Multiple sequence alignment - TraesCS3D01G361200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G361200 chr3D 100.000 3629 0 0 1 3629 474653689 474657317 0.000000e+00 6702.0
1 TraesCS3D01G361200 chr3A 93.337 3407 148 30 258 3629 617072645 617076007 0.000000e+00 4961.0
2 TraesCS3D01G361200 chr3A 90.123 81 3 1 3549 3629 617076130 617076205 2.310000e-17 100.0
3 TraesCS3D01G361200 chr3B 95.352 2603 65 21 258 2830 631047518 631050094 0.000000e+00 4085.0
4 TraesCS3D01G361200 chr3B 87.073 820 69 13 2823 3629 631051391 631052186 0.000000e+00 893.0
5 TraesCS3D01G361200 chr2D 79.520 625 112 16 1904 2520 518970139 518970755 7.200000e-117 431.0
6 TraesCS3D01G361200 chr2D 76.571 700 110 40 1073 1742 518969290 518969965 5.810000e-88 335.0
7 TraesCS3D01G361200 chr2D 87.778 270 17 8 1 254 52040227 52040496 5.890000e-78 302.0
8 TraesCS3D01G361200 chr2D 87.594 266 18 10 1 252 29146036 29146300 9.850000e-76 294.0
9 TraesCS3D01G361200 chr2A 79.553 626 110 16 1904 2520 663145884 663145268 7.200000e-117 431.0
10 TraesCS3D01G361200 chr2A 76.934 698 111 38 1073 1742 663146733 663146058 5.770000e-93 351.0
11 TraesCS3D01G361200 chr2A 86.989 269 17 9 1 252 767387553 767387286 1.650000e-73 287.0
12 TraesCS3D01G361200 chr2A 85.768 267 25 5 1 254 742583931 742583665 1.660000e-68 270.0
13 TraesCS3D01G361200 chr2A 100.000 35 0 0 1 35 694147454 694147420 8.410000e-07 65.8
14 TraesCS3D01G361200 chr2B 78.115 626 119 18 1904 2520 611193117 611193733 7.350000e-102 381.0
15 TraesCS3D01G361200 chr2B 76.611 714 123 30 1054 1742 611192240 611192934 1.600000e-93 353.0
16 TraesCS3D01G361200 chr6B 78.100 621 100 26 1073 1672 505683150 505682545 9.580000e-96 361.0
17 TraesCS3D01G361200 chr6A 76.445 692 125 25 1073 1742 456011608 456012283 1.250000e-89 340.0
18 TraesCS3D01G361200 chr6A 88.346 266 17 9 1 254 391260596 391260859 1.270000e-79 307.0
19 TraesCS3D01G361200 chr6D 76.335 693 124 29 1073 1742 318453749 318454424 5.810000e-88 335.0
20 TraesCS3D01G361200 chr6D 86.400 250 22 6 18 256 223127236 223127484 2.780000e-66 263.0
21 TraesCS3D01G361200 chr5A 88.285 239 17 8 19 252 658488713 658488481 3.570000e-70 276.0
22 TraesCS3D01G361200 chr1A 87.097 248 22 6 18 255 312851748 312851501 4.620000e-69 272.0
23 TraesCS3D01G361200 chr4A 84.982 273 19 10 3 257 545779819 545779551 1.290000e-64 257.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G361200 chr3D 474653689 474657317 3628 False 6702.0 6702 100.0000 1 3629 1 chr3D.!!$F1 3628
1 TraesCS3D01G361200 chr3A 617072645 617076205 3560 False 2530.5 4961 91.7300 258 3629 2 chr3A.!!$F1 3371
2 TraesCS3D01G361200 chr3B 631047518 631052186 4668 False 2489.0 4085 91.2125 258 3629 2 chr3B.!!$F1 3371
3 TraesCS3D01G361200 chr2D 518969290 518970755 1465 False 383.0 431 78.0455 1073 2520 2 chr2D.!!$F3 1447
4 TraesCS3D01G361200 chr2A 663145268 663146733 1465 True 391.0 431 78.2435 1073 2520 2 chr2A.!!$R4 1447
5 TraesCS3D01G361200 chr2B 611192240 611193733 1493 False 367.0 381 77.3630 1054 2520 2 chr2B.!!$F1 1466
6 TraesCS3D01G361200 chr6B 505682545 505683150 605 True 361.0 361 78.1000 1073 1672 1 chr6B.!!$R1 599
7 TraesCS3D01G361200 chr6A 456011608 456012283 675 False 340.0 340 76.4450 1073 1742 1 chr6A.!!$F2 669
8 TraesCS3D01G361200 chr6D 318453749 318454424 675 False 335.0 335 76.3350 1073 1742 1 chr6D.!!$F2 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.175073 CGGGCCTAGTAGCGTTTCTT 59.825 55.0 0.84 0.0 0.0 2.52 F
255 256 0.249657 CGGCTGGAGATGCTCTTACC 60.250 60.0 0.00 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1062 1088 1.523711 CATGTACGCCGAGGCCAAT 60.524 57.895 5.01 0.0 37.98 3.16 R
2636 2713 2.396590 AACCAATGTACGTAGGCAGG 57.603 50.000 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.673168 GGCATGTAGAGCTTCAAGGG 58.327 55.000 0.00 0.00 0.00 3.95
