Multiple sequence alignment - TraesCS3D01G358300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G358300 chr3D 100.000 4634 0 0 1 4634 471777019 471772386 0.000000e+00 8558.0
1 TraesCS3D01G358300 chr3B 92.890 2152 88 34 344 2462 627214554 627212435 0.000000e+00 3066.0
2 TraesCS3D01G358300 chr3B 90.412 970 67 13 3081 4047 627211752 627210806 0.000000e+00 1253.0
3 TraesCS3D01G358300 chr3B 93.982 565 20 5 2461 3024 627212311 627211760 0.000000e+00 843.0
4 TraesCS3D01G358300 chr3B 91.456 316 18 4 49 356 627214895 627214581 4.290000e-115 425.0
5 TraesCS3D01G358300 chr3B 87.665 227 21 3 4176 4396 627210659 627210434 1.650000e-64 257.0
6 TraesCS3D01G358300 chr3B 95.000 60 3 0 4573 4632 43489881 43489822 1.370000e-15 95.3
7 TraesCS3D01G358300 chr3B 95.652 46 2 0 4575 4620 764120787 764120742 1.790000e-09 75.0
8 TraesCS3D01G358300 chr3A 93.568 1928 75 21 337 2244 614541943 614540045 0.000000e+00 2828.0
9 TraesCS3D01G358300 chr3A 90.275 1018 73 13 3081 4093 614539372 614538376 0.000000e+00 1308.0
10 TraesCS3D01G358300 chr3A 93.935 676 27 5 2366 3040 614540042 614539380 0.000000e+00 1009.0
11 TraesCS3D01G358300 chr3A 88.994 318 22 4 1 305 614544429 614544112 9.410000e-102 381.0
12 TraesCS3D01G358300 chr3A 93.548 155 10 0 4421 4575 20994574 20994420 1.000000e-56 231.0
13 TraesCS3D01G358300 chr3A 92.537 134 10 0 4292 4425 614537304 614537171 4.730000e-45 193.0
14 TraesCS3D01G358300 chr3A 93.421 76 4 1 4229 4304 614538078 614538004 1.360000e-20 111.0
15 TraesCS3D01G358300 chr3A 97.500 40 1 0 4575 4614 610507491 610507530 8.320000e-08 69.4
16 TraesCS3D01G358300 chr1D 82.710 428 52 9 1129 1536 377188191 377188616 1.230000e-95 361.0
17 TraesCS3D01G358300 chr1D 94.631 149 8 0 4421 4569 17667609 17667757 1.000000e-56 231.0
18 TraesCS3D01G358300 chr1D 93.548 155 10 0 4421 4575 74387300 74387454 1.000000e-56 231.0
19 TraesCS3D01G358300 chr1A 82.599 431 50 12 1129 1536 477731378 477731806 1.590000e-94 357.0
20 TraesCS3D01G358300 chr1B 82.243 428 54 9 1129 1536 504089139 504089564 2.650000e-92 350.0
21 TraesCS3D01G358300 chr4B 94.839 155 8 0 4421 4575 623382207 623382053 4.630000e-60 243.0
22 TraesCS3D01G358300 chr7D 95.364 151 7 0 4425 4575 20908528 20908678 1.670000e-59 241.0
23 TraesCS3D01G358300 chr7D 97.436 39 1 0 4572 4610 449285869 449285907 2.990000e-07 67.6
24 TraesCS3D01G358300 chr7D 91.489 47 3 1 4568 4614 572660829 572660874 3.870000e-06 63.9
25 TraesCS3D01G358300 chr2D 94.194 155 9 0 4421 4575 590786703 590786857 2.160000e-58 237.0
26 TraesCS3D01G358300 chr6D 94.702 151 8 0 4425 4575 7269467 7269617 7.750000e-58 235.0
