Multiple sequence alignment - TraesCS3D01G359100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G359100 chr3D 100.000 3036 0 0 1 3036 472941043 472944078 0.000000e+00 5607.0
1 TraesCS3D01G359100 chr3D 91.304 69 4 2 2964 3031 360327649 360327716 3.220000e-15 93.5
2 TraesCS3D01G359100 chr3D 95.000 40 2 0 190 229 403093929 403093890 2.530000e-06 63.9
3 TraesCS3D01G359100 chr3B 90.393 2467 104 51 357 2719 628101077 628103514 0.000000e+00 3120.0
4 TraesCS3D01G359100 chr3B 89.908 327 27 6 2710 3033 628114921 628115244 1.680000e-112 416.0
5 TraesCS3D01G359100 chr3B 85.959 292 27 8 1 290 628100445 628100724 1.770000e-77 300.0
6 TraesCS3D01G359100 chr3B 87.931 58 6 1 179 235 785698045 785698102 1.950000e-07 67.6
7 TraesCS3D01G359100 chr3A 92.099 1696 82 21 454 2117 615050552 615052227 0.000000e+00 2342.0
8 TraesCS3D01G359100 chr3A 85.488 441 32 14 1 430 615050139 615050558 6.010000e-117 431.0
9 TraesCS3D01G359100 chr3A 87.302 63 7 1 171 233 362811566 362811627 1.510000e-08 71.3
10 TraesCS3D01G359100 chr3A 93.023 43 3 0 199 241 124081045 124081003 2.530000e-06 63.9
11 TraesCS3D01G359100 chr2D 82.903 310 27 15 2560 2847 639093784 639094089 3.880000e-64 255.0
12 TraesCS3D01G359100 chr2D 89.130 92 7 3 2947 3036 73447496 73447406 8.900000e-21 111.0
13 TraesCS3D01G359100 chr7B 90.789 76 5 2 2962 3036 602638915 602638989 1.930000e-17 100.0
14 TraesCS3D01G359100 chr7B 90.667 75 6 1 2963 3036 70828329 70828255 6.930000e-17 99.0
15 TraesCS3D01G359100 chr7B 86.747 83 7 4 2957 3036 578680201 578680120 4.170000e-14 89.8
16 TraesCS3D01G359100 chr7B 97.561 41 1 0 2385 2425 123804882 123804922 1.510000e-08 71.3
17 TraesCS3D01G359100 chr4A 89.333 75 8 0 2962 3036 739859382 739859308 8.960000e-16 95.3
18 TraesCS3D01G359100 chr4A 89.333 75 8 0 2962 3036 740565155 740565081 8.960000e-16 95.3
19 TraesCS3D01G359100 chr1D 89.333 75 7 1 2962 3036 120533123 120533196 3.220000e-15 93.5
20 TraesCS3D01G359100 chr6D 93.617 47 3 0 2385 2431 10420810 10420764 1.510000e-08 71.3
21 TraesCS3D01G359100 chr7D 92.000 50 2 2 182 229 17224805 17224756 5.430000e-08 69.4
22 TraesCS3D01G359100 chr2B 97.500 40 1 0 2386 2425 430233894 430233855 5.430000e-08 69.4
23 TraesCS3D01G359100 chr2A 90.196 51 5 0 2385 2435 47615884 47615934 1.950000e-07 67.6
24 TraesCS3D01G359100 chr2A 91.111 45 2 2 2378 2421 334555537 334555580 3.270000e-05 60.2
25 TraesCS3D01G359100 chr6B 95.122 41 2 0 2385 2425 125406979 125407019 7.030000e-07 65.8
26 TraesCS3D01G359100 chr5A 91.489 47 4 0 189 235 618952353 618952399 7.030000e-07 65.8
27 TraesCS3D01G359100 chr4B 100.000 31 0 0 205 235 69354717 69354687 1.180000e-04 58.4
28 TraesCS3D01G359100 chr1A 92.308 39 1 2 2375 2412 569248163 569248200 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G359100 chr3D 472941043 472944078 3035 False 5607.0 5607 100.0000 1 3036 1 chr3D.!!$F2 3035
1 TraesCS3D01G359100 chr3B 628100445 628103514 3069 False 1710.0 3120 88.1760 1 2719 2 chr3B.!!$F3 2718
2 TraesCS3D01G359100 chr3A 615050139 615052227 2088 False 1386.5 2342 88.7935 1 2117 2 chr3A.!!$F2 2116

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
770 1093 0.245539 CCACTCTACTTTCCGCCGAA 59.754 55.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2766 3174 0.031449 GGAGAGATAGGTCGTGCTGC 59.969 60.0 0.0 0.0 0.0 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.138304 TGGTGGATGCGCTTATGATTAC 58.862 45.455 9.73 0.00 0.00 1.89
42 43 0.934496 TGCGCTTATGATTACCGTGC 59.066 50.000 9.73 0.00 0.00 5.34
59 60 2.259618 GTGCGTCGCTTATCTTCTTCA 58.740 47.619 19.50 0.00 0.00 3.02
143 147 2.264005 TGGGCGTGAGTGTATTGTTT 57.736 45.000 0.00 0.00 0.00 2.83
146 150 2.147958 GGCGTGAGTGTATTGTTTCCA 58.852 47.619 0.00 0.00 0.00 3.53
148 152 2.411031 GCGTGAGTGTATTGTTTCCACG 60.411 50.000 0.00 0.00 45.68 4.94
164 168 2.701006 CGGCCGTCGTATTTGCTG 59.299 61.111 19.50 0.00 0.00 4.41
166 170 0.802994 CGGCCGTCGTATTTGCTGTA 60.803 55.000 19.50 0.00 0.00 2.74
167 171 1.578583 GGCCGTCGTATTTGCTGTAT 58.421 50.000 0.00 0.00 0.00 2.29
173 177 5.050634 GCCGTCGTATTTGCTGTATCATTTA 60.051 40.000 0.00 0.00 0.00 1.40
185 189 6.658816 TGCTGTATCATTTAGATGTTGGTTGT 59.341 34.615 0.00 0.00 37.57 3.32
186 190 7.826744 TGCTGTATCATTTAGATGTTGGTTGTA 59.173 33.333 0.00 0.00 37.57 2.41
187 191 8.840321 GCTGTATCATTTAGATGTTGGTTGTAT 58.160 33.333 0.00 0.00 37.57 2.29
189 193 9.119418 TGTATCATTTAGATGTTGGTTGTATGG 57.881 33.333 0.00 0.00 37.57 2.74
190 194 9.120538 GTATCATTTAGATGTTGGTTGTATGGT 57.879 33.333 0.00 0.00 37.57 3.55
191 195 8.593945 ATCATTTAGATGTTGGTTGTATGGTT 57.406 30.769 0.00 0.00 35.06 3.67
192 196 7.825681 TCATTTAGATGTTGGTTGTATGGTTG 58.174 34.615 0.00 0.00 34.77 3.77
193 197 6.582677 TTTAGATGTTGGTTGTATGGTTGG 57.417 37.500 0.00 0.00 0.00 3.77
194 198 4.112634 AGATGTTGGTTGTATGGTTGGT 57.887 40.909 0.00 0.00 0.00 3.67
195 199 4.479158 AGATGTTGGTTGTATGGTTGGTT 58.521 39.130 0.00 0.00 0.00 3.67
196 200 4.280677 AGATGTTGGTTGTATGGTTGGTTG 59.719 41.667 0.00 0.00 0.00 3.77
251 255 8.854614 TTTTGAGAAAATCTTCTTCCTCCTAG 57.145 34.615 0.00 0.00 42.19 3.02
269 273 1.439543 AGCACCAGTTCTTTCTCCCT 58.560 50.000 0.00 0.00 0.00 4.20
314 318 2.234296 CCCTCCCCTGTCCTTGCTT 61.234 63.158 0.00 0.00 0.00 3.91
319 323 2.270986 CCCTGTCCTTGCTTGCCAC 61.271 63.158 0.00 0.00 0.00 5.01
389 684 2.140792 GGGGCTATGGCTTCTCCGA 61.141 63.158 0.00 0.00 37.80 4.55
425 720 2.987149 ACTAGAAAATGTGACTGACGCG 59.013 45.455 3.53 3.53 0.00 6.01
436 731 4.201871 TGTGACTGACGCGAAGAAAATTTT 60.202 37.500 15.93 2.28 0.00 1.82
444 739 2.405025 GCGAAGAAAATTTTCAGGCACG 59.595 45.455 28.00 23.17 39.61 5.34
454 749 6.604735 AATTTTCAGGCACGTGAGATATAC 57.395 37.500 22.23 0.00 0.00 1.47
503 798 2.360350 ACATTGCTGAGCACCCGG 60.360 61.111 6.64 0.00 38.71 5.73
574 881 1.063469 GCCAAACGATATGGACAACGG 59.937 52.381 9.50 0.00 40.56 4.44
634 944 5.589192 AGTCCAAGCATCATTACGTACTAC 58.411 41.667 0.00 0.00 0.00 2.73
635 945 5.360144 AGTCCAAGCATCATTACGTACTACT 59.640 40.000 0.00 0.00 0.00 2.57
636 946 6.544931 AGTCCAAGCATCATTACGTACTACTA 59.455 38.462 0.00 0.00 0.00 1.82
637 947 7.067859 AGTCCAAGCATCATTACGTACTACTAA 59.932 37.037 0.00 0.00 0.00 2.24
638 948 7.866393 GTCCAAGCATCATTACGTACTACTAAT 59.134 37.037 0.00 0.00 0.00 1.73
639 949 9.070179 TCCAAGCATCATTACGTACTACTAATA 57.930 33.333 0.00 0.00 0.00 0.98
665 978 9.708092 ATACTTGTTTTCTCTTCCAACTAGTAC 57.292 33.333 0.00 0.00 39.71 2.73
666 979 7.793036 ACTTGTTTTCTCTTCCAACTAGTACT 58.207 34.615 0.00 0.00 35.57 2.73
