Multiple sequence alignment - TraesCS3D01G362100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G362100 chr3D 100.000 6907 0 0 1 6907 476549251 476556157 0.000000e+00 12755
1 TraesCS3D01G362100 chr3D 100.000 610 0 0 7201 7810 476556451 476557060 0.000000e+00 1127
2 TraesCS3D01G362100 chr3B 88.579 3117 158 99 1 3022 635216121 635219134 0.000000e+00 3602
3 TraesCS3D01G362100 chr3B 88.997 2472 99 68 3048 5422 635219116 635221511 0.000000e+00 2898
4 TraesCS3D01G362100 chr3B 93.825 664 26 10 6228 6888 635222641 635223292 0.000000e+00 985
5 TraesCS3D01G362100 chr3B 90.563 551 23 12 7269 7810 635223382 635223912 0.000000e+00 702
6 TraesCS3D01G362100 chr3B 84.646 508 16 16 5606 6085 635221998 635222471 4.300000e-122 449
7 TraesCS3D01G362100 chr3B 91.813 171 5 4 5427 5595 635221776 635221939 6.100000e-56 230
8 TraesCS3D01G362100 chr3A 86.782 1914 86 66 296 2145 620222479 620220669 0.000000e+00 1978
9 TraesCS3D01G362100 chr3A 88.248 902 35 28 3983 4866 620218801 620217953 0.000000e+00 1013
10 TraesCS3D01G362100 chr3A 85.733 750 46 24 4877 5607 620217904 620217197 0.000000e+00 736
11 TraesCS3D01G362100 chr3A 86.202 674 60 22 6226 6888 620216540 620215889 0.000000e+00 699
12 TraesCS3D01G362100 chr3A 97.727 308 4 3 2248 2553 620220622 620220316 1.930000e-145 527
13 TraesCS3D01G362100 chr3A 81.947 637 30 27 7201 7799 620215839 620215250 1.990000e-125 460
14 TraesCS3D01G362100 chr3A 86.717 399 26 17 3107 3489 620219829 620219442 1.210000e-112 418
15 TraesCS3D01G362100 chr3A 82.984 382 42 14 2651 3022 620220228 620219860 2.720000e-84 324
16 TraesCS3D01G362100 chr3A 92.718 206 8 3 5885 6085 620216938 620216735 2.760000e-74 291
17 TraesCS3D01G362100 chr3A 83.987 306 19 15 3549 3824 620219289 620218984 4.650000e-67 267
18 TraesCS3D01G362100 chr3A 86.614 127 9 4 5606 5730 620217145 620217025 4.920000e-27 134
19 TraesCS3D01G362100 chr3A 91.765 85 3 2 40 120 620222737 620222653 1.780000e-21 115
20 TraesCS3D01G362100 chr1D 91.266 458 40 0 4371 4828 374471505 374471048 6.650000e-175 625
21 TraesCS3D01G362100 chr1D 87.118 458 57 2 4369 4825 62599377 62598921 1.160000e-142 518
22 TraesCS3D01G362100 chr1D 86.598 291 39 0 2264 2554 62600778 62600488 9.780000e-84 322
23 TraesCS3D01G362100 chr1D 80.952 420 56 23 1130 1534 374474250 374473840 2.120000e-80 311
24 TraesCS3D01G362100 chr1D 97.458 118 3 0 2019 2136 374473468 374473351 1.330000e-47 202
25 TraesCS3D01G362100 chr1D 79.348 184 34 3 6243 6424 62597739 62597558 8.230000e-25 126
26 TraesCS3D01G362100 chr1A 91.048 458 41 0 4371 4828 474226183 474225726 3.100000e-173 619
27 TraesCS3D01G362100 chr1A 88.352 455 51 2 4369 4822 60737109 60737562 5.330000e-151 545
28 TraesCS3D01G362100 chr1A 86.897 290 38 0 2265 2554 60735708 60735997 7.560000e-85 326
29 TraesCS3D01G362100 chr1A 92.784 194 12 2 1342 1534 474228846 474228654 5.970000e-71 279
30 TraesCS3D01G362100 chr1A 87.047 193 25 0 1344 1536 60735301 60735493 1.320000e-52 219
31 TraesCS3D01G362100 chr1A 96.610 118 4 0 2019 2136 474228268 474228151 6.180000e-46 196
32 TraesCS3D01G362100 chr1A 85.484 186 26 1 6241 6425 474225627 474225442 8.000000e-45 193
33 TraesCS3D01G362100 chr1A 80.978 184 31 4 6243 6424 60738590 60738771 8.170000e-30 143
34 TraesCS3D01G362100 chr1A 84.034 119 16 2 1130 1245 474229052 474228934 2.300000e-20 111
35 TraesCS3D01G362100 chr1B 90.611 458 43 0 4371 4828 499469118 499468661 6.700000e-170 608
36 TraesCS3D01G362100 chr1B 87.991 458 53 2 4369 4825 99753568 99753112 2.480000e-149 540
37 TraesCS3D01G362100 chr1B 88.136 295 31 4 2264 2556 499470716 499470424 1.610000e-91 348
38 TraesCS3D01G362100 chr1B 87.285 291 37 0 2264 2554 99754996 99754706 4.520000e-87 333
39 TraesCS3D01G362100 chr1B 92.784 194 12 2 1342 1534 499471529 499471337 5.970000e-71 279
40 TraesCS3D01G362100 chr1B 97.458 118 3 0 2019 2136 499470945 499470828 1.330000e-47 202
41 TraesCS3D01G362100 chr1B 79.891 184 33 4 6243 6424 99752067 99751886 1.770000e-26 132
42 TraesCS3D01G362100 chr1B 83.077 130 18 3 1130 1255 499471751 499471622 1.780000e-21 115
43 TraesCS3D01G362100 chr4B 85.000 480 69 2 4361 4839 473569992 473569515 1.180000e-132 484
44 TraesCS3D01G362100 chr4B 87.197 289 37 0 2264 2552 124742024 124742312 5.840000e-86 329
45 TraesCS3D01G362100 chr4B 87.013 154 18 2 1344 1496 124741725 124741877 1.040000e-38 172
46 TraesCS3D01G362100 chr4B 88.983 118 13 0 2019 2136 473571692 473571575 6.320000e-31 147
47 TraesCS3D01G362100 chr4A 87.931 290 33 2 2264 2552 500901331 500901619 2.700000e-89 340
48 TraesCS3D01G362100 chr4A 89.119 193 19 2 1342 1533 197971116 197971307 1.010000e-58 239
49 TraesCS3D01G362100 chr4A 94.068 118 7 0 2019 2136 197979896 197980013 6.230000e-41 180
50 TraesCS3D01G362100 chr4A 85.714 154 20 2 1344 1496 500901032 500901184 2.260000e-35 161
51 TraesCS3D01G362100 chr4A 88.983 118 13 0 2019 2136 67894297 67894180 6.320000e-31 147
52 TraesCS3D01G362100 chr4D 87.241 290 35 2 2264 2552 88122316 88122604 5.840000e-86 329
53 TraesCS3D01G362100 chr4D 88.983 118 13 0 2019 2136 386437956 386437839 6.320000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G362100 chr3D 476549251 476557060 7809 False 6941.000000 12755 100.000000 1 7810 2 chr3D.!!$F1 7809
1 TraesCS3D01G362100 chr3B 635216121 635223912 7791 False 1477.666667 3602 89.737167 1 7810 6 chr3B.!!$F1 7809
2 TraesCS3D01G362100 chr3A 620215250 620222737 7487 True 580.166667 1978 87.618667 40 7799 12 chr3A.!!$R1 7759
3 TraesCS3D01G362100 chr1D 374471048 374474250 3202 True 379.333333 625 89.892000 1130 4828 3 chr1D.!!$R2 3698
4 TraesCS3D01G362100 chr1D 62597558 62600778 3220 True 322.000000 518 84.354667 2264 6424 3 chr1D.!!$R1 4160
5 TraesCS3D01G362100 chr1A 60735301 60738771 3470 False 308.250000 545 85.818500 1344 6424 4 chr1A.!!$F1 5080
6 TraesCS3D01G362100 chr1A 474225442 474229052 3610 True 279.600000 619 89.992000 1130 6425 5 chr1A.!!$R1 5295
7 TraesCS3D01G362100 chr1B 99751886 99754996 3110 True 335.000000 540 85.055667 2264 6424 3 chr1B.!!$R1 4160
8 TraesCS3D01G362100 chr1B 499468661 499471751 3090 True 310.400000 608 90.413200 1130 4828 5 chr1B.!!$R2 3698
9 TraesCS3D01G362100 chr4B 473569515 473571692 2177 True 315.500000 484 86.991500 2019 4839 2 chr4B.!!$R1 2820
10 TraesCS3D01G362100 chr4B 124741725 124742312 587 False 250.500000 329 87.105000 1344 2552 2 chr4B.!!$F1 1208
11 TraesCS3D01G362100 chr4A 500901032 500901619 587 False 250.500000 340 86.822500 1344 2552 2 chr4A.!!$F3 1208

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 221 0.252012 ACACACAGAGGGGAGAGAGG 60.252 60.0 0.00 0.0 0.0 3.69 F
442 494 0.468226 TCCGCTCTCTCTCTCTCTCC 59.532 60.0 0.00 0.0 0.0 3.71 F
523 579 0.616395 TCTGTCCCGCCATTACTCCA 60.616 55.0 0.00 0.0 0.0 3.86 F
1788 2198 0.319555 TGCCGAACGGAAAGTGAGAG 60.320 55.0 17.63 0.0 37.5 3.20 F
