Multiple sequence alignment - TraesCS3D01G364000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G364000 chr3D 100.000 4905 0 0 1 4905 477894788 477899692 0.000000e+00 9058.0
1 TraesCS3D01G364000 chr3D 88.684 1299 98 19 2280 3556 253386200 253384929 0.000000e+00 1539.0
2 TraesCS3D01G364000 chr3D 82.776 807 94 23 726 1524 253392529 253391760 0.000000e+00 678.0
3 TraesCS3D01G364000 chr3D 89.935 308 29 2 1968 2275 253386595 253386290 3.560000e-106 396.0
4 TraesCS3D01G364000 chr3D 82.803 471 49 15 3558 4022 253384889 253384445 4.600000e-105 392.0
5 TraesCS3D01G364000 chr3D 87.195 328 34 4 1520 1844 253386968 253386646 2.790000e-97 366.0
6 TraesCS3D01G364000 chr3D 90.533 169 14 2 4091 4258 110409442 110409609 6.390000e-54 222.0
7 TraesCS3D01G364000 chr3A 94.803 4118 150 37 2 4089 621229393 621233476 0.000000e+00 6360.0
8 TraesCS3D01G364000 chr3A 86.505 1030 95 20 2551 3556 330694832 330695841 0.000000e+00 1092.0
9 TraesCS3D01G364000 chr3A 91.061 537 44 2 1968 2502 330694307 330694841 0.000000e+00 723.0
10 TraesCS3D01G364000 chr3A 85.616 292 34 6 1553 1844 330693973 330694256 2.870000e-77 300.0
11 TraesCS3D01G364000 chr3A 84.192 291 24 9 3558 3847 330695881 330696150 3.770000e-66 263.0
12 TraesCS3D01G364000 chr3A 80.000 105 19 2 4397 4499 489053774 489053670 5.260000e-10 76.8
13 TraesCS3D01G364000 chr3B 93.267 4129 155 50 1 4061 637075398 637079471 0.000000e+00 5971.0
14 TraesCS3D01G364000 chr3B 87.559 1471 132 22 2111 3556 304240870 304242314 0.000000e+00 1655.0
15 TraesCS3D01G364000 chr3B 82.879 257 22 7 3558 3813 304242354 304242589 1.380000e-50 211.0
16 TraesCS3D01G364000 chr2D 77.083 528 94 14 4397 4905 522511541 522512060 3.740000e-71 279.0
17 TraesCS3D01G364000 chr6B 83.557 298 32 10 8 299 277159517 277159231 3.770000e-66 263.0
18 TraesCS3D01G364000 chr6A 91.463 164 13 1 4096 4258 5939241 5939078 1.780000e-54 224.0
19 TraesCS3D01G364000 chr6D 90.533 169 14 2 4091 4258 176827714 176827547 6.390000e-54 222.0
20 TraesCS3D01G364000 chr6D 81.863 204 21 8 57 255 153190772 153190580 1.830000e-34 158.0
21 TraesCS3D01G364000 chr6D 83.636 110 18 0 4796 4905 285018574 285018465 2.420000e-18 104.0
22 TraesCS3D01G364000 chr6D 86.047 86 7 3 214 299 153190461 153190381 2.430000e-13 87.9
23 TraesCS3D01G364000 chr6D 78.261 115 20 4 4400 4514 262193148 262193039 8.810000e-08 69.4
24 TraesCS3D01G364000 chr7B 89.349 169 16 2 4091 4258 453050403 453050570 1.380000e-50 211.0
25 TraesCS3D01G364000 chr7B 73.333 375 81 14 4528 4894 39175131 39174768 2.400000e-23 121.0
26 TraesCS3D01G364000 chr5A 89.349 169 16 2 4091 4258 442299884 442299717 1.380000e-50 211.0
27 TraesCS3D01G364000 chr5A 88.571 175 16 4 4093 4266 567110969 567110798 4.980000e-50 209.0
28 TraesCS3D01G364000 chr4D 89.349 169 16 2 4091 4258 30366662 30366829 1.380000e-50 211.0
29 TraesCS3D01G364000 chr4D 75.083 301 53 13 4597 4895 98089718 98089998 2.400000e-23 121.0
30 TraesCS3D01G364000 chr4B 89.349 169 16 2 4091 4258 535736144 535735977 1.380000e-50 211.0
31 TraesCS3D01G364000 chr1D 89.349 169 16 2 4091 4258 63647519 63647686 1.380000e-50 211.0
32 TraesCS3D01G364000 chr5D 86.364 154 21 0 4752 4905 328611590 328611437 8.440000e-38 169.0
33 TraesCS3D01G364000 chr5B 81.553 206 36 2 4690 4894 571468900 571469104 8.440000e-38 169.0
34 TraesCS3D01G364000 chr7D 76.720 189 41 2 4717 4905 88882334 88882149 8.690000e-18 102.0
35 TraesCS3D01G364000 chr7D 96.970 33 1 0 4366 4398 305119543 305119575 6.860000e-04 56.5
36 TraesCS3D01G364000 chr7A 72.180 399 76 18 4505 4896 353908174 353908544 6.760000e-14 89.8
37 TraesCS3D01G364000 chr7A 96.970 33 1 0 4366 4398 353907986 353908018 6.860000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G364000 chr3D 477894788 477899692 4904 False 9058.00 9058 100.00000 1 4905 1 chr3D.!!$F2 4904
1 TraesCS3D01G364000 chr3D 253391760 253392529 769 True 678.00 678 82.77600 726 1524 1 chr3D.!!$R1 798
2 TraesCS3D01G364000 chr3D 253384445 253386968 2523 True 673.25 1539 87.15425 1520 4022 4 chr3D.!!$R2 2502
3 TraesCS3D01G364000 chr3A 621229393 621233476 4083 False 6360.00 6360 94.80300 2 4089 1 chr3A.!!$F1 4087
4 TraesCS3D01G364000 chr3A 330693973 330696150 2177 False 594.50 1092 86.84350 1553 3847 4 chr3A.!!$F2 2294
5 TraesCS3D01G364000 chr3B 637075398 637079471 4073 False 5971.00 5971 93.26700 1 4061 1 chr3B.!!$F1 4060
6 TraesCS3D01G364000 chr3B 304240870 304242589 1719 False 933.00 1655 85.21900 2111 3813 2 chr3B.!!$F2 1702
7 TraesCS3D01G364000 chr2D 522511541 522512060 519 False 279.00 279 77.08300 4397 4905 1 chr2D.!!$F1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 317 2.026449 CAGCAAGGAGGAGGAGATGTTT 60.026 50.0 0.0 0.00 0.00 2.83 F
1279 1349 0.397941 TGGTTCAGAGGACTTGCTGG 59.602 55.0 0.0 0.00 33.05 4.85 F
1420 1490 0.030504 TGCGTGGAACATTGTTGCTG 59.969 50.0 19.8 13.82 44.52 4.41 F
2729 2906 0.107643 GCTATGCTTCTGGGGAGGAC 59.892 60.0 0.0 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1396 1466 0.823356 ACAATGTTCCACGCAAGCCT 60.823 50.000 0.0 0.0 45.62 4.58 R
2729 2906 3.243975 ACTCGTAAACAAGGTACAGGTGG 60.244 47.826 0.0 0.0 0.00 4.61 R
2936 3113 3.731136 TGCGTTCTTGCAGTCCAC 58.269 55.556 0.0 0.0 40.62 4.02 R
4627 4883 0.039035 TTGAATAGCGGGGGCAAAGT 59.961 50.000 0.0 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
289 317 2.026449 CAGCAAGGAGGAGGAGATGTTT 60.026 50.000 0.00 0.00 0.00 2.83
388 416 4.141892 TGTCGTAGTTTTCTTTGGTGAGGA 60.142 41.667 0.00 0.00 0.00 3.71
657 685 3.934579 CCAGCAAAATAGGCCAAATGTTC 59.065 43.478 5.01 0.00 0.00 3.18
1017 1087 1.108776 CCATGGCCAGACATTCCTTG 58.891 55.000 13.05 0.02 0.00 3.61
1279 1349 0.397941 TGGTTCAGAGGACTTGCTGG 59.602 55.000 0.00 0.00 33.05 4.85
1343 1413 2.748605 CGGTCTCTTCCATGATACTGC 58.251 52.381 0.00 0.00 0.00 4.40
1353 1423 5.372343 TCCATGATACTGCATACAAGGTT 57.628 39.130 0.00 0.00 0.00 3.50
1361 1431 3.055094 ACTGCATACAAGGTTAGTCCAGG 60.055 47.826 0.00 0.00 39.02 4.45
1396 1466 4.242475 CAGCATCAACGGTAACTTCAGTA 58.758 43.478 0.00 0.00 0.00 2.74
1414 1484 1.135689 GTAGGCTTGCGTGGAACATTG 60.136 52.381 0.00 0.00 44.52 2.82
1420 1490 0.030504 TGCGTGGAACATTGTTGCTG 59.969 50.000 19.80 13.82 44.52 4.41
1446 1516 4.792704 GCAAACAAGACAATCACGGTTCAT 60.793 41.667 0.00 0.00 0.00 2.57
1452 1522 5.661056 AGACAATCACGGTTCATCTTCTA 57.339 39.130 0.00 0.00 0.00 2.10
1458 1528 2.609459 CACGGTTCATCTTCTATGTGGC 59.391 50.000 0.00 0.00 0.00 5.01
1618 1688 4.589908 TCTTAAGGAAGGTTGGATCTTGC 58.410 43.478 1.85 0.00 33.09 4.01
1839 1913 7.174946 TGTTTCCATCTAATGTTGTTTCTCTCC 59.825 37.037 0.00 0.00 0.00 3.71
1851 1925 4.974399 TGTTTCTCTCCTCCTCTTTTTCC 58.026 43.478 0.00 0.00 0.00 3.13
1858 1932 5.870706 TCTCCTCCTCTTTTTCCTTTTCTC 58.129 41.667 0.00 0.00 0.00 2.87
1994 2068 5.122554 TGACTGCTCAACTTTTTCGTGTTTA 59.877 36.000 0.00 0.00 0.00 2.01
2433 2592 4.381411 GCATGGTCTACCTAGGTTTCATC 58.619 47.826 22.11 5.23 36.82 2.92
2507 2666 5.052481 TCGAAGCAACATCAGATCCTTATG 58.948 41.667 0.00 0.00 0.00 1.90