667 980 7.927092 ACTTGTTTTCTCTTCCAACTAGTACTC 59.073 37.037 0.00 0.00 35.57 2.59
668 981 6.444633 TGTTTTCTCTTCCAACTAGTACTCG 58.555 40.000 0.00 0.00 0.00 4.18
705 1022 2.159881 GGCGTGTTCTCAACAACGATAC 60.160 50.000 12.45 0.00 44.16 2.24
770 1093 0.245539 CCACTCTACTTTCCGCCGAA 59.754 55.000 0.00 0.00 0.00 4.30
775 1098 2.603560 CTCTACTTTCCGCCGAATCAAC 59.396 50.000 0.00 0.00 0.00 3.18
839 1185 1.086696 CATCATTGACACCACGACCC 58.913 55.000 0.00 0.00 0.00 4.46
924 1291 1.519455 CGCAGTCCCCTTCGATGTC 60.519 63.158 0.00 0.00 28.00 3.06
972 1339 4.923871 CCACCGCTGAACAGTATATATCAC 59.076 45.833 3.77 0.00 0.00 3.06
1078 1445 0.682852 ACCGAAGATGTCCGACCAAA 59.317 50.000 0.00 0.00 0.00 3.28
1079 1446 1.076332 CCGAAGATGTCCGACCAAAC 58.924 55.000 0.00 0.00 0.00 2.93
1080 1447 1.076332 CGAAGATGTCCGACCAAACC 58.924 55.000 0.00 0.00 0.00 3.27
1081 1448 1.076332 GAAGATGTCCGACCAAACCG 58.924 55.000 0.00 0.00 0.00 4.44
1082 1449 0.953960 AAGATGTCCGACCAAACCGC 60.954 55.000 0.00 0.00 0.00 5.68
1083 1450 2.359478 ATGTCCGACCAAACCGCC 60.359 61.111 0.00 0.00 0.00 6.13
1644 2029 2.588034 GGGTACAAGATCCCGCGC 60.588 66.667 0.00 0.00 33.97 6.86
1914 2299 1.623311 GAAGGGGAAAAATGGTGTGGG 59.377 52.381 0.00 0.00 0.00 4.61
1975 2360 2.159282 GCTGCTTGTGATTGAGGATTGG 60.159 50.000 0.00 0.00 0.00 3.16
2011 2397 7.393216 TCCTTTGGAAATTGAATATGGTTTGG 58.607 34.615 0.00 0.00 0.00 3.28
2072 2458 3.786368 TGGATCAACACTGAACCATGA 57.214 42.857 0.00 0.00 46.49 3.07
2076 2462 4.095483 GGATCAACACTGAACCATGATCAC 59.905 45.833 14.00 2.89 45.12 3.06
2094 2480 4.487714 TCACCTTGAAGTGATCCCATAC 57.512 45.455 0.00 0.00 41.78 2.39
2097 2483 4.577693 CACCTTGAAGTGATCCCATACATG 59.422 45.833 0.00 0.00 40.34 3.21
2126 2520 7.018826 CGCAGACTAAAAATTGGACGATTTTA 58.981 34.615 9.92 0.00 38.04 1.52
2127 2521 7.535940 CGCAGACTAAAAATTGGACGATTTTAA 59.464 33.333 9.92 0.00 38.04 1.52
2128 2522 9.187455 GCAGACTAAAAATTGGACGATTTTAAA 57.813 29.630 9.92 2.95 38.04 1.52
2137 2531 7.964545 ATTGGACGATTTTAAAAATAGTCGC 57.035 32.000 17.28 11.78 32.78 5.19
2162 2556 4.727235 ACTTCGTTAGTGCAGTTTTAGC 57.273 40.909 0.00 0.00 35.19 3.09
2176 2570 3.253432 AGTTTTAGCTTTGGTAGTGCAGC 59.747 43.478 0.00 0.00 0.00 5.25
2295 2690 4.887655 ACGGAGTACATCAGTATGTCATCA 59.112 41.667 0.00 0.00 42.92 3.07
2296 2691 5.009110 ACGGAGTACATCAGTATGTCATCAG 59.991 44.000 0.00 0.00 42.92 2.90
2297 2692 5.009110 CGGAGTACATCAGTATGTCATCAGT 59.991 44.000 0.00 0.00 42.92 3.41
2300 2695 7.013369 GGAGTACATCAGTATGTCATCAGTACA 59.987 40.741 0.00 0.00 42.92 2.90
2301 2696 8.470657 AGTACATCAGTATGTCATCAGTACAT 57.529 34.615 0.00 0.00 42.92 2.29
2302 2697 8.572185 AGTACATCAGTATGTCATCAGTACATC 58.428 37.037 0.00 0.00 42.92 3.06
2305 2700 7.069208 ACATCAGTATGTCATCAGTACATCAGT 59.931 37.037 0.00 0.00 42.92 3.41
2306 2701 8.571336 CATCAGTATGTCATCAGTACATCAGTA 58.429 37.037 0.00 0.00 38.49 2.74
2315 2722 9.803315 GTCATCAGTACATCAGTATGTCTAAAA 57.197 33.333 0.00 0.00 42.92 1.52
2384 2791 5.009710 GCATAAGCTCCCCAAAGTTTATACC 59.990 44.000 0.00 0.00 32.80 2.73
2385 2792 4.668138 AAGCTCCCCAAAGTTTATACCA 57.332 40.909 0.00 0.00 0.00 3.25
2425 2832 7.340743 TCAAAAACACTTATTTTGGGACAGAGA 59.659 33.333 10.72 0.00 44.18 3.10
2481 2888 9.855021 AACTTGAATTATTTTATTGAGAACCCG 57.145 29.630 0.00 0.00 0.00 5.28
2586 2993 3.244181 CCCTGTTTGTTTCAGATTTGGGG 60.244 47.826 0.00 0.00 35.20 4.96
2600 3007 0.031616 TTGGGGGCTGTTTTTGGACT 60.032 50.000 0.00 0.00 0.00 3.85
2670 3078 3.526534 ACCACAACCCAAAATTGTTTCG 58.473 40.909 0.00 0.00 38.22 3.46
2684 3092 5.722021 ATTGTTTCGGGCTATTTTCAGTT 57.278 34.783 0.00 0.00 0.00 3.16
2690 3098 6.636562 TTCGGGCTATTTTCAGTTTAACAA 57.363 33.333 0.00 0.00 0.00 2.83
2691 3099 6.827586 TCGGGCTATTTTCAGTTTAACAAT 57.172 33.333 0.00 0.00 0.00 2.71
2706 3114 7.329226 CAGTTTAACAATCCAATACAGCCAAAG 59.671 37.037 0.00 0.00 0.00 2.77
2719 3127 2.354109 GCCAAAGCTGTTTTCCTAGC 57.646 50.000 0.00 0.00 40.18 3.42
2720 3128 1.067565 GCCAAAGCTGTTTTCCTAGCC 60.068 52.381 0.00 0.00 40.76 3.93
2721 3129 1.546029 CCAAAGCTGTTTTCCTAGCCC 59.454 52.381 0.00 0.00 40.76 5.19
2722 3130 1.546029 CAAAGCTGTTTTCCTAGCCCC 59.454 52.381 0.00 0.00 40.76 5.80
2723 3131 1.076438 AAGCTGTTTTCCTAGCCCCT 58.924 50.000 0.00 0.00 40.76 4.79
2724 3132 0.621082 AGCTGTTTTCCTAGCCCCTC 59.379 55.000 0.00 0.00 40.76 4.30
2725 3133 0.621082 GCTGTTTTCCTAGCCCCTCT 59.379 55.000 0.00 0.00 33.89 3.69
2726 3134 1.838077 GCTGTTTTCCTAGCCCCTCTA 59.162 52.381 0.00 0.00 33.89 2.43
2727 3135 2.420269 GCTGTTTTCCTAGCCCCTCTAC 60.420 54.545 0.00 0.00 33.89 2.59
2728 3136 2.170817 CTGTTTTCCTAGCCCCTCTACC 59.829 54.545 0.00 0.00 0.00 3.18
2729 3137 2.225805 TGTTTTCCTAGCCCCTCTACCT 60.226 50.000 0.00 0.00 0.00 3.08
2730 3138 2.844966 GTTTTCCTAGCCCCTCTACCTT 59.155 50.000 0.00 0.00 0.00 3.50
2731 3139 2.963654 TTCCTAGCCCCTCTACCTTT 57.036 50.000 0.00 0.00 0.00 3.11
2732 3140 2.176247 TCCTAGCCCCTCTACCTTTG 57.824 55.000 0.00 0.00 0.00 2.77
2733 3141 1.132500 CCTAGCCCCTCTACCTTTGG 58.868 60.000 0.00 0.00 0.00 3.28
2734 3142 1.625508 CCTAGCCCCTCTACCTTTGGT 60.626 57.143 0.00 0.00 40.16 3.67
2735 3143 1.486726 CTAGCCCCTCTACCTTTGGTG 59.513 57.143 0.00 0.00 36.19 4.17
2736 3144 0.475828 AGCCCCTCTACCTTTGGTGT 60.476 55.000 0.00 0.00 36.19 4.16
2737 3145 0.404426 GCCCCTCTACCTTTGGTGTT 59.596 55.000 0.00 0.00 36.19 3.32
2738 3146 1.203013 GCCCCTCTACCTTTGGTGTTT 60.203 52.381 0.00 0.00 36.19 2.83
2739 3147 2.514803 CCCCTCTACCTTTGGTGTTTG 58.485 52.381 0.00 0.00 36.19 2.93
2740 3148 2.514803 CCCTCTACCTTTGGTGTTTGG 58.485 52.381 0.00 0.00 36.19 3.28
2741 3149 2.158519 CCCTCTACCTTTGGTGTTTGGT 60.159 50.000 0.00 0.00 36.19 3.67
2742 3150 2.884639 CCTCTACCTTTGGTGTTTGGTG 59.115 50.000 0.00 0.00 36.19 4.17
2743 3151 2.884639 CTCTACCTTTGGTGTTTGGTGG 59.115 50.000 0.00 0.00 36.19 4.61
2744 3152 2.242708 TCTACCTTTGGTGTTTGGTGGT 59.757 45.455 0.00 0.00 36.19 4.16
2745 3153 2.830651 ACCTTTGGTGTTTGGTGGTA 57.169 45.000 0.00 0.00 32.98 3.25
2746 3154 3.103080 ACCTTTGGTGTTTGGTGGTAA 57.897 42.857 0.00 0.00 32.98 2.85
2747 3155 3.648739 ACCTTTGGTGTTTGGTGGTAAT 58.351 40.909 0.00 0.00 32.98 1.89
2748 3156 4.034410 ACCTTTGGTGTTTGGTGGTAATT 58.966 39.130 0.00 0.00 32.98 1.40
2749 3157 5.209659 ACCTTTGGTGTTTGGTGGTAATTA 58.790 37.500 0.00 0.00 32.98 1.40
2750 3158 5.841783 ACCTTTGGTGTTTGGTGGTAATTAT 59.158 36.000 0.00 0.00 32.98 1.28
2751 3159 6.162777 CCTTTGGTGTTTGGTGGTAATTATG 58.837 40.000 0.00 0.00 0.00 1.90