27 TraesCS3D01G358300 chr4D 93.548 155 10 0 4421 4575 138302516 138302670 1.000000e-56 231.0
28 TraesCS3D01G358300 chr5D 93.548 155 9 1 4421 4575 370637356 370637203 3.610000e-56 230.0
29 TraesCS3D01G358300 chr5D 89.831 59 5 1 4575 4633 312066469 312066412 1.790000e-09 75.0
30 TraesCS3D01G358300 chr5A 100.000 62 0 0 4573 4634 661312166 661312227 1.050000e-21 115.0
31 TraesCS3D01G358300 chr5A 98.333 60 1 0 4575 4634 536819586 536819645 6.340000e-19 106.0
32 TraesCS3D01G358300 chrUn 96.667 60 2 0 4575 4634 108931575 108931516 2.950000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G358300 chr3D 471772386 471777019 4633 True 8558.000000 8558 100.000000 1 4634 1 chr3D.!!$R1 4633
1 TraesCS3D01G358300 chr3B 627210434 627214895 4461 True 1168.800000 3066 91.281000 49 4396 5 chr3B.!!$R3 4347
2 TraesCS3D01G358300 chr3A 614537171 614544429 7258 True 971.666667 2828 92.121667 1 4425 6 chr3A.!!$R2 4424

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
509 2677 0.820871 CTTCTCCGTCTCTTCCCCAG 59.179 60.000 0.0 0.0 0.0 4.45 F
712 2885 1.343465 CGTCGGTAGGGGCATATTTCT 59.657 52.381 0.0 0.0 0.0 2.52 F
2076 4280 0.178995 TGGCCAGCAATCACAACTCA 60.179 50.000 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1589 3789 0.441533 GCATGAACACTGACAGCTCG 59.558 55.000 1.25 0.0 0.00 5.03 R
2079 4283 1.065854 ACCCATAGAGCAGTGAGTTGC 60.066 52.381 0.00 0.0 44.41 4.17 R
3865 6202 0.321475 CGCACAATGCCCCCATTTTT 60.321 50.000 0.00 0.0 41.12 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
158 174 2.165319 AGTACCGAGTGAAGTTTGGC 57.835 50.000 0.00 0.00 0.00 4.52
182 200 2.742774 GCAATTTGCACCGAGAAAACT 58.257 42.857 16.35 0.00 44.26 2.66
191 209 4.142271 TGCACCGAGAAAACTGTTTCAAAT 60.142 37.500 6.20 0.00 44.82 2.32
195 213 4.611366 CCGAGAAAACTGTTTCAAATACGC 59.389 41.667 6.20 0.00 44.82 4.42
332 2461 3.730715 CGTCTGCTTTTGAATTTGACACC 59.269 43.478 0.00 0.00 0.00 4.16
333 2462 3.730715 GTCTGCTTTTGAATTTGACACCG 59.269 43.478 0.00 0.00 0.00 4.94
338 2467 5.163513 GCTTTTGAATTTGACACCGATCAT 58.836 37.500 0.00 0.00 0.00 2.45
364 2532 1.795170 GCTCTGCTTTTGGACGCCAA 61.795 55.000 7.15 7.15 42.29 4.52
484 2652 2.357881 GTTCCAACCCCGTCGTCC 60.358 66.667 0.00 0.00 0.00 4.79
494 2662 2.039405 CCGTCGTCCCGTCTCTTCT 61.039 63.158 0.00 0.00 0.00 2.85
497 2665 1.744368 TCGTCCCGTCTCTTCTCCG 60.744 63.158 0.00 0.00 0.00 4.63
509 2677 0.820871 CTTCTCCGTCTCTTCCCCAG 59.179 60.000 0.00 0.00 0.00 4.45
590 2758 2.046023 CTCGGCATTGGGACTGCA 60.046 61.111 0.00 0.00 41.47 4.41
613 2781 4.530857 CATCGCGTCCACCCCCTC 62.531 72.222 5.77 0.00 0.00 4.30
620 2788 2.540910 TCCACCCCCTCCCTCTCT 60.541 66.667 0.00 0.00 0.00 3.10