2521 2680 4.715534 TCCTTATGTTTGACCTTGGTCA 57.284 40.909 17.57 17.57 0.00 4.02
2634 2793 6.441093 TGTGGTACGTACTTAGATTGTAGG 57.559 41.667 24.07 0.00 33.57 3.18
2729 2906 0.107643 GCTATGCTTCTGGGGAGGAC 59.892 60.000 0.00 0.00 0.00 3.85
2855 3032 3.865011 TGTTTGCTTGCTTCTGTCAAA 57.135 38.095 0.00 0.00 0.00 2.69
2951 3128 0.318699 TCTCGTGGACTGCAAGAACG 60.319 55.000 4.93 4.93 39.08 3.95
3109 3289 7.582667 AGCCACAAAGTTTAAAGTGTTATCT 57.417 32.000 0.00 0.00 0.00 1.98
3262 3443 7.295340 ACCTTCCACCAGAGTTAGTTTTTAAT 58.705 34.615 0.00 0.00 0.00 1.40
3268 3449 8.417884 CCACCAGAGTTAGTTTTTAATTTGGAA 58.582 33.333 0.00 0.00 0.00 3.53
3411 3592 1.736681 GTTCTTGCAGAGCTGATCACC 59.263 52.381 0.85 0.00 0.00 4.02
3485 3666 7.385205 GTCACTTATCTCAACTGTAAGAGCAAA 59.615 37.037 5.56 2.79 37.43 3.68
3486 3667 8.097038 TCACTTATCTCAACTGTAAGAGCAAAT 58.903 33.333 5.56 0.00 37.43 2.32
3487 3668 8.173775 CACTTATCTCAACTGTAAGAGCAAATG 58.826 37.037 5.56 0.88 37.43 2.32
3488 3669 8.097038 ACTTATCTCAACTGTAAGAGCAAATGA 58.903 33.333 5.56 0.00 37.43 2.57
3489 3670 6.734104 ATCTCAACTGTAAGAGCAAATGAC 57.266 37.500 5.56 0.00 37.43 3.06
3496 3677 4.808558 TGTAAGAGCAAATGACAAATGCC 58.191 39.130 11.07 4.84 40.93 4.40
3500 3681 2.991190 GAGCAAATGACAAATGCCTGTG 59.009 45.455 11.07 0.00 40.93 3.66
3503 3684 3.184986 GCAAATGACAAATGCCTGTGAAC 59.815 43.478 4.86 0.00 34.03 3.18
3506 3687 1.601903 TGACAAATGCCTGTGAACGTC 59.398 47.619 0.00 0.00 0.00 4.34
3507 3688 1.601903 GACAAATGCCTGTGAACGTCA 59.398 47.619 0.00 0.00 0.00 4.35
3530 3711 9.548208 GTCAGAGCTGTTTCAATTTTTATAGTC 57.452 33.333 0.00 0.00 0.00 2.59
3556 3741 6.347270 TCTGTTTTTGACAATGTTTGCATG 57.653 33.333 0.00 0.00 37.93 4.06
3572 3795 2.290450 TGCATGACAGATGAGGAAAGCA 60.290 45.455 0.00 0.00 0.00 3.91
3632 3855 5.098575 TCATAGATCCCTCCTTGAAGGAT 57.901 43.478 15.35 0.00 44.81 3.24
3710 3933 4.571984 TGACACAGTGAAACATCTCAGTTG 59.428 41.667 7.81 0.00 41.43 3.16
3778 4002 0.460987 GGTGCTTGAGTGAGGATCCG 60.461 60.000 5.98 0.00 0.00 4.18
3910 4136 8.253113 GGTGTTTTCAATGGTAGATGATCAAAT 58.747 33.333 0.00 0.00 0.00 2.32
3952 4183 4.243270 ACAGTAGATACGAAAAGTGTGCC 58.757 43.478 0.00 0.00 0.00 5.01
3972 4203 3.727726 CCCCTGTTGATTTTTGTTGGAC 58.272 45.455 0.00 0.00 0.00 4.02
4035 4276 1.135859 GCGACCATGTCTTTGCAAGAG 60.136 52.381 0.00 0.73 38.41 2.85
4039 4280 4.498009 CGACCATGTCTTTGCAAGAGTTTT 60.498 41.667 0.00 0.00 38.41 2.43
4051 4292 4.273480 TGCAAGAGTTTTACTGAGTGAAGC 59.727 41.667 0.00 0.00 0.00 3.86
4071 4312 2.812591 GCCAGTCATATCCATCTTGCTG 59.187 50.000 0.00 0.00 0.00 4.41
4089 4330 4.525996 TGCTGGCAGAATTGTATGTACAT 58.474 39.130 20.86 13.93 35.89 2.29
4090 4331 5.679601 TGCTGGCAGAATTGTATGTACATA 58.320 37.500 20.86 11.62 35.89 2.29
4091 4332 5.527214 TGCTGGCAGAATTGTATGTACATAC 59.473 40.000 30.81 30.81 42.95 2.39
4104 4345 8.349568 TGTATGTACATACATGATACTCCCTC 57.650 38.462 34.48 12.34 46.11 4.30
4105 4346 6.859112 ATGTACATACATGATACTCCCTCC 57.141 41.667 6.56 0.00 44.66 4.30
4106 4347 5.711698 TGTACATACATGATACTCCCTCCA 58.288 41.667 0.00 0.00 0.00 3.86
4107 4348 6.322931 TGTACATACATGATACTCCCTCCAT 58.677 40.000 0.00 0.00 0.00 3.41
4108 4349 6.787458 TGTACATACATGATACTCCCTCCATT 59.213 38.462 0.00 0.00 0.00 3.16
4109 4350 6.365970 ACATACATGATACTCCCTCCATTC 57.634 41.667 0.00 0.00 0.00 2.67
4110 4351 5.249393 ACATACATGATACTCCCTCCATTCC 59.751 44.000 0.00 0.00 0.00 3.01
4111 4352 3.946824 ACATGATACTCCCTCCATTCCT 58.053 45.455 0.00 0.00 0.00 3.36
4112 4353 5.093236 ACATGATACTCCCTCCATTCCTA 57.907 43.478 0.00 0.00 0.00 2.94
4113 4354 5.476983 ACATGATACTCCCTCCATTCCTAA 58.523 41.667 0.00 0.00 0.00 2.69
4114 4355 5.911178 ACATGATACTCCCTCCATTCCTAAA 59.089 40.000 0.00 0.00 0.00 1.85
4115 4356 6.564152 ACATGATACTCCCTCCATTCCTAAAT 59.436 38.462 0.00 0.00 0.00 1.40
4116 4357 7.739444 ACATGATACTCCCTCCATTCCTAAATA 59.261 37.037 0.00 0.00 0.00 1.40
4117 4358 8.776119 CATGATACTCCCTCCATTCCTAAATAT 58.224 37.037 0.00 0.00 0.00 1.28
4119 4360 9.852784 TGATACTCCCTCCATTCCTAAATATAA 57.147 33.333 0.00 0.00 0.00 0.98
4121 4362 9.860393 ATACTCCCTCCATTCCTAAATATAAGT 57.140 33.333 0.00 0.00 0.00 2.24
4122 4363 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
4123 4364 7.237887 ACTCCCTCCATTCCTAAATATAAGTCC 59.762 40.741 0.00 0.00 0.00 3.85
4124 4365 7.321530 TCCCTCCATTCCTAAATATAAGTCCT 58.678 38.462 0.00 0.00 0.00 3.85
4125 4366 7.799583 TCCCTCCATTCCTAAATATAAGTCCTT 59.200 37.037 0.00 0.00 0.00 3.36
4126 4367 8.448816 CCCTCCATTCCTAAATATAAGTCCTTT 58.551 37.037 0.00 0.00 0.00 3.11
4127 4368 9.868160 CCTCCATTCCTAAATATAAGTCCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
4160 4401 9.847224 TGATTATAGAGACTATATACGGATGCA 57.153 33.333 0.00 0.00 0.00 3.96
4190 4431 9.160412 AGATGCCTTTTATAGTATAGGTTCACT 57.840 33.333 0.46 0.00 0.00 3.41
4191 4432 9.425577 GATGCCTTTTATAGTATAGGTTCACTC 57.574 37.037 0.46 0.00 0.00 3.51
4192 4433 8.313944 TGCCTTTTATAGTATAGGTTCACTCA 57.686 34.615 0.46 0.00 0.00 3.41
4193 4434 8.934697 TGCCTTTTATAGTATAGGTTCACTCAT 58.065 33.333 0.46 0.00 0.00 2.90
4194 4435 9.780186 GCCTTTTATAGTATAGGTTCACTCATT 57.220 33.333 0.46 0.00 0.00 2.57
4200 4441 8.894768 ATAGTATAGGTTCACTCATTTTGCTC 57.105 34.615 0.00 0.00 0.00 4.26
4201 4442 6.951971 AGTATAGGTTCACTCATTTTGCTCT 58.048 36.000 0.00 0.00 0.00 4.09
4202 4443 6.820656 AGTATAGGTTCACTCATTTTGCTCTG 59.179 38.462 0.00 0.00 0.00 3.35
4203 4444 3.825328 AGGTTCACTCATTTTGCTCTGT 58.175 40.909 0.00 0.00 0.00 3.41
4204 4445 4.973168 AGGTTCACTCATTTTGCTCTGTA 58.027 39.130 0.00 0.00 0.00 2.74
4205 4446 5.564550 AGGTTCACTCATTTTGCTCTGTAT 58.435 37.500 0.00 0.00 0.00 2.29
4206 4447 5.413833 AGGTTCACTCATTTTGCTCTGTATG 59.586 40.000 0.00 0.00 0.00 2.39
4207 4448 5.182001 GGTTCACTCATTTTGCTCTGTATGT 59.818 40.000 0.00 0.00 0.00 2.29
4208 4449 6.371548 GGTTCACTCATTTTGCTCTGTATGTA 59.628 38.462 0.00 0.00 0.00 2.29
4209 4450 7.413438 GGTTCACTCATTTTGCTCTGTATGTAG 60.413 40.741 0.00 0.00 0.00 2.74
4210 4451 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
4211 4452 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
4212 4453 6.815641 CACTCATTTTGCTCTGTATGTAGTCT 59.184 38.462 0.00 0.00 0.00 3.24
4213 4454 7.976175 CACTCATTTTGCTCTGTATGTAGTCTA 59.024 37.037 0.00 0.00 0.00 2.59
4214 4455 8.700051 ACTCATTTTGCTCTGTATGTAGTCTAT 58.300 33.333 0.00 0.00 0.00 1.98
4253 4494 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
4254 4495 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4255 4496 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4256 4497 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4257 4498 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
4258 4499 6.267242 ACTTATATTTAGGAACGGAGGGAGTC 59.733 42.308 0.00 0.00 0.00 3.36
4259 4500 2.314071 TTTAGGAACGGAGGGAGTCA 57.686 50.000 0.00 0.00 0.00 3.41
4260 4501 1.848652 TTAGGAACGGAGGGAGTCAG 58.151 55.000 0.00 0.00 0.00 3.51
4261 4502 0.702902 TAGGAACGGAGGGAGTCAGT 59.297 55.000 0.00 0.00 34.68 3.41
