Multiple sequence alignment - TraesCS3D01G360600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G360600 chr3D 100.000 2378 0 0 1 2378 474218663 474216286 0.000000e+00 4392
1 TraesCS3D01G360600 chr3A 88.333 2057 154 33 355 2378 616494703 616492700 0.000000e+00 2390
2 TraesCS3D01G360600 chr3B 92.788 1248 73 11 1134 2378 630402797 630401564 0.000000e+00 1790
3 TraesCS3D01G360600 chr3B 86.654 547 53 8 355 899 630403326 630402798 2.630000e-164 588
4 TraesCS3D01G360600 chr3B 90.698 344 31 1 1 344 630404021 630403679 7.750000e-125 457


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G360600 chr3D 474216286 474218663 2377 True 4392 4392 100.000000 1 2378 1 chr3D.!!$R1 2377
1 TraesCS3D01G360600 chr3A 616492700 616494703 2003 True 2390 2390 88.333000 355 2378 1 chr3A.!!$R1 2023
2 TraesCS3D01G360600 chr3B 630401564 630404021 2457 True 945 1790 90.046667 1 2378 3 chr3B.!!$R1 2377

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
517 861 0.391597 ACCGCCATATTAGGACACGG 59.608 55.0 0.0 0.0 44.49 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1868 2246 0.321298 TGAGTTGGCTTAAGGACGGC 60.321 55.0 4.29 0.0 0.0 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.999712 CACCCCACCCCTTCATAACT 59.000 55.000 0.00 0.00 0.00 2.24
59 60 5.343058 GCACAATATCAACATCAACACACAC 59.657 40.000 0.00 0.00 0.00 3.82
67 68 6.856895 TCAACATCAACACACACACAAAATA 58.143 32.000 0.00 0.00 0.00 1.40
73 74 6.856895 TCAACACACACACAAAATAACATCA 58.143 32.000 0.00 0.00 0.00 3.07
150 151 3.853671 GCGACCAAAATGATGATCAACAC 59.146 43.478 7.94 0.00 0.00 3.32
151 152 4.090729 CGACCAAAATGATGATCAACACG 58.909 43.478 7.94 1.94 0.00 4.49
161 162 7.734924 ATGATGATCAACACGCTACATTAAT 57.265 32.000 7.94 0.00 0.00 1.40
162 163 6.947258 TGATGATCAACACGCTACATTAATG 58.053 36.000 14.01 14.01 0.00 1.90
165 166 5.872070 TGATCAACACGCTACATTAATGACA 59.128 36.000 22.16 8.20 0.00 3.58
236 237 5.614923 TTTTCAACAACAACGACTTCAGA 57.385 34.783 0.00 0.00 0.00 3.27
237 238 5.614923 TTTCAACAACAACGACTTCAGAA 57.385 34.783 0.00 0.00 0.00 3.02
238 239 5.614923 TTCAACAACAACGACTTCAGAAA 57.385 34.783 0.00 0.00 0.00 2.52
275 276 4.717629 CGTCGTCGCCAGAGCCAA 62.718 66.667 0.00 0.00 34.57 4.52
279 280 2.045926 GTCGCCAGAGCCAACCAT 60.046 61.111 0.00 0.00 34.57 3.55
281 282 2.046023 CGCCAGAGCCAACCATCA 60.046 61.111 0.00 0.00 34.57 3.07
330 331 4.949856 TGAAGATTAAGTCCCAGCAAATCC 59.050 41.667 0.00 0.00 0.00 3.01
344 345 1.679680 CAAATCCGAGCAATGCCTCAT 59.320 47.619 0.00 0.00 0.00 2.90