20 21 1.020437 GCATGTAGAGCTTCAAGGGC 58.980 55.000 0.00 0.00 0.00 5.19
21 22 1.293924 CATGTAGAGCTTCAAGGGCG 58.706 55.000 0.00 0.00 34.52 6.13
22 23 0.179000 ATGTAGAGCTTCAAGGGCGG 59.821 55.000 0.00 0.00 34.52 6.13
23 24 1.815840 GTAGAGCTTCAAGGGCGGC 60.816 63.158 0.00 0.00 34.52 6.53
24 25 3.371097 TAGAGCTTCAAGGGCGGCG 62.371 63.158 0.51 0.51 34.52 6.46
52 53 3.204827 GCGACGACGGGCCTAGTA 61.205 66.667 9.67 0.00 40.15 1.82
53 54 3.020627 CGACGACGGGCCTAGTAG 58.979 66.667 0.84 6.59 35.72 2.57
54 55 2.720605 GACGACGGGCCTAGTAGC 59.279 66.667 0.84 0.00 0.00 3.58
55 56 3.178569 GACGACGGGCCTAGTAGCG 62.179 68.421 0.84 7.05 0.00 4.26
56 57 3.207669 CGACGGGCCTAGTAGCGT 61.208 66.667 0.84 1.47 0.00 5.07
57 58 2.768492 CGACGGGCCTAGTAGCGTT 61.768 63.158 0.84 0.00 0.00 4.84
58 59 1.514553 GACGGGCCTAGTAGCGTTT 59.485 57.895 0.84 0.00 0.00 3.60
59 60 0.527169 GACGGGCCTAGTAGCGTTTC 60.527 60.000 0.84 0.00 0.00 2.78
60 61 0.969409 ACGGGCCTAGTAGCGTTTCT 60.969 55.000 0.84 0.00 0.00 2.52
61 62 0.175073 CGGGCCTAGTAGCGTTTCTT 59.825 55.000 0.84 0.00 0.00 2.52
62 63 1.405121 CGGGCCTAGTAGCGTTTCTTT 60.405 52.381 0.84 0.00 0.00 2.52
63 64 2.708051 GGGCCTAGTAGCGTTTCTTTT 58.292 47.619 0.84 0.00 0.00 2.27
64 65 3.079578 GGGCCTAGTAGCGTTTCTTTTT 58.920 45.455 0.84 0.00 0.00 1.94
105 106 6.668541 ATGTATGAACTCATCGAAGTTTGG 57.331 37.500 4.09 0.00 39.55 3.28
106 107 5.547465 TGTATGAACTCATCGAAGTTTGGT 58.453 37.500 4.09 0.00 39.55 3.67
107 108 5.995282 TGTATGAACTCATCGAAGTTTGGTT 59.005 36.000 4.09 0.00 39.55 3.67
108 109 4.811555 TGAACTCATCGAAGTTTGGTTG 57.188 40.909 4.09 0.00 39.55 3.77
109 110 4.447290 TGAACTCATCGAAGTTTGGTTGA 58.553 39.130 4.09 0.00 39.55 3.18
110 111 4.878971 TGAACTCATCGAAGTTTGGTTGAA 59.121 37.500 4.09 0.00 39.55 2.69
111 112 5.530915 TGAACTCATCGAAGTTTGGTTGAAT 59.469 36.000 4.09 0.00 39.55 2.57
112 113 6.039270 TGAACTCATCGAAGTTTGGTTGAATT 59.961 34.615 4.09 0.00 39.55 2.17
113 114 6.391227 ACTCATCGAAGTTTGGTTGAATTT 57.609 33.333 0.00 0.00 0.00 1.82
114 115 6.208644 ACTCATCGAAGTTTGGTTGAATTTG 58.791 36.000 0.00 0.00 0.00 2.32
115 116 4.981674 TCATCGAAGTTTGGTTGAATTTGC 59.018 37.500 0.00 0.00 0.00 3.68
116 117 3.367607 TCGAAGTTTGGTTGAATTTGCG 58.632 40.909 0.00 0.00 0.00 4.85
117 118 2.097444 CGAAGTTTGGTTGAATTTGCGC 60.097 45.455 0.00 0.00 0.00 6.09
118 119 1.864565 AGTTTGGTTGAATTTGCGCC 58.135 45.000 4.18 0.00 0.00 6.53
119 120 1.412343 AGTTTGGTTGAATTTGCGCCT 59.588 42.857 4.18 0.00 0.00 5.52
120 121 2.625790 AGTTTGGTTGAATTTGCGCCTA 59.374 40.909 4.18 0.00 0.00 3.93
121 122 2.986479 GTTTGGTTGAATTTGCGCCTAG 59.014 45.455 4.18 0.00 0.00 3.02
122 123 1.904287 TGGTTGAATTTGCGCCTAGT 58.096 45.000 4.18 0.00 0.00 2.57
123 124 2.235016 TGGTTGAATTTGCGCCTAGTT 58.765 42.857 4.18 0.00 0.00 2.24
124 125 2.625790 TGGTTGAATTTGCGCCTAGTTT 59.374 40.909 4.18 0.00 0.00 2.66
125 126 2.986479 GGTTGAATTTGCGCCTAGTTTG 59.014 45.455 4.18 0.00 0.00 2.93
126 127 3.552068 GGTTGAATTTGCGCCTAGTTTGT 60.552 43.478 4.18 0.00 0.00 2.83
127 128 3.281341 TGAATTTGCGCCTAGTTTGTG 57.719 42.857 4.18 0.00 0.00 3.33
128 129 2.030363 TGAATTTGCGCCTAGTTTGTGG 60.030 45.455 4.18 0.00 0.00 4.17
129 130 1.616159 ATTTGCGCCTAGTTTGTGGT 58.384 45.000 4.18 0.00 0.00 4.16
130 131 1.394618 TTTGCGCCTAGTTTGTGGTT 58.605 45.000 4.18 0.00 0.00 3.67
131 132 1.394618 TTGCGCCTAGTTTGTGGTTT 58.605 45.000 4.18 0.00 0.00 3.27
132 133 1.394618 TGCGCCTAGTTTGTGGTTTT 58.605 45.000 4.18 0.00 0.00 2.43
133 134 1.335496 TGCGCCTAGTTTGTGGTTTTC 59.665 47.619 4.18 0.00 0.00 2.29
134 135 1.335597 GCGCCTAGTTTGTGGTTTTCC 60.336 52.381 0.00 0.00 41.14 3.13
153 154 4.079748 AAAAACGTAGGCGCCGCG 62.080 61.111 33.35 33.35 42.83 6.46
179 180 3.503363 GCATCACGCCTCCAGCAC 61.503 66.667 0.00 0.00 44.04 4.40
180 181 2.046988 CATCACGCCTCCAGCACA 60.047 61.111 0.00 0.00 44.04 4.57