4262 4503 0.900647 AGGAACGGAGGGAGTCAGTG 60.901 60.000 0.00 0.00 33.34 3.66
4263 4504 1.186267 GGAACGGAGGGAGTCAGTGT 61.186 60.000 0.00 0.00 33.34 3.55
4264 4505 0.680061 GAACGGAGGGAGTCAGTGTT 59.320 55.000 0.00 0.00 33.34 3.32
4265 4506 0.393077 AACGGAGGGAGTCAGTGTTG 59.607 55.000 0.00 0.00 33.34 3.33
4266 4507 1.293498 CGGAGGGAGTCAGTGTTGG 59.707 63.158 0.00 0.00 0.00 3.77
4267 4508 1.185618 CGGAGGGAGTCAGTGTTGGA 61.186 60.000 0.00 0.00 0.00 3.53
4268 4509 0.610687 GGAGGGAGTCAGTGTTGGAG 59.389 60.000 0.00 0.00 0.00 3.86
4269 4510 0.610687 GAGGGAGTCAGTGTTGGAGG 59.389 60.000 0.00 0.00 0.00 4.30
4270 4511 0.838122 AGGGAGTCAGTGTTGGAGGG 60.838 60.000 0.00 0.00 0.00 4.30
4271 4512 0.836400 GGGAGTCAGTGTTGGAGGGA 60.836 60.000 0.00 0.00 0.00 4.20
4272 4513 0.610687 GGAGTCAGTGTTGGAGGGAG 59.389 60.000 0.00 0.00 0.00 4.30
4273 4514 1.343069 GAGTCAGTGTTGGAGGGAGT 58.657 55.000 0.00 0.00 0.00 3.85
4274 4515 2.526432 GAGTCAGTGTTGGAGGGAGTA 58.474 52.381 0.00 0.00 0.00 2.59
4275 4516 2.231721 GAGTCAGTGTTGGAGGGAGTAC 59.768 54.545 0.00 0.00 0.00 2.73
4276 4517 1.968493 GTCAGTGTTGGAGGGAGTACA 59.032 52.381 0.00 0.00 0.00 2.90
4277 4518 2.567615 GTCAGTGTTGGAGGGAGTACAT 59.432 50.000 0.00 0.00 0.00 2.29
4278 4519 2.567169 TCAGTGTTGGAGGGAGTACATG 59.433 50.000 0.00 0.00 0.00 3.21
4279 4520 1.279271 AGTGTTGGAGGGAGTACATGC 59.721 52.381 0.00 0.00 0.00 4.06
4280 4521 0.249120 TGTTGGAGGGAGTACATGCG 59.751 55.000 0.00 0.00 0.00 4.73
4281 4522 0.535335 GTTGGAGGGAGTACATGCGA 59.465 55.000 0.00 0.00 0.00 5.10
4282 4523 0.535335 TTGGAGGGAGTACATGCGAC 59.465 55.000 0.00 0.00 0.00 5.19
4283 4524 0.324368 TGGAGGGAGTACATGCGACT 60.324 55.000 0.57 0.57 0.00 4.18
4284 4525 0.824759 GGAGGGAGTACATGCGACTT 59.175 55.000 2.59 0.00 0.00 3.01
4285 4526 1.202428 GGAGGGAGTACATGCGACTTC 60.202 57.143 2.59 0.71 0.00 3.01
4286 4527 1.751924 GAGGGAGTACATGCGACTTCT 59.248 52.381 6.61 5.97 0.00 2.85
4287 4528 1.751924 AGGGAGTACATGCGACTTCTC 59.248 52.381 6.61 0.47 0.00 2.87
4288 4529 1.202428 GGGAGTACATGCGACTTCTCC 60.202 57.143 6.61 8.05 40.21 3.71
4289 4530 1.476891 GGAGTACATGCGACTTCTCCA 59.523 52.381 10.68 0.00 40.51 3.86
4290 4531 2.094182 GGAGTACATGCGACTTCTCCAA 60.094 50.000 10.68 0.00 40.51 3.53
4291 4532 3.585862 GAGTACATGCGACTTCTCCAAA 58.414 45.455 2.59 0.00 0.00 3.28
4292 4533 4.184629 GAGTACATGCGACTTCTCCAAAT 58.815 43.478 2.59 0.00 0.00 2.32
4293 4534 4.579869 AGTACATGCGACTTCTCCAAATT 58.420 39.130 0.00 0.00 0.00 1.82
4294 4535 5.003804 AGTACATGCGACTTCTCCAAATTT 58.996 37.500 0.00 0.00 0.00 1.82
4295 4536 6.170506 AGTACATGCGACTTCTCCAAATTTA 58.829 36.000 0.00 0.00 0.00 1.40
4296 4537 6.823689 AGTACATGCGACTTCTCCAAATTTAT 59.176 34.615 0.00 0.00 0.00 1.40
4297 4538 6.124088 ACATGCGACTTCTCCAAATTTATC 57.876 37.500 0.00 0.00 0.00 1.75
4298 4539 5.882557 ACATGCGACTTCTCCAAATTTATCT 59.117 36.000 0.00 0.00 0.00 1.98
4299 4540 5.801350 TGCGACTTCTCCAAATTTATCTG 57.199 39.130 0.00 0.00 0.00 2.90
4300 4541 4.094887 TGCGACTTCTCCAAATTTATCTGC 59.905 41.667 0.00 0.00 0.00 4.26
4301 4542 4.094887 GCGACTTCTCCAAATTTATCTGCA 59.905 41.667 0.00 0.00 0.00 4.41
4302 4543 5.391950 GCGACTTCTCCAAATTTATCTGCAA 60.392 40.000 0.00 0.00 0.00 4.08
4303 4544 6.024049 CGACTTCTCCAAATTTATCTGCAAC 58.976 40.000 0.00 0.00 0.00 4.17
4304 4545 6.348458 CGACTTCTCCAAATTTATCTGCAACA 60.348 38.462 0.00 0.00 0.00 3.33
4305 4546 7.288810 ACTTCTCCAAATTTATCTGCAACAA 57.711 32.000 0.00 0.00 0.00 2.83
4306 4547 7.899973 ACTTCTCCAAATTTATCTGCAACAAT 58.100 30.769 0.00 0.00 0.00 2.71
4307 4548 9.023962 ACTTCTCCAAATTTATCTGCAACAATA 57.976 29.630 0.00 0.00 0.00 1.90
4308 4549 9.859427 CTTCTCCAAATTTATCTGCAACAATAA 57.141 29.630 0.00 0.00 0.00 1.40
4309 4550 9.638239 TTCTCCAAATTTATCTGCAACAATAAC 57.362 29.630 0.00 0.00 0.00 1.89
4310 4551 9.023962 TCTCCAAATTTATCTGCAACAATAACT 57.976 29.630 0.00 0.00 0.00 2.24
4311 4552 9.643693 CTCCAAATTTATCTGCAACAATAACTT 57.356 29.630 0.00 0.00 0.00 2.66
4320 4561 7.692908 TCTGCAACAATAACTTAAACAAAGC 57.307 32.000 0.00 0.00 38.93 3.51
4321 4562 6.416455 TCTGCAACAATAACTTAAACAAAGCG 59.584 34.615 0.00 0.00 38.93 4.68
4322 4563 6.266323 TGCAACAATAACTTAAACAAAGCGA 58.734 32.000 0.00 0.00 38.93 4.93
4323 4564 6.416455 TGCAACAATAACTTAAACAAAGCGAG 59.584 34.615 0.00 0.00 38.93 5.03
4324 4565 6.635239 GCAACAATAACTTAAACAAAGCGAGA 59.365 34.615 0.00 0.00 38.93 4.04
4325 4566 7.166804 GCAACAATAACTTAAACAAAGCGAGAA 59.833 33.333 0.00 0.00 38.93 2.87
4326 4567 8.469125 CAACAATAACTTAAACAAAGCGAGAAC 58.531 33.333 0.00 0.00 38.93 3.01
4327 4568 7.136772 ACAATAACTTAAACAAAGCGAGAACC 58.863 34.615 0.00 0.00 38.93 3.62
4328 4569 3.872560 ACTTAAACAAAGCGAGAACCG 57.127 42.857 0.00 0.00 38.93 4.44
4329 4570 2.546789 ACTTAAACAAAGCGAGAACCGG 59.453 45.455 0.00 0.00 38.93 5.28
4330 4571 0.869730 TAAACAAAGCGAGAACCGGC 59.130 50.000 0.00 0.00 39.04 6.13
4331 4572 1.792118 AAACAAAGCGAGAACCGGCC 61.792 55.000 0.00 0.00 39.04 6.13
4332 4573 3.788766 CAAAGCGAGAACCGGCCG 61.789 66.667 21.04 21.04 39.04 6.13
4333 4574 4.309950 AAAGCGAGAACCGGCCGT 62.310 61.111 26.12 6.07 39.04 5.68
4334 4575 2.934570 AAAGCGAGAACCGGCCGTA 61.935 57.895 26.12 0.00 39.04 4.02
4335 4576 2.830704 AAAGCGAGAACCGGCCGTAG 62.831 60.000 26.12 12.62 39.04 3.51
4347 4588 3.164269 CCGTAGCCCAGGCATCCT 61.164 66.667 12.03 0.00 44.88 3.24
4348 4589 2.746375 CCGTAGCCCAGGCATCCTT 61.746 63.158 12.03 0.00 44.88 3.36
4349 4590 1.224592 CGTAGCCCAGGCATCCTTT 59.775 57.895 12.03 0.00 44.88 3.11
4350 4591 1.097547 CGTAGCCCAGGCATCCTTTG 61.098 60.000 12.03 0.00 44.88 2.77
4351 4592 0.255890 GTAGCCCAGGCATCCTTTGA 59.744 55.000 12.03 0.00 44.88 2.69
4352 4593 0.255890 TAGCCCAGGCATCCTTTGAC 59.744 55.000 12.03 0.00 44.88 3.18
4353 4594 2.054453 GCCCAGGCATCCTTTGACC 61.054 63.158 3.12 0.00 41.49 4.02
4354 4595 1.380380 CCCAGGCATCCTTTGACCC 60.380 63.158 0.00 0.00 31.49 4.46
4355 4596 1.693640 CCAGGCATCCTTTGACCCT 59.306 57.895 0.00 0.00 31.49 4.34
4356 4597 0.918983 CCAGGCATCCTTTGACCCTA 59.081 55.000 0.00 0.00 31.49 3.53
4357 4598 1.408822 CCAGGCATCCTTTGACCCTAC 60.409 57.143 0.00 0.00 31.49 3.18
4358 4599 0.919710 AGGCATCCTTTGACCCTACC 59.080 55.000 0.00 0.00 31.49 3.18
4359 4600 0.463833 GGCATCCTTTGACCCTACCG 60.464 60.000 0.00 0.00 0.00 4.02
4360 4601 0.539986 GCATCCTTTGACCCTACCGA 59.460 55.000 0.00 0.00 0.00 4.69
4361 4602 1.742750 GCATCCTTTGACCCTACCGAC 60.743 57.143 0.00 0.00 0.00 4.79
4362 4603 1.553248 CATCCTTTGACCCTACCGACA 59.447 52.381 0.00 0.00 0.00 4.35
4363 4604 1.946984 TCCTTTGACCCTACCGACAT 58.053 50.000 0.00 0.00 0.00 3.06
4364 4605 1.829222 TCCTTTGACCCTACCGACATC 59.171 52.381 0.00 0.00 0.00 3.06
4365 4606 1.470979 CCTTTGACCCTACCGACATCG 60.471 57.143 0.00 0.00 39.44 3.84
4366 4607 1.203994 CTTTGACCCTACCGACATCGT 59.796 52.381 0.00 0.00 37.74 3.73
4367 4608 0.813184 TTGACCCTACCGACATCGTC 59.187 55.000 0.00 0.00 37.74 4.20
4368 4609 0.322726 TGACCCTACCGACATCGTCA 60.323 55.000 0.00 0.00 37.74 4.35
4369 4610 0.813184 GACCCTACCGACATCGTCAA 59.187 55.000 0.00 0.00 37.74 3.18