345 346 2.880268 CAAATCCGAGCAATGCCTCATA 59.120 45.455 0.00 0.00 0.00 2.15
348 349 2.997980 TCCGAGCAATGCCTCATAAAA 58.002 42.857 0.00 0.00 0.00 1.52
349 350 2.682856 TCCGAGCAATGCCTCATAAAAC 59.317 45.455 0.00 0.00 0.00 2.43
350 351 2.223572 CCGAGCAATGCCTCATAAAACC 60.224 50.000 0.00 0.00 0.00 3.27
366 709 4.335400 AAAACCAATTGCTCCATCGTTT 57.665 36.364 0.00 0.58 0.00 3.60
392 735 4.083537 TCTGTGGCGACAAAACATAATCAC 60.084 41.667 2.34 0.00 46.06 3.06
393 736 3.565902 TGTGGCGACAAAACATAATCACA 59.434 39.130 0.00 0.00 46.06 3.58
394 737 4.217334 TGTGGCGACAAAACATAATCACAT 59.783 37.500 0.00 0.00 46.06 3.21
395 738 5.412904 TGTGGCGACAAAACATAATCACATA 59.587 36.000 0.00 0.00 46.06 2.29
396 739 6.072452 TGTGGCGACAAAACATAATCACATAA 60.072 34.615 0.00 0.00 46.06 1.90
397 740 6.972328 GTGGCGACAAAACATAATCACATAAT 59.028 34.615 0.00 0.00 46.06 1.28
398 741 7.165812 GTGGCGACAAAACATAATCACATAATC 59.834 37.037 0.00 0.00 46.06 1.75
439 782 1.062428 AGATCCAAGATCCCCCGTACA 60.062 52.381 0.99 0.00 0.00 2.90
459 802 0.460987 GTCACTGCAATCGCCTAGCT 60.461 55.000 0.00 0.00 37.32 3.32
472 815 0.392336 CCTAGCTGAGCAGGACCATC 59.608 60.000 15.03 0.00 31.74 3.51
488 832 3.762429 ATCCATCACCTGCGCGCAT 62.762 57.895 36.48 19.30 0.00 4.73
515 859 3.470645 AGAACCGCCATATTAGGACAC 57.529 47.619 0.00 0.00 0.00 3.67
516 860 2.132762 GAACCGCCATATTAGGACACG 58.867 52.381 0.00 0.00 0.00 4.49
517 861 0.391597 ACCGCCATATTAGGACACGG 59.608 55.000 0.00 0.00 44.49 4.94
523 867 0.396811 ATATTAGGACACGGCAGGCC 59.603 55.000 0.00 0.00 0.00 5.19
565 909 1.632409 AGAGACATGATTGTGGCCACT 59.368 47.619 34.75 17.79 35.79 4.00
573 917 1.888512 GATTGTGGCCACTGACATGTT 59.111 47.619 34.75 11.58 0.00 2.71
592 936 2.660064 GCCACCAGAGACCACCGAT 61.660 63.158 0.00 0.00 0.00 4.18
620 964 1.033746 AATATGCACCGCTGCTGCTT 61.034 50.000 14.03 10.47 44.57 3.91
736 1080 0.473886 ACCAGTGTCAGGGCTTAGGT 60.474 55.000 0.00 0.00 0.00 3.08
773 1117 4.360405 GCGGCAAGGGGAAGGGAA 62.360 66.667 0.00 0.00 0.00 3.97
802 1146 4.108124 AGAGGTAGGAGATGGTGGCTTATA 59.892 45.833 0.00 0.00 0.00 0.98
811 1155 3.637911 TGGTGGCTTATATTTCGGTGT 57.362 42.857 0.00 0.00 0.00 4.16
817 1161 3.985925 GGCTTATATTTCGGTGTCTACGG 59.014 47.826 0.00 0.00 0.00 4.02
818 1162 3.427863 GCTTATATTTCGGTGTCTACGGC 59.572 47.826 0.00 0.00 0.00 5.68
819 1163 4.795308 GCTTATATTTCGGTGTCTACGGCT 60.795 45.833 0.00 0.00 0.00 5.52
820 1164 5.563475 GCTTATATTTCGGTGTCTACGGCTA 60.563 44.000 0.00 0.00 0.00 3.93
