACCCCAAAC 59.674 55.000 0.00 0.00 0.00 2.93
193 194 1.074072 CCCATCGTCACCCCAAACA 59.926 57.895 0.00 0.00 0.00 2.83
194 195 0.960364 CCCATCGTCACCCCAAACAG 60.960 60.000 0.00 0.00 0.00 3.16
195 196 0.036164 CCATCGTCACCCCAAACAGA 59.964 55.000 0.00 0.00 0.00 3.41
203 204 1.106944 ACCCCAAACAGAAGCGTTGG 61.107 55.000 0.00 0.00 0.00 3.77
209 210 0.663153 AACAGAAGCGTTGGAGTTGC 59.337 50.000 0.00 0.00 0.00 4.17
217 218 2.026636 AGCGTTGGAGTTGCCCTTAATA 60.027 45.455 0.00 0.00 34.97 0.98
317 326 1.020861 TGTGTTGCTGCGCCTAGATG 61.021 55.000 4.18 0.00 0.00 2.90
321 330 2.664518 GCTGCGCCTAGATGAGCC 60.665 66.667 4.18 0.00 0.00 4.70
416 437 1.293498 GCACTGTCTGGATCGTGGT 59.707 57.895 0.00 0.00 0.00 4.16
417 438 1.016130 GCACTGTCTGGATCGTGGTG 61.016 60.000 0.00 0.00 0.00 4.17
418 439 0.390340 CACTGTCTGGATCGTGGTGG 60.390 60.000 0.00 0.00 0.00 4.61
425 446 2.732619 GGATCGTGGTGGGAGGGAC 61.733 68.421 0.00 0.00 0.00 4.46
517 541 1.226773 CGACCGGGTATTGACGTCC 60.227 63.158 14.12 0.00 0.00 4.79
556 586 2.091098 AAAAACCAAGTACCACCCCC 57.909 50.000 0.00 0.00 0.00 5.40
557 587 1.237661 AAAACCAAGTACCACCCCCT 58.762 50.000 0.00 0.00 0.00 4.79
624 663 3.071459 GCGGACAACGTGCAGATCG 62.071 63.158 0.00 0.00 46.52 3.69
639 678 2.673368 CAGATCGTTAAGCACTGTTCCC 59.327 50.000 0.00 0.00 0.00 3.97
669 708 1.299939 TGGCTCTCCACCTCTCTAGA 58.700 55.000 0.00 0.00 37.47 2.43
670 709 1.214175 TGGCTCTCCACCTCTCTAGAG 59.786 57.143 13.98 13.98 37.47 2.43
671 710 1.214424 GGCTCTCCACCTCTCTAGAGT 59.786 57.143 19.21 0.00 40.48 3.24
672 711 2.572290 GCTCTCCACCTCTCTAGAGTC 58.428 57.143 19.21 0.00 40.48 3.36
673 712 2.172717 GCTCTCCACCTCTCTAGAGTCT 59.827 54.545 19.21 0.00 40.48 3.24
674 713 3.389983 GCTCTCCACCTCTCTAGAGTCTA 59.610 52.174 19.21 0.00 40.48 2.59
675 714 4.503296 GCTCTCCACCTCTCTAGAGTCTAG 60.503 54.167 19.55 19.55 40.48 2.43
676 715 4.886163 TCTCCACCTCTCTAGAGTCTAGA 58.114 47.826 25.04 25.04 40.48 2.43
757 796 3.950397 AGACCTACTGAGAGTGAGAGTG 58.050 50.000 0.00 0.00 0.00 3.51
758 797 3.585289 AGACCTACTGAGAGTGAGAGTGA 59.415 47.826 0.00 0.00 0.00 3.41
759 798 3.938963 GACCTACTGAGAGTGAGAGTGAG 59.061 52.174 0.00 0.00 0.00 3.51
760 799 3.585289 ACCTACTGAGAGTGAGAGTGAGA 59.415 47.826 0.00 0.00 0.00 3.27
777 816 0.530288 AGAGAGAGAGCGGTCAAAGC 59.470 55.000 18.15 3.13 0.00 3.51
829 871 1.761198 GCCCATAACCGTCCTTCTACT 59.239 52.381 0.00 0.00 0.00 2.57
830 872 2.961062 GCCCATAACCGTCCTTCTACTA 59.039 50.000 0.00 0.00 0.00 1.82
831 873 3.243670 GCCCATAACCGTCCTTCTACTAC 60.244 52.174 0.00 0.00 0.00 2.73
832 874 3.956199 CCCATAACCGTCCTTCTACTACA 59.044 47.826 0.00 0.00 0.00 2.74
833 875 4.202090 CCCATAACCGTCCTTCTACTACAC 60.202 50.000 0.00 0.00 0.00 2.90
835 877 3.930634 AACCGTCCTTCTACTACACAC 57.069 47.619 0.00 0.00 0.00 3.82
836 878 1.808945 ACCGTCCTTCTACTACACACG 59.191 52.381 0.00 0.00 0.00 4.49
837 879 2.079158 CCGTCCTTCTACTACACACGA 58.921 52.381 0.00 0.00 0.00 4.35
838 880 2.095532 CCGTCCTTCTACTACACACGAG 59.904 54.545 0.00 0.00 0.00 4.18
839 881 2.475852 CGTCCTTCTACTACACACGAGC 60.476 54.545 0.00 0.00 0.00 5.03
1011 1056 2.579787 CTCGTCATGGGCGTCGAC 60.580 66.667 5.18 5.18 0.00 4.20
1236 1284 1.204941 GACAACCTCTGCGACTGGTAT 59.795 52.381 0.00 0.00 33.17 2.73
1323 1371 2.993264 AACCCCGTCACCGTCGAT 60.993 61.111 0.00 0.00 0.00 3.59
1422 1470 0.801067 GGATCTTCAACGTCGACGGG 60.801 60.000 37.89 29.13 44.95 5.28
1557 1605 1.808945 CTTGACTCTGCATGTTCCCAC 59.191 52.381 0.00 0.00 0.00 4.61
1558 1606 0.320683 TGACTCTGCATGTTCCCACG 60.321 55.000 0.00 0.00 0.00 4.94
1560 1608 0.320771 ACTCTGCATGTTCCCACGAC 60.321 55.000 0.00 0.00 0.00 4.34
1611 1659 2.262915 CTGGACCTGCAGGACGTC 59.737 66.667 39.19 24.93 38.94 4.34
1773 1821 0.110509 CGTTGCAGATCATATGGCGC 60.111 55.000 0.00 0.00 0.00 6.53
2553 2643 4.280019 GGGTTGCCGGTCAGGGTT 62.280 66.667 1.90 0.00 41.48 4.11
2622 2712 3.243267 ACGGAATAAACAACTGTTGGTGC 60.243 43.478 23.15 8.56 38.44 5.01
2655 2745 3.182967 CGCTCTTGTTCGCTTATTCTCT 58.817 45.455 0.00 0.00 0.00 3.10
2656 2746 3.241784 CGCTCTTGTTCGCTTATTCTCTC 59.758 47.826 0.00 0.00 0.00 3.20
2825 2919 0.798771 CGTACGCAGCTCTCCACTTC 60.799 60.000 0.52 0.00 0.00 3.01
2829 2923 0.735632 CGCAGCTCTCCACTTCAGAC 60.736 60.000 0.00 0.00 0.00 3.51
2909 3003 0.250513 ATCGGGTCAGGCTTCAGTTC 59.749 55.000 0.00 0.00 0.00 3.01
2961 3055 7.597386 ACGGAAAGACTATATATAAACCGTCC 58.403 38.462 0.00 8.73 44.96 4.79