625 2793 4.179599 CCCCTCCCTCTCTCCCCC 62.180 77.778 0.00 0.00 0.00 5.40
657 2830 2.196742 TGGATCAGGAGCCCACTTAT 57.803 50.000 0.46 0.00 35.64 1.73
658 2831 2.492025 TGGATCAGGAGCCCACTTATT 58.508 47.619 0.46 0.00 35.64 1.40
661 2834 4.476846 TGGATCAGGAGCCCACTTATTAAA 59.523 41.667 0.46 0.00 35.64 1.52
662 2835 5.044476 TGGATCAGGAGCCCACTTATTAAAA 60.044 40.000 0.46 0.00 35.64 1.52
663 2836 5.891551 GGATCAGGAGCCCACTTATTAAAAA 59.108 40.000 0.00 0.00 0.00 1.94
664 2837 6.551227 GGATCAGGAGCCCACTTATTAAAAAT 59.449 38.462 0.00 0.00 0.00 1.82
665 2838 7.255625 GGATCAGGAGCCCACTTATTAAAAATC 60.256 40.741 0.00 0.00 0.00 2.17
666 2839 5.891551 TCAGGAGCCCACTTATTAAAAATCC 59.108 40.000 0.00 0.00 0.00 3.01
667 2840 5.069119 CAGGAGCCCACTTATTAAAAATCCC 59.931 44.000 0.00 0.00 0.00 3.85
668 2841 4.037565 GGAGCCCACTTATTAAAAATCCCG 59.962 45.833 0.00 0.00 0.00 5.14
712 2885 1.343465 CGTCGGTAGGGGCATATTTCT 59.657 52.381 0.00 0.00 0.00 2.52
713 2886 2.767505 GTCGGTAGGGGCATATTTCTG 58.232 52.381 0.00 0.00 0.00 3.02
798 2971 4.966787 TTGTGTTCTGGCCGGGGC 62.967 66.667 14.65 14.65 41.06 5.80
877 3062 1.531602 GTTTGCTCCTGCCCCTGTT 60.532 57.895 0.00 0.00 38.71 3.16
943 3128 4.081917 ACTGATCTCGTCTCCTTTTCTTCC 60.082 45.833 0.00 0.00 0.00 3.46
1021 3206 3.827784 CGAACGACGGCGAGCAAG 61.828 66.667 22.49 0.00 41.64 4.01
1189 3383 2.992114 ACTCGCGCCAGAACTCCT 60.992 61.111 9.65 0.00 0.00 3.69
1338 3538 4.477975 GACGTCGACCTGGAGGCG 62.478 72.222 10.58 16.33 39.32 5.52
1589 3789 2.749621 CACCTGGATAAAAGAGTGCCAC 59.250 50.000 0.00 0.00 0.00 5.01
1618 3818 3.065233 TCAGTGTTCATGCACAACAACTC 59.935 43.478 13.34 3.74 41.52 3.01
1633 3833 9.209297 GCACAACAACTCAAATAAAAATGTTTC 57.791 29.630 0.00 0.00 0.00 2.78
1821 4021 3.146847 GAGGGGACAGTGTAAAAGTTGG 58.853 50.000 0.00 0.00 0.00 3.77
1893 4093 4.569719 TGGGTAAAGTCAGATTCCTTCC 57.430 45.455 0.00 0.00 0.00 3.46
1955 4155 5.258456 TGATATCCGTAAGTGGAAGTGTC 57.742 43.478 0.00 0.00 42.46 3.67
1956 4156 2.649331 ATCCGTAAGTGGAAGTGTCG 57.351 50.000 0.00 0.00 42.46 4.35
1960 4160 1.268899 CGTAAGTGGAAGTGTCGACCT 59.731 52.381 14.12 6.92 33.19 3.85
2062 4266 5.132648 AGGTATACTTCATGAGAATTGGCCA 59.867 40.000 0.00 0.00 32.31 5.36
2063 4267 5.471456 GGTATACTTCATGAGAATTGGCCAG 59.529 44.000 5.11 0.00 32.31 4.85
2070 4274 1.820519 TGAGAATTGGCCAGCAATCAC 59.179 47.619 5.11 2.75 0.00 3.06
2071 4275 1.820519 GAGAATTGGCCAGCAATCACA 59.179 47.619 5.11 0.00 0.00 3.58
2072 4276 2.231964 GAGAATTGGCCAGCAATCACAA 59.768 45.455 5.11 0.00 0.00 3.33
2073 4277 2.028748 AGAATTGGCCAGCAATCACAAC 60.029 45.455 5.11 0.00 0.00 3.32