821 1165 6.579666 TTATATTTCGGTGTCTACGGCTAT 57.420 37.500 0.00 0.00 0.00 2.97
822 1166 2.857592 TTTCGGTGTCTACGGCTATC 57.142 50.000 0.00 0.00 0.00 2.08
823 1167 1.753930 TTCGGTGTCTACGGCTATCA 58.246 50.000 0.00 0.00 0.00 2.15
824 1168 1.753930 TCGGTGTCTACGGCTATCAA 58.246 50.000 0.00 0.00 0.00 2.57
825 1169 2.093890 TCGGTGTCTACGGCTATCAAA 58.906 47.619 0.00 0.00 0.00 2.69
826 1170 2.492881 TCGGTGTCTACGGCTATCAAAA 59.507 45.455 0.00 0.00 0.00 2.44
891 1237 6.926280 TTTTTACTTTGCATTATGTCTGCG 57.074 33.333 0.00 0.00 42.62 5.18
1008 1354 9.915629 CACCTACATATCCTAGTTATGAAAGAC 57.084 37.037 13.90 0.00 32.53 3.01
1050 1396 4.170256 GTCTCTTCAAGGATCGACTCAAC 58.830 47.826 0.00 0.00 0.00 3.18
1108 1482 2.123769 GCCACTGCCCCATATGCA 60.124 61.111 0.00 0.00 37.17 3.96
1110 1484 2.019897 GCCACTGCCCCATATGCAAC 62.020 60.000 0.00 0.00 38.46 4.17
1144 1518 3.745975 TGACGACCTTCACATGTTCATTC 59.254 43.478 0.00 0.00 0.00 2.67
1153 1527 3.329225 TCACATGTTCATTCAGTACCCCA 59.671 43.478 0.00 0.00 0.00 4.96
1157 1531 4.771114 TGTTCATTCAGTACCCCATAGG 57.229 45.455 0.00 0.00 43.78 2.57
1164 1538 1.774254 CAGTACCCCATAGGCATCCAA 59.226 52.381 0.00 0.00 40.58 3.53
1167 1541 3.467103 AGTACCCCATAGGCATCCAAATT 59.533 43.478 0.00 0.00 40.58 1.82
1186 1560 2.212752 TTGGGATGCCCTATTCCTCT 57.787 50.000 0.00 0.00 45.70 3.69
1187 1561 2.212752 TGGGATGCCCTATTCCTCTT 57.787 50.000 0.00 0.00 45.70 2.85
1219 1593 2.972021 TCCATCGAGCTCATTTGGGATA 59.028 45.455 20.50 5.07 0.00 2.59
1220 1594 3.070018 CCATCGAGCTCATTTGGGATAC 58.930 50.000 15.40 0.00 0.00 2.24
1234 1608 0.834612 GGATACCCCCATGTTGTCGA 59.165 55.000 0.00 0.00 0.00 4.20
1242 1616 1.156736 CCATGTTGTCGAACCTCCAC 58.843 55.000 0.00 0.00 0.00 4.02
1284 1658 2.840038 TGCTCTCTCCTTGCTATGGAAA 59.160 45.455 0.00 0.00 32.61 3.13
1315 1689 7.436933 GGATTCCAGAAACATTCTTGTCTTTT 58.563 34.615 0.00 0.00 38.11 2.27
1474 1849 1.065358 CAATTGCAAAGCTCGCCTTG 58.935 50.000 1.71 0.00 33.01 3.61
1482 1857 0.317479 AAGCTCGCCTTGTAGTCGTT 59.683 50.000 0.00 0.00 30.99 3.85
1500 1875 4.029087 GTCGTTTTTGAGTAATGCATTCGC 59.971 41.667 16.86 10.38 39.24 4.70
1628 2005 7.335924 TGAATCTTGTTACCATTAGTTAGCACC 59.664 37.037 0.00 0.00 0.00 5.01
1866 2244 1.078214 CTTCCTCCATTGCTCGCCA 60.078 57.895 0.00 0.00 0.00 5.69
1867 2245 1.078214 TTCCTCCATTGCTCGCCAG 60.078 57.895 0.00 0.00 0.00 4.85
1868 2246 2.515523 CCTCCATTGCTCGCCAGG 60.516 66.667 0.00 0.00 0.00 4.45