3098 4816 0.039764 TGAGTCCAGTCCAGTCCGAT 59.960 55.0 0.00 0.0 0.0 4.18 F
3824 5842 0.526662 GCACGCTGACCTACTACTGT 59.473 55.0 0.00 0.0 0.0 3.55 F
4223 6291 0.107703 TCTGCGTCCATCATTGACCC 60.108 55.0 0.00 0.0 0.0 4.46 F
5588 8783 0.179026 CTGCTATGGATGTGGCTGCT 60.179 55.0 0.00 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 2168 0.028770 CGTTCGGCAAGCAACTTGAA 59.971 50.000 11.38 0.00 43.42 2.69 R
1771 2181 0.038159 AGCTCTCACTTTCCGTTCGG 60.038 55.000 4.74 4.74 0.00 4.30 R
1808 2219 1.212935 GATTAAGGAAGGAGCAGCCCA 59.787 52.381 3.08 0.00 37.37 5.36 R
3409 5225 0.176910 TTGAACACCGCACTCAGACA 59.823 50.000 0.00 0.00 0.00 3.41 R
4191 6259 0.601311 ACGCAGAGACTTCAGTTGGC 60.601 55.000 0.00 0.00 0.00 4.52 R
5587 8782 0.319211 CGCCATGCCATTTGCCATAG 60.319 55.000 0.00 0.00 40.16 2.23 R
5875 9155 0.333652 TCCGGGGACTCATGACAGTA 59.666 55.000 0.00 0.00 0.00 2.74 R
7247 10669 0.038251 TTCACAATCACTCGCTCGCT 60.038 50.000 0.00 0.00 0.00 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.547712 TCTTCCTCCTTCCCTGTGGG 60.548 60.000 0.00 0.00 46.11 4.61
23 24 2.203549 CTTCCTCCTTCCCTGTGGGC 62.204 65.000 0.00 0.00 43.94 5.36
179 221 0.252012 ACACACAGAGGGGAGAGAGG 60.252 60.000 0.00 0.00 0.00 3.69
187 229 0.933700 AGGGGAGAGAGGGAGAGAAG 59.066 60.000 0.00 0.00 0.00 2.85
227 274 7.123355 AGAATAGACAGAATGGAAGAGAAGG 57.877 40.000 0.00 0.00 43.62 3.46
262 309 1.607612 GGCGAGAAAATCAGGGGGA 59.392 57.895 0.00 0.00 0.00 4.81
373 425 3.570638 CAATCTGCCTGCGCTCCG 61.571 66.667 9.73 0.00 35.36 4.63
442 494 0.468226 TCCGCTCTCTCTCTCTCTCC 59.532 60.000 0.00 0.00 0.00 3.71
469 525 1.874872 GCCTACGAGCTAGGAGTAGTG 59.125 57.143 5.25 4.52 44.88 2.74
523 579 0.616395 TCTGTCCCGCCATTACTCCA 60.616 55.000 0.00 0.00 0.00 3.86
690 746 2.574369 TCCTAGGCTCCTAGCTAGCTAG 59.426 54.545 35.39 35.39 43.35 3.42
802 876 2.645192 CCGGCCGGCCAAATCTTTT 61.645 57.895 42.78 0.00 35.37 2.27
806 880 0.887933 GCCGGCCAAATCTTTTCTGA 59.112 50.000 18.11 0.00 0.00 3.27
818 892 4.066578 TCTTTTCTGATCCTCCTCCTCA 57.933 45.455 0.00 0.00 0.00 3.86
826 900 1.527148 CCTCCTCCTCATCGCGAGA 60.527 63.158 16.66 11.33 45.45 4.04
842 927 2.597520 CGAGAAAAGGTTCGTCTCTCC 58.402 52.381 0.00 0.00 38.90 3.71
879 964 1.598130 GTGTTTCAGAGGCTGCCGT 60.598 57.895 13.96 1.28 0.00 5.68
880 965 1.148273 TGTTTCAGAGGCTGCCGTT 59.852 52.632 13.96 2.21 0.00 4.44
881 966 0.884704 TGTTTCAGAGGCTGCCGTTC 60.885 55.000 13.96 6.42 0.00 3.95
886 971 4.699522 GAGGCTGCCGTTCCCGTT 62.700 66.667 13.96 0.00 0.00 4.44
887 972 4.265056 AGGCTGCCGTTCCCGTTT 62.265 61.111 13.96 0.00 0.00 3.60
888 973 3.733960 GGCTGCCGTTCCCGTTTC 61.734 66.667 1.35 0.00 0.00 2.78
889 974 4.084888 GCTGCCGTTCCCGTTTCG 62.085 66.667 0.00 0.00 0.00 3.46
989 1079 1.287815 CTCCGTCCGTACACAGCAA 59.712 57.895 0.00 0.00 0.00 3.91
993 1095 1.218875 CGTCCGTACACAGCAAAGCA 61.219 55.000 0.00 0.00 0.00 3.91
999 1101 2.116736 TACACAGCAAAGCACAGCGC 62.117 55.000 0.00 0.00 42.91 5.92
1022 1124 2.261671 CGTGGTGAGAGAACGGGG 59.738 66.667 0.00 0.00 33.77 5.73
1029 1131 2.364448 AGAGAACGGGGGAGAGGC 60.364 66.667 0.00 0.00 0.00 4.70
1245 1356 2.267961 CGCCTCCAACCAGGTACC 59.732 66.667 2.73 2.73 39.02 3.34
1246 1357 2.589157 CGCCTCCAACCAGGTACCA 61.589 63.158 15.94 0.00 39.02 3.25
1247 1358 1.910580 CGCCTCCAACCAGGTACCAT 61.911 60.000 15.94 0.00 39.02 3.55
1257 1375 2.979678 ACCAGGTACCATGTCTGTCTTT 59.020 45.455 15.94 0.00 0.00 2.52
1540 1668 1.262640 ACGTCATCCAGGTACCCACC 61.263 60.000 8.74 0.00 46.19 4.61
1758 2168 2.619177 ACGCGTTAGATATGCAGTCTCT 59.381 45.455 5.58 4.47 38.77 3.10
1771 2181 2.604132 GCAGTCTCTTCAAGTTGCTTGC 60.604 50.000 0.00 0.00 40.84 4.01
1785 2195 2.612200 CTTGCCGAACGGAAAGTGA 58.388 52.632 21.73 0.00 44.19 3.41
1788 2198 0.319555 TGCCGAACGGAAAGTGAGAG 60.320 55.000 17.63 0.00 37.50 3.20
1792 2202 1.335964 CGAACGGAAAGTGAGAGCTGA 60.336 52.381 0.00 0.00 0.00 4.26
1831 2244 2.092158 GGCTGCTCCTTCCTTAATCCTT 60.092 50.000 0.00 0.00 0.00 3.36
1843 2256 6.323210 TCCTTAATCCTTCCCTTTTAGTCC 57.677 41.667 0.00 0.00 0.00 3.85
1865 2278 3.693578 CCAAAACCAAAACCACATTTGCT 59.306 39.130 0.00 0.00 38.64 3.91
1906 2334 3.111098 GCTTAATGATTGAAGCAAGGCG 58.889 45.455 11.71 0.00 45.99 5.52
1976 2404 2.752354 TGTGGTTGATTAATGGCGAAGG 59.248 45.455 0.00 0.00 0.00 3.46
1979 2407 4.097892 GTGGTTGATTAATGGCGAAGGAAT 59.902 41.667 0.00 0.00 0.00 3.01
1981 2409 4.338118 GGTTGATTAATGGCGAAGGAATGA 59.662 41.667 0.00 0.00 0.00 2.57
1982 2410 5.163561 GGTTGATTAATGGCGAAGGAATGAA 60.164 40.000 0.00 0.00 0.00 2.57
1983 2411 5.756195 TGATTAATGGCGAAGGAATGAAG 57.244 39.130 0.00 0.00 0.00 3.02
1984 2412 4.036734 TGATTAATGGCGAAGGAATGAAGC 59.963 41.667 0.00 0.00 0.00 3.86
2000 2428 9.384764 AGGAATGAAGCAAGAATTACTACTAAC 57.615 33.333 0.00 0.00 0.00 2.34
2001 2429 8.613482 GGAATGAAGCAAGAATTACTACTAACC 58.387 37.037 0.00 0.00 0.00 2.85
2005 2433 8.154856 TGAAGCAAGAATTACTACTAACCAAGT 58.845 33.333 0.00 0.00 42.62 3.16
2007 2435 8.919777 AGCAAGAATTACTACTAACCAAGTTT 57.080 30.769 0.00 0.00 39.80 2.66
2008 2436 9.350951 AGCAAGAATTACTACTAACCAAGTTTT 57.649 29.630 0.00 0.00 39.80 2.43
2148 2585 1.188219 GCCAGGTCAGTCAGTCCTCA 61.188 60.000 0.00 0.00 33.19 3.86
2152 2589 1.214062 GTCAGTCAGTCCTCAGCCG 59.786 63.158 0.00 0.00 0.00 5.52
2154 2591 3.386237 AGTCAGTCCTCAGCCGCC 61.386 66.667 0.00 0.00 0.00 6.13
2172 2652 1.026182 CCCCACACACACATCCATCG 61.026 60.000 0.00 0.00 0.00 3.84
2184 2664 2.028294 ACATCCATCGCTCTCATCATCC 60.028 50.000 0.00 0.00 0.00 3.51
2223 2703 2.740981 GTCCAGTTCAGTTGCTGAGATG 59.259 50.000 0.00 3.16 41.75 2.90
2224 2704 2.634453 TCCAGTTCAGTTGCTGAGATGA 59.366 45.455 11.64 1.98 41.75 2.92
2226 2706 2.415857 CAGTTCAGTTGCTGAGATGAGC 59.584 50.000 0.00 0.00 41.75 4.26
2229 2709 3.797451 TCAGTTGCTGAGATGAGCTAG 57.203 47.619 0.00 0.00 39.90 3.42
2241 2729 9.921637 GCTGAGATGAGCTAGTAGTAAATAAAT 57.078 33.333 0.00 0.00 35.95 1.40
2565 3327 0.400594 GTGTAAGCACCCTCAACCCT 59.599 55.000 0.00 0.00 39.61 4.34
2572 3377 0.615850 CACCCTCAACCCTTCTCTCC 59.384 60.000 0.00 0.00 0.00 3.71
2592 3765 9.520515 TCTCTCCTTTTTCACAGCTTATTTATT 57.479 29.630 0.00 0.00 0.00 1.40
2593 3766 9.565213 CTCTCCTTTTTCACAGCTTATTTATTG 57.435 33.333 0.00 0.00 0.00 1.90
2612 3792 9.651913 ATTTATTGATTTATTTGTTTGCTCGGT 57.348 25.926 0.00 0.00 0.00 4.69
2644 3824 6.607004 AAATTACTGCTAGTGGTACTCTGT 57.393 37.500 0.00 0.00 32.87 3.41
2649 3861 3.082548 TGCTAGTGGTACTCTGTCTGAC 58.917 50.000 0.00 0.00 32.87 3.51
2650 3862 2.096174 GCTAGTGGTACTCTGTCTGACG 59.904 54.545 2.98 0.00 32.87 4.35
2652 3864 2.860009 AGTGGTACTCTGTCTGACGAA 58.140 47.619 2.98 0.00 0.00 3.85
2653 3865 2.814919 AGTGGTACTCTGTCTGACGAAG 59.185 50.000 2.98 5.60 0.00 3.79
2654 3866 2.812591 GTGGTACTCTGTCTGACGAAGA 59.187 50.000 14.00 6.89 0.00 2.87
2744 4063 0.893270 CGCACTGGATTGGAAACCCA 60.893 55.000 0.00 0.00 36.91 4.51
2745 4064 0.603065 GCACTGGATTGGAAACCCAC 59.397 55.000 0.00 0.00 31.20 4.61