2752 3160 6.239458 CCTTTGGTGTTTGGTGGTAATTATGT 60.239 38.462 0.00 0.00 0.00 2.29
2753 3161 5.968528 TGGTGTTTGGTGGTAATTATGTC 57.031 39.130 0.00 0.00 0.00 3.06
2754 3162 5.386060 TGGTGTTTGGTGGTAATTATGTCA 58.614 37.500 0.00 0.00 0.00 3.58
2755 3163 6.013379 TGGTGTTTGGTGGTAATTATGTCAT 58.987 36.000 0.00 0.00 0.00 3.06
2756 3164 7.175797 TGGTGTTTGGTGGTAATTATGTCATA 58.824 34.615 0.00 0.00 0.00 2.15
2757 3165 7.670140 TGGTGTTTGGTGGTAATTATGTCATAA 59.330 33.333 7.72 7.72 0.00 1.90
2758 3166 8.524487 GGTGTTTGGTGGTAATTATGTCATAAA 58.476 33.333 9.31 0.00 0.00 1.40
2761 3169 9.030301 GTTTGGTGGTAATTATGTCATAAATGC 57.970 33.333 9.31 4.96 0.00 3.56
2762 3170 7.283625 TGGTGGTAATTATGTCATAAATGCC 57.716 36.000 16.76 16.76 32.86 4.40
2763 3171 6.836007 TGGTGGTAATTATGTCATAAATGCCA 59.164 34.615 20.50 20.50 37.84 4.92
2764 3172 7.508636 TGGTGGTAATTATGTCATAAATGCCAT 59.491 33.333 24.67 2.02 40.74 4.40
2765 3173 8.028938 GGTGGTAATTATGTCATAAATGCCATC 58.971 37.037 24.67 22.02 40.74 3.51
2766 3174 7.750458 GTGGTAATTATGTCATAAATGCCATCG 59.250 37.037 24.67 0.00 40.74 3.84
2767 3175 6.747280 GGTAATTATGTCATAAATGCCATCGC 59.253 38.462 18.05 0.00 32.61 4.58
2784 3192 3.560826 GCAGCACGACCTATCTCTC 57.439 57.895 0.00 0.00 0.00 3.20
2785 3193 0.031449 GCAGCACGACCTATCTCTCC 59.969 60.000 0.00 0.00 0.00 3.71
2786 3194 0.671251 CAGCACGACCTATCTCTCCC 59.329 60.000 0.00 0.00 0.00 4.30
2787 3195 0.553819 AGCACGACCTATCTCTCCCT 59.446 55.000 0.00 0.00 0.00 4.20
2788 3196 1.063567 AGCACGACCTATCTCTCCCTT 60.064 52.381 0.00 0.00 0.00 3.95
2789 3197 1.338655 GCACGACCTATCTCTCCCTTC 59.661 57.143 0.00 0.00 0.00 3.46
2790 3198 1.604755 CACGACCTATCTCTCCCTTCG 59.395 57.143 0.00 0.00 0.00 3.79
2791 3199 0.594110 CGACCTATCTCTCCCTTCGC 59.406 60.000 0.00 0.00 0.00 4.70
2792 3200 0.594110 GACCTATCTCTCCCTTCGCG 59.406 60.000 0.00 0.00 0.00 5.87
2793 3201 1.287503 CCTATCTCTCCCTTCGCGC 59.712 63.158 0.00 0.00 0.00 6.86
2794 3202 1.287503 CTATCTCTCCCTTCGCGCC 59.712 63.158 0.00 0.00 0.00 6.53
2795 3203 2.148558 CTATCTCTCCCTTCGCGCCC 62.149 65.000 0.00 0.00 0.00 6.13
2796 3204 2.642183 TATCTCTCCCTTCGCGCCCT 62.642 60.000 0.00 0.00 0.00 5.19
2797 3205 4.214327 CTCTCCCTTCGCGCCCTC 62.214 72.222 0.00 0.00 0.00 4.30
2798 3206 4.761058 TCTCCCTTCGCGCCCTCT 62.761 66.667 0.00 0.00 0.00 3.69
2799 3207 4.214327 CTCCCTTCGCGCCCTCTC 62.214 72.222 0.00 0.00 0.00 3.20
2800 3208 4.761058 TCCCTTCGCGCCCTCTCT 62.761 66.667 0.00 0.00 0.00 3.10
2801 3209 3.775654 CCCTTCGCGCCCTCTCTT 61.776 66.667 0.00 0.00 0.00 2.85
2802 3210 2.202810 CCTTCGCGCCCTCTCTTC 60.203 66.667 0.00 0.00 0.00 2.87
2803 3211 2.202810 CTTCGCGCCCTCTCTTCC 60.203 66.667 0.00 0.00 0.00 3.46
2804 3212 2.680352 TTCGCGCCCTCTCTTCCT 60.680 61.111 0.00 0.00 0.00 3.36
2805 3213 2.897641 CTTCGCGCCCTCTCTTCCTG 62.898 65.000 0.00 0.00 0.00 3.86
2806 3214 3.452786 CGCGCCCTCTCTTCCTGA 61.453 66.667 0.00 0.00 0.00 3.86
2807 3215 2.982130 GCGCCCTCTCTTCCTGAA 59.018 61.111 0.00 0.00 0.00 3.02
2808 3216 1.296715 GCGCCCTCTCTTCCTGAAA 59.703 57.895 0.00 0.00 0.00 2.69
2809 3217 1.021920 GCGCCCTCTCTTCCTGAAAC 61.022 60.000 0.00 0.00 0.00 2.78
2810 3218 0.321671 CGCCCTCTCTTCCTGAAACA 59.678 55.000 0.00 0.00 0.00 2.83
2811 3219 1.065854 CGCCCTCTCTTCCTGAAACAT 60.066 52.381 0.00 0.00 0.00 2.71
2812 3220 2.168521 CGCCCTCTCTTCCTGAAACATA 59.831 50.000 0.00 0.00 0.00 2.29
2813 3221 3.739519 CGCCCTCTCTTCCTGAAACATAG 60.740 52.174 0.00 0.00 0.00 2.23
2814 3222 3.802866 CCCTCTCTTCCTGAAACATAGC 58.197 50.000 0.00 0.00 0.00 2.97
2815 3223 3.452474 CCTCTCTTCCTGAAACATAGCG 58.548 50.000 0.00 0.00 0.00 4.26
2816 3224 3.118956 CCTCTCTTCCTGAAACATAGCGT 60.119 47.826 0.00 0.00 0.00 5.07
2817 3225 4.499183 CTCTCTTCCTGAAACATAGCGTT 58.501 43.478 0.00 0.00 40.50 4.84
2826 3234 2.989422 AACATAGCGTTTTCACCAGC 57.011 45.000 0.00 0.00 32.35 4.85
2827 3235 2.185004 ACATAGCGTTTTCACCAGCT 57.815 45.000 0.00 0.00 43.07 4.24
2828 3236 2.076863 ACATAGCGTTTTCACCAGCTC 58.923 47.619 0.00 0.00 40.73 4.09
2829 3237 2.076100 CATAGCGTTTTCACCAGCTCA 58.924 47.619 0.00 0.00 40.73 4.26
2830 3238 2.472695 TAGCGTTTTCACCAGCTCAT 57.527 45.000 0.00 0.00 40.73 2.90
2831 3239 2.472695 AGCGTTTTCACCAGCTCATA 57.527 45.000 0.00 0.00 34.48 2.15
2832 3240 2.350522 AGCGTTTTCACCAGCTCATAG 58.649 47.619 0.00 0.00 34.48 2.23
2833 3241 2.076863 GCGTTTTCACCAGCTCATAGT 58.923 47.619 0.00 0.00 0.00 2.12
2834 3242 2.484264 GCGTTTTCACCAGCTCATAGTT 59.516 45.455 0.00 0.00 0.00 2.24
2835 3243 3.667960 GCGTTTTCACCAGCTCATAGTTG 60.668 47.826 0.00 0.00 0.00 3.16
2836 3244 3.498397 CGTTTTCACCAGCTCATAGTTGT 59.502 43.478 0.00 0.00 0.00 3.32
2837 3245 4.611355 CGTTTTCACCAGCTCATAGTTGTG 60.611 45.833 0.00 0.00 0.00 3.33
2838 3246 3.769739 TTCACCAGCTCATAGTTGTGT 57.230 42.857 0.00 0.00 0.00 3.72
2839 3247 3.319137 TCACCAGCTCATAGTTGTGTC 57.681 47.619 0.00 0.00 0.00 3.67
2840 3248 2.028112 TCACCAGCTCATAGTTGTGTCC 60.028 50.000 0.00 0.00 0.00 4.02
2841 3249 1.977854 ACCAGCTCATAGTTGTGTCCA 59.022 47.619 0.00 0.00 0.00 4.02
2842 3250 2.289694 ACCAGCTCATAGTTGTGTCCAC 60.290 50.000 0.00 0.00 0.00 4.02
2843 3251 2.289631 CCAGCTCATAGTTGTGTCCACA 60.290 50.000 0.00 0.00 39.98 4.17
2844 3252 2.998670 CAGCTCATAGTTGTGTCCACAG 59.001 50.000 0.00 0.00 42.94 3.66
2845 3253 1.734465 GCTCATAGTTGTGTCCACAGC 59.266 52.381 6.19 6.19 42.94 4.40
2851 3259 2.977405 GTTGTGTCCACAGCTGAATC 57.023 50.000 23.35 8.25 42.94 2.52
2852 3260 1.537202 GTTGTGTCCACAGCTGAATCC 59.463 52.381 23.35 6.00 42.94 3.01
2853 3261 0.320683 TGTGTCCACAGCTGAATCCG 60.321 55.000 23.35 2.82 36.21 4.18
2854 3262 0.320771 GTGTCCACAGCTGAATCCGT 60.321 55.000 23.35 0.00 0.00 4.69
2855 3263 0.037326 TGTCCACAGCTGAATCCGTC 60.037 55.000 23.35 4.54 0.00 4.79
2856 3264 1.078759 GTCCACAGCTGAATCCGTCG 61.079 60.000 23.35 0.00 0.00 5.12
2857 3265 1.215382 CCACAGCTGAATCCGTCGA 59.785 57.895 23.35 0.00 0.00 4.20
2858 3266 0.389817 CCACAGCTGAATCCGTCGAA 60.390 55.000 23.35 0.00 0.00 3.71
2859 3267 1.428448 CACAGCTGAATCCGTCGAAA 58.572 50.000 23.35 0.00 0.00 3.46
2860 3268 1.126846 CACAGCTGAATCCGTCGAAAC 59.873 52.381 23.35 0.00 0.00 2.78
2861 3269 1.000955 ACAGCTGAATCCGTCGAAACT 59.999 47.619 23.35 0.00 0.00 2.66
2862 3270 2.230508 ACAGCTGAATCCGTCGAAACTA 59.769 45.455 23.35 0.00 0.00 2.24
2863 3271 3.250744 CAGCTGAATCCGTCGAAACTAA 58.749 45.455 8.42 0.00 0.00 2.24
2864 3272 3.678072 CAGCTGAATCCGTCGAAACTAAA 59.322 43.478 8.42 0.00 0.00 1.85
2865 3273 3.927142 AGCTGAATCCGTCGAAACTAAAG 59.073 43.478 0.00 0.00 0.00 1.85