1869 2247 3.207669 CTCCATTGCTCGCCAGGC 61.208 66.667 0.00 0.00 0.00 4.85
1870 2248 4.802051 TCCATTGCTCGCCAGGCC 62.802 66.667 5.63 0.00 0.00 5.19
2102 2480 1.227089 GAGATGGTCGCGCTGATGT 60.227 57.895 5.56 0.00 0.00 3.06
2245 2623 2.283966 ACTCTGGACTGGGACGGG 60.284 66.667 0.00 0.00 40.47 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.999712 AGTTATGAAGGGGTGGGGTG 59.000 55.000 0.00 0.00 0.00 4.61
12 13 1.774856 CCTAGTTATGAAGGGGTGGGG 59.225 57.143 0.00 0.00 0.00 4.96
29 30 6.827762 TGTTGATGTTGATATTGTGCATCCTA 59.172 34.615 0.00 0.00 36.17 2.94
67 68 8.575589 TGTATGACTTTGCTATTTGTTGATGTT 58.424 29.630 0.00 0.00 0.00 2.71
73 74 6.209391 AGGCTTGTATGACTTTGCTATTTGTT 59.791 34.615 0.00 0.00 0.00 2.83
81 82 4.021191 GCTTAGGCTTGTATGACTTTGC 57.979 45.455 0.00 0.00 35.22 3.68
112 113 3.500680 TGGTCGCTTTGAAGTTAATCCAC 59.499 43.478 0.00 0.00 0.00 4.02
114 115 4.759516 TTGGTCGCTTTGAAGTTAATCC 57.240 40.909 0.00 0.00 0.00 3.01
150 151 7.581011 TGCATATACTGTCATTAATGTAGCG 57.419 36.000 14.97 5.53 0.00 4.26
151 152 9.154847 TGATGCATATACTGTCATTAATGTAGC 57.845 33.333 14.97 7.68 0.00 3.58
161 162 8.913487 AGAAATGATTGATGCATATACTGTCA 57.087 30.769 0.00 0.00 0.00 3.58
162 163 9.608617 CAAGAAATGATTGATGCATATACTGTC 57.391 33.333 0.00 0.00 0.00 3.51
165 166 9.346005 TGTCAAGAAATGATTGATGCATATACT 57.654 29.630 0.00 0.00 40.97 2.12
204 205 7.061789 GTCGTTGTTGTTGAAAAACATTTCTCT 59.938 33.333 1.16 0.00 37.38 3.10
212 213 5.854338 TCTGAAGTCGTTGTTGTTGAAAAAC 59.146 36.000 0.00 0.00 0.00 2.43
215 216 5.614923 TTCTGAAGTCGTTGTTGTTGAAA 57.385 34.783 0.00 0.00 0.00 2.69
236 237 1.154197 GCTTAAGCGTCGTTCCCTTT 58.846 50.000 12.53 0.00 0.00 3.11
237 238 2.836944 GCTTAAGCGTCGTTCCCTT 58.163 52.632 12.53 0.00 0.00 3.95
238 239 4.592426 GCTTAAGCGTCGTTCCCT 57.408 55.556 12.53 0.00 0.00 4.20
261 262 3.958147 ATGGTTGGCTCTGGCGACG 62.958 63.158 5.60 0.00 42.49 5.12
271 272 0.968405 TCAAGCCTTTGATGGTTGGC 59.032 50.000 0.00 0.00 45.21 4.52
279 280 2.978156 ACCCAAGATCAAGCCTTTGA 57.022 45.000 0.00 0.00 46.67 2.69
281 282 5.221641 GGTAAAAACCCAAGATCAAGCCTTT 60.222 40.000 0.00 0.00 0.00 3.11
296 297 6.152323 GGGACTTAATCTTCAGGGTAAAAACC 59.848 42.308 0.00 0.00 0.00 3.27
330 331 2.423185 TGGTTTTATGAGGCATTGCTCG 59.577 45.455 8.82 0.00 0.00 5.03
344 345 5.461032 AAACGATGGAGCAATTGGTTTTA 57.539 34.783 12.13 1.93 0.00 1.52
345 346 4.335400 AAACGATGGAGCAATTGGTTTT 57.665 36.364 12.13 4.36 0.00 2.43
348 349 2.627699 ACAAAACGATGGAGCAATTGGT 59.372 40.909 10.50 10.50 0.00 3.67