2074 4278 1.636148 ATTGGCCAGCAATCACAACT 58.364 45.000 5.11 0.00 0.00 3.16
2075 4279 0.961019 TTGGCCAGCAATCACAACTC 59.039 50.000 5.11 0.00 0.00 3.01
2076 4280 0.178995 TGGCCAGCAATCACAACTCA 60.179 50.000 0.00 0.00 0.00 3.41
2077 4281 0.242017 GGCCAGCAATCACAACTCAC 59.758 55.000 0.00 0.00 0.00 3.51
2078 4282 1.242076 GCCAGCAATCACAACTCACT 58.758 50.000 0.00 0.00 0.00 3.41
2079 4283 1.068748 GCCAGCAATCACAACTCACTG 60.069 52.381 0.00 0.00 0.00 3.66
2131 4335 2.309528 TGCCTAAGATTGCACTACCG 57.690 50.000 0.00 0.00 31.31 4.02
2182 4387 5.649782 AGGTTTTGCTTATCCATGAGTTG 57.350 39.130 0.00 0.00 0.00 3.16
2184 4389 4.220602 GGTTTTGCTTATCCATGAGTTGGT 59.779 41.667 0.00 0.00 46.52 3.67
2185 4390 5.417580 GGTTTTGCTTATCCATGAGTTGGTA 59.582 40.000 0.00 0.00 46.52 3.25
2194 4399 5.241403 TCCATGAGTTGGTAGACATTGTT 57.759 39.130 0.00 0.00 46.52 2.83
2253 4459 6.043854 GGTAACAATCCAAATAAAGGCCAA 57.956 37.500 5.01 0.00 0.00 4.52
2380 4589 5.454187 GGTTCCGTTGAGATATTCCCACATA 60.454 44.000 0.00 0.00 0.00 2.29
2422 4631 5.532032 TCATGTCAGAAATTTGAGAAGTGCA 59.468 36.000 0.00 0.00 0.00 4.57
2444 4653 7.009815 GTGCACGAAAGTTATAAGCAGTACATA 59.990 37.037 0.00 0.00 46.40 2.29
2666 5001 4.597075 TGGGGCTACATATTCTAATCTGCA 59.403 41.667 0.00 0.00 0.00 4.41
2683 5018 7.807977 AATCTGCATACAATAACTTCGGAAT 57.192 32.000 0.00 0.00 0.00 3.01
2768 5103 6.112058 AGATAGCAACAAGAGCCTCTTTAAG 58.888 40.000 3.68 0.00 33.78 1.85
2817 5152 3.084786 AGGCAACCTATTTTCTGTCTGC 58.915 45.455 0.00 0.00 28.47 4.26
2818 5153 3.084786 GGCAACCTATTTTCTGTCTGCT 58.915 45.455 0.00 0.00 0.00 4.24
2819 5154 3.119708 GGCAACCTATTTTCTGTCTGCTG 60.120 47.826 0.00 0.00 0.00 4.41
2820 5155 3.503748 GCAACCTATTTTCTGTCTGCTGT 59.496 43.478 0.00 0.00 0.00 4.40
2821 5156 4.378874 GCAACCTATTTTCTGTCTGCTGTC 60.379 45.833 0.00 0.00 0.00 3.51
2822 5157 4.899352 ACCTATTTTCTGTCTGCTGTCT 57.101 40.909 0.00 0.00 0.00 3.41
2823 5158 4.573900 ACCTATTTTCTGTCTGCTGTCTG 58.426 43.478 0.00 0.00 0.00 3.51
2824 5159 3.373439 CCTATTTTCTGTCTGCTGTCTGC 59.627 47.826 0.00 0.00 43.25 4.26
2945 5280 8.785329 ATGTTTTGGTTGAAGTTGTTAAATGT 57.215 26.923 0.00 0.00 0.00 2.71
2965 5300 8.655935 AAATGTGGAAGATCTTTTACCTTGAT 57.344 30.769 9.87 0.00 0.00 2.57
2966 5301 9.753674 AAATGTGGAAGATCTTTTACCTTGATA 57.246 29.630 9.87 0.00 0.00 2.15
2967 5302 8.738645 ATGTGGAAGATCTTTTACCTTGATAC 57.261 34.615 9.87 1.44 0.00 2.24
2968 5303 7.685481 TGTGGAAGATCTTTTACCTTGATACA 58.315 34.615 9.87 3.93 0.00 2.29
2969 5304 7.824289 TGTGGAAGATCTTTTACCTTGATACAG 59.176 37.037 9.87 0.00 0.00 2.74
2984 5319 8.349983 ACCTTGATACAGTATTTGTGTTGTTTC 58.650 33.333 0.00 0.00 41.10 2.78