4370 4611 1.407979 GACCCTACCGACATCGTCAAT 59.592 52.381 0.00 0.00 37.74 2.57
4371 4612 1.136305 ACCCTACCGACATCGTCAATG 59.864 52.381 0.00 0.00 41.48 2.82
4372 4613 1.538204 CCCTACCGACATCGTCAATGG 60.538 57.143 0.00 0.00 39.90 3.16
4373 4614 1.209128 CTACCGACATCGTCAATGGC 58.791 55.000 0.00 0.00 40.35 4.40
4376 4617 4.513519 GACATCGTCAATGGCGGA 57.486 55.556 7.59 0.00 39.90 5.54
4377 4618 2.006772 GACATCGTCAATGGCGGAC 58.993 57.895 7.59 0.00 39.90 4.79
4378 4619 0.739462 GACATCGTCAATGGCGGACA 60.739 55.000 7.59 0.00 39.90 4.02
4379 4620 1.019278 ACATCGTCAATGGCGGACAC 61.019 55.000 7.59 0.00 39.90 3.67
4380 4621 1.449601 ATCGTCAATGGCGGACACC 60.450 57.895 7.59 0.00 34.97 4.16
4381 4622 2.178876 ATCGTCAATGGCGGACACCA 62.179 55.000 7.59 0.00 45.82 4.17
4393 4634 3.606886 GACACCATGTCCGACAAGT 57.393 52.632 5.07 3.57 41.37 3.16
4394 4635 1.148310 GACACCATGTCCGACAAGTG 58.852 55.000 23.59 23.59 41.37 3.16
4395 4636 0.468226 ACACCATGTCCGACAAGTGT 59.532 50.000 24.54 24.54 41.68 3.55
4424 4665 5.741510 TGTTTACTTTGAAGCAAACACGATG 59.258 36.000 14.98 0.00 43.61 3.84
4425 4666 5.743026 TTACTTTGAAGCAAACACGATGA 57.257 34.783 0.00 0.00 0.00 2.92
4426 4667 4.630894 ACTTTGAAGCAAACACGATGAA 57.369 36.364 0.00 0.00 0.00 2.57
4428 4669 5.215160 ACTTTGAAGCAAACACGATGAATC 58.785 37.500 0.00 0.00 0.00 2.52
4429 4670 4.827304 TTGAAGCAAACACGATGAATCA 57.173 36.364 0.00 0.00 0.00 2.57
4431 4672 3.189080 TGAAGCAAACACGATGAATCAGG 59.811 43.478 0.00 0.00 0.00 3.86
4432 4673 1.470098 AGCAAACACGATGAATCAGGC 59.530 47.619 0.00 0.00 0.00 4.85
4440 4682 1.688735 CGATGAATCAGGCCAGGAGTA 59.311 52.381 5.01 0.00 0.00 2.59
4457 4699 5.354513 CAGGAGTACTTCTATGTCGAGTTCA 59.645 44.000 2.48 0.00 0.00 3.18
4460 4702 6.038382 GGAGTACTTCTATGTCGAGTTCATGA 59.962 42.308 0.00 0.00 0.00 3.07
4467 4709 7.936950 TCTATGTCGAGTTCATGAATTCATC 57.063 36.000 25.18 18.24 33.61 2.92
4470 4712 6.413018 TGTCGAGTTCATGAATTCATCTTG 57.587 37.500 25.18 15.22 33.61 3.02
4475 4717 5.491070 AGTTCATGAATTCATCTTGGTCGA 58.509 37.500 18.16 7.99 34.72 4.20
4476 4718 5.939883 AGTTCATGAATTCATCTTGGTCGAA 59.060 36.000 18.16 13.20 34.72 3.71
4477 4719 5.801350 TCATGAATTCATCTTGGTCGAAC 57.199 39.130 18.16 0.00 34.72 3.95
4482 4724 1.541379 TCATCTTGGTCGAACGAGGA 58.459 50.000 17.79 5.25 0.00 3.71
4483 4725 2.100197 TCATCTTGGTCGAACGAGGAT 58.900 47.619 17.79 7.28 0.00 3.24
4484 4726 2.159240 TCATCTTGGTCGAACGAGGATG 60.159 50.000 17.79 17.91 0.00 3.51
4485 4727 1.541379 TCTTGGTCGAACGAGGATGA 58.459 50.000 17.79 0.00 0.00 2.92
4488 4730 1.541379 TGGTCGAACGAGGATGAAGA 58.459 50.000 0.00 0.00 0.00 2.87
4501 4757 5.435291 GAGGATGAAGATGATGTTGAAGGT 58.565 41.667 0.00 0.00 0.00 3.50
4507 4763 6.479006 TGAAGATGATGTTGAAGGTGATTCT 58.521 36.000 0.00 0.00 38.83 2.40
4511 4767 6.944290 AGATGATGTTGAAGGTGATTCTTGAA 59.056 34.615 0.00 0.00 38.83 2.69
4514 4770 6.944290 TGATGTTGAAGGTGATTCTTGAAGAT 59.056 34.615 0.00 0.00 38.83 2.40
4544 4800 1.740025 GCAGAAGAGCATGGTACCAAC 59.260 52.381 20.76 14.42 0.00 3.77
4550 4806 4.207891 AGAGCATGGTACCAACTACAAG 57.792 45.455 20.76 4.34 0.00 3.16
4568 4824 4.149598 ACAAGGGTTCAATAAAGGGACAC 58.850 43.478 0.00 0.00 0.00 3.67
4570 4826 2.089201 GGGTTCAATAAAGGGACACCG 58.911 52.381 0.00 0.00 43.47 4.94
4588 4844 2.254459 CCGAGTGTTGAATCGACAGAG 58.746 52.381 3.08 0.00 41.40 3.35
4590 4846 2.095212 CGAGTGTTGAATCGACAGAGGA 60.095 50.000 3.08 0.00 41.40 3.71
4591 4847 3.246619 GAGTGTTGAATCGACAGAGGAC 58.753 50.000 3.08 0.00 0.00 3.85
4592 4848 2.628178 AGTGTTGAATCGACAGAGGACA 59.372 45.455 3.08 0.00 0.00 4.02
4593 4849 3.259374 AGTGTTGAATCGACAGAGGACAT 59.741 43.478 3.08 0.00 0.00 3.06
4594 4850 3.369147 GTGTTGAATCGACAGAGGACATG 59.631 47.826 3.08 0.00 0.00 3.21
4595 4851 3.006859 TGTTGAATCGACAGAGGACATGT 59.993 43.478 0.00 0.00 0.00 3.21
4596 4852 3.236632 TGAATCGACAGAGGACATGTG 57.763 47.619 1.15 0.00 0.00 3.21
4609 4865 3.225104 GGACATGTGGCCATATGATGTT 58.775 45.455 39.57 22.89 44.76 2.71
4610 4866 3.005050 GGACATGTGGCCATATGATGTTG 59.995 47.826 39.57 20.61 44.76 3.33
4618 4874 2.475111 GCCATATGATGTTGTACGACGG 59.525 50.000 3.65 3.13 0.00 4.79
4620 4876 1.830086 TATGATGTTGTACGACGGCG 58.170 50.000 10.39 10.39 44.79 6.46
4621 4877 0.171679 ATGATGTTGTACGACGGCGA 59.828 50.000 22.49 0.00 41.64 5.54
4643 4899 0.465642 GCTACTTTGCCCCCGCTATT 60.466 55.000 0.00 0.00 35.36 1.73
4644 4900 1.594331 CTACTTTGCCCCCGCTATTC 58.406 55.000 0.00 0.00 35.36 1.75
4645 4901 0.913205 TACTTTGCCCCCGCTATTCA 59.087 50.000 0.00 0.00 35.36 2.57
4657 4913 4.204012 CCCGCTATTCAAACCCTATTTCA 58.796 43.478 0.00 0.00 0.00 2.69
4658 4914 4.642885 CCCGCTATTCAAACCCTATTTCAA 59.357 41.667 0.00 0.00 0.00 2.69
4661 4917 5.578776 GCTATTCAAACCCTATTTCAACCG 58.421 41.667 0.00 0.00 0.00 4.44
4662 4918 3.926821 TTCAAACCCTATTTCAACCGC 57.073 42.857 0.00 0.00 0.00 5.68
4664 4920 1.889829 CAAACCCTATTTCAACCGCCA 59.110 47.619 0.00 0.00 0.00 5.69
4669 4925 3.194755 ACCCTATTTCAACCGCCAATTTC 59.805 43.478 0.00 0.00 0.00 2.17
4670 4926 3.194542 CCCTATTTCAACCGCCAATTTCA 59.805 43.478 0.00 0.00 0.00 2.69
4679 4935 0.523968 CGCCAATTTCAGATGCGGTG 60.524 55.000 0.00 0.00 41.42 4.94
4687 4943 0.321346 TCAGATGCGGTGACATGTGT 59.679 50.000 1.15 0.00 40.99 3.72
4688 4944 0.723414 CAGATGCGGTGACATGTGTC 59.277 55.000 1.15 6.21 44.97 3.67
4690 4946 0.673333 GATGCGGTGACATGTGTCCA 60.673 55.000 1.15 0.00 44.15 4.02
4708 4964 3.502211 GTCCAAACACATCTACCAAGGTG 59.498 47.826 1.07 0.00 39.95 4.00
4711 4967 4.133820 CAAACACATCTACCAAGGTGTCA 58.866 43.478 1.07 0.00 43.94 3.58
4715 4971 0.912486 ATCTACCAAGGTGTCAGGGC 59.088 55.000 1.07 0.00 0.00 5.19
4717 4973 1.151899 TACCAAGGTGTCAGGGCCT 60.152 57.895 0.00 0.00 36.51 5.19
4723 4979 2.705658 CAAGGTGTCAGGGCCTATGATA 59.294 50.000 5.28 8.76 34.15 2.15
4738 4994 7.040409 GGGCCTATGATAATTACTTCAAGTTGG 60.040 40.741 0.84 0.00 0.00 3.77
4740 4996 9.120538 GCCTATGATAATTACTTCAAGTTGGAA 57.879 33.333 0.00 0.00 0.00 3.53
4748 5004 2.893489 ACTTCAAGTTGGAAAGGGATGC 59.107 45.455 2.34 0.00 0.00 3.91
4749 5005 2.978156 TCAAGTTGGAAAGGGATGCT 57.022 45.000 2.34 0.00 0.00 3.79
4750 5006 4.202567 ACTTCAAGTTGGAAAGGGATGCTA 60.203 41.667 2.34 0.00 0.00 3.49
4751 5007 4.591321 TCAAGTTGGAAAGGGATGCTAT 57.409 40.909 2.34 0.00 0.00 2.97
4762 5018 5.603170 AAGGGATGCTATTGGAAACATTG 57.397 39.130 0.00 0.00 42.32 2.82
4779 5035 6.739331 AACATTGGGTTTTCTGGTTATCAA 57.261 33.333 0.00 0.00 35.82 2.57
4787 5043 6.223120 GGTTTTCTGGTTATCAAAAGTGCAT 58.777 36.000 0.00 0.00 0.00 3.96
4788 5044 6.146021 GGTTTTCTGGTTATCAAAAGTGCATG 59.854 38.462 0.00 0.00 0.00 4.06
4792 5048 4.339748 TGGTTATCAAAAGTGCATGGCTA 58.660 39.130 0.00 0.00 0.00 3.93
4797 5053 5.762825 ATCAAAAGTGCATGGCTACTATG 57.237 39.130 0.00 0.00 0.00 2.23
4801 5057 1.696336 AGTGCATGGCTACTATGAGGG 59.304 52.381 0.00 0.00 0.00 4.30
4809 5065 1.811941 GCTACTATGAGGGTGCTTGCC 60.812 57.143 0.00 0.00 0.00 4.52
4811 5067 0.995024 ACTATGAGGGTGCTTGCCTT 59.005 50.000 0.00 0.00 0.00 4.35