349 350 3.057315 AGACAAAACGATGGAGCAATTGG 60.057 43.478 7.72 0.00 0.00 3.16
350 351 3.916172 CAGACAAAACGATGGAGCAATTG 59.084 43.478 0.00 0.00 0.00 2.32
412 755 4.657013 GGGGGATCTTGGATCTTCATAAC 58.343 47.826 7.35 0.00 0.00 1.89
439 782 0.460987 GCTAGGCGATTGCAGTGACT 60.461 55.000 7.38 0.00 45.35 3.41
459 802 0.543277 GTGATGGATGGTCCTGCTCA 59.457 55.000 0.00 0.00 37.46 4.26
472 815 4.246206 CATGCGCGCAGGTGATGG 62.246 66.667 38.44 17.14 0.00 3.51
488 832 2.418368 ATATGGCGGTTCTTTGCTCA 57.582 45.000 0.00 0.00 0.00 4.26
528 872 0.750546 TCTAGGTACGCAGGCGACAT 60.751 55.000 21.62 13.46 42.83 3.06
531 875 1.094073 GTCTCTAGGTACGCAGGCGA 61.094 60.000 21.62 1.03 42.83 5.54
536 880 3.699538 ACAATCATGTCTCTAGGTACGCA 59.300 43.478 0.00 0.00 33.41 5.24
573 917 3.625897 CGGTGGTCTCTGGTGGCA 61.626 66.667 0.00 0.00 0.00 4.92
592 936 1.374560 CGGTGCATATTTTGTCCGGA 58.625 50.000 0.00 0.00 39.48 5.14
620 964 0.618458 GGTAGAGGGCATGGTTGTGA 59.382 55.000 0.00 0.00 0.00 3.58
679 1023 2.108970 GGGAGGTCTTTCGTCTGGTAT 58.891 52.381 0.00 0.00 0.00 2.73
773 1117 2.794760 ACCATCTCCTACCTCTCCATCT 59.205 50.000 0.00 0.00 0.00 2.90
802 1146 2.691526 TGATAGCCGTAGACACCGAAAT 59.308 45.455 0.00 0.00 0.00 2.17
811 1155 5.784578 TGATAGCTTTTGATAGCCGTAGA 57.215 39.130 0.00 0.00 42.20 2.59
817 1161 6.238869 CCTCCCTTTTGATAGCTTTTGATAGC 60.239 42.308 0.00 0.00 41.53 2.97
818 1162 6.238869 GCCTCCCTTTTGATAGCTTTTGATAG 60.239 42.308 0.00 0.00 0.00 2.08
819 1163 5.594317 GCCTCCCTTTTGATAGCTTTTGATA 59.406 40.000 0.00 0.00 0.00 2.15
820 1164 4.403752 GCCTCCCTTTTGATAGCTTTTGAT 59.596 41.667 0.00 0.00 0.00 2.57
821 1165 3.763897 GCCTCCCTTTTGATAGCTTTTGA 59.236 43.478 0.00 0.00 0.00 2.69
822 1166 3.511146 TGCCTCCCTTTTGATAGCTTTTG 59.489 43.478 0.00 0.00 0.00 2.44
823 1167 3.511540 GTGCCTCCCTTTTGATAGCTTTT 59.488 43.478 0.00 0.00 0.00 2.27
824 1168 3.092301 GTGCCTCCCTTTTGATAGCTTT 58.908 45.455 0.00 0.00 0.00 3.51
825 1169 2.041620 TGTGCCTCCCTTTTGATAGCTT 59.958 45.455 0.00 0.00 0.00 3.74
826 1170 1.635487 TGTGCCTCCCTTTTGATAGCT 59.365 47.619 0.00 0.00 0.00 3.32
1003 1349 6.455646 CGAAATCGAAGGAATTGATCGTCTTT 60.456 38.462 0.00 0.00 43.02 2.52
1006 1352 4.267928 ACGAAATCGAAGGAATTGATCGTC 59.732 41.667 10.16 0.00 43.02 4.20
1008 1354 4.504461 AGACGAAATCGAAGGAATTGATCG 59.496 41.667 10.16 0.00 43.02 3.69
1050 1396 2.847327 TGAAGAGGTTGCTCTTGGAG 57.153 50.000 0.00 0.00 43.03 3.86
1074 1420 2.045340 CCGTTGGGGGTGATGGTC 60.045 66.667 0.00 0.00 0.00 4.02