2746 4065 1.823250 GCACTGGATTGGAAACCCACT 60.823 52.381 0.00 0.00 31.20 4.00
2774 4106 1.455587 CATTCCAATGGTCCCCCGG 60.456 63.158 0.00 0.00 32.78 5.73
2811 4235 0.692476 TCCATGGTACTTGCAGCAGT 59.308 50.000 12.58 0.00 0.00 4.40
2821 4254 2.289072 ACTTGCAGCAGTACCACACTAG 60.289 50.000 0.00 0.00 34.98 2.57
2824 4257 1.406069 GCAGCAGTACCACACTAGCAT 60.406 52.381 0.00 0.00 34.98 3.79
2825 4258 2.274437 CAGCAGTACCACACTAGCATG 58.726 52.381 0.00 0.00 34.98 4.06
2827 4260 2.093973 AGCAGTACCACACTAGCATGAC 60.094 50.000 0.00 0.00 34.98 3.06
2828 4261 2.353704 GCAGTACCACACTAGCATGACA 60.354 50.000 0.00 0.00 34.98 3.58
2833 4266 2.897326 ACCACACTAGCATGACAGTACA 59.103 45.455 0.00 0.00 0.00 2.90
2841 4274 2.562738 AGCATGACAGTACACTGCTGTA 59.437 45.455 9.28 0.00 45.99 2.74
2915 4371 2.603008 CCCATCCATCCACCCCAC 59.397 66.667 0.00 0.00 0.00 4.61
2974 4692 6.096282 GCACTTAAAAACTTCCATATAGGCCA 59.904 38.462 5.01 0.00 37.29 5.36
2988 4706 2.440599 GCCATGGTGGTGGGAACT 59.559 61.111 14.67 0.00 40.46 3.01
2989 4707 1.688811 GCCATGGTGGTGGGAACTA 59.311 57.895 14.67 0.00 40.46 2.24
3006 4724 3.351794 ACTAGCCTCCTTTGGTTTAGC 57.648 47.619 0.00 0.00 0.00 3.09
3008 4726 2.980246 AGCCTCCTTTGGTTTAGCTT 57.020 45.000 0.00 0.00 0.00 3.74
3009 4727 4.534897 ACTAGCCTCCTTTGGTTTAGCTTA 59.465 41.667 0.00 0.00 0.00 3.09
3011 4729 2.423892 GCCTCCTTTGGTTTAGCTTAGC 59.576 50.000 0.00 0.00 0.00 3.09
3012 4730 3.874193 GCCTCCTTTGGTTTAGCTTAGCT 60.874 47.826 12.67 12.67 43.41 3.32
3013 4731 4.336280 CCTCCTTTGGTTTAGCTTAGCTT 58.664 43.478 13.44 0.00 40.44 3.74
3016 4734 4.941873 TCCTTTGGTTTAGCTTAGCTTAGC 59.058 41.667 16.83 16.83 40.44 3.09
3027 4745 3.983741 CTTAGCTTAGCTTAGCATCCGT 58.016 45.455 25.27 7.96 43.68 4.69
3028 4746 2.990066 AGCTTAGCTTAGCATCCGTT 57.010 45.000 25.27 1.78 43.68 4.44
3029 4747 3.268023 AGCTTAGCTTAGCATCCGTTT 57.732 42.857 25.27 1.03 43.68 3.60
3031 4749 2.033662 GCTTAGCTTAGCATCCGTTTCG 60.034 50.000 19.41 0.00 40.89 3.46
3033 4751 2.380084 AGCTTAGCATCCGTTTCGAA 57.620 45.000 7.07 0.00 0.00 3.71
3034 4752 2.695359 AGCTTAGCATCCGTTTCGAAA 58.305 42.857 6.47 6.47 0.00 3.46
3035 4753 3.071479 AGCTTAGCATCCGTTTCGAAAA 58.929 40.909 13.10 0.00 0.00 2.29
3036 4754 3.500680 AGCTTAGCATCCGTTTCGAAAAA 59.499 39.130 13.10 1.64 0.00 1.94
3076 4794 0.532862 TTAGCTAGCTTGCGGCCATC 60.533 55.000 24.88 0.00 43.05 3.51
3086 4804 2.981302 CGGCCATCAGTGAGTCCA 59.019 61.111 2.24 0.00 0.00 4.02
3087 4805 1.153489 CGGCCATCAGTGAGTCCAG 60.153 63.158 2.24 0.00 0.00 3.86
3089 4807 0.107945 GGCCATCAGTGAGTCCAGTC 60.108 60.000 0.00 0.00 0.00 3.51
3090 4808 0.107945 GCCATCAGTGAGTCCAGTCC 60.108 60.000 0.00 0.00 0.00 3.85
3092 4810 1.206610 CCATCAGTGAGTCCAGTCCAG 59.793 57.143 0.00 0.00 0.00 3.86
3093 4811 1.898472 CATCAGTGAGTCCAGTCCAGT 59.102 52.381 0.00 0.00 0.00 4.00
3094 4812 1.621992 TCAGTGAGTCCAGTCCAGTC 58.378 55.000 0.00 0.00 0.00 3.51
3095 4813 0.605589 CAGTGAGTCCAGTCCAGTCC 59.394 60.000 0.00 0.00 0.00 3.85
3097 4815 0.894184 GTGAGTCCAGTCCAGTCCGA 60.894 60.000 0.00 0.00 0.00 4.55
3098 4816 0.039764 TGAGTCCAGTCCAGTCCGAT 59.960 55.000 0.00 0.00 0.00 4.18
3100 4818 1.032657 AGTCCAGTCCAGTCCGATCG 61.033 60.000 8.51 8.51 0.00 3.69
3102 4820 0.748367 TCCAGTCCAGTCCGATCGAG 60.748 60.000 18.66 6.99 0.00 4.04
3104 4822 1.077357 AGTCCAGTCCGATCGAGCT 60.077 57.895 18.66 11.10 0.00 4.09
3105 4823 1.098712 AGTCCAGTCCGATCGAGCTC 61.099 60.000 18.66 2.73 0.00 4.09
3189 4927 7.393515 ACACACACATGATACAGTCTAGTCTAA 59.606 37.037 0.00 0.00 0.00 2.10
3190 4928 8.409371 CACACACATGATACAGTCTAGTCTAAT 58.591 37.037 0.00 0.00 0.00 1.73
3192 4930 8.845227 CACACATGATACAGTCTAGTCTAATCT 58.155 37.037 0.00 0.00 0.00 2.40
3222 4965 0.609681 AAAAGAATTGGGGCGCGGTA 60.610 50.000 8.83 0.00 0.00 4.02
3296 5053 1.521457 CCTCTGCCGCTGCGATTAA 60.521 57.895 25.45 5.32 41.78 1.40
3304 5061 5.029650 TGCCGCTGCGATTAATTAATTAG 57.970 39.130 25.45 11.36 41.78 1.73
3307 5064 6.370442 TGCCGCTGCGATTAATTAATTAGTAT 59.630 34.615 25.45 0.66 41.78 2.12
3352 5113 3.003480 GTGTTTCCTGGTAGCTAGCTTG 58.997 50.000 24.88 14.99 0.00 4.01
3397 5213 5.073827 GGGGGAGGAATAATTAGCTTCTTCT 59.926 44.000 0.00 0.00 30.61 2.85
3401 5217 7.941790 GGGAGGAATAATTAGCTTCTTCTTCAT 59.058 37.037 0.00 0.00 31.55 2.57
3402 5218 8.998377 GGAGGAATAATTAGCTTCTTCTTCATC 58.002 37.037 0.00 2.20 31.55 2.92
3403 5219 9.553064 GAGGAATAATTAGCTTCTTCTTCATCA 57.447 33.333 0.00 0.00 30.81 3.07
3404 5220 9.336171 AGGAATAATTAGCTTCTTCTTCATCAC 57.664 33.333 0.00 0.00 0.00 3.06
3405 5221 9.336171 GGAATAATTAGCTTCTTCTTCATCACT 57.664 33.333 0.00 0.00 0.00 3.41
3407 5223 9.896645 AATAATTAGCTTCTTCTTCATCACTGA 57.103 29.630 0.00 0.00 0.00 3.41
3408 5224 7.846644 AATTAGCTTCTTCTTCATCACTGAG 57.153 36.000 0.00 0.00 31.68 3.35
3409 5225 4.888326 AGCTTCTTCTTCATCACTGAGT 57.112 40.909 0.00 0.00 31.68 3.41
3410 5226 4.567971 AGCTTCTTCTTCATCACTGAGTG 58.432 43.478 6.18 6.18 31.68 3.51
3411 5227 4.040217 AGCTTCTTCTTCATCACTGAGTGT 59.960 41.667 12.93 0.00 34.79 3.55
3492 5308 7.134815 CGGAGATTTGAGCCATTTTTATAGTG 58.865 38.462 0.00 0.00 0.00 2.74
3493 5309 7.012327 CGGAGATTTGAGCCATTTTTATAGTGA 59.988 37.037 0.00 0.00 0.00 3.41
3498 5314 7.482654 TTGAGCCATTTTTATAGTGATCTCG 57.517 36.000 0.00 0.00 0.00 4.04
3500 5316 6.701841 TGAGCCATTTTTATAGTGATCTCGTC 59.298 38.462 0.00 0.00 0.00 4.20
3514 5340 5.005971 GTGATCTCGTCTATATCTCGTAGCC 59.994 48.000 0.00 0.00 0.00 3.93
3535 5361 2.056223 GGCGACCAGGGCACTACTA 61.056 63.158 0.00 0.00 0.00 1.82
3541 5367 3.383825 CGACCAGGGCACTACTATTAAGT 59.616 47.826 0.00 0.00 39.91 2.24
3544 5370 6.481434 ACCAGGGCACTACTATTAAGTAAG 57.519 41.667 0.00 0.00 37.75 2.34
3545 5371 5.962641 ACCAGGGCACTACTATTAAGTAAGT 59.037 40.000 0.00 0.00 37.75 2.24
3546 5372 7.128077 ACCAGGGCACTACTATTAAGTAAGTA 58.872 38.462 0.00 0.00 37.75 2.24
3547 5373 7.069208 ACCAGGGCACTACTATTAAGTAAGTAC 59.931 40.741 0.00 0.00 37.75 2.73
3603 5515 7.961325 AAAACGAAAATGCTTTGGTATTGAT 57.039 28.000 0.00 0.00 32.89 2.57
3723 5728 1.503818 GGGACGTGCGTGAATGTTGT 61.504 55.000 0.67 0.00 0.00 3.32
3774 5785 0.811219 TTCCGCTCATCTTGCCATCG 60.811 55.000 0.00 0.00 0.00 3.84
3824 5842 0.526662 GCACGCTGACCTACTACTGT 59.473 55.000 0.00 0.00 0.00 3.55
3829 5847 4.077822 ACGCTGACCTACTACTGTTACTT 58.922 43.478 0.00 0.00 0.00 2.24
3830 5848 4.522022 ACGCTGACCTACTACTGTTACTTT 59.478 41.667 0.00 0.00 0.00 2.66
3851 5882 8.329203 ACTTTAAGAAGTTGCATCTAAAGAGG 57.671 34.615 18.26 3.67 43.48 3.69
3854 5885 6.809630 AAGAAGTTGCATCTAAAGAGGAAC 57.190 37.500 0.00 1.73 0.00 3.62
3866 5897 1.633774 AGAGGAACATCTCGTGGTGT 58.366 50.000 0.00 0.00 38.71 4.16
3867 5898 1.546476 AGAGGAACATCTCGTGGTGTC 59.454 52.381 3.50 0.00 38.71 3.67
3868 5899 0.608640 AGGAACATCTCGTGGTGTCC 59.391 55.000 3.50 7.41 0.00 4.02
3871 5902 2.069273 GAACATCTCGTGGTGTCCTTG 58.931 52.381 3.50 0.00 0.00 3.61
3872 5903 1.048601 ACATCTCGTGGTGTCCTTGT 58.951 50.000 0.00 0.00 0.00 3.16