181 182 2.046892 ATCACGCCTCCAGCACAC 60.047 61.111 0.00 0.00 44.04 3.82
182 183 3.939837 ATCACGCCTCCAGCACACG 62.940 63.158 0.00 0.00 44.04 4.49
186 187 4.008933 GCCTCCAGCACACGGTCT 62.009 66.667 0.00 0.00 42.97 3.85
187 188 2.743718 CCTCCAGCACACGGTCTT 59.256 61.111 0.00 0.00 0.00 3.01
188 189 1.374758 CCTCCAGCACACGGTCTTC 60.375 63.158 0.00 0.00 0.00 2.87
189 190 1.734477 CTCCAGCACACGGTCTTCG 60.734 63.158 0.00 0.00 45.88 3.79
190 191 3.414700 CCAGCACACGGTCTTCGC 61.415 66.667 0.00 0.00 43.89 4.70
191 192 3.414700 CAGCACACGGTCTTCGCC 61.415 66.667 0.00 0.00 43.89 5.54
219 220 2.293677 CCCAAAGGGCGATTTTTAGC 57.706 50.000 0.00 0.00 35.35 3.09
220 221 1.469079 CCCAAAGGGCGATTTTTAGCG 60.469 52.381 0.00 0.00 35.35 4.26
228 229 1.653609 GCGATTTTTAGCGCCTTTTGG 59.346 47.619 2.29 0.00 46.93 3.28
229 230 2.258755 CGATTTTTAGCGCCTTTTGGG 58.741 47.619 2.29 0.00 40.82 4.12
236 237 4.002506 CGCCTTTTGGGGGCCAAC 62.003 66.667 4.39 0.00 43.82 3.77
237 238 4.002506 GCCTTTTGGGGGCCAACG 62.003 66.667 4.39 0.00 43.82 4.10
238 239 3.310307 CCTTTTGGGGGCCAACGG 61.310 66.667 4.39 0.00 43.82 4.44
250 251 3.805267 CAACGGCTGGAGATGCTC 58.195 61.111 0.00 0.00 0.00 4.26
251 252 1.220206 CAACGGCTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
252 253 0.392193 CAACGGCTGGAGATGCTCTT 60.392 55.000 0.00 0.00 0.00 2.85
253 254 1.134699 CAACGGCTGGAGATGCTCTTA 60.135 52.381 0.00 0.00 0.00 2.10
254 255 0.461961 ACGGCTGGAGATGCTCTTAC 59.538 55.000 0.00 0.00 0.00 2.34
255 256 0.249657 CGGCTGGAGATGCTCTTACC 60.250 60.000 0.00 0.00 0.00 2.85
256 257 0.833287 GGCTGGAGATGCTCTTACCA 59.167 55.000 0.00 0.00 0.00 3.25
299 300 2.175069 AGCGAACATAGGTAGAGAGGGA 59.825 50.000 0.00 0.00 0.00 4.20
329 335 3.522553 GACTACACTTGTCCTGTATGCC 58.477 50.000 0.00 0.00 0.00 4.40
330 336 2.903784 ACTACACTTGTCCTGTATGCCA 59.096 45.455 0.00 0.00 0.00 4.92
331 337 2.949177 ACACTTGTCCTGTATGCCAA 57.051 45.000 0.00 0.00 0.00 4.52
332 338 3.439857 ACACTTGTCCTGTATGCCAAT 57.560 42.857 0.00 0.00 0.00 3.16
333 339 3.347216 ACACTTGTCCTGTATGCCAATC 58.653 45.455 0.00 0.00 0.00 2.67
334 340 3.009473 ACACTTGTCCTGTATGCCAATCT 59.991 43.478 0.00 0.00 0.00 2.40
335 341 4.225042 ACACTTGTCCTGTATGCCAATCTA 59.775 41.667 0.00 0.00 0.00 1.98
336 342 4.572389 CACTTGTCCTGTATGCCAATCTAC 59.428 45.833 0.00 0.00 0.00 2.59
337 343 4.225042 ACTTGTCCTGTATGCCAATCTACA 59.775 41.667 0.00 0.00 0.00 2.74
338 344 5.104360 ACTTGTCCTGTATGCCAATCTACAT 60.104 40.000 0.00 0.00 0.00 2.29
339 345 4.707105 TGTCCTGTATGCCAATCTACATG 58.293 43.478 0.00 0.00 0.00 3.21
340 346 4.164030 TGTCCTGTATGCCAATCTACATGT 59.836 41.667 2.69 2.69 0.00 3.21
341 347 4.512944 GTCCTGTATGCCAATCTACATGTG 59.487 45.833 9.11 0.00 0.00 3.21
373 379 7.984422 ACATGTGTCTGATATGTTTCTTTCA 57.016 32.000 0.00 0.00 32.77 2.69
409 415 0.991920 TGATGGTTGGAAGGGGAGAC 59.008 55.000 0.00 0.00 0.00 3.36
491 497 1.068055 AGTAACTCAAGCACGTACGGG 60.068 52.381 21.06 18.06 0.00 5.28
501 507 0.725117 CACGTACGGGAAGATTTGGC 59.275 55.000 21.06 0.00 0.00 4.52
542 548 2.404215 TCTAGTCTGCGCAAACAAGAC 58.596 47.619 17.49 16.91 0.00 3.01
592 598 5.263185 ACGAACAAACACTCTGAATTTTCG 58.737 37.500 0.00 0.00 0.00 3.46
658 664 2.400269 TACCCGAAGCCACCAACCAC 62.400 60.000 0.00 0.00 0.00 4.16
661 667 1.671054 CGAAGCCACCAACCACGAT 60.671 57.895 0.00 0.00 0.00 3.73
662 668 1.234615 CGAAGCCACCAACCACGATT 61.235 55.000 0.00 0.00 0.00 3.34
663 669 1.816074 GAAGCCACCAACCACGATTA 58.184 50.000 0.00 0.00 0.00 1.75
664 670 2.365582 GAAGCCACCAACCACGATTAT 58.634 47.619 0.00 0.00 0.00 1.28
665 671 2.507407 AGCCACCAACCACGATTATT 57.493 45.000 0.00 0.00 0.00 1.40
666 672 2.802719 AGCCACCAACCACGATTATTT 58.197 42.857 0.00 0.00 0.00 1.40
667 673 3.161866 AGCCACCAACCACGATTATTTT 58.838 40.909 0.00 0.00 0.00 1.82