2983 3078 1.475213 GGAAATACCCCTTGGCTCTCG 60.475 57.143 0.00 0.00 33.59 4.04
2986 3081 4.658786 ACCCCTTGGCTCTCGGGT 62.659 66.667 0.00 0.00 44.24 5.28
2996 3091 1.524002 CTCTCGGGTGGATGTGCAT 59.476 57.895 0.00 0.00 0.00 3.96
3003 3098 2.033299 CGGGTGGATGTGCATTTGATAC 59.967 50.000 0.00 0.00 0.00 2.24
3082 3183 2.313317 TGGACCTTCTGTTGTACTCGT 58.687 47.619 0.00 0.00 0.00 4.18
3091 3192 8.146412 ACCTTCTGTTGTACTCGTATAAAAAGT 58.854 33.333 0.00 0.00 0.00 2.66
3098 3199 8.479280 GTTGTACTCGTATAAAAAGTTTCACGA 58.521 33.333 11.64 11.64 36.97 4.35
3212 3851 2.844348 ACCCGGAATACCATGAAAGTCT 59.156 45.455 0.73 0.00 35.59 3.24
3220 3859 3.059352 ACCATGAAAGTCTTTCCTCGG 57.941 47.619 20.20 18.47 38.90 4.63
3221 3860 2.637872 ACCATGAAAGTCTTTCCTCGGA 59.362 45.455 20.20 4.13 38.90 4.55
3258 3897 7.548097 TGCAAGTACAACAAAAGGTCAAATTA 58.452 30.769 0.00 0.00 0.00 1.40
3259 3898 7.489757 TGCAAGTACAACAAAAGGTCAAATTAC 59.510 33.333 0.00 0.00 0.00 1.89
3260 3899 7.704899 GCAAGTACAACAAAAGGTCAAATTACT 59.295 33.333 0.00 0.00 0.00 2.24
3338 3977 0.029700 AAAAACTAACGCCCACACGC 59.970 50.000 0.00 0.00 36.19 5.34
3349 3988 2.174107 CACACGCGTGGCATCTTG 59.826 61.111 39.21 24.76 39.64 3.02
3350 3989 3.726517 ACACGCGTGGCATCTTGC 61.727 61.111 39.21 0.00 44.08 4.01
3359 3998 2.410469 GCATCTTGCACATCGCCC 59.590 61.111 0.00 0.00 44.26 6.13
3360 3999 2.409055 GCATCTTGCACATCGCCCA 61.409 57.895 0.00 0.00 44.26 5.36
3361 4000 1.430632 CATCTTGCACATCGCCCAC 59.569 57.895 0.00 0.00 41.33 4.61
3362 4001 1.002257 ATCTTGCACATCGCCCACA 60.002 52.632 0.00 0.00 41.33 4.17
3363 4002 1.308069 ATCTTGCACATCGCCCACAC 61.308 55.000 0.00 0.00 41.33 3.82
3364 4003 3.313007 CTTGCACATCGCCCACACG 62.313 63.158 0.00 0.00 41.33 4.49
3368 4007 4.760047 ACATCGCCCACACGCCTC 62.760 66.667 0.00 0.00 0.00 4.70
3373 4012 4.408821 GCCCACACGCCTCCATCA 62.409 66.667 0.00 0.00 0.00 3.07
3374 4013 2.436646 CCCACACGCCTCCATCAC 60.437 66.667 0.00 0.00 0.00 3.06
3375 4014 2.436646 CCACACGCCTCCATCACC 60.437 66.667 0.00 0.00 0.00 4.02
3376 4015 2.347114 CACACGCCTCCATCACCA 59.653 61.111 0.00 0.00 0.00 4.17
3377 4016 2.034879 CACACGCCTCCATCACCAC 61.035 63.158 0.00 0.00 0.00 4.16
3378 4017 2.217038 ACACGCCTCCATCACCACT 61.217 57.895 0.00 0.00 0.00 4.00
3379 4018 1.448540 CACGCCTCCATCACCACTC 60.449 63.158 0.00 0.00 0.00 3.51
3380 4019 1.913262 ACGCCTCCATCACCACTCA 60.913 57.895 0.00 0.00 0.00 3.41
3381 4020 1.267574 ACGCCTCCATCACCACTCAT 61.268 55.000 0.00 0.00 0.00 2.90
3382 4021 0.107508 CGCCTCCATCACCACTCATT 60.108 55.000 0.00 0.00 0.00 2.57
3383 4022 1.679944 CGCCTCCATCACCACTCATTT 60.680 52.381 0.00 0.00 0.00 2.32
3384 4023 2.450476 GCCTCCATCACCACTCATTTT 58.550 47.619 0.00 0.00 0.00 1.82
3385 4024 2.165030 GCCTCCATCACCACTCATTTTG 59.835 50.000 0.00 0.00 0.00 2.44
3386 4025 2.165030 CCTCCATCACCACTCATTTTGC 59.835 50.000 0.00 0.00 0.00 3.68
3387 4026 2.165030 CTCCATCACCACTCATTTTGCC 59.835 50.000 0.00 0.00 0.00 4.52
3388 4027 1.894466 CCATCACCACTCATTTTGCCA 59.106 47.619 0.00 0.00 0.00 4.92
3389 4028 2.353011 CCATCACCACTCATTTTGCCAC 60.353 50.000 0.00 0.00 0.00 5.01
3390 4029 0.950836 TCACCACTCATTTTGCCACG 59.049 50.000 0.00 0.00 0.00 4.94
3391 4030 0.667993 CACCACTCATTTTGCCACGT 59.332 50.000 0.00 0.00 0.00 4.49
3392 4031 1.876799 CACCACTCATTTTGCCACGTA 59.123 47.619 0.00 0.00 0.00 3.57
3393 4032 2.487762 CACCACTCATTTTGCCACGTAT 59.512 45.455 0.00 0.00 0.00 3.06
3394 4033 2.487762 ACCACTCATTTTGCCACGTATG 59.512 45.455 0.00 0.00 0.00 2.39
3395 4034 2.746904 CCACTCATTTTGCCACGTATGA 59.253 45.455 0.00 0.00 0.00 2.15
3396 4035 3.190327 CCACTCATTTTGCCACGTATGAA 59.810 43.478 0.00 0.00 0.00 2.57
3397 4036 4.158384 CACTCATTTTGCCACGTATGAAC 58.842 43.478 0.00 0.00 0.00 3.18
3398 4037 3.818210 ACTCATTTTGCCACGTATGAACA 59.182 39.130 0.00 0.00 0.00 3.18
3399 4038 4.083324 ACTCATTTTGCCACGTATGAACAG 60.083 41.667 0.00 0.00 0.00 3.16
3400 4039 4.068599 TCATTTTGCCACGTATGAACAGA 58.931 39.130 0.00 0.00 0.00 3.41
3401 4040 4.699735 TCATTTTGCCACGTATGAACAGAT 59.300 37.500 0.00 0.00 0.00 2.90
3402 4041 4.418013 TTTTGCCACGTATGAACAGATG 57.582 40.909 0.00 0.00 0.00 2.90
3403 4042 3.326836 TTGCCACGTATGAACAGATGA 57.673 42.857 0.00 0.00 0.00 2.92
3404 4043 2.616960 TGCCACGTATGAACAGATGAC 58.383 47.619 0.00 0.00 0.00 3.06
3405 4044 2.028567 TGCCACGTATGAACAGATGACA 60.029 45.455 0.00 0.00 0.00 3.58