3873 5904 1.416401 ACATCTCGTGGTGTCCTTGTT 59.584 47.619 0.00 0.00 0.00 2.83
3874 5905 2.069273 CATCTCGTGGTGTCCTTGTTC 58.931 52.381 0.00 0.00 0.00 3.18
3875 5906 1.116308 TCTCGTGGTGTCCTTGTTCA 58.884 50.000 0.00 0.00 0.00 3.18
3963 5994 1.374758 GCAACTAGCAGCTCGTGGT 60.375 57.895 0.00 0.00 44.79 4.16
3965 5996 1.016130 CAACTAGCAGCTCGTGGTGG 61.016 60.000 17.33 2.41 41.57 4.61
3966 5997 1.185618 AACTAGCAGCTCGTGGTGGA 61.186 55.000 17.33 0.00 41.57 4.02
3968 5999 1.599606 CTAGCAGCTCGTGGTGGAGT 61.600 60.000 17.33 0.00 41.57 3.85
3970 6001 2.047844 CAGCTCGTGGTGGAGTGG 60.048 66.667 8.74 0.00 37.97 4.00
3971 6002 4.008933 AGCTCGTGGTGGAGTGGC 62.009 66.667 0.00 0.00 36.41 5.01
3973 6004 3.625897 CTCGTGGTGGAGTGGCCA 61.626 66.667 0.00 0.00 46.96 5.36
4191 6259 3.670627 GCCTTTCTTCCGTAGCATTTGTG 60.671 47.826 0.00 0.00 0.00 3.33
4214 6282 1.261480 ACTGAAGTCTCTGCGTCCAT 58.739 50.000 0.00 0.00 0.00 3.41
4215 6283 1.203523 ACTGAAGTCTCTGCGTCCATC 59.796 52.381 0.00 0.00 0.00 3.51
4216 6284 1.203287 CTGAAGTCTCTGCGTCCATCA 59.797 52.381 0.00 0.00 0.00 3.07
4218 6286 2.234661 TGAAGTCTCTGCGTCCATCATT 59.765 45.455 0.00 0.00 0.00 2.57
4219 6287 2.306341 AGTCTCTGCGTCCATCATTG 57.694 50.000 0.00 0.00 0.00 2.82
4220 6288 1.827344 AGTCTCTGCGTCCATCATTGA 59.173 47.619 0.00 0.00 0.00 2.57
4223 6291 0.107703 TCTGCGTCCATCATTGACCC 60.108 55.000 0.00 0.00 0.00 4.46
4224 6292 0.392863 CTGCGTCCATCATTGACCCA 60.393 55.000 0.00 0.00 0.00 4.51
4280 6352 8.517062 AATTTCCTACTTCTTCTTCCATGATG 57.483 34.615 0.00 0.00 0.00 3.07
4281 6353 6.874278 TTCCTACTTCTTCTTCCATGATGA 57.126 37.500 0.00 0.00 0.00 2.92
4285 6357 9.163894 TCCTACTTCTTCTTCCATGATGATTAT 57.836 33.333 0.00 0.00 0.00 1.28
4289 6361 9.690913 ACTTCTTCTTCCATGATGATTATTGAA 57.309 29.630 0.00 0.00 0.00 2.69
4358 6495 4.158209 TGGTGGTGATGCTAATGTTGATTG 59.842 41.667 0.00 0.00 0.00 2.67
4359 6496 4.107622 GTGGTGATGCTAATGTTGATTGC 58.892 43.478 0.00 0.00 0.00 3.56
4360 6497 3.762823 TGGTGATGCTAATGTTGATTGCA 59.237 39.130 0.00 0.00 38.05 4.08
4361 6498 4.403113 TGGTGATGCTAATGTTGATTGCAT 59.597 37.500 0.00 0.00 45.48 3.96
4362 6499 4.743151 GGTGATGCTAATGTTGATTGCATG 59.257 41.667 3.43 0.00 43.28 4.06
4366 6503 4.496360 TGCTAATGTTGATTGCATGTTGG 58.504 39.130 0.00 0.00 0.00 3.77
4834 7142 3.207547 CTACCGATCCGCATCCGCA 62.208 63.158 0.00 0.00 38.40 5.69
4860 7168 1.673920 CGTGAGCCTCCTCTACTCTTC 59.326 57.143 0.00 0.00 38.93 2.87
4864 7193 3.268334 TGAGCCTCCTCTACTCTTCTCTT 59.732 47.826 0.00 0.00 38.93 2.85
4897 7245 5.449725 GCATTTCTTTTGCATCTAGGAGGAC 60.450 44.000 0.00 0.00 39.90 3.85
4927 7282 3.077359 GCTGGCTTTGAGAAGAAGCTTA 58.923 45.455 0.00 0.00 46.64 3.09
4928 7283 3.120025 GCTGGCTTTGAGAAGAAGCTTAC 60.120 47.826 0.00 0.00 46.64 2.34
4929 7284 4.322567 CTGGCTTTGAGAAGAAGCTTACT 58.677 43.478 0.00 0.00 46.64 2.24
5088 7447 3.126001 TCATTGCCAATAGGATCGTCC 57.874 47.619 0.00 0.00 36.89 4.79
5209 8084 1.067071 GTAGCACCACCAGTCCAGTAC 60.067 57.143 0.00 0.00 0.00 2.73
5210 8085 1.003718 GCACCACCAGTCCAGTACC 60.004 63.158 0.00 0.00 0.00 3.34
5270 8191 1.227943 CGCCCGATTCATCCATGGT 60.228 57.895 12.58 0.00 0.00 3.55
5271 8192 1.230635 CGCCCGATTCATCCATGGTC 61.231 60.000 12.58 0.00 0.00 4.02
5274 8195 1.074405 CCCGATTCATCCATGGTCCAT 59.926 52.381 12.58 0.00 0.00 3.41
5278 8199 2.759839 TTCATCCATGGTCCATGCAT 57.240 45.000 24.42 14.32 40.20 3.96
5279 8200 1.989706 TCATCCATGGTCCATGCATG 58.010 50.000 24.72 24.72 40.30 4.06
5360 8281 3.209410 GCAATGGAATAGACAGTGGAGG 58.791 50.000 0.00 0.00 34.76 4.30
5361 8282 3.370953 GCAATGGAATAGACAGTGGAGGT 60.371 47.826 0.00 0.00 34.76 3.85
5362 8283 4.446371 CAATGGAATAGACAGTGGAGGTC 58.554 47.826 0.00 0.00 35.50 3.85
5363 8284 2.100197 TGGAATAGACAGTGGAGGTCG 58.900 52.381 0.00 0.00 40.20 4.79
5504 8699 0.944386 CATTAATCCGCCCCGACAAG 59.056 55.000 0.00 0.00 0.00 3.16
5539 8734 1.984570 CCCTCTCCTCCGTCTGCAA 60.985 63.158 0.00 0.00 0.00 4.08
5581 8776 1.068083 CCGTCGCTGCTATGGATGT 59.932 57.895 6.57 0.00 0.00 3.06
5582 8777 1.217585 CCGTCGCTGCTATGGATGTG 61.218 60.000 6.57 0.00 0.00 3.21
5583 8778 1.217585 CGTCGCTGCTATGGATGTGG 61.218 60.000 0.00 0.00 0.00 4.17
5584 8779 1.227645 TCGCTGCTATGGATGTGGC 60.228 57.895 0.00 0.00 0.00 5.01
5585 8780 1.227764 CGCTGCTATGGATGTGGCT 60.228 57.895 0.00 0.00 0.00 4.75
5586 8781 1.504647 CGCTGCTATGGATGTGGCTG 61.505 60.000 0.00 0.00 0.00 4.85
5587 8782 1.793134 GCTGCTATGGATGTGGCTGC 61.793 60.000 0.00 0.00 40.92 5.25
5588 8783 0.179026 CTGCTATGGATGTGGCTGCT 60.179 55.000 0.00 0.00 0.00 4.24
5589 8784 1.071228 CTGCTATGGATGTGGCTGCTA 59.929 52.381 0.00 0.00 0.00 3.49
5591 8786 2.082231 GCTATGGATGTGGCTGCTATG 58.918 52.381 0.00 0.00 0.00 2.23
5592 8787 2.708051 CTATGGATGTGGCTGCTATGG 58.292 52.381 0.00 0.00 0.00 2.74
5593 8788 0.538977 ATGGATGTGGCTGCTATGGC 60.539 55.000 0.00 0.00 39.26 4.40
5674 8926 4.162690 CGTAGGTGAGCCTGCCCC 62.163 72.222 0.00 0.00 46.47 5.80
5679 8931 2.044946 GTGAGCCTGCCCCGAATT 60.045 61.111 0.00 0.00 0.00 2.17
5680 8932 2.045045 TGAGCCTGCCCCGAATTG 60.045 61.111 0.00 0.00 0.00 2.32
5681 8933 3.521796 GAGCCTGCCCCGAATTGC 61.522 66.667 0.00 0.00 0.00 3.56
5682 8934 4.365111 AGCCTGCCCCGAATTGCA 62.365 61.111 0.00 0.00 35.86 4.08
5687 8939 1.001517 TGCCCCGAATTGCAGCTAA 60.002 52.632 0.00 0.00 32.77 3.09
5688 8940 0.395586 TGCCCCGAATTGCAGCTAAT 60.396 50.000 0.00 0.00 32.77 1.73
5748 9014 1.644786 GGAAGCATCCAAACCGTCCG 61.645 60.000 2.32 0.00 45.79 4.79
5749 9015 0.953960 GAAGCATCCAAACCGTCCGT 60.954 55.000 0.00 0.00 0.00 4.69
5750 9016 0.953960 AAGCATCCAAACCGTCCGTC 60.954 55.000 0.00 0.00 0.00 4.79
5751 9017 2.396157 GCATCCAAACCGTCCGTCC 61.396 63.158 0.00 0.00 0.00 4.79
5771 9037 1.612726 CCTCCCTGGCAGAGACTTTTG 60.613 57.143 17.94 0.00 32.86 2.44
5772 9038 0.250901 TCCCTGGCAGAGACTTTTGC 60.251 55.000 17.94 4.74 39.56 3.68
5773 9039 1.580845 CCCTGGCAGAGACTTTTGCG 61.581 60.000 17.94 0.00 41.17 4.85
5774 9040 1.208614 CTGGCAGAGACTTTTGCGC 59.791 57.895 9.42 0.00 41.17 6.09
5775 9041 2.174349 GGCAGAGACTTTTGCGCG 59.826 61.111 0.00 0.00 41.17 6.86
5843 9122 2.180204 CGTTGACATGGCGGGATCC 61.180 63.158 1.92 1.92 0.00 3.36
5864 9144 2.280628 GATCTCCTGTTACTTTGGGCG 58.719 52.381 0.00 0.00 0.00 6.13
5865 9145 1.053424 TCTCCTGTTACTTTGGGCGT 58.947 50.000 0.00 0.00 0.00 5.68
5879 9159 2.690326 GGCGTTGCCCATAGTACTG 58.310 57.895 5.39 0.00 44.06 2.74
5881 9161 1.287425 GCGTTGCCCATAGTACTGTC 58.713 55.000 5.39 0.00 0.00 3.51
5882 9162 1.404986 GCGTTGCCCATAGTACTGTCA 60.405 52.381 5.39 0.00 0.00 3.58
5981 9275 1.022451 GGCTTTTCGCACGGGTGATA 61.022 55.000 0.00 0.00 41.67 2.15
6035 9341 1.153823 CGACCGATGGGGATATCGC 60.154 63.158 11.21 11.21 46.36 4.58
6068 9374 1.677966 GGTCCCTTTCTTTCCCGCC 60.678 63.158 0.00 0.00 0.00 6.13
6085 9391 1.669604 GCCCTCGATTCCTTCCTTTC 58.330 55.000 0.00 0.00 0.00 2.62
6087 9393 1.559682 CCCTCGATTCCTTCCTTTCCA 59.440 52.381 0.00 0.00 0.00 3.53