2866 3274 3.483738 GCTGAATCCGTCGAAACTAAAGC 60.484 47.826 0.00 0.00 0.00 3.51
2867 3275 2.997986 TGAATCCGTCGAAACTAAAGCC 59.002 45.455 0.00 0.00 0.00 4.35
2868 3276 2.019948 ATCCGTCGAAACTAAAGCCC 57.980 50.000 0.00 0.00 0.00 5.19
2869 3277 0.680618 TCCGTCGAAACTAAAGCCCA 59.319 50.000 0.00 0.00 0.00 5.36
2870 3278 1.070445 TCCGTCGAAACTAAAGCCCAA 59.930 47.619 0.00 0.00 0.00 4.12
2871 3279 1.874872 CCGTCGAAACTAAAGCCCAAA 59.125 47.619 0.00 0.00 0.00 3.28
2872 3280 2.350102 CCGTCGAAACTAAAGCCCAAAC 60.350 50.000 0.00 0.00 0.00 2.93
2873 3281 2.288458 CGTCGAAACTAAAGCCCAAACA 59.712 45.455 0.00 0.00 0.00 2.83
2874 3282 3.242804 CGTCGAAACTAAAGCCCAAACAA 60.243 43.478 0.00 0.00 0.00 2.83
2875 3283 4.287720 GTCGAAACTAAAGCCCAAACAAG 58.712 43.478 0.00 0.00 0.00 3.16
2876 3284 3.049912 CGAAACTAAAGCCCAAACAAGC 58.950 45.455 0.00 0.00 0.00 4.01
2877 3285 3.490078 CGAAACTAAAGCCCAAACAAGCA 60.490 43.478 0.00 0.00 0.00 3.91
2878 3286 3.452755 AACTAAAGCCCAAACAAGCAC 57.547 42.857 0.00 0.00 0.00 4.40
2879 3287 1.336755 ACTAAAGCCCAAACAAGCACG 59.663 47.619 0.00 0.00 0.00 5.34
2880 3288 0.671251 TAAAGCCCAAACAAGCACGG 59.329 50.000 0.00 0.00 0.00 4.94
2881 3289 2.642996 AAAGCCCAAACAAGCACGGC 62.643 55.000 0.00 0.00 40.03 5.68
2882 3290 4.662961 GCCCAAACAAGCACGGCC 62.663 66.667 0.00 0.00 33.30 6.13
2883 3291 2.912025 CCCAAACAAGCACGGCCT 60.912 61.111 0.00 0.00 0.00 5.19
2884 3292 1.602323 CCCAAACAAGCACGGCCTA 60.602 57.895 0.00 0.00 0.00 3.93
2885 3293 0.965363 CCCAAACAAGCACGGCCTAT 60.965 55.000 0.00 0.00 0.00 2.57
2886 3294 1.680555 CCCAAACAAGCACGGCCTATA 60.681 52.381 0.00 0.00 0.00 1.31
2887 3295 2.297701 CCAAACAAGCACGGCCTATAT 58.702 47.619 0.00 0.00 0.00 0.86
2888 3296 2.033299 CCAAACAAGCACGGCCTATATG 59.967 50.000 0.00 0.00 0.00 1.78
2889 3297 1.308998 AACAAGCACGGCCTATATGC 58.691 50.000 0.00 5.56 39.74 3.14
2890 3298 0.180171 ACAAGCACGGCCTATATGCA 59.820 50.000 17.18 0.00 41.97 3.96
2891 3299 0.588252 CAAGCACGGCCTATATGCAC 59.412 55.000 17.18 0.00 41.97 4.57
2892 3300 0.469917 AAGCACGGCCTATATGCACT 59.530 50.000 17.18 4.59 41.97 4.40
2893 3301 0.469917 AGCACGGCCTATATGCACTT 59.530 50.000 17.18 0.00 41.97 3.16
2894 3302 0.868406 GCACGGCCTATATGCACTTC 59.132 55.000 0.00 0.00 39.23 3.01
2895 3303 1.810031 GCACGGCCTATATGCACTTCA 60.810 52.381 0.00 0.00 39.23 3.02
2896 3304 2.560504 CACGGCCTATATGCACTTCAA 58.439 47.619 0.00 0.00 0.00 2.69
2897 3305 2.545526 CACGGCCTATATGCACTTCAAG 59.454 50.000 0.00 0.00 0.00 3.02
2898 3306 2.146342 CGGCCTATATGCACTTCAAGG 58.854 52.381 0.00 0.00 0.00 3.61
2899 3307 2.485479 CGGCCTATATGCACTTCAAGGT 60.485 50.000 0.00 0.00 0.00 3.50
2900 3308 2.880890 GGCCTATATGCACTTCAAGGTG 59.119 50.000 0.00 0.00 39.91 4.00
2907 3315 1.654220 CACTTCAAGGTGCAACGGG 59.346 57.895 0.00 0.00 38.12 5.28
2908 3316 0.817634 CACTTCAAGGTGCAACGGGA 60.818 55.000 0.00 0.00 38.12 5.14
2909 3317 0.818040 ACTTCAAGGTGCAACGGGAC 60.818 55.000 0.00 0.00 38.12 4.46
2910 3318 0.817634 CTTCAAGGTGCAACGGGACA 60.818 55.000 0.00 0.00 38.12 4.02
2911 3319 1.098712 TTCAAGGTGCAACGGGACAC 61.099 55.000 0.00 0.00 38.12 3.67
2912 3320 1.821759 CAAGGTGCAACGGGACACA 60.822 57.895 0.00 0.00 38.57 3.72
2913 3321 1.822186 AAGGTGCAACGGGACACAC 60.822 57.895 0.00 0.00 38.57 3.82
2914 3322 2.515057 GGTGCAACGGGACACACA 60.515 61.111 0.00 0.00 38.57 3.72
2915 3323 2.115911 GGTGCAACGGGACACACAA 61.116 57.895 0.00 0.00 38.57 3.33
2916 3324 1.063488 GTGCAACGGGACACACAAC 59.937 57.895 0.00 0.00 36.77 3.32
2917 3325 1.377333 TGCAACGGGACACACAACA 60.377 52.632 0.00 0.00 0.00 3.33
2918 3326 1.063488 GCAACGGGACACACAACAC 59.937 57.895 0.00 0.00 0.00 3.32
2919 3327 1.649390 GCAACGGGACACACAACACA 61.649 55.000 0.00 0.00 0.00 3.72
2920 3328 0.805614 CAACGGGACACACAACACAA 59.194 50.000 0.00 0.00 0.00 3.33
2921 3329 0.806241 AACGGGACACACAACACAAC 59.194 50.000 0.00 0.00 0.00 3.32
2922 3330 1.350319 CGGGACACACAACACAACG 59.650 57.895 0.00 0.00 0.00 4.10
2923 3331 1.725066 GGGACACACAACACAACGG 59.275 57.895 0.00 0.00 0.00 4.44
2924 3332 1.720694 GGGACACACAACACAACGGG 61.721 60.000 0.00 0.00 0.00 5.28
2925 3333 1.063488 GACACACAACACAACGGGC 59.937 57.895 0.00 0.00 0.00 6.13
2926 3334 1.373590 GACACACAACACAACGGGCT 61.374 55.000 0.00 0.00 0.00 5.19
2927 3335 0.963355 ACACACAACACAACGGGCTT 60.963 50.000 0.00 0.00 0.00 4.35
2928 3336 0.248458 CACACAACACAACGGGCTTC 60.248 55.000 0.00 0.00 0.00 3.86
2929 3337 0.678366 ACACAACACAACGGGCTTCA 60.678 50.000 0.00 0.00 0.00 3.02
2930 3338 0.248458 CACAACACAACGGGCTTCAC 60.248 55.000 0.00 0.00 0.00 3.18
2931 3339 0.678366 ACAACACAACGGGCTTCACA 60.678 50.000 0.00 0.00 0.00 3.58
2932 3340 0.453793 CAACACAACGGGCTTCACAA 59.546 50.000 0.00 0.00 0.00 3.33
2933 3341 0.738389 AACACAACGGGCTTCACAAG 59.262 50.000 0.00 0.00 0.00 3.16
2934 3342 0.393808 ACACAACGGGCTTCACAAGT 60.394 50.000 0.00 0.00 0.00 3.16
2935 3343 0.738389 CACAACGGGCTTCACAAGTT 59.262 50.000 0.00 0.00 0.00 2.66
2936 3344 0.738389 ACAACGGGCTTCACAAGTTG 59.262 50.000 0.00 0.00 45.25 3.16
2937 3345 0.594796 CAACGGGCTTCACAAGTTGC 60.595 55.000 1.81 0.00 36.27 4.17
2938 3346 0.751643 AACGGGCTTCACAAGTTGCT 60.752 50.000 1.81 0.00 0.00 3.91
2939 3347 0.751643 ACGGGCTTCACAAGTTGCTT 60.752 50.000 1.81 0.00 0.00 3.91
2940 3348 0.040067 CGGGCTTCACAAGTTGCTTC 60.040 55.000 1.81 0.00 0.00 3.86
2941 3349 1.032014 GGGCTTCACAAGTTGCTTCA 58.968 50.000 1.81 0.00 0.00 3.02
2942 3350 1.615392 GGGCTTCACAAGTTGCTTCAT 59.385 47.619 1.81 0.00 0.00 2.57
2943 3351 2.036346 GGGCTTCACAAGTTGCTTCATT 59.964 45.455 1.81 0.00 0.00 2.57
2944 3352 3.311966 GGCTTCACAAGTTGCTTCATTC 58.688 45.455 1.81 0.00 0.00 2.67
2945 3353 3.005155 GGCTTCACAAGTTGCTTCATTCT 59.995 43.478 1.81 0.00 0.00 2.40
2946 3354 4.500375 GGCTTCACAAGTTGCTTCATTCTT 60.500 41.667 1.81 0.00 0.00 2.52
2947 3355 4.678742 GCTTCACAAGTTGCTTCATTCTTC 59.321 41.667 1.81 0.00 0.00 2.87
2948 3356 5.506982 GCTTCACAAGTTGCTTCATTCTTCT 60.507 40.000 1.81 0.00 0.00 2.85
2949 3357 6.293626 GCTTCACAAGTTGCTTCATTCTTCTA 60.294 38.462 1.81 0.00 0.00 2.10
2950 3358 7.566760 TTCACAAGTTGCTTCATTCTTCTAA 57.433 32.000 1.81 0.00 0.00 2.10
2951 3359 6.959361 TCACAAGTTGCTTCATTCTTCTAAC 58.041 36.000 1.81 0.00 0.00 2.34
2952 3360 6.017109 TCACAAGTTGCTTCATTCTTCTAACC 60.017 38.462 1.81 0.00 0.00 2.85
2953 3361 6.016777 CACAAGTTGCTTCATTCTTCTAACCT 60.017 38.462 1.81 0.00 0.00 3.50
2954 3362 7.173218 CACAAGTTGCTTCATTCTTCTAACCTA 59.827 37.037 1.81 0.00 0.00 3.08
2955 3363 7.885399 ACAAGTTGCTTCATTCTTCTAACCTAT 59.115 33.333 1.81 0.00 0.00 2.57