3406 4045 3.198068 GCCACGTATGAACAGATGACAT 58.802 45.455 0.00 0.00 0.00 3.06
3407 4046 3.246226 GCCACGTATGAACAGATGACATC 59.754 47.826 7.39 7.39 0.00 3.06
3408 4047 4.432712 CCACGTATGAACAGATGACATCA 58.567 43.478 17.57 0.00 0.00 3.07
3409 4048 4.505556 CCACGTATGAACAGATGACATCAG 59.494 45.833 17.57 11.95 0.00 2.90
3410 4049 4.026228 CACGTATGAACAGATGACATCAGC 60.026 45.833 17.57 4.42 0.00 4.26
3411 4050 4.114794 CGTATGAACAGATGACATCAGCA 58.885 43.478 17.57 9.50 34.14 4.41
3412 4051 4.208666 CGTATGAACAGATGACATCAGCAG 59.791 45.833 17.57 6.89 34.14 4.24
3413 4052 2.981898 TGAACAGATGACATCAGCAGG 58.018 47.619 17.57 4.29 34.14 4.85
3414 4053 2.568509 TGAACAGATGACATCAGCAGGA 59.431 45.455 17.57 0.00 34.14 3.86
3415 4054 3.008266 TGAACAGATGACATCAGCAGGAA 59.992 43.478 17.57 0.00 34.14 3.36
3416 4055 3.928005 ACAGATGACATCAGCAGGAAT 57.072 42.857 17.57 0.00 34.14 3.01
3417 4056 3.806380 ACAGATGACATCAGCAGGAATC 58.194 45.455 17.57 0.00 34.14 2.52
3418 4057 3.199289 ACAGATGACATCAGCAGGAATCA 59.801 43.478 17.57 0.00 34.14 2.57
3419 4058 4.141459 ACAGATGACATCAGCAGGAATCAT 60.141 41.667 17.57 7.70 37.84 2.45
3420 4059 4.822350 CAGATGACATCAGCAGGAATCATT 59.178 41.667 17.57 0.00 36.23 2.57
3421 4060 5.299531 CAGATGACATCAGCAGGAATCATTT 59.700 40.000 17.57 3.32 36.23 2.32
3422 4061 5.892119 AGATGACATCAGCAGGAATCATTTT 59.108 36.000 17.57 0.00 36.23 1.82
3423 4062 5.319140 TGACATCAGCAGGAATCATTTTG 57.681 39.130 0.00 0.00 0.00 2.44
3424 4063 4.158949 TGACATCAGCAGGAATCATTTTGG 59.841 41.667 0.00 0.00 0.00 3.28
3425 4064 4.091549 ACATCAGCAGGAATCATTTTGGT 58.908 39.130 0.00 0.00 0.00 3.67
3426 4065 4.529377 ACATCAGCAGGAATCATTTTGGTT 59.471 37.500 0.00 0.00 0.00 3.67
3427 4066 5.012354 ACATCAGCAGGAATCATTTTGGTTT 59.988 36.000 0.00 0.00 0.00 3.27
3428 4067 5.549742 TCAGCAGGAATCATTTTGGTTTT 57.450 34.783 0.00 0.00 0.00 2.43
3429 4068 5.540911 TCAGCAGGAATCATTTTGGTTTTC 58.459 37.500 0.00 0.00 0.00 2.29
3430 4069 4.386652 CAGCAGGAATCATTTTGGTTTTCG 59.613 41.667 0.00 0.00 0.00 3.46
3431 4070 3.679502 GCAGGAATCATTTTGGTTTTCGG 59.320 43.478 0.00 0.00 0.00 4.30
3432 4071 3.679502 CAGGAATCATTTTGGTTTTCGGC 59.320 43.478 0.00 0.00 0.00 5.54
3433 4072 3.578282 AGGAATCATTTTGGTTTTCGGCT 59.422 39.130 0.00 0.00 0.00 5.52
3434 4073 4.040339 AGGAATCATTTTGGTTTTCGGCTT 59.960 37.500 0.00 0.00 0.00 4.35
3435 4074 5.245075 AGGAATCATTTTGGTTTTCGGCTTA 59.755 36.000 0.00 0.00 0.00 3.09
3436 4075 5.929415 GGAATCATTTTGGTTTTCGGCTTAA 59.071 36.000 0.00 0.00 0.00 1.85
3437 4076 6.425417 GGAATCATTTTGGTTTTCGGCTTAAA 59.575 34.615 0.00 0.00 0.00 1.52
3438 4077 7.041712 GGAATCATTTTGGTTTTCGGCTTAAAA 60.042 33.333 0.00 0.00 0.00 1.52
3439 4078 7.793927 ATCATTTTGGTTTTCGGCTTAAAAA 57.206 28.000 0.00 0.00 30.53 1.94
3440 4079 7.793927 TCATTTTGGTTTTCGGCTTAAAAAT 57.206 28.000 0.00 0.00 30.53 1.82
3441 4080 7.634522 TCATTTTGGTTTTCGGCTTAAAAATG 58.365 30.769 10.27 10.27 41.49 2.32
3442 4081 6.986904 TTTTGGTTTTCGGCTTAAAAATGT 57.013 29.167 0.00 0.00 30.53 2.71
3443 4082 6.986904 TTTGGTTTTCGGCTTAAAAATGTT 57.013 29.167 0.00 0.00 30.53 2.71
3444 4083 6.986904 TTGGTTTTCGGCTTAAAAATGTTT 57.013 29.167 0.00 0.00 30.53 2.83
3445 4084 6.986904 TGGTTTTCGGCTTAAAAATGTTTT 57.013 29.167 0.00 0.00 30.53 2.43
3446 4085 8.488651 TTGGTTTTCGGCTTAAAAATGTTTTA 57.511 26.923 0.00 0.00 30.53 1.52
3447 4086 8.664211 TGGTTTTCGGCTTAAAAATGTTTTAT 57.336 26.923 0.00 0.00 30.53 1.40
3448 4087 8.766151 TGGTTTTCGGCTTAAAAATGTTTTATC 58.234 29.630 0.00 0.00 30.53 1.75
3449 4088 8.984764 GGTTTTCGGCTTAAAAATGTTTTATCT 58.015 29.630 0.00 0.00 30.53 1.98
3464 4103 9.643693 AATGTTTTATCTTACTTTTCATGCCAG 57.356 29.630 0.00 0.00 0.00 4.85
3485 4124 1.341531 GTGCATATACACCCGAGAGCT 59.658 52.381 0.00 0.00 34.35 4.09
3487 4126 3.005472 GTGCATATACACCCGAGAGCTAA 59.995 47.826 0.00 0.00 34.35 3.09
3488 4127 3.639561 TGCATATACACCCGAGAGCTAAA 59.360 43.478 0.00 0.00 0.00 1.85
3489 4128 3.988517 GCATATACACCCGAGAGCTAAAC 59.011 47.826 0.00 0.00 0.00 2.01
3491 4130 2.226962 TACACCCGAGAGCTAAACCT 57.773 50.000 0.00 0.00 0.00 3.50
3492 4131 0.896226 ACACCCGAGAGCTAAACCTC 59.104 55.000 0.00 0.00 0.00 3.85
3493 4132 0.175989 CACCCGAGAGCTAAACCTCC 59.824 60.000 0.00 0.00 32.17 4.30
3494 4133 1.321074 ACCCGAGAGCTAAACCTCCG 61.321 60.000 0.00 0.00 32.17 4.63
3495 4134 1.227002 CCGAGAGCTAAACCTCCGC 60.227 63.158 0.00 0.00 32.17 5.54