668 674 4.337145 AGCCACCAACCACGATTATTTTA 58.663 39.130 0.00 0.00 0.00 1.52
669 675 4.157105 AGCCACCAACCACGATTATTTTAC 59.843 41.667 0.00 0.00 0.00 2.01
670 676 4.654015 CCACCAACCACGATTATTTTACG 58.346 43.478 0.00 0.00 0.00 3.18
671 677 4.392445 CCACCAACCACGATTATTTTACGA 59.608 41.667 0.00 0.00 0.00 3.43
672 678 5.446741 CCACCAACCACGATTATTTTACGAG 60.447 44.000 0.00 0.00 0.00 4.18
709 719 4.088762 CGCACGCGCACTGGATTT 62.089 61.111 5.73 0.00 38.40 2.17
713 723 2.099062 CGCGCACTGGATTTGAGC 59.901 61.111 8.75 0.00 36.53 4.26
752 762 7.698130 CAGAAATTTTCTTGTTGAGAAGAACGT 59.302 33.333 8.95 0.00 44.80 3.99
785 795 2.826128 AGAAGTATGGACGAGAGCAACA 59.174 45.455 0.00 0.00 0.00 3.33
914 925 3.025322 ACACATTTCCCAACTCACCAA 57.975 42.857 0.00 0.00 0.00 3.67
976 989 6.712547 ACCTCTTGGTTAATTATATCAGCTGC 59.287 38.462 9.47 0.00 46.05 5.25
1062 1088 4.595538 GTGGTGACGGTCGTGGCA 62.596 66.667 0.00 0.00 0.00 4.92
1525 1563 2.435693 ATCCTAGCCGACCACTGCC 61.436 63.158 0.00 0.00 0.00 4.85
2552 2629 3.382832 AAGGGACCTCGCCGACTG 61.383 66.667 0.00 0.00 0.00 3.51
2636 2713 2.322422 CGCTGCATAGTCTTGCGC 59.678 61.111 0.00 0.00 45.77 6.09
2711 2788 7.077605 CGCTGAATTTGTTCTTCTTCATACAA 58.922 34.615 0.00 0.00 0.00 2.41
2949 4330 7.931578 AACGGAACAAAATTATCCAGTATCA 57.068 32.000 0.00 0.00 32.58 2.15
2996 4384 6.161911 AGAAAGAAAGAATAACGCGGTTAC 57.838 37.500 12.47 0.00 30.49 2.50
3043 4433 7.096065 GGTTAATCCATCTTAATCAATTTGCGC 60.096 37.037 0.00 0.00 35.97 6.09
3046 4436 3.970610 CCATCTTAATCAATTTGCGCTCG 59.029 43.478 9.73 0.00 0.00 5.03
3071 4461 0.828022 TGTCGCAATATTCGGGAGGT 59.172 50.000 7.23 0.00 0.00 3.85
3072 4462 1.208535 TGTCGCAATATTCGGGAGGTT 59.791 47.619 7.23 0.00 0.00 3.50
3073 4463 2.285977 GTCGCAATATTCGGGAGGTTT 58.714 47.619 7.23 0.00 0.00 3.27
3074 4464 2.681344 GTCGCAATATTCGGGAGGTTTT 59.319 45.455 7.23 0.00 0.00 2.43
3100 4490 6.800072 TTTGTTTTCCATGAAGTTAAGGGT 57.200 33.333 0.00 0.00 0.00 4.34
3101 4491 6.399639 TTGTTTTCCATGAAGTTAAGGGTC 57.600 37.500 0.00 0.00 0.00 4.46
3103 4493 5.534654 TGTTTTCCATGAAGTTAAGGGTCAG 59.465 40.000 0.00 0.00 0.00 3.51
3104 4494 3.350219 TCCATGAAGTTAAGGGTCAGC 57.650 47.619 0.00 0.00 0.00 4.26
3108 4504 0.611714 GAAGTTAAGGGTCAGCCGGA 59.388 55.000 5.05 0.00 34.97 5.14
3121 4517 4.022676 GGTCAGCCGGATGTTTTTCTTAAA 60.023 41.667 20.97 0.00 0.00 1.52
3125 4521 5.983118 CAGCCGGATGTTTTTCTTAAACTTT 59.017 36.000 12.68 0.00 0.00 2.66
3143 4539 7.690952 AAACTTTACTTCCAAACGGCATATA 57.309 32.000 0.00 0.00 0.00 0.86
3163 4559 7.171337 GCATATAACCAATTCGAATGGCATTTT 59.829 33.333 14.93 1.36 41.89 1.82
3167 4563 5.550290 ACCAATTCGAATGGCATTTTCTTT 58.450 33.333 14.93 4.13 41.89 2.52
3182 4578 2.613026 TCTTTGTTGCGTTCTGGAGA 57.387 45.000 0.00 0.00 0.00 3.71
3207 4603 4.730966 AGAGGCTTCGACTATAGATGGAA 58.269 43.478 6.78 5.84 0.00 3.53
3208 4604 5.329399 AGAGGCTTCGACTATAGATGGAAT 58.671 41.667 6.78 0.00 0.00 3.01
3250 4646 5.694006 GGTCTCTAGCGAAAGTACGACTATA 59.306 44.000 0.00 0.00 35.09 1.31
3256 4652 8.066595 TCTAGCGAAAGTACGACTATAAACATC 58.933 37.037 0.00 0.00 35.09 3.06
3257 4653 5.975939 AGCGAAAGTACGACTATAAACATCC 59.024 40.000 0.00 0.00 35.09 3.51
3291 4687 5.661503 TGCCCCTATTTCAAATCCTCATA 57.338 39.130 0.00 0.00 0.00 2.15
3298 4694 7.473593 CCTATTTCAAATCCTCATAAGGGGAT 58.526 38.462 0.00 0.00 43.56 3.85
3306 4702 2.495383 CCTCATAAGGGGATAGGCCTCA 60.495 54.545 9.68 0.00 40.87 3.86
3307 4703 2.836981 CTCATAAGGGGATAGGCCTCAG 59.163 54.545 9.68 0.00 40.87 3.35
3326 4722 4.787551 TCAGTCCTGTTGTTTAACCATGT 58.212 39.130 0.00 0.00 35.92 3.21
3380 4776 4.752101 GGTCTATTGGGTCATTTGATCGAG 59.248 45.833 0.00 0.00 0.00 4.04
3389 4785 2.364002 TCATTTGATCGAGGCGGTGATA 59.636 45.455 0.00 0.00 0.00 2.15
3406 4802 4.856664 GTGATACACACCTCCAGTATACG 58.143 47.826 0.00 0.00 43.05 3.06
3407 4803 3.887110 TGATACACACCTCCAGTATACGG 59.113 47.826 7.25 7.25 0.00 4.02