2956 3364 8.734386 CAAGTTGCTTCATTCTTCTAACCTATT 58.266 33.333 0.00 0.00 0.00 1.73
2957 3365 9.959721 AAGTTGCTTCATTCTTCTAACCTATTA 57.040 29.630 0.00 0.00 0.00 0.98
2958 3366 9.384764 AGTTGCTTCATTCTTCTAACCTATTAC 57.615 33.333 0.00 0.00 0.00 1.89
2959 3367 8.613482 GTTGCTTCATTCTTCTAACCTATTACC 58.387 37.037 0.00 0.00 0.00 2.85
2960 3368 7.857456 TGCTTCATTCTTCTAACCTATTACCA 58.143 34.615 0.00 0.00 0.00 3.25
2961 3369 8.494433 TGCTTCATTCTTCTAACCTATTACCAT 58.506 33.333 0.00 0.00 0.00 3.55
2962 3370 8.778358 GCTTCATTCTTCTAACCTATTACCATG 58.222 37.037 0.00 0.00 0.00 3.66
2963 3371 9.838339 CTTCATTCTTCTAACCTATTACCATGT 57.162 33.333 0.00 0.00 0.00 3.21
2964 3372 9.832445 TTCATTCTTCTAACCTATTACCATGTC 57.168 33.333 0.00 0.00 0.00 3.06
2965 3373 8.429641 TCATTCTTCTAACCTATTACCATGTCC 58.570 37.037 0.00 0.00 0.00 4.02
2966 3374 7.989947 TTCTTCTAACCTATTACCATGTCCT 57.010 36.000 0.00 0.00 0.00 3.85
2967 3375 7.361457 TCTTCTAACCTATTACCATGTCCTG 57.639 40.000 0.00 0.00 0.00 3.86
2979 3387 3.222603 CCATGTCCTGGTTTATTAGCCC 58.777 50.000 0.00 0.00 40.49 5.19
2980 3388 3.222603 CATGTCCTGGTTTATTAGCCCC 58.777 50.000 0.00 0.00 0.00 5.80
2981 3389 1.567175 TGTCCTGGTTTATTAGCCCCC 59.433 52.381 0.00 0.00 0.00 5.40
2982 3390 1.850998 GTCCTGGTTTATTAGCCCCCT 59.149 52.381 0.00 0.00 0.00 4.79
2983 3391 2.243994 GTCCTGGTTTATTAGCCCCCTT 59.756 50.000 0.00 0.00 0.00 3.95
2984 3392 2.243736 TCCTGGTTTATTAGCCCCCTTG 59.756 50.000 0.00 0.00 0.00 3.61
2985 3393 2.024369 CCTGGTTTATTAGCCCCCTTGT 60.024 50.000 0.00 0.00 0.00 3.16
2986 3394 3.203487 CCTGGTTTATTAGCCCCCTTGTA 59.797 47.826 0.00 0.00 0.00 2.41
2987 3395 4.141018 CCTGGTTTATTAGCCCCCTTGTAT 60.141 45.833 0.00 0.00 0.00 2.29
2988 3396 5.454966 CTGGTTTATTAGCCCCCTTGTATT 58.545 41.667 0.00 0.00 0.00 1.89
2989 3397 5.844601 TGGTTTATTAGCCCCCTTGTATTT 58.155 37.500 0.00 0.00 0.00 1.40
2990 3398 5.894964 TGGTTTATTAGCCCCCTTGTATTTC 59.105 40.000 0.00 0.00 0.00 2.17
2991 3399 5.009310 GGTTTATTAGCCCCCTTGTATTTCG 59.991 44.000 0.00 0.00 0.00 3.46
2992 3400 2.721425 TTAGCCCCCTTGTATTTCGG 57.279 50.000 0.00 0.00 0.00 4.30
2993 3401 0.841289 TAGCCCCCTTGTATTTCGGG 59.159 55.000 0.00 0.00 37.73 5.14
2994 3402 1.212250 AGCCCCCTTGTATTTCGGGT 61.212 55.000 0.00 0.00 36.18 5.28
2995 3403 0.323999 GCCCCCTTGTATTTCGGGTT 60.324 55.000 0.00 0.00 36.18 4.11
2996 3404 1.064537 GCCCCCTTGTATTTCGGGTTA 60.065 52.381 0.00 0.00 36.18 2.85
2997 3405 2.423803 GCCCCCTTGTATTTCGGGTTAT 60.424 50.000 0.00 0.00 36.18 1.89
2998 3406 3.181441 GCCCCCTTGTATTTCGGGTTATA 60.181 47.826 0.00 0.00 36.18 0.98
2999 3407 4.507869 GCCCCCTTGTATTTCGGGTTATAT 60.508 45.833 0.00 0.00 36.18 0.86
3000 3408 5.637127 CCCCCTTGTATTTCGGGTTATATT 58.363 41.667 0.00 0.00 36.18 1.28
3001 3409 6.072649 CCCCCTTGTATTTCGGGTTATATTT 58.927 40.000 0.00 0.00 36.18 1.40
3002 3410 6.551975 CCCCCTTGTATTTCGGGTTATATTTT 59.448 38.462 0.00 0.00 36.18 1.82
3003 3411 7.430441 CCCCTTGTATTTCGGGTTATATTTTG 58.570 38.462 0.00 0.00 36.18 2.44
3004 3412 7.285858 CCCCTTGTATTTCGGGTTATATTTTGA 59.714 37.037 0.00 0.00 36.18 2.69
3005 3413 8.132995 CCCTTGTATTTCGGGTTATATTTTGAC 58.867 37.037 0.00 0.00 33.16 3.18
3006 3414 8.132995 CCTTGTATTTCGGGTTATATTTTGACC 58.867 37.037 0.00 0.00 0.00 4.02
3007 3415 8.577048 TTGTATTTCGGGTTATATTTTGACCA 57.423 30.769 0.00 0.00 35.11 4.02
3008 3416 8.754991 TGTATTTCGGGTTATATTTTGACCAT 57.245 30.769 0.00 0.00 35.11 3.55
3009 3417 9.848710 TGTATTTCGGGTTATATTTTGACCATA 57.151 29.630 0.00 0.00 35.11 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.157668 CGGTAATCATAAGCGCATCCAC 59.842 50.000 11.47 0.00 0.00 4.02
37 38 0.525668 AGAAGATAAGCGACGCACGG 60.526 55.000 23.70 0.00 42.83 4.94
42 43 4.230657 CCCTATGAAGAAGATAAGCGACG 58.769 47.826 0.00 0.00 0.00 5.12
59 60 2.111878 GCCGACATGCAGCCCTAT 59.888 61.111 0.00 0.00 0.00 2.57
121 125 2.577700 ACAATACACTCACGCCCAAAA 58.422 42.857 0.00 0.00 0.00 2.44
148 152 1.525619 GATACAGCAAATACGACGGCC 59.474 52.381 0.00 0.00 0.00 6.13
164 168 9.120538 ACCATACAACCAACATCTAAATGATAC 57.879 33.333 0.00 0.00 36.67 2.24
166 170 8.469200 CAACCATACAACCAACATCTAAATGAT 58.531 33.333 0.00 0.00 36.67 2.45
167 171 7.093988 CCAACCATACAACCAACATCTAAATGA 60.094 37.037 0.00 0.00 36.67 2.57
173 177 4.112634 ACCAACCATACAACCAACATCT 57.887 40.909 0.00 0.00 0.00 2.90
186 190 8.598041 TGCTTTATAAATAAACCAACCAACCAT 58.402 29.630 0.00 0.00 0.00 3.55
187 191 7.963532 TGCTTTATAAATAAACCAACCAACCA 58.036 30.769 0.00 0.00 0.00 3.67
188 192 7.547722 CCTGCTTTATAAATAAACCAACCAACC 59.452 37.037 0.00 0.00 0.00 3.77
189 193 7.547722 CCCTGCTTTATAAATAAACCAACCAAC 59.452 37.037 0.00 0.00 0.00 3.77
190 194 7.235812 ACCCTGCTTTATAAATAAACCAACCAA 59.764 33.333 0.00 0.00 0.00 3.67
191 195 6.726764 ACCCTGCTTTATAAATAAACCAACCA 59.273 34.615 0.00 0.00 0.00 3.67
192 196 7.039270 CACCCTGCTTTATAAATAAACCAACC 58.961 38.462 0.00 0.00 0.00 3.77
193 197 7.832769 TCACCCTGCTTTATAAATAAACCAAC 58.167 34.615 0.00 0.00 0.00 3.77
194 198 8.423906 TTCACCCTGCTTTATAAATAAACCAA 57.576 30.769 0.00 0.00 0.00 3.67
195 199 8.423906 TTTCACCCTGCTTTATAAATAAACCA 57.576 30.769 0.00 0.00 0.00 3.67
196 200 7.491372 GCTTTCACCCTGCTTTATAAATAAACC 59.509 37.037 0.00 0.00 0.00 3.27
250 254 1.349357 GAGGGAGAAAGAACTGGTGCT 59.651 52.381 0.00 0.00 0.00 4.40
251 255 1.814793 GAGGGAGAAAGAACTGGTGC 58.185 55.000 0.00 0.00 0.00 5.01
298 302 1.676967 GCAAGCAAGGACAGGGGAG 60.677 63.158 0.00 0.00 0.00 4.30
299 303 2.436109 GCAAGCAAGGACAGGGGA 59.564 61.111 0.00 0.00 0.00 4.81
300 304 2.677875 GGCAAGCAAGGACAGGGG 60.678 66.667 0.00 0.00 0.00 4.79
301 305 2.115910 TGGCAAGCAAGGACAGGG 59.884 61.111 0.00 0.00 0.00 4.45
303 307 2.620112 CGGTGGCAAGCAAGGACAG 61.620 63.158 0.00 0.00 0.00 3.51
304 308 2.594303 CGGTGGCAAGCAAGGACA 60.594 61.111 0.00 0.00 0.00 4.02
305 309 4.043200 GCGGTGGCAAGCAAGGAC 62.043 66.667 10.78 0.00 39.62 3.85
319 323 2.373338 TAGAGAGATGGGAGGGGCGG 62.373 65.000 0.00 0.00 0.00 6.13
389 684 2.054799 TCTAGTTCACCCCAAGCTTGT 58.945 47.619 24.35 3.84 0.00 3.16
425 720 4.606961 TCACGTGCCTGAAAATTTTCTTC 58.393 39.130 26.73 17.21 38.02 2.87
436 731 2.661718 TGGTATATCTCACGTGCCTGA 58.338 47.619 11.67 9.34 0.00 3.86
444 739 8.441312 TTTTATCCGGTTTTGGTATATCTCAC 57.559 34.615 0.00 0.00 0.00 3.51
503 798 1.525077 TGACAACAACGCACCTCCC 60.525 57.895 0.00 0.00 0.00 4.30
512 807 2.351888 GCCACGCGTGACAACAAC 60.352 61.111 39.10 15.36 0.00 3.32
556 859 3.682858 AGTTCCGTTGTCCATATCGTTTG 59.317 43.478 0.00 0.00 0.00 2.93
