AutoCloner

Multiple sequence alignment - TraesCS3D01G363900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G363900	chr3D	100.000	3671	0	0	1	3671	477891286	477894956	0.000000e+00	6780.0
1	TraesCS3D01G363900	chr3D	91.096	1898	138	15	1048	2938	253394923	253393050	0.000000e+00	2540.0
2	TraesCS3D01G363900	chr3D	87.269	487	48	9	2	475	43998501	43998986	8.970000e-151	544.0
3	TraesCS3D01G363900	chr3D	89.757	371	31	7	451	818	551241232	551240866	5.550000e-128	468.0
4	TraesCS3D01G363900	chr3D	89.918	367	32	4	453	816	557976805	557977169	5.550000e-128	468.0
5	TraesCS3D01G363900	chr3D	88.144	388	34	2	1	388	557976425	557976800	5.590000e-123	451.0
6	TraesCS3D01G363900	chr3D	85.749	414	45	4	1	412	551241612	551241211	3.390000e-115	425.0
7	TraesCS3D01G363900	chr3D	90.159	315	27	3	505	816	43998976	43999289	1.230000e-109	407.0
8	TraesCS3D01G363900	chr3B	95.967	2777	79	15	917	3671	637072795	637075560	0.000000e+00	4477.0
9	TraesCS3D01G363900	chr3A	95.732	2765	91	9	928	3671	621226802	621229560	0.000000e+00	4427.0
10	TraesCS3D01G363900	chr3A	85.743	498	47	8	1	476	746582226	746581731	4.230000e-139	505.0
11	TraesCS3D01G363900	chr5B	92.785	693	43	2	127	812	165878919	165878227	0.000000e+00	996.0
12	TraesCS3D01G363900	chr5B	92.496	693	45	2	127	812	165474443	165473751	0.000000e+00	985.0
13	TraesCS3D01G363900	chr5D	87.937	829	67	12	1	810	396920017	396920831	0.000000e+00	946.0
14	TraesCS3D01G363900	chr7A	87.148	817	73	14	1	796	138961311	138962116	0.000000e+00	898.0
15	TraesCS3D01G363900	chr7D	93.766	401	21	1	4	400	56238435	56238035	1.890000e-167	599.0
16	TraesCS3D01G363900	chr7D	93.353	331	20	2	487	816	56237707	56237378	4.260000e-134	488.0
17	TraesCS3D01G363900	chr7D	90.210	143	13	1	16	157	637146134	637146276	6.260000e-43	185.0
18	TraesCS3D01G363900	chr7D	100.000	37	0	0	383	419	56238036	56238000	6.580000e-08	69.4
19	TraesCS3D01G363900	chr4A	86.651	427	46	8	391	815	26769849	26769432	2.580000e-126	462.0
20	TraesCS3D01G363900	chr4A	90.253	277	26	1	13	288	26762965	26762689	9.690000e-96	361.0
21	TraesCS3D01G363900	chr4A	84.270	356	42	5	391	733	26762627	26762273	5.870000e-88	335.0
22	TraesCS3D01G363900	chr4B	87.306	386	47	2	2	385	672343157	672343542	1.210000e-119	440.0
23	TraesCS3D01G363900	chr6A	83.333	78	7	5	836	913	580214719	580214648	2.370000e-07	67.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G363900	chr3D	477891286	477894956	3670	False	6780.000000	6780	100.000000	1	3671	1	chr3D.!!$F1	3670
1	TraesCS3D01G363900	chr3D	253393050	253394923	1873	True	2540.000000	2540	91.096000	1048	2938	1	chr3D.!!$R1	1890