6088 9394 2.026262 CCCTCGATTCCTTCCTTTCCAA 60.026 50.000 0.00 0.00 0.00 3.53
6089 9395 3.561313 CCCTCGATTCCTTCCTTTCCAAA 60.561 47.826 0.00 0.00 0.00 3.28
6100 9468 1.001815 CCTTTCCAAACGAACACGCAT 60.002 47.619 0.00 0.00 0.00 4.73
6108 9476 4.442733 CCAAACGAACACGCATAACATTTT 59.557 37.500 0.00 0.00 0.00 1.82
6140 9508 7.111455 GCTCCGTTTCAAAAACATTTATTTTGC 59.889 33.333 6.82 0.00 43.88 3.68
6141 9509 8.202745 TCCGTTTCAAAAACATTTATTTTGCT 57.797 26.923 6.82 0.00 43.88 3.91
6143 9511 7.585936 CCGTTTCAAAAACATTTATTTTGCTCC 59.414 33.333 6.82 0.00 43.88 4.70
6144 9512 8.119226 CGTTTCAAAAACATTTATTTTGCTCCA 58.881 29.630 6.82 0.00 43.88 3.86
6145 9513 9.949174 GTTTCAAAAACATTTATTTTGCTCCAT 57.051 25.926 6.82 0.00 43.88 3.41
6147 9515 8.674263 TCAAAAACATTTATTTTGCTCCATGT 57.326 26.923 6.82 0.00 43.88 3.21
6149 9517 8.557864 CAAAAACATTTATTTTGCTCCATGTCA 58.442 29.630 0.00 0.00 39.89 3.58
6150 9518 8.851541 AAAACATTTATTTTGCTCCATGTCAT 57.148 26.923 0.00 0.00 30.56 3.06
6156 9530 4.459390 TTTTGCTCCATGTCATTCCATG 57.541 40.909 0.00 0.00 41.52 3.66
6158 9532 1.341187 TGCTCCATGTCATTCCATGCA 60.341 47.619 0.00 0.00 40.72 3.96
6159 9533 1.961394 GCTCCATGTCATTCCATGCAT 59.039 47.619 0.00 0.00 40.72 3.96
6176 9550 1.068748 GCATTGCATCCATCGTCCATC 60.069 52.381 3.15 0.00 0.00 3.51
6180 9554 0.590195 GCATCCATCGTCCATCTTGC 59.410 55.000 0.00 0.00 0.00 4.01
6193 9567 3.455543 TCCATCTTGCTGTCCACATCATA 59.544 43.478 0.00 0.00 0.00 2.15
6194 9568 3.562973 CCATCTTGCTGTCCACATCATAC 59.437 47.826 0.00 0.00 0.00 2.39
6195 9569 4.449131 CATCTTGCTGTCCACATCATACT 58.551 43.478 0.00 0.00 0.00 2.12
6196 9570 4.128925 TCTTGCTGTCCACATCATACTC 57.871 45.455 0.00 0.00 0.00 2.59
6198 9572 3.531934 TGCTGTCCACATCATACTCTG 57.468 47.619 0.00 0.00 0.00 3.35
6199 9573 2.833943 TGCTGTCCACATCATACTCTGT 59.166 45.455 0.00 0.00 0.00 3.41
6223 9597 4.402056 TTTTTCTGACGAGTCTCCTTGT 57.598 40.909 4.78 0.00 38.06 3.16
6224 9598 3.371102 TTTCTGACGAGTCTCCTTGTG 57.629 47.619 4.78 0.00 35.34 3.33
6517 9904 1.601759 GTGACACTGCCATGCCACT 60.602 57.895 0.00 0.00 0.00 4.00
6533 9920 4.659172 CTGGCCGGTGGGAAGCAA 62.659 66.667 2.29 0.00 34.06 3.91
6562 9952 2.904131 GAGAAGCTTCCCCTCCCG 59.096 66.667 22.81 0.00 0.00 5.14
6625 10018 2.871453 AGGTTTTGGTCGCCTTGTAAT 58.129 42.857 0.00 0.00 0.00 1.89
6666 10064 2.027024 GCGTCCGTCAGTGTCACA 59.973 61.111 5.62 0.00 0.00 3.58
6667 10065 2.300787 GCGTCCGTCAGTGTCACAC 61.301 63.158 0.00 0.00 34.10 3.82
6668 10066 1.660575 CGTCCGTCAGTGTCACACC 60.661 63.158 3.66 0.00 34.49 4.16
6669 10067 1.660575 GTCCGTCAGTGTCACACCG 60.661 63.158 3.66 0.74 34.49 4.94
6670 10068 3.036084 CCGTCAGTGTCACACCGC 61.036 66.667 3.66 0.00 34.49 5.68
6735 10138 3.210012 TTGCTTCCCCCTGCCAGAC 62.210 63.158 0.00 0.00 0.00 3.51
6898 10318 9.996554 TGATGGTATTAACATACTTACATCCTG 57.003 33.333 0.00 0.00 34.39 3.86
6899 10319 9.998106 GATGGTATTAACATACTTACATCCTGT 57.002 33.333 0.00 0.00 36.28 4.00
6902 10322 9.924650 GGTATTAACATACTTACATCCTGTAGG 57.075 37.037 0.00 0.00 36.28 3.18
7247 10669 3.318886 TCGAAGTGTATTGTAAGCGCAA 58.681 40.909 11.47 0.00 0.00 4.85
7367 10793 0.376852 CATCGGTGTAAATGTGGCGG 59.623 55.000 0.00 0.00 0.00 6.13
7448 10878 2.507452 CCCAGCCAGCGATCATCA 59.493 61.111 0.00 0.00 0.00 3.07
7449 10879 1.153107 CCCAGCCAGCGATCATCAA 60.153 57.895 0.00 0.00 0.00 2.57
7450 10880 1.164662 CCCAGCCAGCGATCATCAAG 61.165 60.000 0.00 0.00 0.00 3.02
7451 10881 0.179065 CCAGCCAGCGATCATCAAGA 60.179 55.000 0.00 0.00 0.00 3.02
7452 10882 1.542767 CCAGCCAGCGATCATCAAGAT 60.543 52.381 0.00 0.00 40.48 2.40
7468 10898 0.830648 AGATCAAATCTTCCCGGCGA 59.169 50.000 9.30 0.00 35.76 5.54
7483 10913 1.810151 CGGCGAAAATTCTGAAAGGGA 59.190 47.619 0.00 0.00 0.00 4.20
7508 10941 1.153429 GATACGGTGGTGGTGGAGC 60.153 63.158 0.00 0.00 0.00 4.70
7561 10994 2.147958 GCACAACCGAGACCAAACATA 58.852 47.619 0.00 0.00 0.00 2.29
7646 11090 3.123484 GTGACAACGACGACGACG 58.877 61.111 17.60 17.60 42.66 5.12
7647 11091 1.368019 GTGACAACGACGACGACGA 60.368 57.895 25.15 0.25 42.66 4.20
7648 11092 1.368019 TGACAACGACGACGACGAC 60.368 57.895 25.15 7.02 42.66 4.34
7776 11239 2.498885 GACCCCTATTGTGGTACGAACT 59.501 50.000 0.00 0.00 34.20 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.088923 CCACAGGGAAGGAGGAAGA 57.911 57.895 0.00 0.00 35.59 2.87
22 23 2.972505 CGGTCACCACACCACAGC 60.973 66.667 0.00 0.00 36.01 4.40
23 24 2.280797 CCGGTCACCACACCACAG 60.281 66.667 0.00 0.00 36.01 3.66
98 103 2.041216 GTGGGTGGGAGTGGTAAATCTT 59.959 50.000 0.00 0.00 0.00 2.40
152 175 0.605589 CCCTCTGTGTGTCTCTGTCC 59.394 60.000 0.00 0.00 0.00 4.02
227 274 1.243342 GCCCCCTTTTGCATTTTGCC 61.243 55.000 0.00 0.00 44.23 4.52
244 291 0.034477 TTCCCCCTGATTTTCTCGCC 60.034 55.000 0.00 0.00 0.00 5.54
262 309 1.478916 CGTTTCCAACACCCCACTTTT 59.521 47.619 0.00 0.00 0.00 2.27
302 349 6.565999 GCTTTATAACAACAACGAACAGCTCT 60.566 38.462 0.00 0.00 0.00 4.09
373 425 1.406860 GGGGAGAGTGATGAGGGAGC 61.407 65.000 0.00 0.00 0.00 4.70
422 474 1.541233 GGAGAGAGAGAGAGAGCGGAG 60.541 61.905 0.00 0.00 0.00 4.63
425 477 1.299541 GTGGAGAGAGAGAGAGAGCG 58.700 60.000 0.00 0.00 0.00 5.03
442 494 0.039978 CTAGCTCGTAGGCGATGGTG 60.040 60.000 0.00 0.00 46.80 4.17
469 525 0.745845 TCACTCGTAGGTCGTAGCCC 60.746 60.000 0.00 0.00 40.80 5.19
476 532 2.291190 GGCTATCACTCACTCGTAGGTC 59.709 54.545 0.00 0.00 0.00 3.85
477 533 2.299521 GGCTATCACTCACTCGTAGGT 58.700 52.381 0.00 0.00 0.00 3.08
478 534 1.609555 GGGCTATCACTCACTCGTAGG 59.390 57.143 0.00 0.00 0.00 3.18
479 535 1.264557 CGGGCTATCACTCACTCGTAG 59.735 57.143 0.00 0.00 0.00 3.51
480 536 1.306148 CGGGCTATCACTCACTCGTA 58.694 55.000 0.00 0.00 0.00 3.43
481 537 2.005960 GCGGGCTATCACTCACTCGT 62.006 60.000 0.00 0.00 0.00 4.18
482 538 1.299468 GCGGGCTATCACTCACTCG 60.299 63.158 0.00 0.00 0.00 4.18
599 655 1.410882 AGCGGAAGGATTACTCTCTGC 59.589 52.381 4.58 4.58 38.13 4.26
600 656 2.955660 AGAGCGGAAGGATTACTCTCTG 59.044 50.000 0.00 0.00 30.00 3.35
601 657 2.955660 CAGAGCGGAAGGATTACTCTCT 59.044 50.000 0.00 0.00 32.59 3.10
602 658 2.544903 GCAGAGCGGAAGGATTACTCTC 60.545 54.545 0.00 0.00 32.59 3.20
794 859 5.490357 TGAGGAGGAGGATCAGAAAAGATTT 59.510 40.000 0.00 0.00 36.25 2.17
802 876 1.821272 GCGATGAGGAGGAGGATCAGA 60.821 57.143 0.00 0.00 36.25 3.27
806 880 0.893270 CTCGCGATGAGGAGGAGGAT 60.893 60.000 10.36 0.00 41.29 3.24
818 892 1.067776 AGACGAACCTTTTCTCGCGAT 60.068 47.619 10.36 0.00 38.64 4.58
826 900 3.502356 AGAGAGGAGAGACGAACCTTTT 58.498 45.455 0.00 0.00 33.89 2.27
879 964 5.400703 GCCAATATAAAAACGAAACGGGAA 58.599 37.500 0.00 0.00 0.00 3.97
880 965 4.142425 GGCCAATATAAAAACGAAACGGGA 60.142 41.667 0.00 0.00 0.00 5.14
881 966 4.106909 GGCCAATATAAAAACGAAACGGG 58.893 43.478 0.00 0.00 0.00 5.28
884 969 5.963586 CGAGAGGCCAATATAAAAACGAAAC 59.036 40.000 5.01 0.00 0.00 2.78
885 970 5.448089 GCGAGAGGCCAATATAAAAACGAAA 60.448 40.000 5.01 0.00 34.80 3.46