561 864 2.030457 CGCAAGTTCCGTTGTCCATATC 59.970 50.000 0.00 0.00 0.00 1.63
639 949 9.708092 GTACTAGTTGGAAGAGAAAACAAGTAT 57.292 33.333 0.00 0.00 30.83 2.12
659 972 6.291322 CGTGATTTGATCTTTGCGAGTACTAG 60.291 42.308 0.00 0.00 0.00 2.57
663 976 3.616821 CCGTGATTTGATCTTTGCGAGTA 59.383 43.478 0.00 0.00 0.00 2.59
664 977 2.416547 CCGTGATTTGATCTTTGCGAGT 59.583 45.455 0.00 0.00 0.00 4.18
665 978 2.789092 GCCGTGATTTGATCTTTGCGAG 60.789 50.000 0.00 0.00 0.00 5.03
666 979 1.130373 GCCGTGATTTGATCTTTGCGA 59.870 47.619 0.00 0.00 0.00 5.10
667 980 1.538276 GCCGTGATTTGATCTTTGCG 58.462 50.000 0.00 0.00 0.00 4.85
668 981 1.135689 ACGCCGTGATTTGATCTTTGC 60.136 47.619 0.00 0.00 0.00 3.68
770 1093 2.289547 CTGTCAACGGAAAACGGTTGAT 59.710 45.455 19.93 0.00 41.94 2.57
839 1185 1.987807 AATCTGGCATCTGGGACGGG 61.988 60.000 0.00 0.00 33.92 5.28
990 1357 3.781307 TCGGGTGGGATGGAAGCG 61.781 66.667 0.00 0.00 0.00 4.68
991 1358 2.124695 GTCGGGTGGGATGGAAGC 60.125 66.667 0.00 0.00 0.00 3.86
992 1359 2.590092 GGTCGGGTGGGATGGAAG 59.410 66.667 0.00 0.00 0.00 3.46
1914 2299 6.937465 AGAAAAGGAATTACAGTTCTCCTCAC 59.063 38.462 1.03 0.00 37.31 3.51
1975 2360 2.514458 TCCAAAGGAAGGGAATCAGC 57.486 50.000 0.00 0.00 0.00 4.26
2076 2462 4.785301 ACATGTATGGGATCACTTCAAGG 58.215 43.478 0.00 0.00 0.00 3.61
2093 2479 2.851263 TTTTAGTCTGCGGGACATGT 57.149 45.000 0.00 0.00 46.72 3.21
2094 2480 4.414852 CAATTTTTAGTCTGCGGGACATG 58.585 43.478 11.31 0.00 46.72 3.21
2097 2483 3.078837 TCCAATTTTTAGTCTGCGGGAC 58.921 45.455 0.00 0.00 44.80 4.46
2126 2520 2.222445 ACGAAGTTGCGCGACTATTTTT 59.778 40.909 29.99 14.67 37.78 1.94
2127 2521 1.796459 ACGAAGTTGCGCGACTATTTT 59.204 42.857 29.99 15.07 37.78 1.82
2128 2522 1.425412 ACGAAGTTGCGCGACTATTT 58.575 45.000 29.99 15.46 37.78 1.40
2162 2556 2.771089 TCTGAAGCTGCACTACCAAAG 58.229 47.619 1.02 0.00 0.00 2.77
2219 2613 1.978580 AGGTCCAACCATTCTCGTTCT 59.021 47.619 0.00 0.00 41.95 3.01
2286 2681 8.697507 AGACATACTGATGTACTGATGACATA 57.302 34.615 0.00 0.00 46.64 2.29
2300 2695 9.553064 GGAGATTGACATTTTAGACATACTGAT 57.447 33.333 0.00 0.00 0.00 2.90
2301 2696 8.539544 TGGAGATTGACATTTTAGACATACTGA 58.460 33.333 0.00 0.00 0.00 3.41
2302 2697 8.722480 TGGAGATTGACATTTTAGACATACTG 57.278 34.615 0.00 0.00 0.00 2.74
2305 2700 9.958180 TCTTTGGAGATTGACATTTTAGACATA 57.042 29.630 0.00 0.00 0.00 2.29
2306 2701 8.868522 TCTTTGGAGATTGACATTTTAGACAT 57.131 30.769 0.00 0.00 0.00 3.06
2315 2722 7.884877 TCATACAAGTTCTTTGGAGATTGACAT 59.115 33.333 0.00 0.00 41.25 3.06
2382 2789 9.361315 GTGTTTTTGATTTAGTACAACTTTGGT 57.639 29.630 0.00 0.00 0.00 3.67
2405 2812 6.365520 ACTTTCTCTGTCCCAAAATAAGTGT 58.634 36.000 0.00 0.00 0.00 3.55
2417 2824 7.606456 TGGTATTGAAATGTACTTTCTCTGTCC 59.394 37.037 14.65 11.71 43.14 4.02
2469 2876 2.101917 GGAATCGTCCGGGTTCTCAATA 59.898 50.000 0.00 0.00 33.05 1.90
2481 2888 3.797039 TGATCATGAACTGGAATCGTCC 58.203 45.455 0.00 0.00 45.21 4.79
2534 2941 8.691661 AGTATGCAACTTTCCTTTTTCTTCTA 57.308 30.769 0.00 0.00 33.35 2.10
2546 2953 3.316308 CAGGGCCATAGTATGCAACTTTC 59.684 47.826 6.18 0.00 39.80 2.62
2553 2960 2.654863 ACAAACAGGGCCATAGTATGC 58.345 47.619 6.18 0.81 0.00 3.14
2586 2993 3.535280 TTTCCAAGTCCAAAAACAGCC 57.465 42.857 0.00 0.00 0.00 4.85
2670 3078 6.930731 TGGATTGTTAAACTGAAAATAGCCC 58.069 36.000 0.00 0.00 0.00 5.19
2684 3092 5.719173 GCTTTGGCTGTATTGGATTGTTAA 58.281 37.500 0.00 0.00 35.22 2.01
2706 3114 0.621082 AGAGGGGCTAGGAAAACAGC 59.379 55.000 0.00 0.00 37.05 4.40
2719 3127 2.514803 CAAACACCAAAGGTAGAGGGG 58.485 52.381 0.00 0.00 32.11 4.79
2720 3128 2.158519 ACCAAACACCAAAGGTAGAGGG 60.159 50.000 0.00 0.00 32.11 4.30
2721 3129 2.884639 CACCAAACACCAAAGGTAGAGG 59.115 50.000 0.00 0.00 32.11 3.69
2722 3130 2.884639 CCACCAAACACCAAAGGTAGAG 59.115 50.000 0.00 0.00 32.11 2.43
2723 3131 2.242708 ACCACCAAACACCAAAGGTAGA 59.757 45.455 0.00 0.00 32.11 2.59
2724 3132 2.661718 ACCACCAAACACCAAAGGTAG 58.338 47.619 0.00 0.00 32.11 3.18
2725 3133 2.830651 ACCACCAAACACCAAAGGTA 57.169 45.000 0.00 0.00 32.11 3.08
2726 3134 2.830651 TACCACCAAACACCAAAGGT 57.169 45.000 0.00 0.00 35.62 3.50
2727 3135 4.681074 AATTACCACCAAACACCAAAGG 57.319 40.909 0.00 0.00 0.00 3.11
2728 3136 6.754193 ACATAATTACCACCAAACACCAAAG 58.246 36.000 0.00 0.00 0.00 2.77
2729 3137 6.323996 TGACATAATTACCACCAAACACCAAA 59.676 34.615 0.00 0.00 0.00 3.28
2730 3138 5.833667 TGACATAATTACCACCAAACACCAA 59.166 36.000 0.00 0.00 0.00 3.67
2731 3139 5.386060 TGACATAATTACCACCAAACACCA 58.614 37.500 0.00 0.00 0.00 4.17
2732 3140 5.968528 TGACATAATTACCACCAAACACC 57.031 39.130 0.00 0.00 0.00 4.16
2735 3143 9.030301 GCATTTATGACATAATTACCACCAAAC 57.970 33.333 8.69 0.00 0.00 2.93
2736 3144 8.200792 GGCATTTATGACATAATTACCACCAAA 58.799 33.333 8.69 0.00 35.34 3.28
2737 3145 7.343057 TGGCATTTATGACATAATTACCACCAA 59.657 33.333 14.20 0.00 41.84 3.67
2738 3146 6.836007 TGGCATTTATGACATAATTACCACCA 59.164 34.615 14.20 10.96 41.84 4.17
2739 3147 7.283625 TGGCATTTATGACATAATTACCACC 57.716 36.000 14.20 9.20 41.84 4.61
2765 3173 0.317436 GAGAGATAGGTCGTGCTGCG 60.317 60.000 0.00 0.00 43.01 5.18
2766 3174 0.031449 GGAGAGATAGGTCGTGCTGC 59.969 60.000 0.00 0.00 0.00 5.25
2767 3175 0.671251 GGGAGAGATAGGTCGTGCTG 59.329 60.000 0.00 0.00 0.00 4.41
2768 3176 0.553819 AGGGAGAGATAGGTCGTGCT 59.446 55.000 0.00 0.00 0.00 4.40
2769 3177 1.338655 GAAGGGAGAGATAGGTCGTGC 59.661 57.143 0.00 0.00 0.00 5.34
2770 3178 1.604755 CGAAGGGAGAGATAGGTCGTG 59.395 57.143 0.00 0.00 0.00 4.35
2771 3179 1.970092 CGAAGGGAGAGATAGGTCGT 58.030 55.000 0.00 0.00 0.00 4.34
2772 3180 0.594110 GCGAAGGGAGAGATAGGTCG 59.406 60.000 0.00 0.00 0.00 4.79
2773 3181 0.594110 CGCGAAGGGAGAGATAGGTC 59.406 60.000 0.00 0.00 46.37 3.85
2774 3182 1.457009 GCGCGAAGGGAGAGATAGGT 61.457 60.000 12.10 0.00 46.37 3.08
2775 3183 1.287503 GCGCGAAGGGAGAGATAGG 59.712 63.158 12.10 0.00 46.37 2.57
2776 3184 1.287503 GGCGCGAAGGGAGAGATAG 59.712 63.158 12.10 0.00 46.37 2.08
2777 3185 2.201022 GGGCGCGAAGGGAGAGATA 61.201 63.158 12.10 0.00 46.37 1.98
2778 3186 3.541713 GGGCGCGAAGGGAGAGAT 61.542 66.667 12.10 0.00 46.37 2.75
2779 3187 4.761058 AGGGCGCGAAGGGAGAGA 62.761 66.667 12.10 0.00 46.37 3.10
2780 3188 4.214327 GAGGGCGCGAAGGGAGAG 62.214 72.222 12.10 0.00 46.37 3.20
2781 3189 4.761058 AGAGGGCGCGAAGGGAGA 62.761 66.667 12.10 0.00 46.37 3.71
2782 3190 4.214327 GAGAGGGCGCGAAGGGAG 62.214 72.222 12.10 0.00 46.37 4.30
2783 3191 4.761058 AGAGAGGGCGCGAAGGGA 62.761 66.667 12.10 0.00 46.37 4.20