2	TraesCS3D01G363900	chr3D	43998501	43999289	788	False	475.500000	544	88.714000	2	816	2	chr3D.!!$F2	814
3	TraesCS3D01G363900	chr3D	557976425	557977169	744	False	459.500000	468	89.031000	1	816	2	chr3D.!!$F3	815
4	TraesCS3D01G363900	chr3D	551240866	551241612	746	True	446.500000	468	87.753000	1	818	2	chr3D.!!$R2	817
5	TraesCS3D01G363900	chr3B	637072795	637075560	2765	False	4477.000000	4477	95.967000	917	3671	1	chr3B.!!$F1	2754
6	TraesCS3D01G363900	chr3A	621226802	621229560	2758	False	4427.000000	4427	95.732000	928	3671	1	chr3A.!!$F1	2743
7	TraesCS3D01G363900	chr5B	165878227	165878919	692	True	996.000000	996	92.785000	127	812	1	chr5B.!!$R2	685
8	TraesCS3D01G363900	chr5B	165473751	165474443	692	True	985.000000	985	92.496000	127	812	1	chr5B.!!$R1	685
9	TraesCS3D01G363900	chr5D	396920017	396920831	814	False	946.000000	946	87.937000	1	810	1	chr5D.!!$F1	809
10	TraesCS3D01G363900	chr7A	138961311	138962116	805	False	898.000000	898	87.148000	1	796	1	chr7A.!!$F1	795
11	TraesCS3D01G363900	chr7D	56237378	56238435	1057	True	385.466667	599	95.706333	4	816	3	chr7D.!!$R1	812
12	TraesCS3D01G363900	chr4A	26762273	26762965	692	True	348.000000	361	87.261500	13	733	2	chr4A.!!$R2	720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
297	305	1.211969	CCCTCGACATCGACAACGT	59.788	57.895	0.00	44.22	3.99	F
1399	1656	1.408127	CCCTCCATGGTATTGCGTCAA	60.408	52.381	12.58	0.00	3.18	F
2013	2270	1.423541	TGTTATGCAGTCAGGGTTGGT	59.576	47.619	0.00	0.00	3.67	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1473	1730	0.110056	CAAACACATGGCGAGCACTC	60.110	55.0	0.00	0.00	3.51	R
2472	2729	0.183731	CCCTACCAAGGCTGGAATCC	59.816	60.0	9.53	46.92	3.01	R
3420	3705	0.868406	GCACCAGCACAACTACAGTC	59.132	55.0	0.00	41.58	3.51	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
87	88	2.103094	CTCCGTGCATGATCCCTCTTTA	59.897	50.000	7.72	0.00	0.00	1.85
94	96	5.048083	GTGCATGATCCCTCTTTACAACAAA	60.048	40.000	0.00	0.00	0.00	2.83
297	305	1.211969	CCCTCGACATCGACAACGT	59.788	57.895	0.00	0.00	44.22	3.99
316	324	4.719369	GACGAAGAGGCCGTGCGT	62.719	66.667	13.56	13.56	40.67	5.24
461	485	1.475034	CCCACCTCTCTCTCTCTCTCG	60.475	61.905	0.00	0.00	0.00	4.04
530	780	2.920912	TCCGACTGCTTTCCCGGT	60.921	61.111	0.00	0.00	42.34	5.28
645	895	3.636231	CCCCCGTCCACTCTGCAA	61.636	66.667	0.00	0.00	0.00	4.08
657	907	2.415857	CACTCTGCAACATGAGAGAAGC	59.584	50.000	14.32	3.30	38.42	3.86
698	951	2.159156	GGAGAAAAGTTGGCGTTGGTTT	60.159	45.455	0.00	0.00	0.00	3.27
709	962	1.808343	GCGTTGGTTTAGAAATCGGGT	59.192	47.619	0.00	0.00	0.00	5.28