886 971 4.034742 GCGAGAGGCCAATATAAAAACGAA 59.965 41.667 5.01 0.00 34.80 3.85
887 972 3.558418 GCGAGAGGCCAATATAAAAACGA 59.442 43.478 5.01 0.00 34.80 3.85
888 973 3.603857 CGCGAGAGGCCAATATAAAAACG 60.604 47.826 5.01 0.00 38.94 3.60
889 974 3.848554 GCGCGAGAGGCCAATATAAAAAC 60.849 47.826 12.10 0.00 38.94 2.43
999 1101 3.573772 TTCTCTCACCACGCGGCTG 62.574 63.158 12.47 0.00 34.57 4.85
1022 1124 2.818132 CACCATCCTCGCCTCTCC 59.182 66.667 0.00 0.00 0.00 3.71
1245 1356 3.306434 CGATGCTCAGAAAGACAGACATG 59.694 47.826 0.00 0.00 0.00 3.21
1246 1357 3.194329 TCGATGCTCAGAAAGACAGACAT 59.806 43.478 0.00 0.00 0.00 3.06
1247 1358 2.558359 TCGATGCTCAGAAAGACAGACA 59.442 45.455 0.00 0.00 0.00 3.41
1257 1375 0.319297 CATGGCGATCGATGCTCAGA 60.319 55.000 21.57 0.00 0.00 3.27
1540 1668 4.767892 AGGGGCAGGGGAGAAGGG 62.768 72.222 0.00 0.00 0.00 3.95
1543 1671 2.614013 GGAAGGGGCAGGGGAGAA 60.614 66.667 0.00 0.00 0.00 2.87
1544 1672 3.626596 AGGAAGGGGCAGGGGAGA 61.627 66.667 0.00 0.00 0.00 3.71
1663 2062 1.603236 TATTTTTGCAGCCAGGGCCG 61.603 55.000 6.70 0.00 43.17 6.13
1664 2063 0.108186 GTATTTTTGCAGCCAGGGCC 60.108 55.000 6.70 0.00 43.17 5.80
1707 2106 8.119845 GCAGGGCCGTTTTTAATTATTATTTTG 58.880 33.333 0.00 0.00 0.00 2.44
1712 2111 6.153000 TGAAGCAGGGCCGTTTTTAATTATTA 59.847 34.615 0.00 0.00 0.00 0.98
1714 2113 4.464597 TGAAGCAGGGCCGTTTTTAATTAT 59.535 37.500 0.00 0.00 0.00 1.28
1758 2168 0.028770 CGTTCGGCAAGCAACTTGAA 59.971 50.000 11.38 0.00 43.42 2.69
1771 2181 0.038159 AGCTCTCACTTTCCGTTCGG 60.038 55.000 4.74 4.74 0.00 4.30
1788 2198 4.787999 GCATTTGCAGCTCTCAGC 57.212 55.556 0.00 0.00 42.84 4.26
1808 2219 1.212935 GATTAAGGAAGGAGCAGCCCA 59.787 52.381 3.08 0.00 37.37 5.36
1813 2224 2.509964 GGGAAGGATTAAGGAAGGAGCA 59.490 50.000 0.00 0.00 0.00 4.26
1815 2226 5.458451 AAAGGGAAGGATTAAGGAAGGAG 57.542 43.478 0.00 0.00 0.00 3.69
1831 2244 3.975479 TGGTTTTGGGACTAAAAGGGA 57.025 42.857 0.00 0.00 30.79 4.20
1843 2256 3.693578 AGCAAATGTGGTTTTGGTTTTGG 59.306 39.130 0.00 0.00 42.85 3.28
1865 2278 5.387113 AGCATGGTGATTATTACTTGGGA 57.613 39.130 0.00 0.00 0.00 4.37
1923 2351 7.344134 ACTACTCACTAGTACCACATCATGTA 58.656 38.462 0.00 0.00 37.15 2.29
1932 2360 7.821359 CACAGTTACTACTACTCACTAGTACCA 59.179 40.741 0.00 0.00 36.95 3.25
1936 2364 6.777782 ACCACAGTTACTACTACTCACTAGT 58.222 40.000 0.00 0.00 39.24 2.57
1937 2365 7.389884 TCAACCACAGTTACTACTACTCACTAG 59.610 40.741 0.00 0.00 33.27 2.57
1938 2366 7.226441 TCAACCACAGTTACTACTACTCACTA 58.774 38.462 0.00 0.00 33.27 2.74
1939 2367 6.066690 TCAACCACAGTTACTACTACTCACT 58.933 40.000 0.00 0.00 33.27 3.41
1976 2404 9.162764 TGGTTAGTAGTAATTCTTGCTTCATTC 57.837 33.333 0.00 0.00 0.00 2.67
1979 2407 8.154856 ACTTGGTTAGTAGTAATTCTTGCTTCA 58.845 33.333 0.00 0.00 34.56 3.02
1981 2409 8.919777 AACTTGGTTAGTAGTAATTCTTGCTT 57.080 30.769 0.00 0.00 35.54 3.91
1982 2410 8.919777 AAACTTGGTTAGTAGTAATTCTTGCT 57.080 30.769 0.00 0.00 35.54 3.91
1983 2411 9.394477 CAAAACTTGGTTAGTAGTAATTCTTGC 57.606 33.333 0.00 0.00 35.54 4.01
2000 2428 4.362279 CACTGGTCAACATCAAAACTTGG 58.638 43.478 0.00 0.00 0.00 3.61
2001 2429 4.142182 ACCACTGGTCAACATCAAAACTTG 60.142 41.667 0.00 0.00 0.00 3.16
2005 2433 3.066064 CGAACCACTGGTCAACATCAAAA 59.934 43.478 0.00 0.00 33.12 2.44
2007 2435 2.158885 TCGAACCACTGGTCAACATCAA 60.159 45.455 0.00 0.00 33.12 2.57
2008 2436 1.414550 TCGAACCACTGGTCAACATCA 59.585 47.619 0.00 0.00 33.12 3.07
2152 2589 1.304381 ATGGATGTGTGTGTGGGGC 60.304 57.895 0.00 0.00 0.00 5.80
2154 2591 1.647545 GCGATGGATGTGTGTGTGGG 61.648 60.000 0.00 0.00 0.00 4.61
2172 2652 3.761752 GGTAGGAGTAGGATGATGAGAGC 59.238 52.174 0.00 0.00 0.00 4.09
2184 2664 2.492484 GGACACACAGTGGTAGGAGTAG 59.508 54.545 5.31 0.00 37.94 2.57
2254 2742 8.118976 TGTAGTAGATGTTACTGTAAGCAAGT 57.881 34.615 0.00 0.00 37.60 3.16
2255 2743 9.239002 GATGTAGTAGATGTTACTGTAAGCAAG 57.761 37.037 0.00 0.00 37.60 4.01
2256 2744 8.745590 TGATGTAGTAGATGTTACTGTAAGCAA 58.254 33.333 0.00 0.00 37.60 3.91
2258 2746 9.021863 GTTGATGTAGTAGATGTTACTGTAAGC 57.978 37.037 0.00 0.00 37.60 3.09
2565 3327 7.823745 AAATAAGCTGTGAAAAAGGAGAGAA 57.176 32.000 0.00 0.00 0.00 2.87
2592 3765 7.209471 ACTTACCGAGCAAACAAATAAATCA 57.791 32.000 0.00 0.00 0.00 2.57
2593 3766 9.274065 CTTACTTACCGAGCAAACAAATAAATC 57.726 33.333 0.00 0.00 0.00 2.17
2596 3769 7.733402 ACTTACTTACCGAGCAAACAAATAA 57.267 32.000 0.00 0.00 0.00 1.40
2610 3790 9.310716 CCACTAGCAGTAATTTACTTACTTACC 57.689 37.037 6.34 0.00 46.35 2.85
2611 3791 9.866798 ACCACTAGCAGTAATTTACTTACTTAC 57.133 33.333 6.34 0.00 46.35 2.34
2613 3793 9.866798 GTACCACTAGCAGTAATTTACTTACTT 57.133 33.333 6.34 0.00 46.35 2.24
2644 3824 4.021894 CCCTTCTTCTTCTTCTTCGTCAGA 60.022 45.833 0.00 0.00 0.00 3.27
2649 3861 1.996191 CGCCCTTCTTCTTCTTCTTCG 59.004 52.381 0.00 0.00 0.00 3.79
2650 3862 2.289756 ACCGCCCTTCTTCTTCTTCTTC 60.290 50.000 0.00 0.00 0.00 2.87
2652 3864 1.002544 CACCGCCCTTCTTCTTCTTCT 59.997 52.381 0.00 0.00 0.00 2.85
2653 3865 1.002087 TCACCGCCCTTCTTCTTCTTC 59.998 52.381 0.00 0.00 0.00 2.87
2654 3866 1.002544 CTCACCGCCCTTCTTCTTCTT 59.997 52.381 0.00 0.00 0.00 2.52
2694 4008 0.962356 CCGATCCACAGGCAAAAGCT 60.962 55.000 0.00 0.00 0.00 3.74
2695 4009 1.508088 CCGATCCACAGGCAAAAGC 59.492 57.895 0.00 0.00 0.00 3.51
2696 4010 0.322456 TCCCGATCCACAGGCAAAAG 60.322 55.000 0.00 0.00 0.00 2.27
2725 4044 0.893270 TGGGTTTCCAATCCAGTGCG 60.893 55.000 0.00 0.00 40.73 5.34
2774 4106 4.506255 CCGGAATGGGGTGAGGGC 62.506 72.222 0.00 0.00 0.00 5.19
2778 4110 1.618143 ATGGACCGGAATGGGGTGA 60.618 57.895 9.46 0.00 44.64 4.02
2785 4117 1.408266 GCAAGTACCATGGACCGGAAT 60.408 52.381 21.47 0.00 0.00 3.01
2787 4120 1.195442 TGCAAGTACCATGGACCGGA 61.195 55.000 21.47 5.25 0.00 5.14
2811 4235 4.082408 GTGTACTGTCATGCTAGTGTGGTA 60.082 45.833 10.74 0.00 0.00 3.25
2821 4254 1.800805 ACAGCAGTGTACTGTCATGC 58.199 50.000 13.08 0.04 45.06 4.06
2833 4266 6.346477 TCAAGATTAACTCAGTACAGCAGT 57.654 37.500 0.00 0.00 0.00 4.40
2974 4692 0.550147 AGGCTAGTTCCCACCACCAT 60.550 55.000 0.00 0.00 0.00 3.55
2988 4706 4.625564 GCTAAGCTAAACCAAAGGAGGCTA 60.626 45.833 0.00 0.00 0.00 3.93
2989 4707 2.980246 AAGCTAAACCAAAGGAGGCT 57.020 45.000 0.00 0.00 0.00 4.58
3006 4724 3.983741 ACGGATGCTAAGCTAAGCTAAG 58.016 45.455 0.00 0.00 43.19 2.18
3008 4726 4.369182 GAAACGGATGCTAAGCTAAGCTA 58.631 43.478 0.00 0.00 43.19 3.32
3009 4727 2.990066 AACGGATGCTAAGCTAAGCT 57.010 45.000 0.00 0.00 43.19 3.74
3011 4729 3.444916 TCGAAACGGATGCTAAGCTAAG 58.555 45.455 0.00 0.00 0.00 2.18
3012 4730 3.513680 TCGAAACGGATGCTAAGCTAA 57.486 42.857 0.00 0.00 0.00 3.09
3013 4731 3.513680 TTCGAAACGGATGCTAAGCTA 57.486 42.857 0.00 0.00 0.00 3.32
3076 4794 0.605589 GGACTGGACTGGACTCACTG 59.394 60.000 0.00 0.00 0.00 3.66
3086 4804 1.077357 AGCTCGATCGGACTGGACT 60.077 57.895 16.41 0.00 0.00 3.85
3087 4805 1.357334 GAGCTCGATCGGACTGGAC 59.643 63.158 16.41 0.00 0.00 4.02