4814 5070 0.112995 ATGAGGGTGCTTGCCTTTGA 59.887 50.000 0.00 0.00 0.00 2.69
4817 5073 0.178953 AGGGTGCTTGCCTTTGACAT 60.179 50.000 0.00 0.00 0.00 3.06
4829 5085 3.067320 GCCTTTGACATGGCCTTAGATTC 59.933 47.826 3.32 0.00 43.11 2.52
4832 5088 2.905075 TGACATGGCCTTAGATTCGTG 58.095 47.619 3.32 0.00 0.00 4.35
4836 5092 1.507140 TGGCCTTAGATTCGTGGGAT 58.493 50.000 3.32 0.00 0.00 3.85
4839 5095 2.548920 GGCCTTAGATTCGTGGGATGAG 60.549 54.545 0.00 0.00 0.00 2.90
4852 5108 2.247372 TGGGATGAGTACCTCTGGATGA 59.753 50.000 0.00 0.00 0.00 2.92
4855 5111 4.447908 GGGATGAGTACCTCTGGATGACTA 60.448 50.000 0.00 0.00 0.00 2.59
4870 5126 4.033358 GGATGACTAAAAGCACATGTCTCG 59.967 45.833 0.00 0.00 0.00 4.04
4883 5139 0.247460 TGTCTCGAAGCCATGGTCAG 59.753 55.000 14.67 2.97 0.00 3.51
4888 5144 2.353889 CTCGAAGCCATGGTCAGATTTG 59.646 50.000 14.67 5.33 0.00 2.32
4889 5145 1.202222 CGAAGCCATGGTCAGATTTGC 60.202 52.381 14.67 0.00 0.00 3.68
4890 5146 2.097825 GAAGCCATGGTCAGATTTGCT 58.902 47.619 14.67 0.00 0.00 3.91
4891 5147 3.282021 GAAGCCATGGTCAGATTTGCTA 58.718 45.455 14.67 0.00 0.00 3.49
4892 5148 2.648059 AGCCATGGTCAGATTTGCTAC 58.352 47.619 14.67 0.00 0.00 3.58
4893 5149 2.240667 AGCCATGGTCAGATTTGCTACT 59.759 45.455 14.67 0.00 0.00 2.57
4894 5150 3.455910 AGCCATGGTCAGATTTGCTACTA 59.544 43.478 14.67 0.00 0.00 1.82
4895 5151 3.561725 GCCATGGTCAGATTTGCTACTAC 59.438 47.826 14.67 0.00 0.00 2.73
4896 5152 4.769688 CCATGGTCAGATTTGCTACTACA 58.230 43.478 2.57 0.00 0.00 2.74
4897 5153 5.371526 CCATGGTCAGATTTGCTACTACAT 58.628 41.667 2.57 0.00 0.00 2.29
4898 5154 5.824624 CCATGGTCAGATTTGCTACTACATT 59.175 40.000 2.57 0.00 0.00 2.71
4899 5155 6.238566 CCATGGTCAGATTTGCTACTACATTG 60.239 42.308 2.57 0.00 0.00 2.82
4900 5156 5.185454 TGGTCAGATTTGCTACTACATTGG 58.815 41.667 0.00 0.00 0.00 3.16
4901 5157 5.186198 GGTCAGATTTGCTACTACATTGGT 58.814 41.667 0.00 0.00 0.00 3.67
4902 5158 5.294552 GGTCAGATTTGCTACTACATTGGTC 59.705 44.000 0.00 0.00 0.00 4.02
4903 5159 5.874810 GTCAGATTTGCTACTACATTGGTCA 59.125 40.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 9.703892 CTTATAAAGCTAGCACATGAGAGTAAT 57.296 33.333 18.83 0.00 0.00 1.89
94 95 8.914011 TCTTATAAAGCTAGCACATGAGAGTAA 58.086 33.333 18.83 2.91 0.00 2.24
95 96 8.465273 TCTTATAAAGCTAGCACATGAGAGTA 57.535 34.615 18.83 0.00 0.00 2.59
96 97 7.069331 ACTCTTATAAAGCTAGCACATGAGAGT 59.931 37.037 27.04 27.04 37.60 3.24
97 98 7.432869 ACTCTTATAAAGCTAGCACATGAGAG 58.567 38.462 26.22 26.22 36.16 3.20
98 99 7.353414 ACTCTTATAAAGCTAGCACATGAGA 57.647 36.000 18.83 15.35 0.00 3.27
99 100 8.356657 ACTACTCTTATAAAGCTAGCACATGAG 58.643 37.037 18.83 15.39 0.00 2.90
320 348 8.431910 AAGGAAACTACTGATTGTAAGACCTA 57.568 34.615 0.00 0.00 42.68 3.08
657 685 1.134226 CAAGCTTGCTTTTGGCTTCG 58.866 50.000 14.65 0.00 43.28 3.79
1017 1087 4.387559 GCGAGGAAGAAGAAGAAGAAGAAC 59.612 45.833 0.00 0.00 0.00 3.01
1343 1413 2.167693 TCGCCTGGACTAACCTTGTATG 59.832 50.000 0.00 0.00 39.86 2.39
1353 1423 3.755628 GCCGTGTCGCCTGGACTA 61.756 66.667 0.00 0.00 46.24 2.59
1396 1466 0.823356 ACAATGTTCCACGCAAGCCT 60.823 50.000 0.00 0.00 45.62 4.58
1420 1490 2.046313 CGTGATTGTCTTGTTTGCTGC 58.954 47.619 0.00 0.00 0.00 5.25
1446 1516 2.501723 GGAGGAACAGCCACATAGAAGA 59.498 50.000 0.00 0.00 40.02 2.87
1716 1786 4.766404 AACTTTAGAATTTGCAGTCGGG 57.234 40.909 0.00 0.00 0.00 5.14
1814 1888 7.391833 AGGAGAGAAACAACATTAGATGGAAAC 59.608 37.037 0.00 0.00 33.60 2.78
1839 1913 7.918033 GTGAAAAGAGAAAAGGAAAAAGAGGAG 59.082 37.037 0.00 0.00 0.00 3.69
1994 2068 1.347707 TGTTCGAATCAAGCAGGGAGT 59.652 47.619 0.00 0.00 0.00 3.85
2433 2592 5.621422 CATGAACTTCTTACATGTGTTCCG 58.379 41.667 18.21 9.46 36.98 4.30
2521 2680 5.426689 TCATCTTAACTGCAATCTCCTGT 57.573 39.130 0.00 0.00 0.00 4.00
2634 2793 5.684704 TGGATGTTCATTTCCTGGTAGATC 58.315 41.667 0.00 0.00 32.95 2.75
2729 2906 3.243975 ACTCGTAAACAAGGTACAGGTGG 60.244 47.826 0.00 0.00 0.00 4.61
2936 3113 3.731136 TGCGTTCTTGCAGTCCAC 58.269 55.556 0.00 0.00 40.62 4.02
3109 3289 4.337274 CAGATTGCAATCAATACCTGAGCA 59.663 41.667 34.59 0.00 42.60 4.26
3295 3476 7.038154 TGGCATTACTATTACATTTGAAGCC 57.962 36.000 0.00 0.00 36.50 4.35
3485 3666 2.226437 GACGTTCACAGGCATTTGTCAT 59.774 45.455 0.00 0.00 0.00 3.06
3486 3667 1.601903 GACGTTCACAGGCATTTGTCA 59.398 47.619 0.00 0.00 0.00 3.58
3487 3668 1.601903 TGACGTTCACAGGCATTTGTC 59.398 47.619 0.00 0.00 0.00 3.18
3488 3669 1.603802 CTGACGTTCACAGGCATTTGT 59.396 47.619 0.00 0.00 0.00 2.83
3489 3670 1.872952 TCTGACGTTCACAGGCATTTG 59.127 47.619 3.21 0.00 36.22 2.32
3496 3677 1.858091 AACAGCTCTGACGTTCACAG 58.142 50.000 3.60 0.00 36.80 3.66
3500 3681 4.474226 AATTGAAACAGCTCTGACGTTC 57.526 40.909 3.60 5.18 0.00 3.95
3503 3684 8.230486 ACTATAAAAATTGAAACAGCTCTGACG 58.770 33.333 3.60 0.00 0.00 4.35
3530 3711 7.697352 TGCAAACATTGTCAAAAACAGATAG 57.303 32.000 0.00 0.00 39.58 2.08
3556 3741 5.633830 TTTGAATGCTTTCCTCATCTGTC 57.366 39.130 9.63 0.00 0.00 3.51
3572 3795 5.589452 GCTCTCCACATCTTCTGATTTGAAT 59.411 40.000 0.00 0.00 33.48 2.57
3632 3855 6.021030 ACACACTTCTTCTATGGGGTAGTTA 58.979 40.000 0.00 0.00 0.00 2.24
3710 3933 3.149981 GGTAGAAATGCAGGATTAGGCC 58.850 50.000 0.00 0.00 0.00 5.19
3778 4002 0.615331 TCATCTCAGGCCTGTCCAAC 59.385 55.000 31.58 0.00 37.29 3.77
3925 4151 7.699391 GCACACTTTTCGTATCTACTGTACATA 59.301 37.037 0.00 0.00 0.00 2.29
3931 4157 3.617263 GGGCACACTTTTCGTATCTACTG 59.383 47.826 0.00 0.00 0.00 2.74
3932 4158 3.369157 GGGGCACACTTTTCGTATCTACT 60.369 47.826 0.00 0.00 0.00 2.57
3933 4159 2.934553 GGGGCACACTTTTCGTATCTAC 59.065 50.000 0.00 0.00 0.00 2.59
3934 4160 2.835764 AGGGGCACACTTTTCGTATCTA 59.164 45.455 0.00 0.00 0.00 1.98
3935 4161 1.628846 AGGGGCACACTTTTCGTATCT 59.371 47.619 0.00 0.00 0.00 1.98
3943 4174 2.086610 AATCAACAGGGGCACACTTT 57.913 45.000 0.00 0.00 0.00 2.66
3952 4183 3.067461 TCGTCCAACAAAAATCAACAGGG 59.933 43.478 0.00 0.00 0.00 4.45
3972 4203 2.293122 TGCAAACCAAGAACCATTCTCG 59.707 45.455 0.00 0.00 39.61 4.04
4035 4276 4.127171 TGACTGGCTTCACTCAGTAAAAC 58.873 43.478 0.00 0.00 43.41 2.43
4039 4280 4.342378 GGATATGACTGGCTTCACTCAGTA 59.658 45.833 0.00 0.00 43.41 2.74
4051 4292 3.409570 CCAGCAAGATGGATATGACTGG 58.590 50.000 0.00 0.00 43.57 4.00
4089 4330 5.093236 AGGAATGGAGGGAGTATCATGTA 57.907 43.478 0.00 0.00 36.25 2.29
4090 4331 3.946824 AGGAATGGAGGGAGTATCATGT 58.053 45.455 0.00 0.00 36.25 3.21
4091 4332 6.439636 TTTAGGAATGGAGGGAGTATCATG 57.560 41.667 0.00 0.00 36.25 3.07
4092 4333 8.940012 ATATTTAGGAATGGAGGGAGTATCAT 57.060 34.615 0.00 0.00 36.25 2.45
4093 4334 9.852784 TTATATTTAGGAATGGAGGGAGTATCA 57.147 33.333 0.00 0.00 36.25 2.15
4095 4336 9.860393 ACTTATATTTAGGAATGGAGGGAGTAT 57.140 33.333 0.00 0.00 0.00 2.12
4096 4337 9.322769 GACTTATATTTAGGAATGGAGGGAGTA 57.677 37.037 0.00 0.00 0.00 2.59
4097 4338 7.237887 GGACTTATATTTAGGAATGGAGGGAGT 59.762 40.741 0.00 0.00 0.00 3.85
4098 4339 7.459444 AGGACTTATATTTAGGAATGGAGGGAG 59.541 40.741 0.00 0.00 0.00 4.30