787	1040	2.287103	GGACGCGAAGTTTCTTTTCAGT	59.713	45.455	15.93	0.00	0.00	3.41
818	1071	8.630917	TGACACCGAATGTTTTCCTTTATTAAA	58.369	29.630	0.00	0.00	43.56	1.52
819	1072	9.465985	GACACCGAATGTTTTCCTTTATTAAAA	57.534	29.630	0.00	0.00	43.56	1.52
820	1073	9.251792	ACACCGAATGTTTTCCTTTATTAAAAC	57.748	29.630	0.00	0.00	38.98	2.43
821	1074	8.421701	CACCGAATGTTTTCCTTTATTAAAACG	58.578	33.333	0.00	0.00	44.67	3.60
822	1075	8.136800	ACCGAATGTTTTCCTTTATTAAAACGT	58.863	29.630	0.00	0.00	44.67	3.99
823	1076	8.421701	CCGAATGTTTTCCTTTATTAAAACGTG	58.578	33.333	6.25	0.00	44.67	4.49
824	1077	8.960075	CGAATGTTTTCCTTTATTAAAACGTGT	58.040	29.630	6.25	0.00	44.67	4.49
826	1079	9.804758	AATGTTTTCCTTTATTAAAACGTGTGA	57.195	25.926	6.25	0.00	44.67	3.58
827	1080	9.974980	ATGTTTTCCTTTATTAAAACGTGTGAT	57.025	25.926	0.00	0.00	44.67	3.06
828	1081	9.239002	TGTTTTCCTTTATTAAAACGTGTGATG	57.761	29.630	0.00	0.00	44.67	3.07
829	1082	9.453325	GTTTTCCTTTATTAAAACGTGTGATGA	57.547	29.630	0.00	0.00	36.27	2.92
833	1086	9.878667	TCCTTTATTAAAACGTGTGATGATAGA	57.121	29.630	0.00	0.00	0.00	1.98
842	1095	9.871238	AAAACGTGTGATGATAGATTAGTACTT	57.129	29.630	0.00	0.00	0.00	2.24
843	1096	9.517609	AAACGTGTGATGATAGATTAGTACTTC	57.482	33.333	0.00	0.00	0.00	3.01
844	1097	8.221965	ACGTGTGATGATAGATTAGTACTTCA	57.778	34.615	0.00	0.00	0.00	3.02
845	1098	8.851145	ACGTGTGATGATAGATTAGTACTTCAT	58.149	33.333	0.00	2.61	0.00	2.57
846	1099	9.122613	CGTGTGATGATAGATTAGTACTTCATG	57.877	37.037	9.64	0.00	0.00	3.07
847	1100	9.973450	GTGTGATGATAGATTAGTACTTCATGT	57.027	33.333	9.64	0.97	0.00	3.21
848	1101	9.971922	TGTGATGATAGATTAGTACTTCATGTG	57.028	33.333	9.64	0.00	0.00	3.21
849	1102	9.973450	GTGATGATAGATTAGTACTTCATGTGT	57.027	33.333	9.64	0.00	0.00	3.72
886	1139	9.865321	AATAAAAGCGTTTAGATCACTACTACA	57.135	29.630	10.55	0.00	32.76	2.74
887	1140	7.578169	AAAAGCGTTTAGATCACTACTACAC	57.422	36.000	0.00	0.00	0.00	2.90
888	1141	4.906423	AGCGTTTAGATCACTACTACACG	58.094	43.478	0.00	0.00	42.78	4.49
889	1142	4.394300	AGCGTTTAGATCACTACTACACGT	59.606	41.667	0.00	0.00	42.28	4.49
890	1143	5.091431	GCGTTTAGATCACTACTACACGTT	58.909	41.667	0.00	0.00	42.28	3.99
891	1144	5.226772	GCGTTTAGATCACTACTACACGTTC	59.773	44.000	0.00	0.00	42.28	3.95
892	1145	6.541086	CGTTTAGATCACTACTACACGTTCT	58.459	40.000	0.00	0.00	38.42	3.01
893	1146	7.020010	CGTTTAGATCACTACTACACGTTCTT	58.980	38.462	0.00	0.00	38.42	2.52
894	1147	8.171196	CGTTTAGATCACTACTACACGTTCTTA	58.829	37.037	0.00	0.00	38.42	2.10
898	1151	8.961294	AGATCACTACTACACGTTCTTATAGT	57.039	34.615	0.00	0.00	0.00	2.12