3408 4804 2.519771 ACACACCTCCAGTATACGGA 57.480 50.000 13.45 13.45 0.00 4.69
3409 4805 3.028094 ACACACCTCCAGTATACGGAT 57.972 47.619 14.20 0.00 0.00 4.18
3410 4806 2.693591 ACACACCTCCAGTATACGGATG 59.306 50.000 14.20 13.77 0.00 3.51
3411 4807 2.956333 CACACCTCCAGTATACGGATGA 59.044 50.000 18.49 4.65 0.00 2.92
3412 4808 3.574396 CACACCTCCAGTATACGGATGAT 59.426 47.826 18.49 8.86 0.00 2.45
3413 4809 4.765339 CACACCTCCAGTATACGGATGATA 59.235 45.833 18.49 1.33 0.00 2.15
3414 4810 4.765856 ACACCTCCAGTATACGGATGATAC 59.234 45.833 18.49 0.00 0.00 2.24
3415 4811 4.158025 CACCTCCAGTATACGGATGATACC 59.842 50.000 18.49 0.00 31.27 2.73
3416 4812 4.202641 ACCTCCAGTATACGGATGATACCA 60.203 45.833 18.49 0.00 31.27 3.25
3417 4813 4.956700 CCTCCAGTATACGGATGATACCAT 59.043 45.833 14.20 0.00 35.29 3.55
3418 4814 5.163509 CCTCCAGTATACGGATGATACCATG 60.164 48.000 14.20 0.00 32.09 3.66
3419 4815 4.709886 TCCAGTATACGGATGATACCATGG 59.290 45.833 11.19 11.19 32.09 3.66
3451 4847 4.227197 AGGGATCGGAACTAGACATCATT 58.773 43.478 0.00 0.00 0.00 2.57
3484 4880 2.166130 TTGCTTGGAGGCGATGTCGA 62.166 55.000 6.60 0.00 43.02 4.20
3492 4888 2.408050 GAGGCGATGTCGATGCTAAAT 58.592 47.619 6.60 0.00 43.02 1.40
3498 4894 5.107104 GGCGATGTCGATGCTAAATATCAAA 60.107 40.000 6.60 0.00 43.02 2.69
3527 4923 4.371624 AGAATGAAGTTGTGGTGATGGA 57.628 40.909 0.00 0.00 0.00 3.41
3535 4931 7.047891 TGAAGTTGTGGTGATGGAATATCTAC 58.952 38.462 0.00 0.00 0.00 2.59
3577 4973 8.877864 AATTACCAATAATCTGAACCACAAGA 57.122 30.769 0.00 0.00 30.27 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.673168 CCCTTGAAGCTCTACATGCC 58.327 55.000 0.00 0.00 0.00 4.40
1 2 1.020437 GCCCTTGAAGCTCTACATGC 58.980 55.000 0.00 0.00 0.00 4.06
2 3 1.293924 CGCCCTTGAAGCTCTACATG 58.706 55.000 0.00 0.00 0.00 3.21
3 4 0.179000 CCGCCCTTGAAGCTCTACAT 59.821 55.000 0.00 0.00 0.00 2.29
4 5 1.596934 CCGCCCTTGAAGCTCTACA 59.403 57.895 0.00 0.00 0.00 2.74
5 6 1.815840 GCCGCCCTTGAAGCTCTAC 60.816 63.158 0.00 0.00 0.00 2.59
6 7 2.584608 GCCGCCCTTGAAGCTCTA 59.415 61.111 0.00 0.00 0.00 2.43
7 8 4.767255 CGCCGCCCTTGAAGCTCT 62.767 66.667 0.00 0.00 0.00 4.09
35 36 3.178569 CTACTAGGCCCGTCGTCGC 62.179 68.421 0.00 0.00 35.54 5.19
36 37 3.020627 CTACTAGGCCCGTCGTCG 58.979 66.667 0.00 0.00 0.00 5.12
37 38 2.720605 GCTACTAGGCCCGTCGTC 59.279 66.667 0.00 0.00 0.00 4.20
38 39 3.207669 CGCTACTAGGCCCGTCGT 61.208 66.667 0.00 0.00 0.00 4.34
39 40 2.275547 AAACGCTACTAGGCCCGTCG 62.276 60.000 0.00 0.45 32.89 5.12
40 41 0.527169 GAAACGCTACTAGGCCCGTC 60.527 60.000 0.00 0.00 32.89 4.79
41 42 0.969409 AGAAACGCTACTAGGCCCGT 60.969 55.000 0.00 0.00 35.14 5.28
42 43 0.175073 AAGAAACGCTACTAGGCCCG 59.825 55.000 0.00 0.00 0.00 6.13
43 44 2.398252 AAAGAAACGCTACTAGGCCC 57.602 50.000 0.00 0.00 0.00 5.80
79 80 8.830580 CCAAACTTCGATGAGTTCATACATATT 58.169 33.333 5.16 0.00 38.86 1.28
80 81 7.987458 ACCAAACTTCGATGAGTTCATACATAT 59.013 33.333 5.16 0.00 38.86 1.78
81 82 7.327975 ACCAAACTTCGATGAGTTCATACATA 58.672 34.615 5.16 0.00 38.86 2.29
82 83 6.173339 ACCAAACTTCGATGAGTTCATACAT 58.827 36.000 5.16 0.00 38.86 2.29
83 84 5.547465 ACCAAACTTCGATGAGTTCATACA 58.453 37.500 5.16 0.00 38.86 2.29
84 85 6.147164 TCAACCAAACTTCGATGAGTTCATAC 59.853 38.462 5.16 0.00 38.86 2.39
85 86 6.227522 TCAACCAAACTTCGATGAGTTCATA 58.772 36.000 5.16 0.00 38.86 2.15
86 87 5.063204 TCAACCAAACTTCGATGAGTTCAT 58.937 37.500 5.16 0.00 38.86 2.57
87 88 4.447290 TCAACCAAACTTCGATGAGTTCA 58.553 39.130 5.16 0.00 38.86 3.18
88 89 5.418310 TTCAACCAAACTTCGATGAGTTC 57.582 39.130 5.16 0.00 38.86 3.01
89 90 6.391227 AATTCAACCAAACTTCGATGAGTT 57.609 33.333 5.16 0.60 41.44 3.01
90 91 6.208644 CAAATTCAACCAAACTTCGATGAGT 58.791 36.000 5.16 0.00 0.00 3.41
91 92 5.117592 GCAAATTCAACCAAACTTCGATGAG 59.882 40.000 5.16 0.00 0.00 2.90