3089 4807 2.329690 CGAGCTCGATCGGACTGG 59.670 66.667 32.06 10.29 43.02 4.00
3102 4820 3.857854 CACATGAGCGCACCGAGC 61.858 66.667 11.47 0.00 40.87 5.03
3189 4927 5.133491 CCAATTCTTTTCCCCTCCTCTAGAT 59.867 44.000 0.00 0.00 0.00 1.98
3190 4928 4.475016 CCAATTCTTTTCCCCTCCTCTAGA 59.525 45.833 0.00 0.00 0.00 2.43
3192 4930 3.527665 CCCAATTCTTTTCCCCTCCTCTA 59.472 47.826 0.00 0.00 0.00 2.43
3193 4931 2.313041 CCCAATTCTTTTCCCCTCCTCT 59.687 50.000 0.00 0.00 0.00 3.69
3194 4932 2.624293 CCCCAATTCTTTTCCCCTCCTC 60.624 54.545 0.00 0.00 0.00 3.71
3222 4965 2.039084 GGTGGCCGGAGATCTGAAATAT 59.961 50.000 5.05 0.00 0.00 1.28
3307 5064 8.252417 CACCAATGATCCAATCAACTTGATTAA 58.748 33.333 15.25 8.44 44.60 1.40
3311 5068 5.078949 ACACCAATGATCCAATCAACTTGA 58.921 37.500 0.00 0.00 43.50 3.02
3312 5069 5.395682 ACACCAATGATCCAATCAACTTG 57.604 39.130 0.00 0.00 43.50 3.16
3315 5072 5.047092 AGGAAACACCAATGATCCAATCAAC 60.047 40.000 0.00 0.00 41.27 3.18
3397 5213 3.553715 GCACTCAGACACTCAGTGATGAA 60.554 47.826 13.14 0.26 40.07 2.57
3401 5217 0.312102 CGCACTCAGACACTCAGTGA 59.688 55.000 13.14 0.00 40.07 3.41
3402 5218 0.665670 CCGCACTCAGACACTCAGTG 60.666 60.000 2.22 2.22 40.53 3.66
3403 5219 1.109920 ACCGCACTCAGACACTCAGT 61.110 55.000 0.00 0.00 0.00 3.41
3404 5220 0.665670 CACCGCACTCAGACACTCAG 60.666 60.000 0.00 0.00 0.00 3.35
3405 5221 1.363807 CACCGCACTCAGACACTCA 59.636 57.895 0.00 0.00 0.00 3.41
3406 5222 0.249489 AACACCGCACTCAGACACTC 60.249 55.000 0.00 0.00 0.00 3.51
3407 5223 0.249489 GAACACCGCACTCAGACACT 60.249 55.000 0.00 0.00 0.00 3.55
3408 5224 0.529773 TGAACACCGCACTCAGACAC 60.530 55.000 0.00 0.00 0.00 3.67
3409 5225 0.176910 TTGAACACCGCACTCAGACA 59.823 50.000 0.00 0.00 0.00 3.41
3410 5226 1.003866 GTTTGAACACCGCACTCAGAC 60.004 52.381 0.00 0.00 0.00 3.51
3411 5227 1.295792 GTTTGAACACCGCACTCAGA 58.704 50.000 0.00 0.00 0.00 3.27
3461 5277 1.152881 GCTCAAATCTCCGGCCCAT 60.153 57.895 0.00 0.00 0.00 4.00
3492 5308 5.353938 AGGCTACGAGATATAGACGAGATC 58.646 45.833 0.00 0.00 32.44 2.75
3493 5309 5.347620 AGGCTACGAGATATAGACGAGAT 57.652 43.478 0.00 0.00 32.44 2.75
3498 5314 2.352342 GCCGAGGCTACGAGATATAGAC 59.648 54.545 6.90 0.00 38.26 2.59
3500 5316 1.328069 CGCCGAGGCTACGAGATATAG 59.672 57.143 12.70 0.00 39.32 1.31
3603 5515 3.435026 CCAGTCCTTTTCTTTCACTCCCA 60.435 47.826 0.00 0.00 0.00 4.37
3728 5733 2.958355 TCATCACCAGCAGATGACGATA 59.042 45.455 2.00 0.00 44.98 2.92
3774 5785 5.488341 TCCACTAGGCTAAAACATCAAGAC 58.512 41.667 0.00 0.00 33.74 3.01
3829 5847 7.936847 TGTTCCTCTTTAGATGCAACTTCTTAA 59.063 33.333 0.30 0.00 0.00 1.85
3830 5848 7.450074 TGTTCCTCTTTAGATGCAACTTCTTA 58.550 34.615 0.30 0.00 0.00 2.10
3851 5882 2.069273 CAAGGACACCACGAGATGTTC 58.931 52.381 0.00 0.00 0.00 3.18
3854 5885 2.069273 GAACAAGGACACCACGAGATG 58.931 52.381 0.00 0.00 0.00 2.90
3866 5897 1.547675 GCCATCCAAGGTGAACAAGGA 60.548 52.381 0.00 0.00 0.00 3.36
3867 5898 0.890683 GCCATCCAAGGTGAACAAGG 59.109 55.000 0.00 0.00 0.00 3.61
3868 5899 1.619654 TGCCATCCAAGGTGAACAAG 58.380 50.000 0.00 0.00 0.00 3.16
3871 5902 2.094026 GGAAATGCCATCCAAGGTGAAC 60.094 50.000 0.00 0.00 36.92 3.18
3872 5903 2.178580 GGAAATGCCATCCAAGGTGAA 58.821 47.619 0.00 0.00 36.92 3.18
3873 5904 1.076841 TGGAAATGCCATCCAAGGTGA 59.923 47.619 0.12 0.00 43.84 4.02
3874 5905 1.559368 TGGAAATGCCATCCAAGGTG 58.441 50.000 0.12 0.00 43.84 4.00
3954 5985 4.008933 GCCACTCCACCACGAGCT 62.009 66.667 0.00 0.00 32.79 4.09
3956 5987 3.625897 TGGCCACTCCACCACGAG 61.626 66.667 0.00 0.00 40.72 4.18
3976 6007 9.239551 TCCGTTGCAGATTATATATACAGTACT 57.760 33.333 0.00 0.00 0.00 2.73
3977 6008 9.286946 GTCCGTTGCAGATTATATATACAGTAC 57.713 37.037 0.00 0.00 0.00 2.73
3979 6010 8.123639 AGTCCGTTGCAGATTATATATACAGT 57.876 34.615 0.00 0.00 0.00 3.55
3980 6011 8.988064 AAGTCCGTTGCAGATTATATATACAG 57.012 34.615 0.00 0.00 0.00 2.74
4149 6216 3.462021 GCTTCTTCCTAATCACGCAGAT 58.538 45.455 0.00 0.00 39.09 2.90
4150 6217 2.418746 GGCTTCTTCCTAATCACGCAGA 60.419 50.000 0.00 0.00 0.00 4.26
4191 6259 0.601311 ACGCAGAGACTTCAGTTGGC 60.601 55.000 0.00 0.00 0.00 4.52
4214 6282 2.353903 GCACATGCATTTGGGTCAATGA 60.354 45.455 14.43 0.00 41.59 2.57
4215 6283 2.004017 GCACATGCATTTGGGTCAATG 58.996 47.619 14.43 0.00 41.59 2.82
4216 6284 2.389962 GCACATGCATTTGGGTCAAT 57.610 45.000 14.43 0.00 41.59 2.57
4280 6352 5.700722 TGGCAGAGCATCATTCAATAATC 57.299 39.130 0.00 0.00 37.82 1.75
4281 6353 6.665992 AATGGCAGAGCATCATTCAATAAT 57.334 33.333 0.00 0.00 37.82 1.28
4285 6357 3.181494 CGAAATGGCAGAGCATCATTCAA 60.181 43.478 0.00 0.00 37.82 2.69
4287 6359 2.357009 ACGAAATGGCAGAGCATCATTC 59.643 45.455 0.00 0.00 37.82 2.67
4289 6361 2.048444 ACGAAATGGCAGAGCATCAT 57.952 45.000 0.00 0.00 37.82 2.45
4293 6365 7.066404 TGTTTATATAAACGAAATGGCAGAGCA 59.934 33.333 25.76 7.34 46.38 4.26
4358 6495 0.966875 TCCCTGCACATCCAACATGC 60.967 55.000 0.00 0.00 39.88 4.06
4359 6496 1.100510 CTCCCTGCACATCCAACATG 58.899 55.000 0.00 0.00 0.00 3.21
4360 6497 0.994247 TCTCCCTGCACATCCAACAT 59.006 50.000 0.00 0.00 0.00 2.71
4361 6498 0.994247 ATCTCCCTGCACATCCAACA 59.006 50.000 0.00 0.00 0.00 3.33
4362 6499 1.065199 TGATCTCCCTGCACATCCAAC 60.065 52.381 0.00 0.00 0.00 3.77
4366 6503 1.236628 GCATGATCTCCCTGCACATC 58.763 55.000 0.00 0.00 35.96 3.06
4843 7151 3.577805 AGAGAAGAGTAGAGGAGGCTC 57.422 52.381 5.78 5.78 0.00 4.70
4879 7227 3.634397 TGGTCCTCCTAGATGCAAAAG 57.366 47.619 0.00 0.00 34.23 2.27
4889 7237 2.388735 CAGCACAGTATGGTCCTCCTA 58.611 52.381 0.00 0.00 43.62 2.94
4897 7245 1.741706 CTCAAAGCCAGCACAGTATGG 59.258 52.381 0.27 0.27 43.62 2.74
5088 7447 5.737860 TCATCCCATCCTTAATCATCGATG 58.262 41.667 19.61 19.61 33.42 3.84
5130 7489 2.833582 ATGCATGCAGCTGGAGCC 60.834 61.111 26.69 8.39 45.94 4.70
5187 8062 2.434359 GGACTGGTGGTGCTACGC 60.434 66.667 0.00 0.00 33.31 4.42
5189 8064 1.067071 GTACTGGACTGGTGGTGCTAC 60.067 57.143 0.00 0.00 37.18 3.58
5190 8065 1.263356 GTACTGGACTGGTGGTGCTA 58.737 55.000 0.00 0.00 37.18 3.49
5191 8066 1.481056 GGTACTGGACTGGTGGTGCT 61.481 60.000 0.00 0.00 37.18 4.40
5360 8281 1.870901 GGTACGTGCACGGATCGAC 60.871 63.158 39.21 26.59 44.95 4.20
5361 8282 2.334181 TGGTACGTGCACGGATCGA 61.334 57.895 39.21 21.44 44.95 3.59
5362 8283 2.156446 GTGGTACGTGCACGGATCG 61.156 63.158 39.21 17.86 44.95 3.69
5363 8284 0.459585 ATGTGGTACGTGCACGGATC 60.460 55.000 39.21 34.02 44.95 3.36
5439 8624 0.811616 GGGATTCGTGGTAGCAGCAG 60.812 60.000 0.00 0.00 0.00 4.24
5440 8625 1.220749 GGGATTCGTGGTAGCAGCA 59.779 57.895 0.00 0.00 0.00 4.41
5441 8626 1.523938 GGGGATTCGTGGTAGCAGC 60.524 63.158 0.00 0.00 0.00 5.25
5586 8781 0.601841 GCCATGCCATTTGCCATAGC 60.602 55.000 0.00 0.00 40.16 2.97
5587 8782 0.319211 CGCCATGCCATTTGCCATAG 60.319 55.000 0.00 0.00 40.16 2.23
5588 8783 0.754587 TCGCCATGCCATTTGCCATA 60.755 50.000 0.00 0.00 40.16 2.74
5589 8784 1.615165 TTCGCCATGCCATTTGCCAT 61.615 50.000 0.00 0.00 40.16 4.40