4099 4340 7.321530 AGGACTTATATTTAGGAATGGAGGGA 58.678 38.462 0.00 0.00 0.00 4.20
4100 4341 7.575499 AGGACTTATATTTAGGAATGGAGGG 57.425 40.000 0.00 0.00 0.00 4.30
4101 4342 9.868160 AAAAGGACTTATATTTAGGAATGGAGG 57.132 33.333 0.00 0.00 0.00 4.30
4134 4375 9.847224 TGCATCCGTATATAGTCTCTATAATCA 57.153 33.333 1.45 0.00 0.00 2.57
4164 4405 9.160412 AGTGAACCTATACTATAAAAGGCATCT 57.840 33.333 0.00 0.00 31.98 2.90
4165 4406 9.425577 GAGTGAACCTATACTATAAAAGGCATC 57.574 37.037 0.00 0.00 31.98 3.91
4166 4407 8.934697 TGAGTGAACCTATACTATAAAAGGCAT 58.065 33.333 0.00 0.00 31.98 4.40
4167 4408 8.313944 TGAGTGAACCTATACTATAAAAGGCA 57.686 34.615 0.00 0.00 31.98 4.75
4168 4409 9.780186 AATGAGTGAACCTATACTATAAAAGGC 57.220 33.333 0.00 0.00 31.98 4.35
4174 4415 9.982651 GAGCAAAATGAGTGAACCTATACTATA 57.017 33.333 0.00 0.00 0.00 1.31
4175 4416 8.709308 AGAGCAAAATGAGTGAACCTATACTAT 58.291 33.333 0.00 0.00 0.00 2.12
4176 4417 7.981789 CAGAGCAAAATGAGTGAACCTATACTA 59.018 37.037 0.00 0.00 0.00 1.82
4177 4418 6.820656 CAGAGCAAAATGAGTGAACCTATACT 59.179 38.462 0.00 0.00 0.00 2.12
4178 4419 6.595716 ACAGAGCAAAATGAGTGAACCTATAC 59.404 38.462 0.00 0.00 0.00 1.47
4179 4420 6.711277 ACAGAGCAAAATGAGTGAACCTATA 58.289 36.000 0.00 0.00 0.00 1.31
4180 4421 5.564550 ACAGAGCAAAATGAGTGAACCTAT 58.435 37.500 0.00 0.00 0.00 2.57
4181 4422 4.973168 ACAGAGCAAAATGAGTGAACCTA 58.027 39.130 0.00 0.00 0.00 3.08
4182 4423 3.825328 ACAGAGCAAAATGAGTGAACCT 58.175 40.909 0.00 0.00 0.00 3.50
4183 4424 5.182001 ACATACAGAGCAAAATGAGTGAACC 59.818 40.000 0.00 0.00 0.00 3.62
4184 4425 6.246420 ACATACAGAGCAAAATGAGTGAAC 57.754 37.500 0.00 0.00 0.00 3.18
4185 4426 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
4186 4427 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
4187 4428 6.815641 AGACTACATACAGAGCAAAATGAGTG 59.184 38.462 0.00 0.00 0.00 3.51
4188 4429 6.940739 AGACTACATACAGAGCAAAATGAGT 58.059 36.000 0.00 0.00 0.00 3.41
4227 4468 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
4228 4469 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4229 4470 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4230 4471 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4231 4472 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4232 4473 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4233 4474 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4234 4475 6.267014 TGACTCCCTCCGTTCCTAAATATAAG 59.733 42.308 0.00 0.00 0.00 1.73
4235 4476 6.138263 TGACTCCCTCCGTTCCTAAATATAA 58.862 40.000 0.00 0.00 0.00 0.98
4236 4477 5.708544 TGACTCCCTCCGTTCCTAAATATA 58.291 41.667 0.00 0.00 0.00 0.86
4237 4478 4.553678 TGACTCCCTCCGTTCCTAAATAT 58.446 43.478 0.00 0.00 0.00 1.28
4238 4479 3.958798 CTGACTCCCTCCGTTCCTAAATA 59.041 47.826 0.00 0.00 0.00 1.40
4239 4480 2.766828 CTGACTCCCTCCGTTCCTAAAT 59.233 50.000 0.00 0.00 0.00 1.40
4240 4481 2.176889 CTGACTCCCTCCGTTCCTAAA 58.823 52.381 0.00 0.00 0.00 1.85
4241 4482 1.076677 ACTGACTCCCTCCGTTCCTAA 59.923 52.381 0.00 0.00 0.00 2.69
4242 4483 0.702902 ACTGACTCCCTCCGTTCCTA 59.297 55.000 0.00 0.00 0.00 2.94
4243 4484 0.900647 CACTGACTCCCTCCGTTCCT 60.901 60.000 0.00 0.00 0.00 3.36
4244 4485 1.186267 ACACTGACTCCCTCCGTTCC 61.186 60.000 0.00 0.00 0.00 3.62
4245 4486 0.680061 AACACTGACTCCCTCCGTTC 59.320 55.000 0.00 0.00 0.00 3.95
4246 4487 0.393077 CAACACTGACTCCCTCCGTT 59.607 55.000 0.00 0.00 0.00 4.44
4247 4488 1.472662 CCAACACTGACTCCCTCCGT 61.473 60.000 0.00 0.00 0.00 4.69
4248 4489 1.185618 TCCAACACTGACTCCCTCCG 61.186 60.000 0.00 0.00 0.00 4.63
4249 4490 0.610687 CTCCAACACTGACTCCCTCC 59.389 60.000 0.00 0.00 0.00 4.30
4250 4491 0.610687 CCTCCAACACTGACTCCCTC 59.389 60.000 0.00 0.00 0.00 4.30
4251 4492 0.838122 CCCTCCAACACTGACTCCCT 60.838 60.000 0.00 0.00 0.00 4.20
4252 4493 0.836400 TCCCTCCAACACTGACTCCC 60.836 60.000 0.00 0.00 0.00 4.30
4253 4494 0.610687 CTCCCTCCAACACTGACTCC 59.389 60.000 0.00 0.00 0.00 3.85
4254 4495 1.343069 ACTCCCTCCAACACTGACTC 58.657 55.000 0.00 0.00 0.00 3.36
4255 4496 2.249139 GTACTCCCTCCAACACTGACT 58.751 52.381 0.00 0.00 0.00 3.41
4256 4497 1.968493 TGTACTCCCTCCAACACTGAC 59.032 52.381 0.00 0.00 0.00 3.51
4257 4498 2.391926 TGTACTCCCTCCAACACTGA 57.608 50.000 0.00 0.00 0.00 3.41
4258 4499 2.936993 GCATGTACTCCCTCCAACACTG 60.937 54.545 0.00 0.00 0.00 3.66
4259 4500 1.279271 GCATGTACTCCCTCCAACACT 59.721 52.381 0.00 0.00 0.00 3.55
4260 4501 1.739067 GCATGTACTCCCTCCAACAC 58.261 55.000 0.00 0.00 0.00 3.32
4261 4502 0.249120 CGCATGTACTCCCTCCAACA 59.751 55.000 0.00 0.00 0.00 3.33
4262 4503 0.535335 TCGCATGTACTCCCTCCAAC 59.465 55.000 0.00 0.00 0.00 3.77
4263 4504 0.535335 GTCGCATGTACTCCCTCCAA 59.465 55.000 0.00 0.00 0.00 3.53
4264 4505 0.324368 AGTCGCATGTACTCCCTCCA 60.324 55.000 0.00 0.00 0.00 3.86
4265 4506 0.824759 AAGTCGCATGTACTCCCTCC 59.175 55.000 3.71 0.00 0.00 4.30
4266 4507 1.751924 AGAAGTCGCATGTACTCCCTC 59.248 52.381 3.71 0.00 0.00 4.30
4267 4508 1.751924 GAGAAGTCGCATGTACTCCCT 59.248 52.381 3.71 4.75 0.00 4.20
4268 4509 1.202428 GGAGAAGTCGCATGTACTCCC 60.202 57.143 0.00 3.23 38.23 4.30
4269 4510 1.476891 TGGAGAAGTCGCATGTACTCC 59.523 52.381 0.00 0.00 42.64 3.85
4270 4511 2.941453 TGGAGAAGTCGCATGTACTC 57.059 50.000 3.71 0.00 0.00 2.59
4271 4512 3.678056 TTTGGAGAAGTCGCATGTACT 57.322 42.857 0.00 0.00 0.00 2.73
4272 4513 4.946784 AATTTGGAGAAGTCGCATGTAC 57.053 40.909 0.00 0.00 0.00 2.90
4273 4514 7.011389 CAGATAAATTTGGAGAAGTCGCATGTA 59.989 37.037 0.00 0.00 0.00 2.29
4274 4515 5.882557 AGATAAATTTGGAGAAGTCGCATGT 59.117 36.000 0.00 0.00 0.00 3.21
4275 4516 6.197276 CAGATAAATTTGGAGAAGTCGCATG 58.803 40.000 0.00 0.00 0.00 4.06
4276 4517 5.220931 GCAGATAAATTTGGAGAAGTCGCAT 60.221 40.000 0.00 0.00 0.00 4.73
4277 4518 4.094887 GCAGATAAATTTGGAGAAGTCGCA 59.905 41.667 0.00 0.00 0.00 5.10
4278 4519 4.094887 TGCAGATAAATTTGGAGAAGTCGC 59.905 41.667 0.00 0.00 0.00 5.19
4279 4520 5.801350 TGCAGATAAATTTGGAGAAGTCG 57.199 39.130 0.00 0.00 0.00 4.18
4280 4521 6.913170 TGTTGCAGATAAATTTGGAGAAGTC 58.087 36.000 0.00 0.00 0.00 3.01
4281 4522 6.899393 TGTTGCAGATAAATTTGGAGAAGT 57.101 33.333 0.00 0.00 0.00 3.01
4282 4523 9.859427 TTATTGTTGCAGATAAATTTGGAGAAG 57.141 29.630 0.00 0.00 0.00 2.85
4283 4524 9.638239 GTTATTGTTGCAGATAAATTTGGAGAA 57.362 29.630 0.00 0.00 0.00 2.87
4284 4525 9.023962 AGTTATTGTTGCAGATAAATTTGGAGA 57.976 29.630 0.00 0.00 0.00 3.71
4285 4526 9.643693 AAGTTATTGTTGCAGATAAATTTGGAG 57.356 29.630 0.00 0.00 0.00 3.86
4294 4535 9.405587 GCTTTGTTTAAGTTATTGTTGCAGATA 57.594 29.630 0.00 0.00 36.19 1.98
4295 4536 7.114811 CGCTTTGTTTAAGTTATTGTTGCAGAT 59.885 33.333 0.00 0.00 36.19 2.90
4296 4537 6.416455 CGCTTTGTTTAAGTTATTGTTGCAGA 59.584 34.615 0.00 0.00 36.19 4.26
4297 4538 6.416455 TCGCTTTGTTTAAGTTATTGTTGCAG 59.584 34.615 0.00 0.00 36.19 4.41
4298 4539 6.266323 TCGCTTTGTTTAAGTTATTGTTGCA 58.734 32.000 0.00 0.00 36.19 4.08
4299 4540 6.635239 TCTCGCTTTGTTTAAGTTATTGTTGC 59.365 34.615 0.00 0.00 36.19 4.17