92 93 4.981674 GCAAATTCAACCAAACTTCGATGA 59.018 37.500 5.16 0.00 0.00 2.92
93 94 4.143556 CGCAAATTCAACCAAACTTCGATG 60.144 41.667 0.00 0.00 0.00 3.84
94 95 3.980775 CGCAAATTCAACCAAACTTCGAT 59.019 39.130 0.00 0.00 0.00 3.59
95 96 3.367607 CGCAAATTCAACCAAACTTCGA 58.632 40.909 0.00 0.00 0.00 3.71
96 97 2.097444 GCGCAAATTCAACCAAACTTCG 60.097 45.455 0.30 0.00 0.00 3.79
97 98 2.220824 GGCGCAAATTCAACCAAACTTC 59.779 45.455 10.83 0.00 0.00 3.01
98 99 2.158971 AGGCGCAAATTCAACCAAACTT 60.159 40.909 10.83 0.00 0.00 2.66
99 100 1.412343 AGGCGCAAATTCAACCAAACT 59.588 42.857 10.83 0.00 0.00 2.66
100 101 1.864565 AGGCGCAAATTCAACCAAAC 58.135 45.000 10.83 0.00 0.00 2.93
101 102 2.625790 ACTAGGCGCAAATTCAACCAAA 59.374 40.909 10.83 0.00 0.00 3.28
102 103 2.235016 ACTAGGCGCAAATTCAACCAA 58.765 42.857 10.83 0.00 0.00 3.67
103 104 1.904287 ACTAGGCGCAAATTCAACCA 58.096 45.000 10.83 0.00 0.00 3.67
104 105 2.986479 CAAACTAGGCGCAAATTCAACC 59.014 45.455 10.83 0.00 0.00 3.77
105 106 3.425193 CACAAACTAGGCGCAAATTCAAC 59.575 43.478 10.83 0.00 0.00 3.18
106 107 3.551863 CCACAAACTAGGCGCAAATTCAA 60.552 43.478 10.83 0.00 0.00 2.69
107 108 2.030363 CCACAAACTAGGCGCAAATTCA 60.030 45.455 10.83 0.00 0.00 2.57
108 109 2.030274 ACCACAAACTAGGCGCAAATTC 60.030 45.455 10.83 0.00 0.00 2.17
109 110 1.960689 ACCACAAACTAGGCGCAAATT 59.039 42.857 10.83 0.00 0.00 1.82
110 111 1.616159 ACCACAAACTAGGCGCAAAT 58.384 45.000 10.83 0.00 0.00 2.32
111 112 1.394618 AACCACAAACTAGGCGCAAA 58.605 45.000 10.83 0.00 0.00 3.68
112 113 1.394618 AAACCACAAACTAGGCGCAA 58.605 45.000 10.83 0.00 0.00 4.85
113 114 1.335496 GAAAACCACAAACTAGGCGCA 59.665 47.619 10.83 0.00 0.00 6.09
114 115 1.335597 GGAAAACCACAAACTAGGCGC 60.336 52.381 0.00 0.00 0.00 6.53
115 116 1.950909 TGGAAAACCACAAACTAGGCG 59.049 47.619 0.00 0.00 0.00 5.52
116 117 4.394439 TTTGGAAAACCACAAACTAGGC 57.606 40.909 0.00 0.00 32.14 3.93
136 137 4.079748 CGCGGCGCCTACGTTTTT 62.080 61.111 27.87 0.00 42.83 1.94
162 163 3.503363 GTGCTGGAGGCGTGATGC 61.503 66.667 0.00 0.00 45.43 3.91
163 164 2.046988 TGTGCTGGAGGCGTGATG 60.047 61.111 0.00 0.00 45.43 3.07
164 165 2.046892 GTGTGCTGGAGGCGTGAT 60.047 61.111 0.00 0.00 45.43 3.06
165 166 4.662961 CGTGTGCTGGAGGCGTGA 62.663 66.667 0.00 0.00 45.43 4.35
169 170 3.537206 AAGACCGTGTGCTGGAGGC 62.537 63.158 0.00 0.00 42.22 4.70
170 171 1.374758 GAAGACCGTGTGCTGGAGG 60.375 63.158 0.00 0.00 0.00 4.30
171 172 1.734477 CGAAGACCGTGTGCTGGAG 60.734 63.158 0.00 0.00 0.00 3.86
172 173 2.338620 CGAAGACCGTGTGCTGGA 59.661 61.111 0.00 0.00 0.00 3.86
173 174 3.414700 GCGAAGACCGTGTGCTGG 61.415 66.667 0.00 0.00 41.15 4.85
174 175 3.414700 GGCGAAGACCGTGTGCTG 61.415 66.667 0.00 0.00 41.15 4.41
201 202 1.908065 CGCTAAAAATCGCCCTTTGG 58.092 50.000 0.00 0.00 0.00 3.28
202 203 1.268265 GCGCTAAAAATCGCCCTTTG 58.732 50.000 0.00 0.00 45.01 2.77
203 204 3.713936 GCGCTAAAAATCGCCCTTT 57.286 47.368 0.00 0.00 45.01 3.11
209 210 2.258755 CCCAAAAGGCGCTAAAAATCG 58.741 47.619 7.64 0.00 0.00 3.34
210 211 2.616960 CCCCAAAAGGCGCTAAAAATC 58.383 47.619 7.64 0.00 0.00 2.17
211 212 1.277842 CCCCCAAAAGGCGCTAAAAAT 59.722 47.619 7.64 0.00 0.00 1.82
212 213 0.682292 CCCCCAAAAGGCGCTAAAAA 59.318 50.000 7.64 0.00 0.00 1.94
213 214 1.822114 GCCCCCAAAAGGCGCTAAAA 61.822 55.000 7.64 0.00 41.41 1.52
214 215 2.279810 GCCCCCAAAAGGCGCTAAA 61.280 57.895 7.64 0.00 41.41 1.85
215 216 2.678580 GCCCCCAAAAGGCGCTAA 60.679 61.111 7.64 0.00 41.41 3.09
220 221 4.002506 CGTTGGCCCCCAAAAGGC 62.003 66.667 0.00 0.00 45.73 4.35
221 222 3.310307 CCGTTGGCCCCCAAAAGG 61.310 66.667 0.00 0.00 45.73 3.11
222 223 4.002506 GCCGTTGGCCCCCAAAAG 62.003 66.667 0.00 0.00 45.73 2.27
233 234 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
244 245 6.392625 TCTACACTACATGGTAAGAGCATC 57.607 41.667 0.00 0.00 33.46 3.91