3496 4135 1.668101 CCGAGAGCTAAACCTCCGCT 61.668 60.000 0.00 0.00 36.57 5.52
3497 4136 0.173708 CGAGAGCTAAACCTCCGCTT 59.826 55.000 0.00 0.00 33.47 4.68
3498 4137 1.799548 CGAGAGCTAAACCTCCGCTTC 60.800 57.143 0.00 0.00 33.47 3.86
3499 4138 0.537653 AGAGCTAAACCTCCGCTTCC 59.462 55.000 0.00 0.00 33.47 3.46
3500 4139 0.249398 GAGCTAAACCTCCGCTTCCA 59.751 55.000 0.00 0.00 33.47 3.53
3501 4140 0.690762 AGCTAAACCTCCGCTTCCAA 59.309 50.000 0.00 0.00 0.00 3.53
3502 4141 0.803117 GCTAAACCTCCGCTTCCAAC 59.197 55.000 0.00 0.00 0.00 3.77
3503 4142 1.610886 GCTAAACCTCCGCTTCCAACT 60.611 52.381 0.00 0.00 0.00 3.16
3504 4143 2.076863 CTAAACCTCCGCTTCCAACTG 58.923 52.381 0.00 0.00 0.00 3.16
3505 4144 0.472471 AAACCTCCGCTTCCAACTGA 59.528 50.000 0.00 0.00 0.00 3.41
3506 4145 0.250338 AACCTCCGCTTCCAACTGAC 60.250 55.000 0.00 0.00 0.00 3.51
3507 4146 1.371183 CCTCCGCTTCCAACTGACA 59.629 57.895 0.00 0.00 0.00 3.58
3508 4147 0.671781 CCTCCGCTTCCAACTGACAG 60.672 60.000 0.00 0.00 0.00 3.51
3509 4148 0.671781 CTCCGCTTCCAACTGACAGG 60.672 60.000 7.51 0.00 0.00 4.00
3510 4149 2.328099 CCGCTTCCAACTGACAGGC 61.328 63.158 7.51 0.00 0.00 4.85
3511 4150 2.328099 CGCTTCCAACTGACAGGCC 61.328 63.158 7.51 0.00 0.00 5.19
3512 4151 1.228245 GCTTCCAACTGACAGGCCA 60.228 57.895 5.01 0.00 0.00 5.36
3513 4152 1.239968 GCTTCCAACTGACAGGCCAG 61.240 60.000 5.01 0.00 39.93 4.85
3514 4153 0.607489 CTTCCAACTGACAGGCCAGG 60.607 60.000 5.01 0.00 38.44 4.45
3515 4154 1.352622 TTCCAACTGACAGGCCAGGT 61.353 55.000 5.01 1.55 38.44 4.00
3516 4155 1.151450 CCAACTGACAGGCCAGGTT 59.849 57.895 5.01 0.00 38.44 3.50
3517 4156 0.468029 CCAACTGACAGGCCAGGTTT 60.468 55.000 5.01 0.00 38.44 3.27
3518 4157 0.670162 CAACTGACAGGCCAGGTTTG 59.330 55.000 5.01 0.72 38.44 2.93
3519 4158 0.258774 AACTGACAGGCCAGGTTTGT 59.741 50.000 5.01 0.00 38.44 2.83
3522 4161 1.827789 GACAGGCCAGGTTTGTGCA 60.828 57.895 5.01 0.00 0.00 4.57
3526 4165 0.687427 AGGCCAGGTTTGTGCACTTT 60.687 50.000 19.41 0.00 0.00 2.66
3530 4169 1.956477 CCAGGTTTGTGCACTTTAGCT 59.044 47.619 19.41 14.27 34.99 3.32
3536 4175 3.889196 TTGTGCACTTTAGCTTAACGG 57.111 42.857 19.41 0.00 34.99 4.44
3574 4213 7.998964 AGGGGAAATACGAGACATATTTTGAAT 59.001 33.333 0.00 0.00 33.39 2.57
3576 4215 7.591426 GGGAAATACGAGACATATTTTGAATGC 59.409 37.037 0.00 0.00 33.39 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.680237 TCGCGGTCACTTGCTGGG 62.680 66.667 6.13 0.00 0.00 4.45
31 32 3.114616 CTCGCGGTCACTTGCTGG 61.115 66.667 6.13 0.00 0.00 4.85
32 33 3.782244 GCTCGCGGTCACTTGCTG 61.782 66.667 6.13 0.00 0.00 4.41
96 97 1.508808 TTAAAACGTCCGCTGCACCC 61.509 55.000 0.00 0.00 0.00 4.61
97 98 0.110373 CTTAAAACGTCCGCTGCACC 60.110 55.000 0.00 0.00 0.00 5.01
98 99 0.110373 CCTTAAAACGTCCGCTGCAC 60.110 55.000 0.00 0.00 0.00 4.57
99 100 0.533308 ACCTTAAAACGTCCGCTGCA 60.533 50.000 0.00 0.00 0.00 4.41
100 101 0.589708 AACCTTAAAACGTCCGCTGC 59.410 50.000 0.00 0.00 0.00 5.25
101 102 1.069500 CCAACCTTAAAACGTCCGCTG 60.069 52.381 0.00 0.00 0.00 5.18
102 103 1.232119 CCAACCTTAAAACGTCCGCT 58.768 50.000 0.00 0.00 0.00 5.52
103 104 0.239082 CCCAACCTTAAAACGTCCGC 59.761 55.000 0.00 0.00 0.00 5.54
104 105 0.239082 GCCCAACCTTAAAACGTCCG 59.761 55.000 0.00 0.00 0.00 4.79
105 106 0.239082 CGCCCAACCTTAAAACGTCC 59.761 55.000 0.00 0.00 0.00 4.79
106 107 0.386352 GCGCCCAACCTTAAAACGTC 60.386 55.000 0.00 0.00 0.00 4.34
107 108 1.655885 GCGCCCAACCTTAAAACGT 59.344 52.632 0.00 0.00 0.00 3.99
108 109 1.081041 GGCGCCCAACCTTAAAACG 60.081 57.895 18.11 0.00 0.00 3.60
109 110 0.319211 GTGGCGCCCAACCTTAAAAC 60.319 55.000 26.77 7.29 34.18 2.43
110 111 1.797211 CGTGGCGCCCAACCTTAAAA 61.797 55.000 26.77 0.00 34.18 1.52
111 112 2.262303 CGTGGCGCCCAACCTTAAA 61.262 57.895 26.77 0.00 34.18 1.52
112 113 2.670251 CGTGGCGCCCAACCTTAA 60.670 61.111 26.77 0.00 34.18 1.85
113 114 2.109517 TAACGTGGCGCCCAACCTTA 62.110 55.000 26.77 13.47 34.18 2.69
114 115 3.479127 TAACGTGGCGCCCAACCTT 62.479 57.895 26.77 14.49 34.18 3.50
115 116 3.894547 CTAACGTGGCGCCCAACCT 62.895 63.158 26.77 7.21 34.18 3.50
116 117 3.428282 CTAACGTGGCGCCCAACC 61.428 66.667 26.77 8.28 34.18 3.77
117 118 3.428282 CCTAACGTGGCGCCCAAC 61.428 66.667 26.77 16.04 34.18 3.77
129 130 3.849953 CTGTTCGCGGCGCCTAAC 61.850 66.667 27.89 27.89 0.00 2.34
130 131 3.576932 TTCTGTTCGCGGCGCCTAA 62.577 57.895 27.87 18.13 0.00 2.69