5591 8786 0.462403 AATTCGCCATGCCATTTGCC 60.462 50.000 0.00 0.00 40.16 4.52
5592 8787 2.129607 CTAATTCGCCATGCCATTTGC 58.870 47.619 0.00 0.00 41.77 3.68
5593 8788 2.361757 TCCTAATTCGCCATGCCATTTG 59.638 45.455 0.00 0.00 0.00 2.32
5594 8789 2.624838 CTCCTAATTCGCCATGCCATTT 59.375 45.455 0.00 0.00 0.00 2.32
5595 8790 2.233271 CTCCTAATTCGCCATGCCATT 58.767 47.619 0.00 0.00 0.00 3.16
5601 8796 3.433740 GGAGAAACCTCCTAATTCGCCAT 60.434 47.826 4.32 0.00 45.36 4.40
5602 8797 2.093128 GGAGAAACCTCCTAATTCGCCA 60.093 50.000 4.32 0.00 45.36 5.69
5603 8798 2.562635 GGAGAAACCTCCTAATTCGCC 58.437 52.381 4.32 0.00 45.36 5.54
5748 9014 2.039624 TCTCTGCCAGGGAGGGAC 59.960 66.667 6.41 0.00 38.09 4.46
5749 9015 2.039624 GTCTCTGCCAGGGAGGGA 59.960 66.667 6.41 6.41 38.09 4.20
5750 9016 1.204113 AAAGTCTCTGCCAGGGAGGG 61.204 60.000 8.36 4.41 38.09 4.30
5751 9017 0.695347 AAAAGTCTCTGCCAGGGAGG 59.305 55.000 8.36 0.00 41.84 4.30
5758 9024 2.174349 CGCGCAAAAGTCTCTGCC 59.826 61.111 8.75 0.00 35.01 4.85
5843 9122 2.280628 GCCCAAAGTAACAGGAGATCG 58.719 52.381 0.00 0.00 0.00 3.69
5864 9144 4.122776 CTCATGACAGTACTATGGGCAAC 58.877 47.826 0.00 0.00 0.00 4.17
5865 9145 3.774766 ACTCATGACAGTACTATGGGCAA 59.225 43.478 4.22 0.00 0.00 4.52
5870 9150 3.004839 CGGGGACTCATGACAGTACTATG 59.995 52.174 0.00 0.00 0.00 2.23
5871 9151 3.223435 CGGGGACTCATGACAGTACTAT 58.777 50.000 0.00 0.00 0.00 2.12
5873 9153 1.475403 CGGGGACTCATGACAGTACT 58.525 55.000 0.00 0.00 0.00 2.73
5874 9154 0.460311 CCGGGGACTCATGACAGTAC 59.540 60.000 0.00 0.00 0.00 2.73
5875 9155 0.333652 TCCGGGGACTCATGACAGTA 59.666 55.000 0.00 0.00 0.00 2.74
5876 9156 0.544357 TTCCGGGGACTCATGACAGT 60.544 55.000 0.00 0.00 0.00 3.55
5879 9159 1.153349 GCTTCCGGGGACTCATGAC 60.153 63.158 0.00 0.00 0.00 3.06
5881 9161 0.390860 CTAGCTTCCGGGGACTCATG 59.609 60.000 0.00 0.00 0.00 3.07
5882 9162 1.403687 GCTAGCTTCCGGGGACTCAT 61.404 60.000 7.70 0.00 0.00 2.90
5981 9275 1.375140 CGCCGCATGCTATCCATCT 60.375 57.895 17.13 0.00 38.05 2.90
6048 9354 2.075837 CGGGAAAGAAAGGGACCCT 58.924 57.895 7.44 7.44 38.51 4.34
6068 9374 3.350219 TTGGAAAGGAAGGAATCGAGG 57.650 47.619 0.00 0.00 0.00 4.63
6085 9391 2.672188 TGTTATGCGTGTTCGTTTGG 57.328 45.000 0.00 0.00 39.49 3.28
6108 9476 3.263261 GTTTTTGAAACGGAGCCCAAAA 58.737 40.909 0.00 0.00 36.91 2.44
6112 9480 2.812358 ATGTTTTTGAAACGGAGCCC 57.188 45.000 0.00 0.00 0.00 5.19
6113 9481 6.779115 AATAAATGTTTTTGAAACGGAGCC 57.221 33.333 0.00 0.00 0.00 4.70
6115 9483 8.334632 AGCAAAATAAATGTTTTTGAAACGGAG 58.665 29.630 11.82 0.00 43.50 4.63
6116 9484 8.202745 AGCAAAATAAATGTTTTTGAAACGGA 57.797 26.923 11.82 0.00 43.50 4.69
6117 9485 7.585936 GGAGCAAAATAAATGTTTTTGAAACGG 59.414 33.333 11.82 0.00 43.50 4.44
6118 9486 8.119226 TGGAGCAAAATAAATGTTTTTGAAACG 58.881 29.630 11.82 0.00 43.50 3.60
6119 9487 9.949174 ATGGAGCAAAATAAATGTTTTTGAAAC 57.051 25.926 11.82 0.00 43.50 2.78
6120 9488 9.947669 CATGGAGCAAAATAAATGTTTTTGAAA 57.052 25.926 11.82 0.00 43.50 2.69
6122 9490 8.674263 ACATGGAGCAAAATAAATGTTTTTGA 57.326 26.923 11.82 0.00 43.50 2.69
6126 9494 8.851541 AATGACATGGAGCAAAATAAATGTTT 57.148 26.923 0.00 0.00 0.00 2.83
6156 9530 0.956633 ATGGACGATGGATGCAATGC 59.043 50.000 0.00 0.00 33.97 3.56
6158 9532 2.882761 CAAGATGGACGATGGATGCAAT 59.117 45.455 0.00 0.00 0.00 3.56
6159 9533 2.291365 CAAGATGGACGATGGATGCAA 58.709 47.619 0.00 0.00 0.00 4.08
6170 9544 2.012673 GATGTGGACAGCAAGATGGAC 58.987 52.381 0.00 0.00 31.58 4.02
6176 9550 3.869832 CAGAGTATGATGTGGACAGCAAG 59.130 47.826 1.23 0.00 45.93 4.01
6180 9554 6.808008 AAAAACAGAGTATGATGTGGACAG 57.192 37.500 0.00 0.00 0.00 3.51
6205 9579 1.613925 CCACAAGGAGACTCGTCAGAA 59.386 52.381 0.00 0.00 42.68 3.02
6216 9590 1.403679 TCGTTGCAAAACCACAAGGAG 59.596 47.619 0.00 0.00 36.18 3.69
6217 9591 1.464734 TCGTTGCAAAACCACAAGGA 58.535 45.000 0.00 0.00 38.09 3.36
6218 9592 2.507339 ATCGTTGCAAAACCACAAGG 57.493 45.000 0.00 0.00 42.21 3.61
6219 9593 3.443037 TCAATCGTTGCAAAACCACAAG 58.557 40.909 0.00 0.00 0.00 3.16
6220 9594 3.510388 TCAATCGTTGCAAAACCACAA 57.490 38.095 0.00 0.00 0.00 3.33
6223 9597 3.129462 TCTGTTCAATCGTTGCAAAACCA 59.871 39.130 0.00 0.00 0.00 3.67
6224 9598 3.701241 TCTGTTCAATCGTTGCAAAACC 58.299 40.909 0.00 0.00 0.00 3.27
6439 9824 4.899239 GGGCCAGGAGCGACGATG 62.899 72.222 4.39 0.00 45.17 3.84
6448 9833 3.626596 AAGGAGGAGGGGCCAGGA 61.627 66.667 4.39 0.00 40.02 3.86
6463 9848 0.107945 GAGGGAGCTAGTGGTGCAAG 60.108 60.000 0.00 0.00 33.59 4.01
6517 9904 4.659172 CTTGCTTCCCACCGGCCA 62.659 66.667 0.00 0.00 0.00 5.36
6524 9911 1.604593 GCTCCTTGCTTGCTTCCCA 60.605 57.895 0.00 0.00 38.95 4.37
6590 9983 4.037446 CCAAAACCTAGCAAGCAACAGTAA 59.963 41.667 0.00 0.00 0.00 2.24
6625 10018 1.133450 AGGAGAGGCGAGGCTTGTATA 60.133 52.381 3.19 0.00 0.00 1.47
6666 10064 0.524862 CTGTTCTACTACGGTGCGGT 59.475 55.000 0.00 0.00 0.00 5.68
6667 10065 0.801067 GCTGTTCTACTACGGTGCGG 60.801 60.000 0.00 0.00 0.00 5.69
6668 10066 0.109458 TGCTGTTCTACTACGGTGCG 60.109 55.000 0.00 0.00 0.00 5.34
6669 10067 1.630148 CTGCTGTTCTACTACGGTGC 58.370 55.000 0.00 0.00 0.00 5.01
6670 10068 1.135083 CCCTGCTGTTCTACTACGGTG 60.135 57.143 0.00 0.00 0.00 4.94
6735 10138 0.802494 ACGTACGTACTACCAACGGG 59.198 55.000 21.41 6.99 44.48 5.28
7247 10669 0.038251 TTCACAATCACTCGCTCGCT 60.038 50.000 0.00 0.00 0.00 4.93
7257 10679 4.929211 CGTCTCCATTACAGTTCACAATCA 59.071 41.667 0.00 0.00 0.00 2.57
7260 10682 4.594123 TCGTCTCCATTACAGTTCACAA 57.406 40.909 0.00 0.00 0.00 3.33
7449 10879 0.830648 TCGCCGGGAAGATTTGATCT 59.169 50.000 2.18 0.00 42.61 2.75
7450 10880 1.663695 TTCGCCGGGAAGATTTGATC 58.336 50.000 2.18 0.00 0.00 2.92
7451 10881 2.122783 TTTCGCCGGGAAGATTTGAT 57.877 45.000 2.18 0.00 35.70 2.57
7452 10882 1.898902 TTTTCGCCGGGAAGATTTGA 58.101 45.000 2.18 0.00 35.70 2.69
7453 10883 2.939460 ATTTTCGCCGGGAAGATTTG 57.061 45.000 2.18 0.00 35.70 2.32
7454 10884 3.089284 AGAATTTTCGCCGGGAAGATTT 58.911 40.909 16.91 8.59 38.98 2.17
7455 10885 2.423538 CAGAATTTTCGCCGGGAAGATT 59.576 45.455 16.23 16.23 40.89 2.40
7468 10898 2.593026 TGGCGTCCCTTTCAGAATTTT 58.407 42.857 0.00 0.00 0.00 1.82
7483 10913 1.079405 CACCACCGTATCTTGGCGT 60.079 57.895 0.00 0.00 36.20 5.68
7561 10994 2.358003 GCAGCCTCACGAGCAAGT 60.358 61.111 0.00 0.00 0.00 3.16
7582 11025 5.662456 GGTGAGTACCATCTTTAGAACTCC 58.338 45.833 6.78 0.00 46.71 3.85
7644 11088 3.188100 TATCGCCGTCGTCGTCGT 61.188 61.111 10.76 0.00 39.43 4.34
7645 11089 2.716484 GTATCGCCGTCGTCGTCG 60.716 66.667 4.87 4.87 39.77 5.12
7646 11090 1.650536 CAGTATCGCCGTCGTCGTC 60.651 63.158 0.71 0.00 36.96 4.20
7647 11091 1.434622 ATCAGTATCGCCGTCGTCGT 61.435 55.000 0.71 0.00 36.96 4.34
7648 11092 0.316772 AATCAGTATCGCCGTCGTCG 60.317 55.000 0.00 0.00 36.96 5.12
7649 11093 2.572243 CTAATCAGTATCGCCGTCGTC 58.428 52.381 0.00 0.00 36.96 4.20
7653 11097 0.039437 CCGCTAATCAGTATCGCCGT 60.039 55.000 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.