910	1163	9.294030	ACACGTTCTTATAGTATTTCTTTACCG	57.706	33.333	0.00	0.00	0.00	4.02
911	1164	9.507280	CACGTTCTTATAGTATTTCTTTACCGA	57.493	33.333	0.00	0.00	0.00	4.69
912	1165	9.727627	ACGTTCTTATAGTATTTCTTTACCGAG	57.272	33.333	0.00	0.00	0.00	4.63
913	1166	9.941664	CGTTCTTATAGTATTTCTTTACCGAGA	57.058	33.333	0.00	0.00	0.00	4.04
923	1176	2.926200	TCTTTACCGAGAGAGTACGTCG	59.074	50.000	0.00	0.00	0.00	5.12
925	1178	3.503827	TTACCGAGAGAGTACGTCGTA	57.496	47.619	0.00	0.00	31.65	3.43
1014	1271	3.272334	GGTATGCGCCGGAAGCTG	61.272	66.667	20.41	0.00	40.39	4.24
1245	1502	2.954868	GTCATACGCGCCCACTCG	60.955	66.667	5.73	0.00	0.00	4.18
1278	1535	1.529152	TTCCCACTGCTCTCGCGTTA	61.529	55.000	5.77	0.00	39.65	3.18
1399	1656	1.408127	CCCTCCATGGTATTGCGTCAA	60.408	52.381	12.58	0.00	0.00	3.18
1473	1730	2.483876	TCAAAGTTCTTGCTCGTGGAG	58.516	47.619	0.00	0.00	0.00	3.86
1713	1970	2.004733	GTGTGTATCAAGGGCGGTTAC	58.995	52.381	0.00	0.00	0.00	2.50
2013	2270	1.423541	TGTTATGCAGTCAGGGTTGGT	59.576	47.619	0.00	0.00	0.00	3.67
2028	2285	3.129287	GGGTTGGTGCTGATAAAGACATG	59.871	47.826	0.00	0.00	0.00	3.21
2112	2369	3.949113	TGGTATTCCGCCAAATTCCTAAC	59.051	43.478	3.92	0.00	36.30	2.34
2189	2446	2.681976	CGATGAAGGCCATTGAAGTCCT	60.682	50.000	5.01	0.00	38.67	3.85
2305	2562	5.358160	GGATGGAAGTTGTTTAGGAGAATGG	59.642	44.000	0.00	0.00	0.00	3.16
2942	3209	6.548251	TGATGTCGTGGAGTAATATTAGGTCA	59.452	38.462	0.00	0.00	0.00	4.02
3328	3611	7.072030	GTCGAAATGATATAATCAGCACAACC	58.928	38.462	0.00	0.00	43.53	3.77
3330	3613	7.041848	TCGAAATGATATAATCAGCACAACCTG	60.042	37.037	0.00	0.00	43.53	4.00
3469	3754	8.470657	AGATCTTTTAAAGAAAGCCAAAGAGT	57.529	30.769	11.63	0.00	41.63	3.24
3470	3755	9.574516	AGATCTTTTAAAGAAAGCCAAAGAGTA	57.425	29.630	11.63	0.00	41.63	2.59

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
297	305	4.415332	GCACGGCCTCTTCGTCGA	62.415	66.667	0.00	0.00	38.94	4.20
316	324	3.215568	CCTGGTGTTGTGGCGCAA	61.216	61.111	10.83	9.85	34.16	4.85
323	331	2.883828	CGAGCTCCCCTGGTGTTGT	61.884	63.158	8.47	0.00	0.00	3.32
461	485	1.206849	CTGTGAAGAGGAGAAGGAGGC	59.793	57.143	0.00	0.00	0.00	4.70
530	780	3.157252	GGATCTGGCCCGAGCTCA	61.157	66.667	15.40	0.00	39.73	4.26
645	895	0.457443	TCGCATCGCTTCTCTCATGT	59.543	50.000	0.00	0.00	0.00	3.21
657	907	2.351253	CCCACTCTATTCTCTCGCATCG	60.351	54.545	0.00	0.00	0.00	3.84
698	951	2.500098	CTCCACCTTCACCCGATTTCTA	59.500	50.000	0.00	0.00	0.00	2.10
709	962	0.037326	GATGCACGTCTCCACCTTCA	60.037	55.000	0.00	0.00	0.00	3.02
801	1054	9.974980	ATCACACGTTTTAATAAAGGAAAACAT	57.025	25.926	9.98	0.00	42.90	2.71