1099 1470 0.464373 ACTGGAGCGTTGCATATGGG 60.464 55.000 4.56 0.00 0.00 4.00
1100 1471 1.064505 CAACTGGAGCGTTGCATATGG 59.935 52.381 4.56 0.00 37.98 2.74
1102 1473 2.401583 TCAACTGGAGCGTTGCATAT 57.598 45.000 0.00 0.00 42.98 1.78
1103 1474 2.009051 CATCAACTGGAGCGTTGCATA 58.991 47.619 0.00 0.00 42.98 3.14
1108 1482 0.317160 TCGTCATCAACTGGAGCGTT 59.683 50.000 0.00 0.00 0.00 4.84
1110 1484 1.078759 GGTCGTCATCAACTGGAGCG 61.079 60.000 0.00 0.00 0.00 5.03
1144 1518 1.434188 TGGATGCCTATGGGGTACTG 58.566 55.000 0.00 0.00 37.43 2.74
1167 1541 5.041460 CCAAGAGGAATAGGGCATCCCAA 62.041 52.174 4.51 0.00 41.67 4.12
1180 1554 4.344865 GGGCGGCACCAAGAGGAA 62.345 66.667 12.47 0.00 42.05 3.36
1186 1560 4.424711 GATGGAGGGCGGCACCAA 62.425 66.667 25.12 12.79 42.05 3.67
1219 1593 1.074248 GGTTCGACAACATGGGGGT 59.926 57.895 0.00 0.00 33.70 4.95
1220 1594 0.676782 GAGGTTCGACAACATGGGGG 60.677 60.000 0.00 0.00 33.70 5.40
1226 1600 1.068417 CCGTGGAGGTTCGACAACA 59.932 57.895 0.00 0.00 33.70 3.33
1242 1616 0.448990 TCGACGACCTAATGTCACCG 59.551 55.000 0.00 0.00 44.71 4.94
1248 1622 3.046390 GAGAGCAATCGACGACCTAATG 58.954 50.000 0.00 0.00 0.00 1.90
1252 1626 0.736053 GAGAGAGCAATCGACGACCT 59.264 55.000 0.00 0.00 0.00 3.85
1284 1658 6.940430 AGAATGTTTCTGGAATCCCAAATT 57.060 33.333 0.00 0.00 42.98 1.82
1315 1689 1.300620 CGGAGTGGAGTTCGTTGCA 60.301 57.895 0.00 0.00 0.00 4.08
1474 1849 6.461698 CGAATGCATTACTCAAAAACGACTAC 59.538 38.462 12.97 0.00 0.00 2.73
1482 1857 3.822594 ACGCGAATGCATTACTCAAAA 57.177 38.095 15.93 0.00 42.97 2.44
1509 1884 2.314852 TGACCAATCACTAGGGGAGAGA 59.685 50.000 0.00 0.00 0.00 3.10
1590 1967 7.433680 GGTAACAAGATTCAGTTTTGGTGAAT 58.566 34.615 0.00 0.00 45.37 2.57
1591 1968 6.801575 GGTAACAAGATTCAGTTTTGGTGAA 58.198 36.000 0.76 0.00 38.28 3.18
1628 2005 2.569404 AGCACAAGAGGTAAAGAGGAGG 59.431 50.000 0.00 0.00 0.00 4.30
1756 2134 2.178273 CGGGCGGCTACAAAAAGC 59.822 61.111 9.56 0.00 41.99 3.51
1867 2245 1.002502 AGTTGGCTTAAGGACGGCC 60.003 57.895 0.00 0.00 45.45 6.13
1868 2246 0.321298 TGAGTTGGCTTAAGGACGGC 60.321 55.000 4.29 0.00 0.00 5.68
1869 2247 1.676014 CCTGAGTTGGCTTAAGGACGG 60.676 57.143 4.29 0.00 33.24 4.79
1870 2248 1.002087 ACCTGAGTTGGCTTAAGGACG 59.998 52.381 4.29 0.00 34.66 4.79
1883 2261 2.757868 CTCTAGTTGCTGCTACCTGAGT 59.242 50.000 18.24 3.20 0.00 3.41
2102 2480 2.747686 GACCGTCTTCCTGGGCAA 59.252 61.111 0.00 0.00 31.69 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.