2784 3192 3.724914 GAAGAGAGGGCGCGAAGGG 62.725 68.421 12.10 0.00 46.11 3.95
2785 3193 2.202810 GAAGAGAGGGCGCGAAGG 60.203 66.667 12.10 0.00 0.00 3.46
2786 3194 2.202810 GGAAGAGAGGGCGCGAAG 60.203 66.667 12.10 0.00 0.00 3.79
2787 3195 2.680352 AGGAAGAGAGGGCGCGAA 60.680 61.111 12.10 0.00 0.00 4.70
2788 3196 3.452786 CAGGAAGAGAGGGCGCGA 61.453 66.667 12.10 0.00 0.00 5.87
2789 3197 2.507110 TTTCAGGAAGAGAGGGCGCG 62.507 60.000 0.00 0.00 0.00 6.86
2790 3198 1.021920 GTTTCAGGAAGAGAGGGCGC 61.022 60.000 0.00 0.00 0.00 6.53
2791 3199 0.321671 TGTTTCAGGAAGAGAGGGCG 59.678 55.000 0.00 0.00 0.00 6.13
2792 3200 2.797177 ATGTTTCAGGAAGAGAGGGC 57.203 50.000 0.00 0.00 0.00 5.19
2793 3201 3.739519 CGCTATGTTTCAGGAAGAGAGGG 60.740 52.174 0.00 0.00 0.00 4.30
2794 3202 3.118956 ACGCTATGTTTCAGGAAGAGAGG 60.119 47.826 0.00 0.00 0.00 3.69
2795 3203 4.116747 ACGCTATGTTTCAGGAAGAGAG 57.883 45.455 0.00 0.00 0.00 3.20
2796 3204 4.537135 AACGCTATGTTTCAGGAAGAGA 57.463 40.909 0.00 0.00 37.59 3.10
2807 3215 2.484264 GAGCTGGTGAAAACGCTATGTT 59.516 45.455 0.00 0.00 44.59 2.71
2808 3216 2.076863 GAGCTGGTGAAAACGCTATGT 58.923 47.619 0.00 0.00 31.96 2.29
2809 3217 2.076100 TGAGCTGGTGAAAACGCTATG 58.924 47.619 0.00 0.00 31.96 2.23
2810 3218 2.472695 TGAGCTGGTGAAAACGCTAT 57.527 45.000 0.00 0.00 31.96 2.97
2811 3219 2.472695 ATGAGCTGGTGAAAACGCTA 57.527 45.000 0.00 0.00 31.96 4.26
2812 3220 2.289694 ACTATGAGCTGGTGAAAACGCT 60.290 45.455 0.00 0.00 35.03 5.07
2813 3221 2.076863 ACTATGAGCTGGTGAAAACGC 58.923 47.619 0.00 0.00 0.00 4.84
2814 3222 3.498397 ACAACTATGAGCTGGTGAAAACG 59.502 43.478 0.00 0.00 0.00 3.60
2815 3223 4.275936 ACACAACTATGAGCTGGTGAAAAC 59.724 41.667 0.00 0.00 0.00 2.43
2816 3224 4.460263 ACACAACTATGAGCTGGTGAAAA 58.540 39.130 0.00 0.00 0.00 2.29
2817 3225 4.065088 GACACAACTATGAGCTGGTGAAA 58.935 43.478 0.00 0.00 0.00 2.69
2818 3226 3.557054 GGACACAACTATGAGCTGGTGAA 60.557 47.826 0.00 0.00 0.00 3.18
2819 3227 2.028112 GGACACAACTATGAGCTGGTGA 60.028 50.000 0.00 0.00 0.00 4.02
2820 3228 2.289631 TGGACACAACTATGAGCTGGTG 60.290 50.000 0.00 0.00 0.00 4.17
2821 3229 1.977854 TGGACACAACTATGAGCTGGT 59.022 47.619 0.00 0.00 0.00 4.00
2822 3230 2.289631 TGTGGACACAACTATGAGCTGG 60.290 50.000 2.08 0.00 38.56 4.85
2823 3231 2.998670 CTGTGGACACAACTATGAGCTG 59.001 50.000 6.60 0.00 41.33 4.24
2824 3232 2.613977 GCTGTGGACACAACTATGAGCT 60.614 50.000 6.60 0.00 41.33 4.09
2825 3233 1.734465 GCTGTGGACACAACTATGAGC 59.266 52.381 6.60 1.14 41.33 4.26
2826 3234 2.998670 CAGCTGTGGACACAACTATGAG 59.001 50.000 5.25 0.00 41.33 2.90
2827 3235 2.632512 TCAGCTGTGGACACAACTATGA 59.367 45.455 14.67 6.33 41.33 2.15
2828 3236 3.044235 TCAGCTGTGGACACAACTATG 57.956 47.619 14.67 4.37 41.33 2.23
2829 3237 3.769739 TTCAGCTGTGGACACAACTAT 57.230 42.857 14.67 0.00 41.33 2.12
2830 3238 3.557054 GGATTCAGCTGTGGACACAACTA 60.557 47.826 14.67 0.00 41.33 2.24
2831 3239 2.498167 GATTCAGCTGTGGACACAACT 58.502 47.619 14.67 4.59 41.33 3.16
2832 3240 1.537202 GGATTCAGCTGTGGACACAAC 59.463 52.381 14.67 2.12 41.33 3.32
2833 3241 1.877680 CGGATTCAGCTGTGGACACAA 60.878 52.381 14.67 0.00 41.33 3.33
2834 3242 0.320683 CGGATTCAGCTGTGGACACA 60.321 55.000 14.67 4.92 39.32 3.72
2835 3243 0.320771 ACGGATTCAGCTGTGGACAC 60.321 55.000 14.67 0.00 0.00 3.67
2836 3244 0.037326 GACGGATTCAGCTGTGGACA 60.037 55.000 14.67 0.00 0.00 4.02
2837 3245 1.078759 CGACGGATTCAGCTGTGGAC 61.079 60.000 14.67 4.17 0.00 4.02
2838 3246 1.215382 CGACGGATTCAGCTGTGGA 59.785 57.895 14.67 1.43 0.00 4.02
2839 3247 0.389817 TTCGACGGATTCAGCTGTGG 60.390 55.000 14.67 2.35 0.00 4.17
2840 3248 1.126846 GTTTCGACGGATTCAGCTGTG 59.873 52.381 14.67 2.55 0.00 3.66
2841 3249 1.000955 AGTTTCGACGGATTCAGCTGT 59.999 47.619 14.67 0.00 0.00 4.40
2842 3250 1.714794 AGTTTCGACGGATTCAGCTG 58.285 50.000 7.63 7.63 0.00 4.24
2843 3251 3.587797 TTAGTTTCGACGGATTCAGCT 57.412 42.857 0.00 0.00 0.00 4.24
2844 3252 3.483738 GCTTTAGTTTCGACGGATTCAGC 60.484 47.826 0.00 0.00 0.00 4.26
2845 3253 3.062234 GGCTTTAGTTTCGACGGATTCAG 59.938 47.826 0.00 0.00 0.00 3.02
2846 3254 2.997986 GGCTTTAGTTTCGACGGATTCA 59.002 45.455 0.00 0.00 0.00 2.57
2847 3255 2.350804 GGGCTTTAGTTTCGACGGATTC 59.649 50.000 0.00 0.00 0.00 2.52
2848 3256 2.289819 TGGGCTTTAGTTTCGACGGATT 60.290 45.455 0.00 0.00 0.00 3.01
2849 3257 1.276989 TGGGCTTTAGTTTCGACGGAT 59.723 47.619 0.00 0.00 0.00 4.18
2850 3258 0.680618 TGGGCTTTAGTTTCGACGGA 59.319 50.000 0.00 0.00 0.00 4.69
2851 3259 1.515081 TTGGGCTTTAGTTTCGACGG 58.485 50.000 0.00 0.00 0.00 4.79
2852 3260 2.288458 TGTTTGGGCTTTAGTTTCGACG 59.712 45.455 0.00 0.00 0.00 5.12
2853 3261 3.974871 TGTTTGGGCTTTAGTTTCGAC 57.025 42.857 0.00 0.00 0.00 4.20
2854 3262 3.243267 GCTTGTTTGGGCTTTAGTTTCGA 60.243 43.478 0.00 0.00 0.00 3.71
2855 3263 3.049912 GCTTGTTTGGGCTTTAGTTTCG 58.950 45.455 0.00 0.00 0.00 3.46
2856 3264 3.802139 GTGCTTGTTTGGGCTTTAGTTTC 59.198 43.478 0.00 0.00 0.00 2.78
2857 3265 3.736740 CGTGCTTGTTTGGGCTTTAGTTT 60.737 43.478 0.00 0.00 0.00 2.66
2858 3266 2.223711 CGTGCTTGTTTGGGCTTTAGTT 60.224 45.455 0.00 0.00 0.00 2.24
2859 3267 1.336755 CGTGCTTGTTTGGGCTTTAGT 59.663 47.619 0.00 0.00 0.00 2.24
2860 3268 1.335872 CCGTGCTTGTTTGGGCTTTAG 60.336 52.381 0.00 0.00 0.00 1.85
2861 3269 0.671251 CCGTGCTTGTTTGGGCTTTA 59.329 50.000 0.00 0.00 0.00 1.85
2862 3270 1.441311 CCGTGCTTGTTTGGGCTTT 59.559 52.632 0.00 0.00 0.00 3.51
2863 3271 3.128375 CCGTGCTTGTTTGGGCTT 58.872 55.556 0.00 0.00 0.00 4.35
2864 3272 3.605664 GCCGTGCTTGTTTGGGCT 61.606 61.111 0.00 0.00 40.59 5.19
2865 3273 4.662961 GGCCGTGCTTGTTTGGGC 62.663 66.667 0.00 0.00 43.01 5.36
2866 3274 0.965363 ATAGGCCGTGCTTGTTTGGG 60.965 55.000 0.00 0.00 0.00 4.12
2867 3275 1.745232 TATAGGCCGTGCTTGTTTGG 58.255 50.000 0.00 0.00 0.00 3.28
2868 3276 2.541588 GCATATAGGCCGTGCTTGTTTG 60.542 50.000 15.23 0.00 36.02 2.93
2869 3277 1.676006 GCATATAGGCCGTGCTTGTTT 59.324 47.619 15.23 0.00 36.02 2.83
2870 3278 1.308998 GCATATAGGCCGTGCTTGTT 58.691 50.000 15.23 0.00 36.02 2.83
2871 3279 0.180171 TGCATATAGGCCGTGCTTGT 59.820 50.000 20.56 0.00 39.52 3.16
2872 3280 0.588252 GTGCATATAGGCCGTGCTTG 59.412 55.000 20.56 8.62 39.52 4.01
2873 3281 0.469917 AGTGCATATAGGCCGTGCTT 59.530 50.000 20.56 10.36 39.52 3.91
2874 3282 0.469917 AAGTGCATATAGGCCGTGCT 59.530 50.000 20.56 0.00 39.52 4.40
2875 3283 0.868406 GAAGTGCATATAGGCCGTGC 59.132 55.000 6.95 15.52 39.26 5.34
2876 3284 2.238942 TGAAGTGCATATAGGCCGTG 57.761 50.000 6.95 0.00 0.00 4.94