245 246 6.239430 CCATCTACACTACATGGTAAGAGCAT 60.239 42.308 0.00 0.00 36.65 3.79
246 247 5.069119 CCATCTACACTACATGGTAAGAGCA 59.931 44.000 0.00 0.00 33.57 4.26
247 248 5.302059 TCCATCTACACTACATGGTAAGAGC 59.698 44.000 0.00 0.00 38.62 4.09
248 249 6.961360 TCCATCTACACTACATGGTAAGAG 57.039 41.667 0.00 0.00 38.62 2.85
249 250 7.066781 TCATCCATCTACACTACATGGTAAGA 58.933 38.462 0.00 0.00 38.62 2.10
250 251 7.290110 TCATCCATCTACACTACATGGTAAG 57.710 40.000 0.00 0.00 38.62 2.34
251 252 7.669089 TTCATCCATCTACACTACATGGTAA 57.331 36.000 0.00 0.00 38.62 2.85
252 253 7.508977 TCATTCATCCATCTACACTACATGGTA 59.491 37.037 0.00 0.00 38.62 3.25
253 254 6.327365 TCATTCATCCATCTACACTACATGGT 59.673 38.462 0.00 0.00 38.62 3.55
254 255 6.762333 TCATTCATCCATCTACACTACATGG 58.238 40.000 0.00 0.00 38.83 3.66
255 256 6.368243 GCTCATTCATCCATCTACACTACATG 59.632 42.308 0.00 0.00 0.00 3.21
256 257 6.462500 GCTCATTCATCCATCTACACTACAT 58.538 40.000 0.00 0.00 0.00 2.29
273 274 5.440234 TCTCTACCTATGTTCGCTCATTC 57.560 43.478 0.00 0.00 0.00 2.67
299 300 1.605738 AAGTGTAGTCCGCCCTCGT 60.606 57.895 0.00 0.00 0.00 4.18
327 333 2.954318 AGATTGGCACATGTAGATTGGC 59.046 45.455 0.00 0.00 39.30 4.52
328 334 5.125356 TGTAGATTGGCACATGTAGATTGG 58.875 41.667 0.00 0.00 39.30 3.16
329 335 6.665465 CATGTAGATTGGCACATGTAGATTG 58.335 40.000 0.00 0.00 44.50 2.67
330 336 6.872628 CATGTAGATTGGCACATGTAGATT 57.127 37.500 0.00 0.00 44.50 2.40
337 343 3.943381 CAGACACATGTAGATTGGCACAT 59.057 43.478 0.00 0.00 39.30 3.21
338 344 3.007831 TCAGACACATGTAGATTGGCACA 59.992 43.478 0.00 0.00 0.00 4.57
339 345 3.599343 TCAGACACATGTAGATTGGCAC 58.401 45.455 0.00 0.00 0.00 5.01
340 346 3.979101 TCAGACACATGTAGATTGGCA 57.021 42.857 0.00 0.00 0.00 4.92
341 347 5.994054 ACATATCAGACACATGTAGATTGGC 59.006 40.000 0.00 0.00 31.26 4.52
373 379 4.202567 ACCATCATACAACCAACTGAACCT 60.203 41.667 0.00 0.00 0.00 3.50
409 415 1.549170 AGTAGCAGTAGGTGGGAAACG 59.451 52.381 0.00 0.00 0.00 3.60
491 497 3.367395 GCCCACAGTTTAGCCAAATCTTC 60.367 47.826 0.00 0.00 0.00 2.87
501 507 4.020128 AGAGAAAGGTAGCCCACAGTTTAG 60.020 45.833 0.00 0.00 0.00 1.85
542 548 1.063806 CGACTGCTCTCGTTTTCCTG 58.936 55.000 0.00 0.00 0.00 3.86
592 598 2.985847 GGAGGGTGTTGTGCTGCC 60.986 66.667 0.00 0.00 0.00 4.85
670 676 5.163982 GCGTGTGGAGTGAGTAAAATAACTC 60.164 44.000 0.00 0.00 45.10 3.01
671 677 4.689345 GCGTGTGGAGTGAGTAAAATAACT 59.311 41.667 0.00 0.00 0.00 2.24
672 678 4.449743 TGCGTGTGGAGTGAGTAAAATAAC 59.550 41.667 0.00 0.00 0.00 1.89
709 719 2.181777 GGTGATGTCGCTCGCTCA 59.818 61.111 0.00 0.00 0.00 4.26
713 723 1.645034 ATTTCTGGTGATGTCGCTCG 58.355 50.000 0.00 0.00 0.00 5.03
752 762 3.523157 TCCATACTTCTTGCCTTGATGGA 59.477 43.478 0.00 0.00 39.17 3.41
803 813 3.110447 TGCAAGGTTTTGAATTCCTGC 57.890 42.857 2.27 1.72 36.36 4.85
804 814 4.746611 GTCTTGCAAGGTTTTGAATTCCTG 59.253 41.667 25.73 0.00 36.36 3.86
805 815 4.651045 AGTCTTGCAAGGTTTTGAATTCCT 59.349 37.500 25.73 0.00 36.36 3.36
806 816 4.948847 AGTCTTGCAAGGTTTTGAATTCC 58.051 39.130 25.73 0.00 36.36 3.01
914 925 1.519751 TTAACAAATGGCGCGGTGCT 61.520 50.000 13.85 0.00 45.43 4.40
1046 1072 3.171828 AATGCCACGACCGTCACCA 62.172 57.895 0.00 0.00 0.00 4.17
1062 1088 1.523711 CATGTACGCCGAGGCCAAT 60.524 57.895 5.01 0.00 37.98 3.16
2636 2713 2.396590 AACCAATGTACGTAGGCAGG 57.603 50.000 0.00 0.00 0.00 4.85
2819 2897 7.968405 CGGGAGAAAATAATGTTTTACCTTCAG 59.032 37.037 9.33 0.00 0.00 3.02
2842 4222 0.390603 TAAGTCGACAATGCACCGGG 60.391 55.000 19.50 0.00 0.00 5.73
2964 4352 7.482113 GCGTTATTCTTTCTTTCTTTAGCCTTC 59.518 37.037 0.00 0.00 0.00 3.46
2966 4354 6.402226 CGCGTTATTCTTTCTTTCTTTAGCCT 60.402 38.462 0.00 0.00 0.00 4.58
2967 4355 5.733109 CGCGTTATTCTTTCTTTCTTTAGCC 59.267 40.000 0.00 0.00 0.00 3.93
2968 4356 5.733109 CCGCGTTATTCTTTCTTTCTTTAGC 59.267 40.000 4.92 0.00 0.00 3.09