131 132 3.576932 TTTCTGTTCGCGGCGCCTA 62.577 57.895 27.87 12.39 0.00 3.93
132 133 4.980805 TTTCTGTTCGCGGCGCCT 62.981 61.111 27.87 0.00 0.00 5.52
133 134 4.736631 GTTTCTGTTCGCGGCGCC 62.737 66.667 27.87 19.07 0.00 6.53
134 135 4.736631 GGTTTCTGTTCGCGGCGC 62.737 66.667 24.21 24.21 0.00 6.53
135 136 4.424430 CGGTTTCTGTTCGCGGCG 62.424 66.667 17.70 17.70 0.00 6.46
136 137 4.084888 CCGGTTTCTGTTCGCGGC 62.085 66.667 6.13 0.00 0.00 6.53
137 138 2.356553 TCCGGTTTCTGTTCGCGG 60.357 61.111 6.13 0.00 0.00 6.46
138 139 2.851104 GTCCGGTTTCTGTTCGCG 59.149 61.111 0.00 0.00 0.00 5.87
139 140 2.851104 CGTCCGGTTTCTGTTCGC 59.149 61.111 0.00 0.00 0.00 4.70
140 141 1.952133 TGCGTCCGGTTTCTGTTCG 60.952 57.895 0.00 0.00 0.00 3.95
141 142 1.155424 TGTGCGTCCGGTTTCTGTTC 61.155 55.000 0.00 0.00 0.00 3.18
142 143 0.534203 ATGTGCGTCCGGTTTCTGTT 60.534 50.000 0.00 0.00 0.00 3.16
143 144 1.070786 ATGTGCGTCCGGTTTCTGT 59.929 52.632 0.00 0.00 0.00 3.41
144 145 1.227999 ACATGTGCGTCCGGTTTCTG 61.228 55.000 0.00 0.00 0.00 3.02
145 146 0.949105 GACATGTGCGTCCGGTTTCT 60.949 55.000 1.15 0.00 0.00 2.52
146 147 1.495951 GACATGTGCGTCCGGTTTC 59.504 57.895 1.15 0.00 0.00 2.78
147 148 1.964373 GGACATGTGCGTCCGGTTT 60.964 57.895 1.15 0.00 45.77 3.27
148 149 2.358247 GGACATGTGCGTCCGGTT 60.358 61.111 1.15 0.00 45.77 4.44
156 157 1.068816 GGTACCAAAACGGACATGTGC 60.069 52.381 1.15 4.73 38.63 4.57
157 158 2.981400 GGTACCAAAACGGACATGTG 57.019 50.000 1.15 0.00 38.63 3.21
172 173 0.325602 TTTGGGGTGACGATGGGTAC 59.674 55.000 0.00 0.00 0.00 3.34
173 174 0.325602 GTTTGGGGTGACGATGGGTA 59.674 55.000 0.00 0.00 0.00 3.69
174 175 1.074248 GTTTGGGGTGACGATGGGT 59.926 57.895 0.00 0.00 0.00 4.51
175 176 0.960364 CTGTTTGGGGTGACGATGGG 60.960 60.000 0.00 0.00 0.00 4.00
176 177 0.036164 TCTGTTTGGGGTGACGATGG 59.964 55.000 0.00 0.00 0.00 3.51
177 178 1.806542 CTTCTGTTTGGGGTGACGATG 59.193 52.381 0.00 0.00 0.00 3.84
178 179 1.882352 GCTTCTGTTTGGGGTGACGAT 60.882 52.381 0.00 0.00 0.00 3.73
179 180 0.534203 GCTTCTGTTTGGGGTGACGA 60.534 55.000 0.00 0.00 0.00 4.20
180 181 1.841663 CGCTTCTGTTTGGGGTGACG 61.842 60.000 0.00 0.00 0.00 4.35
181 182 0.818040 ACGCTTCTGTTTGGGGTGAC 60.818 55.000 0.00 0.00 0.00 3.67
182 183 0.106918 AACGCTTCTGTTTGGGGTGA 60.107 50.000 0.00 0.00 0.00 4.02
183 184 0.030638 CAACGCTTCTGTTTGGGGTG 59.969 55.000 0.00 0.00 0.00 4.61
184 185 1.106944 CCAACGCTTCTGTTTGGGGT 61.107 55.000 0.00 0.00 0.00 4.95
185 186 0.821711 TCCAACGCTTCTGTTTGGGG 60.822 55.000 0.00 0.00 0.00 4.96
186 187 0.593128 CTCCAACGCTTCTGTTTGGG 59.407 55.000 0.00 0.00 0.00 4.12
187 188 1.308998 ACTCCAACGCTTCTGTTTGG 58.691 50.000 0.00 0.00 0.00 3.28
188 189 2.719798 CAACTCCAACGCTTCTGTTTG 58.280 47.619 0.00 0.00 0.00 2.93
189 190 1.065551 GCAACTCCAACGCTTCTGTTT 59.934 47.619 0.00 0.00 0.00 2.83
190 191 0.663153 GCAACTCCAACGCTTCTGTT 59.337 50.000 0.00 0.00 0.00 3.16
191 192 1.166531 GGCAACTCCAACGCTTCTGT 61.167 55.000 0.00 0.00 34.01 3.41
192 193 1.576421 GGCAACTCCAACGCTTCTG 59.424 57.895 0.00 0.00 34.01 3.02
193 194 1.600916 GGGCAACTCCAACGCTTCT 60.601 57.895 0.00 0.00 36.21 2.85
194 195 1.172812 AAGGGCAACTCCAACGCTTC 61.173 55.000 0.00 0.00 36.21 3.86
195 196 0.109723 TAAGGGCAACTCCAACGCTT 59.890 50.000 0.00 0.00 39.54 4.68
203 204 0.935196 CGGCGTATTAAGGGCAACTC 59.065 55.000 0.00 0.00 35.92 3.01
209 210 1.663702 CTCCGCGGCGTATTAAGGG 60.664 63.158 23.51 0.00 0.00 3.95
217 218 2.615262 GATCTTTCTCTCCGCGGCGT 62.615 60.000 23.51 0.00 0.00 5.68
290 292 4.695231 CAGCAACACAGCAGCGCC 62.695 66.667 2.29 0.00 36.85 6.53
416 437 2.930019 CAGTGCCTGTCCCTCCCA 60.930 66.667 0.00 0.00 0.00 4.37
417 438 4.416738 GCAGTGCCTGTCCCTCCC 62.417 72.222 2.85 0.00 33.43 4.30
418 439 3.618780 CTGCAGTGCCTGTCCCTCC 62.619 68.421 13.72 0.00 33.43 4.30
556 586 2.923035 ACCGTCACCCACCTCCAG 60.923 66.667 0.00 0.00 0.00 3.86
557 587 3.238497 CACCGTCACCCACCTCCA 61.238 66.667 0.00 0.00 0.00 3.86
639 678 1.134310 TGGAGAGCCACATGTGCTATG 60.134 52.381 20.81 7.87 39.92 2.23
671 710 3.090037 GCAGTTGGTGGTCTAGTCTAGA 58.910 50.000 5.41 5.41 0.00 2.43
672 711 3.093057 AGCAGTTGGTGGTCTAGTCTAG 58.907 50.000 0.00 0.00 27.31 2.43
673 712 3.170991 AGCAGTTGGTGGTCTAGTCTA 57.829 47.619 0.00 0.00 27.31 2.59
674 713 2.016905 AGCAGTTGGTGGTCTAGTCT 57.983 50.000 0.00 0.00 27.31 3.24
675 714 2.561419 TGTAGCAGTTGGTGGTCTAGTC 59.439 50.000 0.00 0.00 38.14 2.59