2877 3285 2.485479 CCTTGAAGTGCATATAGGCCGT 60.485 50.000 6.95 0.00 0.00 5.68
2878 3286 2.146342 CCTTGAAGTGCATATAGGCCG 58.854 52.381 6.95 0.00 0.00 6.13
2879 3287 2.880890 CACCTTGAAGTGCATATAGGCC 59.119 50.000 6.95 0.00 0.00 5.19
2889 3297 0.817634 TCCCGTTGCACCTTGAAGTG 60.818 55.000 0.00 0.00 40.88 3.16
2890 3298 0.818040 GTCCCGTTGCACCTTGAAGT 60.818 55.000 0.00 0.00 0.00 3.01
2891 3299 0.817634 TGTCCCGTTGCACCTTGAAG 60.818 55.000 0.00 0.00 0.00 3.02
2892 3300 1.098712 GTGTCCCGTTGCACCTTGAA 61.099 55.000 0.00 0.00 0.00 2.69
2893 3301 1.525077 GTGTCCCGTTGCACCTTGA 60.525 57.895 0.00 0.00 0.00 3.02
2894 3302 1.821759 TGTGTCCCGTTGCACCTTG 60.822 57.895 0.00 0.00 34.94 3.61
2895 3303 1.822186 GTGTGTCCCGTTGCACCTT 60.822 57.895 0.00 0.00 34.94 3.50
2896 3304 2.203153 GTGTGTCCCGTTGCACCT 60.203 61.111 0.00 0.00 34.94 4.00
2897 3305 2.115911 TTGTGTGTCCCGTTGCACC 61.116 57.895 0.00 0.00 34.94 5.01
2898 3306 1.063488 GTTGTGTGTCCCGTTGCAC 59.937 57.895 0.00 0.00 36.26 4.57
2899 3307 1.377333 TGTTGTGTGTCCCGTTGCA 60.377 52.632 0.00 0.00 0.00 4.08
2900 3308 1.063488 GTGTTGTGTGTCCCGTTGC 59.937 57.895 0.00 0.00 0.00 4.17
2901 3309 0.805614 TTGTGTTGTGTGTCCCGTTG 59.194 50.000 0.00 0.00 0.00 4.10
2902 3310 0.806241 GTTGTGTTGTGTGTCCCGTT 59.194 50.000 0.00 0.00 0.00 4.44
2903 3311 1.363145 CGTTGTGTTGTGTGTCCCGT 61.363 55.000 0.00 0.00 0.00 5.28
2904 3312 1.350319 CGTTGTGTTGTGTGTCCCG 59.650 57.895 0.00 0.00 0.00 5.14
2905 3313 1.720694 CCCGTTGTGTTGTGTGTCCC 61.721 60.000 0.00 0.00 0.00 4.46
2906 3314 1.725066 CCCGTTGTGTTGTGTGTCC 59.275 57.895 0.00 0.00 0.00 4.02
2907 3315 1.063488 GCCCGTTGTGTTGTGTGTC 59.937 57.895 0.00 0.00 0.00 3.67
2908 3316 0.963355 AAGCCCGTTGTGTTGTGTGT 60.963 50.000 0.00 0.00 0.00 3.72
2909 3317 0.248458 GAAGCCCGTTGTGTTGTGTG 60.248 55.000 0.00 0.00 0.00 3.82
2910 3318 0.678366 TGAAGCCCGTTGTGTTGTGT 60.678 50.000 0.00 0.00 0.00 3.72
2911 3319 0.248458 GTGAAGCCCGTTGTGTTGTG 60.248 55.000 0.00 0.00 0.00 3.33
2912 3320 0.678366 TGTGAAGCCCGTTGTGTTGT 60.678 50.000 0.00 0.00 0.00 3.32
2913 3321 0.453793 TTGTGAAGCCCGTTGTGTTG 59.546 50.000 0.00 0.00 0.00 3.33
2914 3322 0.738389 CTTGTGAAGCCCGTTGTGTT 59.262 50.000 0.00 0.00 0.00 3.32
2915 3323 0.393808 ACTTGTGAAGCCCGTTGTGT 60.394 50.000 0.00 0.00 0.00 3.72
2916 3324 0.738389 AACTTGTGAAGCCCGTTGTG 59.262 50.000 0.00 0.00 0.00 3.33
2917 3325 0.738389 CAACTTGTGAAGCCCGTTGT 59.262 50.000 0.00 0.00 32.52 3.32
2918 3326 0.594796 GCAACTTGTGAAGCCCGTTG 60.595 55.000 0.00 0.00 38.31 4.10
2919 3327 0.751643 AGCAACTTGTGAAGCCCGTT 60.752 50.000 0.00 0.00 0.00 4.44
2920 3328 0.751643 AAGCAACTTGTGAAGCCCGT 60.752 50.000 0.00 0.00 0.00 5.28
2921 3329 0.040067 GAAGCAACTTGTGAAGCCCG 60.040 55.000 0.00 0.00 0.00 6.13
2922 3330 1.032014 TGAAGCAACTTGTGAAGCCC 58.968 50.000 0.00 0.00 0.00 5.19
2923 3331 3.005155 AGAATGAAGCAACTTGTGAAGCC 59.995 43.478 0.00 0.00 0.00 4.35
2924 3332 4.234530 AGAATGAAGCAACTTGTGAAGC 57.765 40.909 0.00 0.00 0.00 3.86
2925 3333 6.069684 AGAAGAATGAAGCAACTTGTGAAG 57.930 37.500 0.00 0.00 0.00 3.02
2926 3334 7.417612 GTTAGAAGAATGAAGCAACTTGTGAA 58.582 34.615 0.00 0.00 0.00 3.18
2927 3335 6.017109 GGTTAGAAGAATGAAGCAACTTGTGA 60.017 38.462 0.00 0.00 0.00 3.58
2928 3336 6.016777 AGGTTAGAAGAATGAAGCAACTTGTG 60.017 38.462 0.00 0.00 0.00 3.33
2929 3337 6.064717 AGGTTAGAAGAATGAAGCAACTTGT 58.935 36.000 0.00 0.00 0.00 3.16
2930 3338 6.566197 AGGTTAGAAGAATGAAGCAACTTG 57.434 37.500 0.00 0.00 0.00 3.16
2931 3339 8.870075 AATAGGTTAGAAGAATGAAGCAACTT 57.130 30.769 0.00 0.00 0.00 2.66
2932 3340 9.384764 GTAATAGGTTAGAAGAATGAAGCAACT 57.615 33.333 0.00 0.00 0.00 3.16
2933 3341 8.613482 GGTAATAGGTTAGAAGAATGAAGCAAC 58.387 37.037 0.00 0.00 0.00 4.17
2934 3342 8.325787 TGGTAATAGGTTAGAAGAATGAAGCAA 58.674 33.333 0.00 0.00 0.00 3.91
2935 3343 7.857456 TGGTAATAGGTTAGAAGAATGAAGCA 58.143 34.615 0.00 0.00 0.00 3.91
2936 3344 8.778358 CATGGTAATAGGTTAGAAGAATGAAGC 58.222 37.037 0.00 0.00 0.00 3.86
2937 3345 9.838339 ACATGGTAATAGGTTAGAAGAATGAAG 57.162 33.333 0.00 0.00 0.00 3.02
2938 3346 9.832445 GACATGGTAATAGGTTAGAAGAATGAA 57.168 33.333 0.00 0.00 0.00 2.57
2939 3347 8.429641 GGACATGGTAATAGGTTAGAAGAATGA 58.570 37.037 0.00 0.00 0.00 2.57
2940 3348 8.432805 AGGACATGGTAATAGGTTAGAAGAATG 58.567 37.037 0.00 0.00 0.00 2.67
2941 3349 8.432805 CAGGACATGGTAATAGGTTAGAAGAAT 58.567 37.037 0.00 0.00 0.00 2.40
2942 3350 7.147549 CCAGGACATGGTAATAGGTTAGAAGAA 60.148 40.741 0.00 0.00 44.91 2.52
2943 3351 6.326583 CCAGGACATGGTAATAGGTTAGAAGA 59.673 42.308 0.00 0.00 44.91 2.87
2944 3352 6.525629 CCAGGACATGGTAATAGGTTAGAAG 58.474 44.000 0.00 0.00 44.91 2.85
2945 3353 6.494666 CCAGGACATGGTAATAGGTTAGAA 57.505 41.667 0.00 0.00 44.91 2.10
2959 3367 3.222603 GGGGCTAATAAACCAGGACATG 58.777 50.000 0.00 0.00 0.00 3.21
2960 3368 2.177016 GGGGGCTAATAAACCAGGACAT 59.823 50.000 0.00 0.00 0.00 3.06
2961 3369 1.567175 GGGGGCTAATAAACCAGGACA 59.433 52.381 0.00 0.00 0.00 4.02
2962 3370 1.850998 AGGGGGCTAATAAACCAGGAC 59.149 52.381 0.00 0.00 0.00 3.85
2963 3371 2.243736 CAAGGGGGCTAATAAACCAGGA 59.756 50.000 0.00 0.00 0.00 3.86
2964 3372 2.024369 ACAAGGGGGCTAATAAACCAGG 60.024 50.000 0.00 0.00 0.00 4.45
2965 3373 3.382083 ACAAGGGGGCTAATAAACCAG 57.618 47.619 0.00 0.00 0.00 4.00
2966 3374 5.475398 AATACAAGGGGGCTAATAAACCA 57.525 39.130 0.00 0.00 0.00 3.67
2967 3375 5.009310 CGAAATACAAGGGGGCTAATAAACC 59.991 44.000 0.00 0.00 0.00 3.27
2968 3376 5.009310 CCGAAATACAAGGGGGCTAATAAAC 59.991 44.000 0.00 0.00 0.00 2.01
2969 3377 5.134661 CCGAAATACAAGGGGGCTAATAAA 58.865 41.667 0.00 0.00 0.00 1.40
2970 3378 4.446600 CCCGAAATACAAGGGGGCTAATAA 60.447 45.833 0.00 0.00 41.43 1.40
2971 3379 3.073356 CCCGAAATACAAGGGGGCTAATA 59.927 47.826 0.00 0.00 41.43 0.98
2972 3380 2.158519 CCCGAAATACAAGGGGGCTAAT 60.159 50.000 0.00 0.00 41.43 1.73
2973 3381 1.213430 CCCGAAATACAAGGGGGCTAA 59.787 52.381 0.00 0.00 41.43 3.09
2974 3382 0.841289 CCCGAAATACAAGGGGGCTA 59.159 55.000 0.00 0.00 41.43 3.93
2975 3383 1.613061 CCCGAAATACAAGGGGGCT 59.387 57.895 0.00 0.00 41.43 5.19
2976 3384 4.252983 CCCGAAATACAAGGGGGC 57.747 61.111 0.00 0.00 41.43 5.80
2980 3388 8.132995 GGTCAAAATATAACCCGAAATACAAGG 58.867 37.037 0.00 0.00 0.00 3.61
2981 3389 8.679100 TGGTCAAAATATAACCCGAAATACAAG 58.321 33.333 0.00 0.00 31.78 3.16
2982 3390 8.577048 TGGTCAAAATATAACCCGAAATACAA 57.423 30.769 0.00 0.00 31.78 2.41
2983 3391 8.754991 ATGGTCAAAATATAACCCGAAATACA 57.245 30.769 0.00 0.00 31.78 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.