3040 5375 5.833406 CATGTTCTTATGCATGGTACCAA 57.167 39.130 20.76 2.24 38.90 3.67
3041 5376 5.581605 CATGTTCTTATGCATGGTACCAAC 58.418 41.667 20.76 14.87 38.90 3.77
3043 5378 6.056090 TGTTCTTATGCATGGTACCAACTA 57.944 37.500 20.76 8.26 0.00 2.24
3044 5379 5.878116 TGTTCTTATGCATGGTACCAACTAC 59.122 40.000 20.76 9.18 0.00 2.73
3045 5380 5.031066 TCTTATGCATGGTACCAACTACC 57.969 43.478 20.76 6.21 45.08 3.18
3052 5387 1.817357 GGTACCAACTACCAACAGGC 58.183 55.000 7.15 0.00 44.32 4.85
3053 5388 1.072648 GGTACCAACTACCAACAGGCA 59.927 52.381 7.15 0.00 44.32 4.75
3054 5389 2.290705 GGTACCAACTACCAACAGGCAT 60.291 50.000 7.15 0.00 44.32 4.40
3055 5390 3.054948 GGTACCAACTACCAACAGGCATA 60.055 47.826 7.15 0.00 44.32 3.14
3056 5391 3.067684 ACCAACTACCAACAGGCATAC 57.932 47.619 0.00 0.00 0.00 2.39
3057 5392 2.373836 ACCAACTACCAACAGGCATACA 59.626 45.455 0.00 0.00 0.00 2.29
3058 5393 3.010138 ACCAACTACCAACAGGCATACAT 59.990 43.478 0.00 0.00 0.00 2.29
3059 5394 3.378112 CCAACTACCAACAGGCATACATG 59.622 47.826 0.00 0.00 0.00 3.21
3060 5395 4.009675 CAACTACCAACAGGCATACATGT 58.990 43.478 2.69 2.69 0.00 3.21
3061 5396 5.182487 CAACTACCAACAGGCATACATGTA 58.818 41.667 8.27 8.27 0.00 2.29
3062 5397 5.023533 ACTACCAACAGGCATACATGTAG 57.976 43.478 11.91 5.01 0.00 2.74
3063 5398 3.281727 ACCAACAGGCATACATGTAGG 57.718 47.619 13.10 13.10 0.00 3.18
3064 5399 1.949525 CCAACAGGCATACATGTAGGC 59.050 52.381 29.49 29.49 41.60 3.93
3065 5400 2.642427 CAACAGGCATACATGTAGGCA 58.358 47.619 35.24 6.67 43.84 4.75
3066 5401 3.216800 CAACAGGCATACATGTAGGCAT 58.783 45.455 35.24 29.49 43.84 4.40
3067 5402 4.388485 CAACAGGCATACATGTAGGCATA 58.612 43.478 35.24 5.51 43.84 3.14
3068 5403 4.916041 ACAGGCATACATGTAGGCATAT 57.084 40.909 35.24 21.68 43.84 1.78
3069 5404 5.246981 ACAGGCATACATGTAGGCATATT 57.753 39.130 35.24 20.61 43.84 1.28
3070 5405 5.634118 ACAGGCATACATGTAGGCATATTT 58.366 37.500 35.24 18.46 43.84 1.40
3071 5406 6.778821 ACAGGCATACATGTAGGCATATTTA 58.221 36.000 35.24 2.48 43.84 1.40
3072 5407 6.881065 ACAGGCATACATGTAGGCATATTTAG 59.119 38.462 35.24 22.19 43.84 1.85
3073 5408 6.881065 CAGGCATACATGTAGGCATATTTAGT 59.119 38.462 35.24 12.46 43.84 2.24
3074 5409 7.391554 CAGGCATACATGTAGGCATATTTAGTT 59.608 37.037 35.24 12.27 43.84 2.24
3075 5410 8.602424 AGGCATACATGTAGGCATATTTAGTTA 58.398 33.333 35.24 0.62 43.84 2.24
3076 5411 9.226606 GGCATACATGTAGGCATATTTAGTTAA 57.773 33.333 35.24 0.23 43.84 2.01
3094 5429 9.569122 TTTAGTTAAGTCTTTAAGAGGCAACAT 57.431 29.630 0.00 0.00 31.32 2.71
3119 5455 6.840780 AAAATTGCAAAGATACTACAGCCT 57.159 33.333 1.71 0.00 0.00 4.58