676 715 2.563179 CTGTAGCAGTTGGTGGTCTAGT 59.437 50.000 0.00 0.00 38.14 2.57
688 727 1.753078 TCGATCGGGCTGTAGCAGT 60.753 57.895 16.41 0.00 44.36 4.40
727 766 1.205893 CTCAGTAGGTCTGGGCAAGTC 59.794 57.143 0.00 0.00 43.76 3.01
730 769 1.203187 ACTCTCAGTAGGTCTGGGCAA 60.203 52.381 0.00 0.00 43.87 4.52
757 796 1.469079 GCTTTGACCGCTCTCTCTCTC 60.469 57.143 0.00 0.00 0.00 3.20
758 797 0.530288 GCTTTGACCGCTCTCTCTCT 59.470 55.000 0.00 0.00 0.00 3.10
759 798 0.459411 GGCTTTGACCGCTCTCTCTC 60.459 60.000 0.00 0.00 0.00 3.20
760 799 1.188219 TGGCTTTGACCGCTCTCTCT 61.188 55.000 0.00 0.00 0.00 3.10
777 816 0.389426 CCGTGTAGTTTCCCTCGTGG 60.389 60.000 0.00 0.00 0.00 4.94
829 871 1.002990 TCTCCTCGGCTCGTGTGTA 60.003 57.895 0.00 0.00 0.00 2.90
830 872 2.282251 TCTCCTCGGCTCGTGTGT 60.282 61.111 0.00 0.00 0.00 3.72
831 873 2.487428 CTCTCCTCGGCTCGTGTG 59.513 66.667 0.00 0.00 0.00 3.82
832 874 2.752238 CCTCTCCTCGGCTCGTGT 60.752 66.667 0.00 0.00 0.00 4.49
833 875 3.522731 CCCTCTCCTCGGCTCGTG 61.523 72.222 0.00 0.00 0.00 4.35
898 941 2.262915 GCGGTGAGGTGAGGTGAG 59.737 66.667 0.00 0.00 0.00 3.51
899 942 3.311110 GGCGGTGAGGTGAGGTGA 61.311 66.667 0.00 0.00 0.00 4.02
900 943 4.394712 GGGCGGTGAGGTGAGGTG 62.395 72.222 0.00 0.00 0.00 4.00
942 985 2.428902 TACCGTACGTGCGTGTGC 60.429 61.111 24.09 0.00 43.20 4.57
957 1002 3.247886 GGCGCTACCTGCTTTTTATCTAC 59.752 47.826 7.64 0.00 40.11 2.59
1173 1221 3.141488 AGGTAGGCCTCGCAGACG 61.141 66.667 9.68 0.00 42.67 4.18
1422 1470 4.980805 TGGAACAGCCACGCGTCC 62.981 66.667 9.86 6.32 43.33 4.79
1557 1605 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
1558 1606 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
1560 1608 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
1857 1905 3.579626 GAGCTTGTGTCGTTGCCGC 62.580 63.158 0.00 0.00 0.00 6.53
2622 2712 3.417275 AAGAGCGCGATCGTCAGGG 62.417 63.158 19.77 2.66 38.14 4.45
2655 2745 1.957186 CAAAGGACGAAACGGGCGA 60.957 57.895 0.00 0.00 0.00 5.54
2656 2746 2.554272 CAAAGGACGAAACGGGCG 59.446 61.111 0.00 0.00 0.00 6.13
2825 2919 2.545731 TCGATCTCGACTCTCAGTCTG 58.454 52.381 0.00 0.00 42.92 3.51
2909 3003 2.695055 CACATAACAGTCGCGCGG 59.305 61.111 31.69 16.94 0.00 6.46
2952 3046 2.689553 GGTATTTCCCGGACGGTTTA 57.310 50.000 0.73 0.00 0.00 2.01
2983 3078 2.033299 CGTATCAAATGCACATCCACCC 59.967 50.000 0.00 0.00 0.00 4.61
2986 3081 5.635417 TTTTCGTATCAAATGCACATCCA 57.365 34.783 0.00 0.00 0.00 3.41
3047 3148 8.150296 ACAGAAGGTCCAAATTTATTTCCAAAG 58.850 33.333 0.00 0.00 0.00 2.77
3050 3151 7.070571 ACAACAGAAGGTCCAAATTTATTTCCA 59.929 33.333 0.00 0.00 0.00 3.53
3064 3165 8.524870 TTTTTATACGAGTACAACAGAAGGTC 57.475 34.615 0.00 0.00 0.00 3.85
3111 3212 4.891168 TGGGTTTTCTTCCCTAAAGTTGAC 59.109 41.667 2.65 0.00 44.84 3.18
3195 3834 5.294552 CGAGGAAAGACTTTCATGGTATTCC 59.705 44.000 25.38 9.04 41.43 3.01
3212 3851 4.457949 GCATAAAAGGTTTCTCCGAGGAAA 59.542 41.667 0.00 0.00 41.99 3.13
3220 3859 7.422399 TGTTGTACTTGCATAAAAGGTTTCTC 58.578 34.615 0.00 0.00 0.00 2.87
3221 3860 7.341445 TGTTGTACTTGCATAAAAGGTTTCT 57.659 32.000 0.00 0.00 0.00 2.52
3321 3960 3.336566 GCGTGTGGGCGTTAGTTT 58.663 55.556 0.00 0.00 0.00 2.66
3332 3971 2.174107 CAAGATGCCACGCGTGTG 59.826 61.111 34.81 26.49 46.00 3.82
3333 3972 3.726517 GCAAGATGCCACGCGTGT 61.727 61.111 34.81 19.33 37.42 4.49
3334 3973 3.725459 TGCAAGATGCCACGCGTG 61.725 61.111 31.77 31.77 44.23 5.34
3335 3974 3.726517 GTGCAAGATGCCACGCGT 61.727 61.111 5.58 5.58 44.23 6.01
3336 3975 2.908088 GATGTGCAAGATGCCACGCG 62.908 60.000 3.53 3.53 44.23 6.01
3337 3976 1.226491 GATGTGCAAGATGCCACGC 60.226 57.895 0.00 0.00 44.23 5.34
3338 3977 1.061411 CGATGTGCAAGATGCCACG 59.939 57.895 0.00 2.08 44.23 4.94
3339 3978 1.226491 GCGATGTGCAAGATGCCAC 60.226 57.895 0.00 0.00 44.23 5.01
3340 3979 3.189921 GCGATGTGCAAGATGCCA 58.810 55.556 0.00 0.00 44.23 4.92
3356 3995 4.408821 TGATGGAGGCGTGTGGGC 62.409 66.667 0.00 0.00 42.69 5.36
3357 3996 2.436646 GTGATGGAGGCGTGTGGG 60.437 66.667 0.00 0.00 0.00 4.61
3358 3997 2.436646 GGTGATGGAGGCGTGTGG 60.437 66.667 0.00 0.00 0.00 4.17
3359 3998 2.034879 GTGGTGATGGAGGCGTGTG 61.035 63.158 0.00 0.00 0.00 3.82
3360 3999 2.172483 GAGTGGTGATGGAGGCGTGT 62.172 60.000 0.00 0.00 0.00 4.49
3361 4000 1.448540 GAGTGGTGATGGAGGCGTG 60.449 63.158 0.00 0.00 0.00 5.34