802	1055	9.239002	CATCACACGTTTTAATAAAGGAAAACA	57.761	29.630	9.98	0.00	42.90	2.83
818	1071	8.683615	TGAAGTACTAATCTATCATCACACGTT	58.316	33.333	0.00	0.00	0.00	3.99
819	1072	8.221965	TGAAGTACTAATCTATCATCACACGT	57.778	34.615	0.00	0.00	0.00	4.49
820	1073	9.122613	CATGAAGTACTAATCTATCATCACACG	57.877	37.037	0.00	0.00	0.00	4.49
821	1074	9.973450	ACATGAAGTACTAATCTATCATCACAC	57.027	33.333	0.00	0.00	0.00	3.82
822	1075	9.971922	CACATGAAGTACTAATCTATCATCACA	57.028	33.333	0.00	0.00	0.00	3.58
823	1076	9.973450	ACACATGAAGTACTAATCTATCATCAC	57.027	33.333	0.00	0.00	0.00	3.06
860	1113	9.865321	TGTAGTAGTGATCTAAACGCTTTTATT	57.135	29.630	0.00	0.00	0.00	1.40
861	1114	9.298774	GTGTAGTAGTGATCTAAACGCTTTTAT	57.701	33.333	0.00	0.00	0.00	1.40
862	1115	7.482743	CGTGTAGTAGTGATCTAAACGCTTTTA	59.517	37.037	3.38	0.00	40.53	1.52
863	1116	6.307318	CGTGTAGTAGTGATCTAAACGCTTTT	59.693	38.462	3.38	0.00	40.53	2.27
864	1117	5.798934	CGTGTAGTAGTGATCTAAACGCTTT	59.201	40.000	3.38	0.00	40.53	3.51
865	1118	5.106396	ACGTGTAGTAGTGATCTAAACGCTT	60.106	40.000	13.29	0.00	46.62	4.68
866	1119	4.394300	ACGTGTAGTAGTGATCTAAACGCT	59.606	41.667	13.29	0.00	46.62	5.07
867	1120	4.656041	ACGTGTAGTAGTGATCTAAACGC	58.344	43.478	13.29	2.55	46.62	4.84
873	1126	8.961294	ACTATAAGAACGTGTAGTAGTGATCT	57.039	34.615	0.00	0.00	0.00	2.75
884	1137	9.294030	CGGTAAAGAAATACTATAAGAACGTGT	57.706	33.333	0.00	0.00	0.00	4.49
885	1138	9.507280	TCGGTAAAGAAATACTATAAGAACGTG	57.493	33.333	0.00	0.00	0.00	4.49
886	1139	9.727627	CTCGGTAAAGAAATACTATAAGAACGT	57.272	33.333	0.00	0.00	0.00	3.99
887	1140	9.941664	TCTCGGTAAAGAAATACTATAAGAACG	57.058	33.333	0.00	0.00	0.00	3.95
894	1147	8.772705	CGTACTCTCTCGGTAAAGAAATACTAT	58.227	37.037	0.00	0.00	0.00	2.12
895	1148	7.766278	ACGTACTCTCTCGGTAAAGAAATACTA	59.234	37.037	0.00	0.00	0.00	1.82
896	1149	6.597280	ACGTACTCTCTCGGTAAAGAAATACT	59.403	38.462	0.00	0.00	0.00	2.12
897	1150	6.780127	ACGTACTCTCTCGGTAAAGAAATAC	58.220	40.000	0.00	0.00	0.00	1.89
898	1151	6.237942	CGACGTACTCTCTCGGTAAAGAAATA	60.238	42.308	0.00	0.00	0.00	1.40
899	1152	5.447010	CGACGTACTCTCTCGGTAAAGAAAT	60.447	44.000	0.00	0.00	0.00	2.17
900	1153	4.143030	CGACGTACTCTCTCGGTAAAGAAA	60.143	45.833	0.00	0.00	0.00	2.52
901	1154	3.369147	CGACGTACTCTCTCGGTAAAGAA	59.631	47.826	0.00	0.00	0.00	2.52
902	1155	2.926200	CGACGTACTCTCTCGGTAAAGA	59.074	50.000	0.00	0.00	0.00	2.52
903	1156	2.670414	ACGACGTACTCTCTCGGTAAAG	59.330	50.000	0.00	0.00	0.00	1.85
904	1157	2.688507	ACGACGTACTCTCTCGGTAAA	58.311	47.619	0.00	0.00	0.00	2.01