4300 4541 8.469125 GTTCTCGCTTTGTTTAAGTTATTGTTG 58.531 33.333 0.00 0.00 36.19 3.33
4301 4542 7.646526 GGTTCTCGCTTTGTTTAAGTTATTGTT 59.353 33.333 0.00 0.00 36.19 2.83
4302 4543 7.136772 GGTTCTCGCTTTGTTTAAGTTATTGT 58.863 34.615 0.00 0.00 36.19 2.71
4303 4544 6.302313 CGGTTCTCGCTTTGTTTAAGTTATTG 59.698 38.462 0.00 0.00 36.19 1.90
4304 4545 6.368213 CGGTTCTCGCTTTGTTTAAGTTATT 58.632 36.000 0.00 0.00 36.19 1.40
4305 4546 5.106830 CCGGTTCTCGCTTTGTTTAAGTTAT 60.107 40.000 0.00 0.00 36.19 1.89
4306 4547 4.211794 CCGGTTCTCGCTTTGTTTAAGTTA 59.788 41.667 0.00 0.00 36.19 2.24
4307 4548 3.002965 CCGGTTCTCGCTTTGTTTAAGTT 59.997 43.478 0.00 0.00 36.19 2.66
4308 4549 2.546789 CCGGTTCTCGCTTTGTTTAAGT 59.453 45.455 0.00 0.00 36.19 2.24
4309 4550 2.664698 GCCGGTTCTCGCTTTGTTTAAG 60.665 50.000 1.90 0.00 37.59 1.85
4310 4551 1.264826 GCCGGTTCTCGCTTTGTTTAA 59.735 47.619 1.90 0.00 37.59 1.52
4311 4552 0.869730 GCCGGTTCTCGCTTTGTTTA 59.130 50.000 1.90 0.00 37.59 2.01
4312 4553 1.652563 GCCGGTTCTCGCTTTGTTT 59.347 52.632 1.90 0.00 37.59 2.83
4313 4554 2.258726 GGCCGGTTCTCGCTTTGTT 61.259 57.895 1.90 0.00 37.59 2.83
4314 4555 2.668550 GGCCGGTTCTCGCTTTGT 60.669 61.111 1.90 0.00 37.59 2.83
4315 4556 3.788766 CGGCCGGTTCTCGCTTTG 61.789 66.667 20.10 0.00 37.59 2.77
4316 4557 2.830704 CTACGGCCGGTTCTCGCTTT 62.831 60.000 31.76 6.43 37.59 3.51
4317 4558 3.352338 CTACGGCCGGTTCTCGCTT 62.352 63.158 31.76 7.29 37.59 4.68
4318 4559 3.823330 CTACGGCCGGTTCTCGCT 61.823 66.667 31.76 8.14 37.59 4.93
4329 4570 4.937431 GGATGCCTGGGCTACGGC 62.937 72.222 13.05 4.75 46.46 5.68
4330 4571 2.270874 AAAGGATGCCTGGGCTACGG 62.271 60.000 13.05 0.00 42.51 4.02
4331 4572 1.097547 CAAAGGATGCCTGGGCTACG 61.098 60.000 13.05 0.00 42.51 3.51
4332 4573 0.255890 TCAAAGGATGCCTGGGCTAC 59.744 55.000 13.05 6.62 42.51 3.58
4333 4574 0.255890 GTCAAAGGATGCCTGGGCTA 59.744 55.000 13.05 0.04 42.51 3.93
4334 4575 1.000396 GTCAAAGGATGCCTGGGCT 60.000 57.895 13.05 0.00 42.51 5.19
4335 4576 2.054453 GGTCAAAGGATGCCTGGGC 61.054 63.158 4.43 4.43 42.35 5.36
4336 4577 1.380380 GGGTCAAAGGATGCCTGGG 60.380 63.158 0.00 0.00 32.13 4.45
4337 4578 0.918983 TAGGGTCAAAGGATGCCTGG 59.081 55.000 0.00 0.00 32.13 4.45
4338 4579 1.408822 GGTAGGGTCAAAGGATGCCTG 60.409 57.143 0.00 0.00 32.13 4.85
4339 4580 0.919710 GGTAGGGTCAAAGGATGCCT 59.080 55.000 0.00 0.00 33.87 4.75
4340 4581 0.463833 CGGTAGGGTCAAAGGATGCC 60.464 60.000 0.00 0.00 0.00 4.40
4341 4582 0.539986 TCGGTAGGGTCAAAGGATGC 59.460 55.000 0.00 0.00 0.00 3.91
4342 4583 1.553248 TGTCGGTAGGGTCAAAGGATG 59.447 52.381 0.00 0.00 0.00 3.51
4343 4584 1.946984 TGTCGGTAGGGTCAAAGGAT 58.053 50.000 0.00 0.00 0.00 3.24
4344 4585 1.829222 GATGTCGGTAGGGTCAAAGGA 59.171 52.381 0.00 0.00 0.00 3.36
4345 4586 1.470979 CGATGTCGGTAGGGTCAAAGG 60.471 57.143 0.00 0.00 35.37 3.11
4346 4587 1.203994 ACGATGTCGGTAGGGTCAAAG 59.796 52.381 7.38 0.00 44.95 2.77
4347 4588 1.203052 GACGATGTCGGTAGGGTCAAA 59.797 52.381 7.38 0.00 44.95 2.69
4348 4589 0.813184 GACGATGTCGGTAGGGTCAA 59.187 55.000 7.38 0.00 44.95 3.18
4349 4590 0.322726 TGACGATGTCGGTAGGGTCA 60.323 55.000 7.38 0.00 44.95 4.02
4350 4591 0.813184 TTGACGATGTCGGTAGGGTC 59.187 55.000 7.38 0.00 44.95 4.46
4351 4592 1.136305 CATTGACGATGTCGGTAGGGT 59.864 52.381 7.38 0.00 44.95 4.34
4352 4593 1.538204 CCATTGACGATGTCGGTAGGG 60.538 57.143 7.38 0.00 44.95 3.53
4353 4594 1.852942 CCATTGACGATGTCGGTAGG 58.147 55.000 7.38 0.00 44.95 3.18
4354 4595 1.209128 GCCATTGACGATGTCGGTAG 58.791 55.000 7.38 0.00 44.95 3.18
4355 4596 0.526739 CGCCATTGACGATGTCGGTA 60.527 55.000 7.38 0.00 44.95 4.02
4356 4597 1.809619 CGCCATTGACGATGTCGGT 60.810 57.895 7.38 0.00 44.95 4.69
4357 4598 3.005898 CGCCATTGACGATGTCGG 58.994 61.111 7.38 0.00 44.95 4.79
4358 4599 1.518352 TCCGCCATTGACGATGTCG 60.518 57.895 0.00 0.00 46.33 4.35
4359 4600 0.739462 TGTCCGCCATTGACGATGTC 60.739 55.000 1.96 0.00 35.46 3.06
4360 4601 1.019278 GTGTCCGCCATTGACGATGT 61.019 55.000 1.96 0.00 35.46 3.06
4361 4602 1.705337 GGTGTCCGCCATTGACGATG 61.705 60.000 0.00 0.00 35.46 3.84
4362 4603 1.449601 GGTGTCCGCCATTGACGAT 60.450 57.895 0.00 0.00 35.46 3.73
4363 4604 2.047655 GGTGTCCGCCATTGACGA 60.048 61.111 0.00 0.00 35.46 4.20
4364 4605 1.745115 ATGGTGTCCGCCATTGACG 60.745 57.895 6.55 0.00 46.33 4.35
4365 4606 0.960364 ACATGGTGTCCGCCATTGAC 60.960 55.000 9.62 0.00 46.33 3.18
4366 4607 0.676466 GACATGGTGTCCGCCATTGA 60.676 55.000 9.62 0.00 46.33 2.57
4367 4608 1.802636 GACATGGTGTCCGCCATTG 59.197 57.895 9.62 8.27 46.33 2.82
4368 4609 4.319133 GACATGGTGTCCGCCATT 57.681 55.556 9.62 2.59 46.33 3.16
4375 4616 1.148310 CACTTGTCGGACATGGTGTC 58.852 55.000 24.08 1.54 46.23 3.67
4376 4617 0.468226 ACACTTGTCGGACATGGTGT 59.532 50.000 28.41 28.41 39.09 4.16
4377 4618 1.531149 GAACACTTGTCGGACATGGTG 59.469 52.381 27.53 27.53 37.82 4.17
4378 4619 1.140052 TGAACACTTGTCGGACATGGT 59.860 47.619 22.96 14.05 0.00 3.55
4379 4620 1.877637 TGAACACTTGTCGGACATGG 58.122 50.000 22.96 16.09 0.00 3.66
4380 4621 3.250762 ACAATGAACACTTGTCGGACATG 59.749 43.478 19.08 19.08 31.29 3.21
4381 4622 3.476552 ACAATGAACACTTGTCGGACAT 58.523 40.909 12.26 0.00 31.29 3.06
4382 4623 2.912771 ACAATGAACACTTGTCGGACA 58.087 42.857 6.76 6.76 31.29 4.02
4383 4624 3.963383 AACAATGAACACTTGTCGGAC 57.037 42.857 0.00 0.00 35.84 4.79
4384 4625 5.120399 AGTAAACAATGAACACTTGTCGGA 58.880 37.500 0.00 0.00 35.84 4.55
4385 4626 5.418310 AGTAAACAATGAACACTTGTCGG 57.582 39.130 0.00 0.00 35.84 4.79
4386 4627 6.964370 TCAAAGTAAACAATGAACACTTGTCG 59.036 34.615 0.00 0.00 35.84 4.35
4387 4628 8.682128 TTCAAAGTAAACAATGAACACTTGTC 57.318 30.769 0.00 0.00 35.84 3.18
4388 4629 7.275560 GCTTCAAAGTAAACAATGAACACTTGT 59.724 33.333 0.00 0.00 38.44 3.16
4389 4630 7.275341 TGCTTCAAAGTAAACAATGAACACTTG 59.725 33.333 0.00 0.00 30.20 3.16
4390 4631 7.319646 TGCTTCAAAGTAAACAATGAACACTT 58.680 30.769 0.00 0.00 0.00 3.16
4391 4632 6.862209 TGCTTCAAAGTAAACAATGAACACT 58.138 32.000 0.00 0.00 0.00 3.55
4392 4633 7.518731 TTGCTTCAAAGTAAACAATGAACAC 57.481 32.000 0.00 0.00 0.00 3.32
4424 4665 2.769095 AGAAGTACTCCTGGCCTGATTC 59.231 50.000 11.88 5.20 0.00 2.52
4425 4666 2.839228 AGAAGTACTCCTGGCCTGATT 58.161 47.619 11.88 1.08 0.00 2.57
4426 4667 2.559381 AGAAGTACTCCTGGCCTGAT 57.441 50.000 11.88 0.00 0.00 2.90
4428 4669 3.034635 ACATAGAAGTACTCCTGGCCTG 58.965 50.000 3.32 2.54 0.00 4.85
4429 4670 3.301274 GACATAGAAGTACTCCTGGCCT 58.699 50.000 3.32 0.00 0.00 5.19
4431 4672 2.950309 TCGACATAGAAGTACTCCTGGC 59.050 50.000 0.00 0.00 0.00 4.85
4432 4673 4.200874 ACTCGACATAGAAGTACTCCTGG 58.799 47.826 0.00 0.00 0.00 4.45
4440 4682 7.323420 TGAATTCATGAACTCGACATAGAAGT 58.677 34.615 11.07 0.00 0.00 3.01
4457 4699 4.503910 TCGTTCGACCAAGATGAATTCAT 58.496 39.130 20.85 20.85 39.70 2.57
4460 4702 3.056107 TCCTCGTTCGACCAAGATGAATT 60.056 43.478 0.00 0.00 0.00 2.17
4467 4709 2.094700 TCTTCATCCTCGTTCGACCAAG 60.095 50.000 0.00 0.00 0.00 3.61
4470 4712 2.099263 TCATCTTCATCCTCGTTCGACC 59.901 50.000 0.00 0.00 0.00 4.79