3362 4001 1.267574 ATGAGTGGTGATGGAGGCGT 61.268 55.000 0.00 0.00 0.00 5.68
3363 4002 0.107508 AATGAGTGGTGATGGAGGCG 60.108 55.000 0.00 0.00 0.00 5.52
3364 4003 2.134789 AAATGAGTGGTGATGGAGGC 57.865 50.000 0.00 0.00 0.00 4.70
3365 4004 2.165030 GCAAAATGAGTGGTGATGGAGG 59.835 50.000 0.00 0.00 0.00 4.30
3366 4005 2.165030 GGCAAAATGAGTGGTGATGGAG 59.835 50.000 0.00 0.00 0.00 3.86
3367 4006 2.170166 GGCAAAATGAGTGGTGATGGA 58.830 47.619 0.00 0.00 0.00 3.41
3368 4007 1.894466 TGGCAAAATGAGTGGTGATGG 59.106 47.619 0.00 0.00 0.00 3.51
3369 4008 2.669113 CGTGGCAAAATGAGTGGTGATG 60.669 50.000 0.00 0.00 0.00 3.07
3370 4009 1.541147 CGTGGCAAAATGAGTGGTGAT 59.459 47.619 0.00 0.00 0.00 3.06
3371 4010 0.950836 CGTGGCAAAATGAGTGGTGA 59.049 50.000 0.00 0.00 0.00 4.02
3372 4011 0.667993 ACGTGGCAAAATGAGTGGTG 59.332 50.000 0.00 0.00 0.00 4.17
3373 4012 2.264005 TACGTGGCAAAATGAGTGGT 57.736 45.000 0.00 0.00 0.00 4.16
3374 4013 2.746904 TCATACGTGGCAAAATGAGTGG 59.253 45.455 0.00 0.00 0.00 4.00
3375 4014 4.158384 GTTCATACGTGGCAAAATGAGTG 58.842 43.478 0.00 0.00 30.53 3.51
3376 4015 3.818210 TGTTCATACGTGGCAAAATGAGT 59.182 39.130 0.00 0.00 30.53 3.41
3377 4016 4.154015 TCTGTTCATACGTGGCAAAATGAG 59.846 41.667 0.00 0.00 30.53 2.90
3378 4017 4.068599 TCTGTTCATACGTGGCAAAATGA 58.931 39.130 0.00 0.00 0.00 2.57
3379 4018 4.418013 TCTGTTCATACGTGGCAAAATG 57.582 40.909 0.00 0.00 0.00 2.32
3380 4019 4.699735 TCATCTGTTCATACGTGGCAAAAT 59.300 37.500 0.00 0.00 0.00 1.82
3381 4020 4.068599 TCATCTGTTCATACGTGGCAAAA 58.931 39.130 0.00 0.00 0.00 2.44
3382 4021 3.435327 GTCATCTGTTCATACGTGGCAAA 59.565 43.478 0.00 0.00 0.00 3.68
3383 4022 3.000041 GTCATCTGTTCATACGTGGCAA 59.000 45.455 0.00 0.00 0.00 4.52
3384 4023 2.028567 TGTCATCTGTTCATACGTGGCA 60.029 45.455 0.00 0.00 0.00 4.92
3385 4024 2.616960 TGTCATCTGTTCATACGTGGC 58.383 47.619 0.00 0.00 0.00 5.01
3386 4025 4.432712 TGATGTCATCTGTTCATACGTGG 58.567 43.478 13.90 0.00 0.00 4.94
3387 4026 4.026228 GCTGATGTCATCTGTTCATACGTG 60.026 45.833 17.91 0.00 0.00 4.49
3388 4027 4.115516 GCTGATGTCATCTGTTCATACGT 58.884 43.478 17.91 0.00 0.00 3.57
3389 4028 4.114794 TGCTGATGTCATCTGTTCATACG 58.885 43.478 17.91 0.00 0.00 3.06
3390 4029 4.510711 CCTGCTGATGTCATCTGTTCATAC 59.489 45.833 17.91 4.40 0.00 2.39
3391 4030 4.406649 TCCTGCTGATGTCATCTGTTCATA 59.593 41.667 17.91 2.22 0.00 2.15
3392 4031 3.199289 TCCTGCTGATGTCATCTGTTCAT 59.801 43.478 17.91 0.00 0.00 2.57
3393 4032 2.568509 TCCTGCTGATGTCATCTGTTCA 59.431 45.455 17.91 9.59 0.00 3.18
3394 4033 3.257469 TCCTGCTGATGTCATCTGTTC 57.743 47.619 17.91 6.13 0.00 3.18
3395 4034 3.708403 TTCCTGCTGATGTCATCTGTT 57.292 42.857 17.91 0.00 0.00 3.16
3396 4035 3.199289 TGATTCCTGCTGATGTCATCTGT 59.801 43.478 17.91 0.95 0.00 3.41
3397 4036 3.805207 TGATTCCTGCTGATGTCATCTG 58.195 45.455 13.90 13.85 0.00 2.90
3398 4037 4.708576 ATGATTCCTGCTGATGTCATCT 57.291 40.909 13.90 0.00 28.12 2.90
3399 4038 5.769484 AAATGATTCCTGCTGATGTCATC 57.231 39.130 5.83 5.83 31.29 2.92
3400 4039 5.163447 CCAAAATGATTCCTGCTGATGTCAT 60.163 40.000 0.00 0.00 32.89 3.06
3401 4040 4.158949 CCAAAATGATTCCTGCTGATGTCA 59.841 41.667 0.00 0.00 0.00 3.58
3402 4041 4.159135 ACCAAAATGATTCCTGCTGATGTC 59.841 41.667 0.00 0.00 0.00 3.06
3403 4042 4.091549 ACCAAAATGATTCCTGCTGATGT 58.908 39.130 0.00 0.00 0.00 3.06
3404 4043 4.730949 ACCAAAATGATTCCTGCTGATG 57.269 40.909 0.00 0.00 0.00 3.07
3405 4044 5.750352 AAACCAAAATGATTCCTGCTGAT 57.250 34.783 0.00 0.00 0.00 2.90
3406 4045 5.540911 GAAAACCAAAATGATTCCTGCTGA 58.459 37.500 0.00 0.00 0.00 4.26
3407 4046 4.386652 CGAAAACCAAAATGATTCCTGCTG 59.613 41.667 0.00 0.00 0.00 4.41
3408 4047 4.559153 CGAAAACCAAAATGATTCCTGCT 58.441 39.130 0.00 0.00 0.00 4.24
3409 4048 3.679502 CCGAAAACCAAAATGATTCCTGC 59.320 43.478 0.00 0.00 0.00 4.85
3410 4049 3.679502 GCCGAAAACCAAAATGATTCCTG 59.320 43.478 0.00 0.00 0.00 3.86
3411 4050 3.578282 AGCCGAAAACCAAAATGATTCCT 59.422 39.130 0.00 0.00 0.00 3.36
3412 4051 3.925379 AGCCGAAAACCAAAATGATTCC 58.075 40.909 0.00 0.00 0.00 3.01
3413 4052 7.414814 TTTAAGCCGAAAACCAAAATGATTC 57.585 32.000 0.00 0.00 0.00 2.52
3414 4053 7.793927 TTTTAAGCCGAAAACCAAAATGATT 57.206 28.000 0.00 0.00 0.00 2.57
3415 4054 7.793927 TTTTTAAGCCGAAAACCAAAATGAT 57.206 28.000 0.00 0.00 0.00 2.45
3416 4055 7.281100 ACATTTTTAAGCCGAAAACCAAAATGA 59.719 29.630 17.12 0.00 40.31 2.57