905	1158	2.370281	ACGACGTACTCTCTCGGTAA	57.630	50.000	0.00	0.00	0.00	2.85
906	1159	3.503827	TTACGACGTACTCTCTCGGTA	57.496	47.619	7.33	0.00	0.00	4.02
907	1160	2.370281	TTACGACGTACTCTCTCGGT	57.630	50.000	7.33	0.00	0.00	4.69
908	1161	3.303001	GGATTTACGACGTACTCTCTCGG	60.303	52.174	7.33	0.00	0.00	4.63
909	1162	3.308053	TGGATTTACGACGTACTCTCTCG	59.692	47.826	7.33	0.00	0.00	4.04
910	1163	4.871993	TGGATTTACGACGTACTCTCTC	57.128	45.455	7.33	0.73	0.00	3.20
911	1164	4.436584	CGTTGGATTTACGACGTACTCTCT	60.437	45.833	7.33	0.00	41.98	3.10
912	1165	3.782893	CGTTGGATTTACGACGTACTCTC	59.217	47.826	7.33	4.83	41.98	3.20
913	1166	3.751621	CGTTGGATTTACGACGTACTCT	58.248	45.455	7.33	0.00	41.98	3.24
923	1176	3.668656	GCAGTTTCAAGCGTTGGATTTAC	59.331	43.478	0.00	0.00	0.00	2.01
925	1178	2.362077	AGCAGTTTCAAGCGTTGGATTT	59.638	40.909	0.00	0.00	35.48	2.17
971	1226	1.757118	CTAATGACTGGCCTCTTCCGA	59.243	52.381	3.32	0.00	0.00	4.55
1245	1502	4.893601	GGAAGGTCTAGGCGGCGC	62.894	72.222	26.17	26.17	0.00	6.53
1370	1627	2.825836	CATGGAGGGTCTTGGCGC	60.826	66.667	0.00	0.00	0.00	6.53
1379	1636	0.180171	TGACGCAATACCATGGAGGG	59.820	55.000	21.47	15.03	43.89	4.30
1399	1656	3.003763	GGAGGACCAGCCGGAAGT	61.004	66.667	5.05	0.00	43.43	3.01
1419	1676	3.499737	GCACTGCCGACGATTGGG	61.500	66.667	0.00	0.00	0.00	4.12
1473	1730	0.110056	CAAACACATGGCGAGCACTC	60.110	55.000	0.00	0.00	0.00	3.51
1686	1943	2.923121	CCCTTGATACACACTCCATGG	58.077	52.381	4.97	4.97	0.00	3.66
1713	1970	0.392863	TCACATGGTGGCCAGAATCG	60.393	55.000	5.11	0.00	36.75	3.34
2013	2270	6.466812	TGAGACTTTCATGTCTTTATCAGCA	58.533	36.000	0.00	0.00	46.11	4.41
2028	2285	7.254727	GCATCCATTAGTGAAGATGAGACTTTC	60.255	40.741	8.14	0.00	38.72	2.62
2112	2369	7.550551	ACCATATTGTACATGACTGAGTTCTTG	59.449	37.037	0.00	0.00	0.00	3.02
2189	2446	4.740634	GCTTATCACGGACCATCTCATCAA	60.741	45.833	0.00	0.00	0.00	2.57
2472	2729	0.183731	CCCTACCAAGGCTGGAATCC	59.816	60.000	9.53	0.00	46.92	3.01
2942	3209	6.458232	AGAGTGCTTCAGATATTACGTTCT	57.542	37.500	0.00	0.00	0.00	3.01
3180	3463	7.994425	TGTTGCCAATCTAGAAATACTTGAA	57.006	32.000	0.00	0.00	34.50	2.69
3182	3465	9.643693	AATTTGTTGCCAATCTAGAAATACTTG	57.356	29.630	0.00	0.00	0.00	3.16
3328	3611	4.261489	GCCACAGAGCCATAAAATGATCAG	60.261	45.833	0.09	0.00	0.00	2.90
3330	3613	3.304257	CGCCACAGAGCCATAAAATGATC	60.304	47.826	0.00	0.00	0.00	2.92
3420	3705	0.868406	GCACCAGCACAACTACAGTC	59.132	55.000	0.00	0.00	41.58	3.51
3595	3880	9.703892	CTTATAAAGCTAGCACATGAGAGTAAT	57.296	33.333	18.83	0.00	0.00	1.89

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.