4475 4717 5.089970 TCAACATCATCTTCATCCTCGTT 57.910 39.130 0.00 0.00 0.00 3.85
4476 4718 4.743057 TCAACATCATCTTCATCCTCGT 57.257 40.909 0.00 0.00 0.00 4.18
4477 4719 4.510711 CCTTCAACATCATCTTCATCCTCG 59.489 45.833 0.00 0.00 0.00 4.63
4482 4724 7.117397 AGAATCACCTTCAACATCATCTTCAT 58.883 34.615 0.00 0.00 36.24 2.57
4483 4725 6.479006 AGAATCACCTTCAACATCATCTTCA 58.521 36.000 0.00 0.00 36.24 3.02
4484 4726 6.998968 AGAATCACCTTCAACATCATCTTC 57.001 37.500 0.00 0.00 36.24 2.87
4485 4727 6.944290 TCAAGAATCACCTTCAACATCATCTT 59.056 34.615 0.00 0.00 36.24 2.40
4488 4730 6.944290 TCTTCAAGAATCACCTTCAACATCAT 59.056 34.615 0.00 0.00 36.24 2.45
4501 4757 2.283298 GCTCCGCATCTTCAAGAATCA 58.717 47.619 0.00 0.00 0.00 2.57
4507 4763 2.390599 GCACGCTCCGCATCTTCAA 61.391 57.895 0.00 0.00 0.00 2.69
4511 4767 3.300934 TTCTGCACGCTCCGCATCT 62.301 57.895 0.00 0.00 39.02 2.90
4514 4770 3.921767 CTCTTCTGCACGCTCCGCA 62.922 63.158 0.00 0.00 37.88 5.69
4521 4777 1.002366 GTACCATGCTCTTCTGCACG 58.998 55.000 0.00 0.00 46.33 5.34
4529 4785 3.055094 CCTTGTAGTTGGTACCATGCTCT 60.055 47.826 17.17 13.81 0.00 4.09
4536 4792 3.775261 TGAACCCTTGTAGTTGGTACC 57.225 47.619 4.43 4.43 0.00 3.34
4537 4793 7.094506 CCTTTATTGAACCCTTGTAGTTGGTAC 60.095 40.741 0.00 0.00 0.00 3.34
4539 4795 5.773176 CCTTTATTGAACCCTTGTAGTTGGT 59.227 40.000 0.00 0.00 0.00 3.67
4540 4796 5.185056 CCCTTTATTGAACCCTTGTAGTTGG 59.815 44.000 0.00 0.00 0.00 3.77
4544 4800 5.414765 GTGTCCCTTTATTGAACCCTTGTAG 59.585 44.000 0.00 0.00 0.00 2.74
4550 4806 2.089201 CGGTGTCCCTTTATTGAACCC 58.911 52.381 0.00 0.00 0.00 4.11
4568 4824 2.254459 CTCTGTCGATTCAACACTCGG 58.746 52.381 0.00 0.00 35.64 4.63
4570 4826 3.246619 GTCCTCTGTCGATTCAACACTC 58.753 50.000 0.00 0.00 0.00 3.51
4580 4836 1.591703 GCCACATGTCCTCTGTCGA 59.408 57.895 0.00 0.00 0.00 4.20
4588 4844 2.867624 ACATCATATGGCCACATGTCC 58.132 47.619 23.08 0.00 37.97 4.02
4590 4846 3.634504 ACAACATCATATGGCCACATGT 58.365 40.909 23.08 17.56 37.97 3.21
4591 4847 4.319694 CGTACAACATCATATGGCCACATG 60.320 45.833 18.39 18.39 37.97 3.21
4592 4848 3.814842 CGTACAACATCATATGGCCACAT 59.185 43.478 8.16 0.00 41.13 3.21
4593 4849 3.118592 TCGTACAACATCATATGGCCACA 60.119 43.478 8.16 0.00 33.60 4.17
4594 4850 3.247648 GTCGTACAACATCATATGGCCAC 59.752 47.826 8.16 0.00 33.60 5.01
4595 4851 3.462982 GTCGTACAACATCATATGGCCA 58.537 45.455 8.56 8.56 33.60 5.36
4596 4852 2.475111 CGTCGTACAACATCATATGGCC 59.525 50.000 2.13 0.00 33.60 5.36
4604 4860 1.726845 CGTCGCCGTCGTACAACATC 61.727 60.000 0.00 0.00 36.96 3.06
4607 4863 3.167945 CCGTCGCCGTCGTACAAC 61.168 66.667 2.78 0.00 36.96 3.32
4610 4866 3.864686 TAGCCGTCGCCGTCGTAC 61.865 66.667 2.78 0.00 36.96 3.67
4624 4880 0.465642 AATAGCGGGGGCAAAGTAGC 60.466 55.000 0.00 0.00 0.00 3.58
4625 4881 1.134220 TGAATAGCGGGGGCAAAGTAG 60.134 52.381 0.00 0.00 0.00 2.57
4626 4882 0.913205 TGAATAGCGGGGGCAAAGTA 59.087 50.000 0.00 0.00 0.00 2.24
4627 4883 0.039035 TTGAATAGCGGGGGCAAAGT 59.961 50.000 0.00 0.00 0.00 2.66
4628 4884 1.135112 GTTTGAATAGCGGGGGCAAAG 60.135 52.381 0.00 0.00 0.00 2.77
4629 4885 0.892063 GTTTGAATAGCGGGGGCAAA 59.108 50.000 0.00 0.00 0.00 3.68
4631 4887 1.379309 GGTTTGAATAGCGGGGGCA 60.379 57.895 0.00 0.00 0.00 5.36
4633 4889 0.841289 TAGGGTTTGAATAGCGGGGG 59.159 55.000 0.00 0.00 0.00 5.40
4634 4890 2.951229 ATAGGGTTTGAATAGCGGGG 57.049 50.000 0.00 0.00 0.00 5.73
4635 4891 4.204012 TGAAATAGGGTTTGAATAGCGGG 58.796 43.478 0.00 0.00 0.00 6.13
4636 4892 5.449999 GGTTGAAATAGGGTTTGAATAGCGG 60.450 44.000 0.00 0.00 0.00 5.52
4643 4899 2.164338 GGCGGTTGAAATAGGGTTTGA 58.836 47.619 0.00 0.00 0.00 2.69
4644 4900 1.889829 TGGCGGTTGAAATAGGGTTTG 59.110 47.619 0.00 0.00 0.00 2.93
4645 4901 2.296073 TGGCGGTTGAAATAGGGTTT 57.704 45.000 0.00 0.00 0.00 3.27
4657 4913 0.171007 CGCATCTGAAATTGGCGGTT 59.829 50.000 0.00 0.00 43.63 4.44
4658 4914 1.802636 CGCATCTGAAATTGGCGGT 59.197 52.632 0.00 0.00 43.63 5.68
4661 4917 0.810648 TCACCGCATCTGAAATTGGC 59.189 50.000 0.00 0.00 0.00 4.52
4662 4918 1.811965 TGTCACCGCATCTGAAATTGG 59.188 47.619 0.00 0.00 0.00 3.16
4664 4920 3.084039 ACATGTCACCGCATCTGAAATT 58.916 40.909 0.00 0.00 0.00 1.82
4669 4925 0.723414 GACACATGTCACCGCATCTG 59.277 55.000 7.15 0.00 44.18 2.90
4670 4926 0.391661 GGACACATGTCACCGCATCT 60.392 55.000 13.77 0.00 46.47 2.90
4687 4943 3.137544 ACACCTTGGTAGATGTGTTTGGA 59.862 43.478 0.00 0.00 38.74 3.53
4688 4944 3.486383 ACACCTTGGTAGATGTGTTTGG 58.514 45.455 0.00 0.00 38.74 3.28
4690 4946 4.389374 CTGACACCTTGGTAGATGTGTTT 58.611 43.478 0.00 0.00 41.69 2.83
4704 4960 2.795291 TATCATAGGCCCTGACACCT 57.205 50.000 7.73 0.00 40.24 4.00
4705 4961 4.373156 AATTATCATAGGCCCTGACACC 57.627 45.455 7.73 0.00 0.00 4.16
4708 4964 6.769512 TGAAGTAATTATCATAGGCCCTGAC 58.230 40.000 7.73 0.00 0.00 3.51
4711 4967 7.394144 ACTTGAAGTAATTATCATAGGCCCT 57.606 36.000 0.00 0.00 0.00 5.19
4723 4979 6.295292 GCATCCCTTTCCAACTTGAAGTAATT 60.295 38.462 0.00 0.00 0.00 1.40
4738 4994 5.859205 ATGTTTCCAATAGCATCCCTTTC 57.141 39.130 0.00 0.00 0.00 2.62
4740 4996 4.406649 CCAATGTTTCCAATAGCATCCCTT 59.593 41.667 0.00 0.00 0.00 3.95
4748 5004 6.165577 CCAGAAAACCCAATGTTTCCAATAG 58.834 40.000 0.00 0.00 46.39 1.73
4749 5005 5.604650 ACCAGAAAACCCAATGTTTCCAATA 59.395 36.000 0.00 0.00 46.39 1.90
4750 5006 4.411869 ACCAGAAAACCCAATGTTTCCAAT 59.588 37.500 0.00 0.00 46.39 3.16
4751 5007 3.777522 ACCAGAAAACCCAATGTTTCCAA 59.222 39.130 0.00 0.00 46.39 3.53
4762 5018 4.988540 GCACTTTTGATAACCAGAAAACCC 59.011 41.667 0.00 0.00 0.00 4.11
4767 5023 4.321899 GCCATGCACTTTTGATAACCAGAA 60.322 41.667 0.00 0.00 0.00 3.02
4779 5035 3.434167 CCCTCATAGTAGCCATGCACTTT 60.434 47.826 0.00 0.00 0.00 2.66
4787 5043 1.486310 CAAGCACCCTCATAGTAGCCA 59.514 52.381 0.00 0.00 0.00 4.75
4788 5044 1.811941 GCAAGCACCCTCATAGTAGCC 60.812 57.143 0.00 0.00 0.00 3.93
4792 5048 0.995024 AAGGCAAGCACCCTCATAGT 59.005 50.000 0.00 0.00 0.00 2.12
4797 5053 0.823356 TGTCAAAGGCAAGCACCCTC 60.823 55.000 0.00 0.00 0.00 4.30
4801 5057 3.502237 CCATGTCAAAGGCAAGCAC 57.498 52.632 0.00 0.00 0.00 4.40
4809 5065 3.941483 ACGAATCTAAGGCCATGTCAAAG 59.059 43.478 5.01 0.00 0.00 2.77
4811 5067 3.270027 CACGAATCTAAGGCCATGTCAA 58.730 45.455 5.01 0.00 0.00 3.18
4814 5070 1.134098 CCCACGAATCTAAGGCCATGT 60.134 52.381 5.01 0.00 0.00 3.21
4817 5073 1.140852 CATCCCACGAATCTAAGGCCA 59.859 52.381 5.01 0.00 0.00 5.36
4821 5077 4.585162 AGGTACTCATCCCACGAATCTAAG 59.415 45.833 0.00 0.00 0.00 2.18
4822 5078 4.543689 AGGTACTCATCCCACGAATCTAA 58.456 43.478 0.00 0.00 0.00 2.10
4823 5079 4.180377 AGGTACTCATCCCACGAATCTA 57.820 45.455 0.00 0.00 0.00 1.98
4839 5095 4.870991 GTGCTTTTAGTCATCCAGAGGTAC 59.129 45.833 0.00 0.00 0.00 3.34
4852 5108 3.433615 GCTTCGAGACATGTGCTTTTAGT 59.566 43.478 1.15 0.00 0.00 2.24
4855 5111 1.537202 GGCTTCGAGACATGTGCTTTT 59.463 47.619 1.15 0.00 0.00 2.27
4870 5126 2.097825 AGCAAATCTGACCATGGCTTC 58.902 47.619 13.04 3.11 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.