3128 5464 2.145397 TACTACAGCCTCCTGACCAG 57.855 55.000 0.00 0.00 41.77 4.00
3136 5472 1.406614 GCCTCCTGACCAGATCACAAG 60.407 57.143 0.00 0.00 32.37 3.16
3149 5485 8.478775 ACCAGATCACAAGCATAGTATTAGTA 57.521 34.615 0.00 0.00 0.00 1.82
3176 5512 8.772250 TCATCTACTGAGTTGATATTTCCCTTT 58.228 33.333 9.11 0.00 0.00 3.11
3181 5517 7.405292 ACTGAGTTGATATTTCCCTTTGATCA 58.595 34.615 0.00 0.00 0.00 2.92
3200 5536 6.950842 TGATCAGAATTCAGATGTAACTGGT 58.049 36.000 17.14 0.00 38.31 4.00
3204 5540 9.911788 ATCAGAATTCAGATGTAACTGGTTTAT 57.088 29.630 12.13 0.00 38.31 1.40
3211 5547 6.150976 TCAGATGTAACTGGTTTATGCCTTTG 59.849 38.462 0.00 0.00 38.31 2.77
3229 5565 1.627864 TGCACTGCCTACTGTACTGA 58.372 50.000 6.77 0.00 0.00 3.41
3230 5566 1.546029 TGCACTGCCTACTGTACTGAG 59.454 52.381 6.77 0.00 0.00 3.35
3270 5606 7.806409 ATATTGCTATTGTCTGTGCATTACA 57.194 32.000 0.00 0.00 37.78 2.41
3285 5621 6.092944 TGTGCATTACAGAGGTTAATTAACCG 59.907 38.462 32.01 23.49 46.14 4.44
3300 5636 2.871096 AACCGCTGAAGGGACATTAA 57.129 45.000 0.00 0.00 35.02 1.40
3302 5638 1.006832 CCGCTGAAGGGACATTAACG 58.993 55.000 0.00 0.00 0.00 3.18
3310 5646 3.757745 AGGGACATTAACGAAATTGCG 57.242 42.857 3.68 3.68 37.29 4.85
3311 5647 2.159435 AGGGACATTAACGAAATTGCGC 60.159 45.455 5.51 0.00 33.86 6.09
3318 5654 1.882198 AACGAAATTGCGCTTCATCG 58.118 45.000 19.26 19.26 36.45 3.84
3322 5658 3.120477 ACGAAATTGCGCTTCATCGTTTA 60.120 39.130 20.30 0.00 40.22 2.01
3323 5659 3.235179 CGAAATTGCGCTTCATCGTTTAC 59.765 43.478 9.73 0.00 0.00 2.01
3324 5660 4.403453 GAAATTGCGCTTCATCGTTTACT 58.597 39.130 9.73 0.00 0.00 2.24
3325 5661 3.658351 ATTGCGCTTCATCGTTTACTC 57.342 42.857 9.73 0.00 0.00 2.59
3326 5662 2.363788 TGCGCTTCATCGTTTACTCT 57.636 45.000 9.73 0.00 0.00 3.24
3328 5664 2.411748 TGCGCTTCATCGTTTACTCTTG 59.588 45.455 9.73 0.00 0.00 3.02
3329 5665 2.666508 GCGCTTCATCGTTTACTCTTGA 59.333 45.455 0.00 0.00 0.00 3.02
3370 5707 5.830457 TGTTCTGTGTTATTTGAATGTGGGA 59.170 36.000 0.00 0.00 0.00 4.37
3373 5710 6.744112 TCTGTGTTATTTGAATGTGGGAAAC 58.256 36.000 0.00 0.00 0.00 2.78
3374 5711 6.322456 TCTGTGTTATTTGAATGTGGGAAACA 59.678 34.615 0.00 0.00 44.79 2.83
3375 5712 6.511416 TGTGTTATTTGAATGTGGGAAACAG 58.489 36.000 0.00 0.00 43.64 3.16
3379 5716 9.521841 TGTTATTTGAATGTGGGAAACAGTATA 57.478 29.630 0.00 0.00 43.64 1.47
3462 5799 0.179040 ACGTGGTTGGTTTCGGTGAT 60.179 50.000 0.00 0.00 0.00 3.06
3486 5823 2.356535 GGAGTTCATGGAGCAGTGGAAT 60.357 50.000 0.00 0.00 0.00 3.01
3664 6001 3.299804 GCGCCGACTTGTTAATAAAAAGC 59.700 43.478 0.00 0.00 0.00 3.51
3700 6037 1.545582 CTACTGGCAAAATGGTGGGTG 59.454 52.381 0.00 0.00 0.00 4.61