2996 4384 2.900122 ATCCACAATCAGAAAACGCG 57.100 45.000 3.53 3.53 0.00 6.01
3043 4433 3.415385 CGAATATTGCGACAATTTGCGAG 59.585 43.478 13.82 1.01 34.37 5.03
3046 4436 2.788786 CCCGAATATTGCGACAATTTGC 59.211 45.455 9.73 1.96 0.00 3.68
3052 4442 0.828022 ACCTCCCGAATATTGCGACA 59.172 50.000 0.00 0.00 0.00 4.35
3077 4467 6.381420 TGACCCTTAACTTCATGGAAAACAAA 59.619 34.615 0.00 0.00 0.00 2.83
3079 4469 5.450453 TGACCCTTAACTTCATGGAAAACA 58.550 37.500 0.00 0.00 0.00 2.83
3099 4489 4.759516 TTAAGAAAAACATCCGGCTGAC 57.240 40.909 13.24 0.00 0.00 3.51
3100 4490 4.825085 AGTTTAAGAAAAACATCCGGCTGA 59.175 37.500 13.24 0.00 32.81 4.26
3101 4491 5.121221 AGTTTAAGAAAAACATCCGGCTG 57.879 39.130 3.14 3.14 32.81 4.85
3103 4493 7.143340 AGTAAAGTTTAAGAAAAACATCCGGC 58.857 34.615 0.00 0.00 32.81 6.13
3104 4494 9.177304 GAAGTAAAGTTTAAGAAAAACATCCGG 57.823 33.333 0.00 0.00 32.81 5.14
3121 4517 6.094464 GGTTATATGCCGTTTGGAAGTAAAGT 59.906 38.462 0.00 0.00 37.49 2.66
3125 4521 5.100344 TGGTTATATGCCGTTTGGAAGTA 57.900 39.130 0.00 0.00 37.49 2.24
3133 4529 5.278266 CCATTCGAATTGGTTATATGCCGTT 60.278 40.000 8.21 0.00 0.00 4.44
3143 4539 5.151297 AGAAAATGCCATTCGAATTGGTT 57.849 34.783 20.52 11.51 32.04 3.67
3163 4559 2.483876 CTCTCCAGAACGCAACAAAGA 58.516 47.619 0.00 0.00 0.00 2.52
3167 4563 0.318441 CTCCTCTCCAGAACGCAACA 59.682 55.000 0.00 0.00 0.00 3.33
3182 4578 4.331968 CATCTATAGTCGAAGCCTCTCCT 58.668 47.826 0.00 0.00 0.00 3.69
3207 4603 4.080129 AGACCAACTGCATGATCCAACTAT 60.080 41.667 0.00 0.00 0.00 2.12
3208 4604 3.264193 AGACCAACTGCATGATCCAACTA 59.736 43.478 0.00 0.00 0.00 2.24
3250 4646 0.638292 ATGCCTCCCCATGGATGTTT 59.362 50.000 15.22 0.00 40.80 2.83
3256 4652 4.928140 GGGCATGCCTCCCCATGG 62.928 72.222 34.70 4.14 42.18 3.66
3291 4687 0.400670 GGACTGAGGCCTATCCCCTT 60.401 60.000 4.42 0.00 34.51 3.95
3298 4694 1.729586 AACAACAGGACTGAGGCCTA 58.270 50.000 6.50 0.00 33.51 3.93
3306 4702 3.888930 CCACATGGTTAAACAACAGGACT 59.111 43.478 0.00 0.00 0.00 3.85
3307 4703 4.237349 CCACATGGTTAAACAACAGGAC 57.763 45.455 0.00 0.00 0.00 3.85
3389 4785 2.519771 TCCGTATACTGGAGGTGTGT 57.480 50.000 11.02 0.00 0.00 3.72
3402 4798 5.013079 ACAATCACCATGGTATCATCCGTAT 59.987 40.000 19.28 0.00 0.00 3.06
3403 4799 4.346709 ACAATCACCATGGTATCATCCGTA 59.653 41.667 19.28 0.00 0.00 4.02
3404 4800 3.136443 ACAATCACCATGGTATCATCCGT 59.864 43.478 19.28 5.86 0.00 4.69
3405 4801 3.743521 ACAATCACCATGGTATCATCCG 58.256 45.455 19.28 3.08 0.00 4.18
3406 4802 3.748048 CGACAATCACCATGGTATCATCC 59.252 47.826 19.28 5.28 0.00 3.51
3407 4803 4.631131 TCGACAATCACCATGGTATCATC 58.369 43.478 19.28 10.78 0.00 2.92
3408 4804 4.503817 CCTCGACAATCACCATGGTATCAT 60.504 45.833 19.28 7.21 0.00 2.45
3409 4805 3.181466 CCTCGACAATCACCATGGTATCA 60.181 47.826 19.28 4.80 0.00 2.15
3410 4806 3.393800 CCTCGACAATCACCATGGTATC 58.606 50.000 19.28 9.36 0.00 2.24
3411 4807 2.104792 CCCTCGACAATCACCATGGTAT 59.895 50.000 19.28 8.96 0.00 2.73
3412 4808 1.484653 CCCTCGACAATCACCATGGTA 59.515 52.381 19.28 6.79 0.00 3.25
3413 4809 0.253044 CCCTCGACAATCACCATGGT 59.747 55.000 13.00 13.00 0.00 3.55
3414 4810 0.541392 TCCCTCGACAATCACCATGG 59.459 55.000 11.19 11.19 0.00 3.66
3415 4811 2.487934 GATCCCTCGACAATCACCATG 58.512 52.381 0.00 0.00 0.00 3.66
3416 4812 2.918712 GATCCCTCGACAATCACCAT 57.081 50.000 0.00 0.00 0.00 3.55
3451 4847 5.191727 TCCAAGCAAAGGATGAGGATTTA 57.808 39.130 0.00 0.00 0.00 1.40
3509 4905 6.666678 AGATATTCCATCACCACAACTTCAT 58.333 36.000 0.00 0.00 0.00 2.57
3513 4909 6.814954 AGTAGATATTCCATCACCACAACT 57.185 37.500 0.00 0.00 0.00 3.16
3535 4931 3.810310 AATTCGCTCCTACTCCTCAAG 57.190 47.619 0.00 0.00 0.00 3.02
3577 4973 4.850386 GTGGGTAATGGGGAAGGACTATAT 59.150 45.833 0.00 0.00 0.00 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.