3417 4056 7.413644 ACATTTTTAAGCCGAAAACCAAAATG 58.586 30.769 11.17 11.17 42.15 2.32
3418 4057 7.561021 ACATTTTTAAGCCGAAAACCAAAAT 57.439 28.000 0.00 0.00 0.00 1.82
3419 4058 6.986904 ACATTTTTAAGCCGAAAACCAAAA 57.013 29.167 0.00 0.00 0.00 2.44
3420 4059 6.986904 AACATTTTTAAGCCGAAAACCAAA 57.013 29.167 0.00 0.00 0.00 3.28
3421 4060 6.986904 AAACATTTTTAAGCCGAAAACCAA 57.013 29.167 0.00 0.00 0.00 3.67
3422 4061 6.986904 AAAACATTTTTAAGCCGAAAACCA 57.013 29.167 0.00 0.00 0.00 3.67
3423 4062 8.984764 AGATAAAACATTTTTAAGCCGAAAACC 58.015 29.630 0.00 0.00 0.00 3.27
3437 4076 9.995003 TGGCATGAAAAGTAAGATAAAACATTT 57.005 25.926 0.00 0.00 0.00 2.32
3438 4077 9.643693 CTGGCATGAAAAGTAAGATAAAACATT 57.356 29.630 0.00 0.00 0.00 2.71
3439 4078 8.253113 CCTGGCATGAAAAGTAAGATAAAACAT 58.747 33.333 0.00 0.00 0.00 2.71
3440 4079 7.232534 ACCTGGCATGAAAAGTAAGATAAAACA 59.767 33.333 0.00 0.00 0.00 2.83
3441 4080 7.542130 CACCTGGCATGAAAAGTAAGATAAAAC 59.458 37.037 0.00 0.00 0.00 2.43
3442 4081 7.601856 CACCTGGCATGAAAAGTAAGATAAAA 58.398 34.615 0.00 0.00 0.00 1.52
3443 4082 6.350110 GCACCTGGCATGAAAAGTAAGATAAA 60.350 38.462 0.00 0.00 43.97 1.40
3444 4083 5.125417 GCACCTGGCATGAAAAGTAAGATAA 59.875 40.000 0.00 0.00 43.97 1.75
3445 4084 4.640201 GCACCTGGCATGAAAAGTAAGATA 59.360 41.667 0.00 0.00 43.97 1.98
3446 4085 3.445096 GCACCTGGCATGAAAAGTAAGAT 59.555 43.478 0.00 0.00 43.97 2.40
3447 4086 2.819608 GCACCTGGCATGAAAAGTAAGA 59.180 45.455 0.00 0.00 43.97 2.10
3448 4087 3.221964 GCACCTGGCATGAAAAGTAAG 57.778 47.619 0.00 0.00 43.97 2.34
3488 4127 1.371558 GTCAGTTGGAAGCGGAGGT 59.628 57.895 0.00 0.00 44.60 3.85
3489 4128 0.671781 CTGTCAGTTGGAAGCGGAGG 60.672 60.000 0.00 0.00 0.00 4.30
3491 4130 1.371183 CCTGTCAGTTGGAAGCGGA 59.629 57.895 0.00 0.00 0.00 5.54
3492 4131 2.328099 GCCTGTCAGTTGGAAGCGG 61.328 63.158 0.00 0.00 0.00 5.52
3493 4132 2.328099 GGCCTGTCAGTTGGAAGCG 61.328 63.158 0.00 0.00 0.00 4.68
3494 4133 1.228245 TGGCCTGTCAGTTGGAAGC 60.228 57.895 3.32 0.00 0.00 3.86
3495 4134 0.607489 CCTGGCCTGTCAGTTGGAAG 60.607 60.000 3.32 0.00 33.14 3.46
3496 4135 1.352622 ACCTGGCCTGTCAGTTGGAA 61.353 55.000 3.32 0.00 33.14 3.53
3497 4136 1.352622 AACCTGGCCTGTCAGTTGGA 61.353 55.000 3.32 0.00 33.14 3.53
3498 4137 0.468029 AAACCTGGCCTGTCAGTTGG 60.468 55.000 3.32 0.00 33.14 3.77
3499 4138 0.670162 CAAACCTGGCCTGTCAGTTG 59.330 55.000 3.32 1.06 33.14 3.16
3500 4139 0.258774 ACAAACCTGGCCTGTCAGTT 59.741 50.000 3.32 0.14 33.14 3.16
3501 4140 0.466189 CACAAACCTGGCCTGTCAGT 60.466 55.000 3.32 1.04 33.14 3.41
3502 4141 1.799258 GCACAAACCTGGCCTGTCAG 61.799 60.000 3.32 0.00 34.70 3.51
3503 4142 1.827789 GCACAAACCTGGCCTGTCA 60.828 57.895 3.32 0.00 0.00 3.58
3504 4143 1.827789 TGCACAAACCTGGCCTGTC 60.828 57.895 3.32 0.00 0.00 3.51
3505 4144 2.127232 GTGCACAAACCTGGCCTGT 61.127 57.895 13.17 0.00 0.00 4.00
3506 4145 1.394266 AAGTGCACAAACCTGGCCTG 61.394 55.000 21.04 2.54 0.00 4.85
3507 4146 0.687427 AAAGTGCACAAACCTGGCCT 60.687 50.000 21.04 0.00 0.00 5.19
3508 4147 1.000274 CTAAAGTGCACAAACCTGGCC 60.000 52.381 21.04 0.00 0.00 5.36
3509 4148 1.602920 GCTAAAGTGCACAAACCTGGC 60.603 52.381 21.04 9.68 0.00 4.85
3510 4149 1.956477 AGCTAAAGTGCACAAACCTGG 59.044 47.619 21.04 3.38 34.99 4.45
3511 4150 3.715628 AAGCTAAAGTGCACAAACCTG 57.284 42.857 21.04 4.99 34.99 4.00
3512 4151 4.261031 CGTTAAGCTAAAGTGCACAAACCT 60.261 41.667 21.04 5.44 34.99 3.50
3513 4152 3.972502 CGTTAAGCTAAAGTGCACAAACC 59.027 43.478 21.04 3.00 34.99 3.27
3514 4153 3.972502 CCGTTAAGCTAAAGTGCACAAAC 59.027 43.478 21.04 8.55 34.99 2.93
3515 4154 3.628487 ACCGTTAAGCTAAAGTGCACAAA 59.372 39.130 21.04 2.40 34.99 2.83
3516 4155 3.207778 ACCGTTAAGCTAAAGTGCACAA 58.792 40.909 21.04 2.80 34.99 3.33
3517 4156 2.803956 GACCGTTAAGCTAAAGTGCACA 59.196 45.455 21.04 0.00 34.99 4.57
3518 4157 3.064931 AGACCGTTAAGCTAAAGTGCAC 58.935 45.455 9.40 9.40 34.99 4.57
3519 4158 3.323243 GAGACCGTTAAGCTAAAGTGCA 58.677 45.455 0.00 0.00 34.99 4.57
3522 4161 3.577415 AGTGGAGACCGTTAAGCTAAAGT 59.423 43.478 0.00 0.00 0.00 2.66
3526 4165 3.159472 TCAAGTGGAGACCGTTAAGCTA 58.841 45.455 0.00 0.00 0.00 3.32
3530 4169 2.038033 CCCTTCAAGTGGAGACCGTTAA 59.962 50.000 0.00 0.00 0.00 2.01
3536 4175 2.951229 TTTCCCCTTCAAGTGGAGAC 57.049 50.000 0.00 0.00 0.00 3.36
3574 4213 1.146774 TCCTTTTGGGAGTGGAATGCA 59.853 47.619 0.00 0.00 39.58 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.