3761 6098 1.817099 GCCGAAGAGCTGGGTGATG 60.817 63.158 0.00 0.00 0.00 3.07
3766 6103 2.419159 CGAAGAGCTGGGTGATGATTGA 60.419 50.000 0.00 0.00 0.00 2.57
3772 6109 3.201487 AGCTGGGTGATGATTGATGAAGA 59.799 43.478 0.00 0.00 0.00 2.87
3791 6128 4.510167 AGAGGAGGTGAAATATTGGTGG 57.490 45.455 0.00 0.00 0.00 4.61
3821 6158 6.594937 TGTCGTTAGTTTTGTAGAAAGTTGGT 59.405 34.615 0.00 0.00 0.00 3.67
3865 6202 4.159506 CGGAAGAGGGCAAATTTATTTGGA 59.840 41.667 14.97 0.00 45.44 3.53
3879 6216 5.527026 TTATTTGGAAAAATGGGGGCATT 57.473 34.783 0.00 0.00 0.00 3.56
4007 6344 4.007659 TGCCTCCCGTTATTTTCTTCTTC 58.992 43.478 0.00 0.00 0.00 2.87
4008 6345 4.262617 GCCTCCCGTTATTTTCTTCTTCT 58.737 43.478 0.00 0.00 0.00 2.85
4009 6346 4.700692 GCCTCCCGTTATTTTCTTCTTCTT 59.299 41.667 0.00 0.00 0.00 2.52
4010 6347 5.392057 GCCTCCCGTTATTTTCTTCTTCTTG 60.392 44.000 0.00 0.00 0.00 3.02
4014 6351 5.154222 CCGTTATTTTCTTCTTCTTGCACC 58.846 41.667 0.00 0.00 0.00 5.01
4015 6352 5.048713 CCGTTATTTTCTTCTTCTTGCACCT 60.049 40.000 0.00 0.00 0.00 4.00
4016 6353 6.080406 CGTTATTTTCTTCTTCTTGCACCTC 58.920 40.000 0.00 0.00 0.00 3.85
4051 6388 3.118075 TGTGTTTCTCACCCAACTGATGA 60.118 43.478 0.00 0.00 45.61 2.92
4075 6412 1.000163 GAACCTCTGTCAGCGACTCAA 60.000 52.381 9.49 0.00 33.15 3.02
4077 6414 1.269831 ACCTCTGTCAGCGACTCAAAC 60.270 52.381 9.49 0.00 33.15 2.93
4099 6436 3.069074 GGAACCAAACGTGTAAACCAC 57.931 47.619 0.00 0.00 40.89 4.16
4100 6437 2.223548 GGAACCAAACGTGTAAACCACC 60.224 50.000 0.00 0.00 41.26 4.61
4101 6438 1.391577 ACCAAACGTGTAAACCACCC 58.608 50.000 0.00 0.00 41.26 4.61
4102 6439 1.340795 ACCAAACGTGTAAACCACCCA 60.341 47.619 0.00 0.00 41.26 4.51
4103 6440 1.749634 CCAAACGTGTAAACCACCCAA 59.250 47.619 0.00 0.00 41.26 4.12
4106 6443 3.719173 AACGTGTAAACCACCCAATTG 57.281 42.857 0.00 0.00 41.26 2.32
4107 6444 2.933573 ACGTGTAAACCACCCAATTGA 58.066 42.857 7.12 0.00 41.26 2.57
4109 6446 4.653868 ACGTGTAAACCACCCAATTGATA 58.346 39.130 7.12 0.00 41.26 2.15
4111 6448 4.456222 CGTGTAAACCACCCAATTGATACA 59.544 41.667 7.12 2.37 41.26 2.29
4118 6602 1.852965 ACCCAATTGATACAGGGAGGG 59.147 52.381 7.12 0.00 44.30 4.30
4152 6636 3.432186 GCACAAGGCAGAAACGGT 58.568 55.556 0.00 0.00 43.97 4.83
4153 6637 1.733526 GCACAAGGCAGAAACGGTT 59.266 52.632 0.00 0.00 43.97 4.44
4154 6638 0.102300 GCACAAGGCAGAAACGGTTT 59.898 50.000 5.68 5.68 43.97 3.27
4155 6639 1.470805 GCACAAGGCAGAAACGGTTTT 60.471 47.619 7.65 0.00 43.97 2.43
4156 6640 2.459934 CACAAGGCAGAAACGGTTTTC 58.540 47.619 7.65 1.74 41.44 2.29
4166 6650 3.878245 GAAACGGTTTTCTTGAGCTCAG 58.122 45.455 17.43 11.30 38.52 3.35
4168 6655 2.213499 ACGGTTTTCTTGAGCTCAGTG 58.787 47.619 17.43 13.82 0.00 3.66
4169 6656 2.158957 ACGGTTTTCTTGAGCTCAGTGA 60.159 45.455 17.43 15.90 0.00 3.41
4173 6660 4.320057 GGTTTTCTTGAGCTCAGTGACATG 60.320 45.833 17.43 0.00 0.00 3.21
4174 6661 2.090400 TCTTGAGCTCAGTGACATGC 57.910 50.000 17.43 0.00 0.00 4.06
4178 6665 0.805322 GAGCTCAGTGACATGCCTCG 60.805 60.000 9.40 0.00 0.00 4.63
4190 6677 4.217334 TGACATGCCTCGCTTTTATTTTCA 59.783 37.500 0.00 0.00 0.00 2.69
4194 6681 3.319405 TGCCTCGCTTTTATTTTCACCAA 59.681 39.130 0.00 0.00 0.00 3.67
4202 6690 5.735070 GCTTTTATTTTCACCAACGTCACCT 60.735 40.000 0.00 0.00 0.00 4.00
4317 7552 1.965930 GTGCACATGGTCGCAGGAA 60.966 57.895 13.17 0.00 39.20 3.36
4330 7565 0.887387 GCAGGAAGCGGTACAACCAA 60.887 55.000 0.00 0.00 38.47 3.67
4387 7622 2.044555 CGACCACGACCTCTGCCTA 61.045 63.158 0.00 0.00 42.66 3.93
4389 7624 0.386113 GACCACGACCTCTGCCTATC 59.614 60.000 0.00 0.00 0.00 2.08
4431 7666 4.813346 GGGAACCGCCTGAAAAGA 57.187 55.556 0.00 0.00 40.86 2.52
4432 7667 3.266240 GGGAACCGCCTGAAAAGAT 57.734 52.632 0.00 0.00 40.86 2.40
4433 7668 1.545841 GGGAACCGCCTGAAAAGATT 58.454 50.000 0.00 0.00 40.86 2.40
4434 7669 1.893137 GGGAACCGCCTGAAAAGATTT 59.107 47.619 0.00 0.00 40.86 2.17
4435 7670 3.086282 GGGAACCGCCTGAAAAGATTTA 58.914 45.455 0.00 0.00 40.86 1.40
4436 7671 3.128764 GGGAACCGCCTGAAAAGATTTAG 59.871 47.826 0.00 0.00 40.86 1.85
4437 7672 3.756963 GGAACCGCCTGAAAAGATTTAGT 59.243 43.478 0.00 0.00 0.00 2.24
4438 7673 4.379499 GGAACCGCCTGAAAAGATTTAGTG 60.379 45.833 0.00 0.00 0.00 2.74
4439 7674 4.015872 ACCGCCTGAAAAGATTTAGTGA 57.984 40.909 0.00 0.00 0.00 3.41
4440 7675 4.003648 ACCGCCTGAAAAGATTTAGTGAG 58.996 43.478 0.00 0.00 0.00 3.51
4441 7676 3.375299 CCGCCTGAAAAGATTTAGTGAGG 59.625 47.826 0.00 0.00 0.00 3.86
4442 7677 3.181506 CGCCTGAAAAGATTTAGTGAGGC 60.182 47.826 0.00 0.00 41.17 4.70
4443 7678 3.129462 GCCTGAAAAGATTTAGTGAGGCC 59.871 47.826 0.00 0.00 39.09 5.19
4444 7679 4.593956 CCTGAAAAGATTTAGTGAGGCCT 58.406 43.478 3.86 3.86 0.00 5.19
4445 7680 4.397417 CCTGAAAAGATTTAGTGAGGCCTG 59.603 45.833 12.00 0.00 0.00 4.85
4446 7681 4.335416 TGAAAAGATTTAGTGAGGCCTGG 58.665 43.478 12.00 0.00 0.00 4.45
4447 7682 2.426842 AAGATTTAGTGAGGCCTGGC 57.573 50.000 12.00 11.05 0.00 4.85
4448 7683 0.179000 AGATTTAGTGAGGCCTGGCG 59.821 55.000 12.00 0.00 0.00 5.69
4449 7684 0.815615 GATTTAGTGAGGCCTGGCGG 60.816 60.000 12.00 0.00 0.00 6.13
4450 7685 1.271840 ATTTAGTGAGGCCTGGCGGA 61.272 55.000 12.00 0.00 0.00 5.54
4451 7686 1.485294 TTTAGTGAGGCCTGGCGGAA 61.485 55.000 12.00 0.00 0.00 4.30
4452 7687 2.180159 TTAGTGAGGCCTGGCGGAAC 62.180 60.000 12.00 10.16 0.00 3.62
4472 7707 2.875296 CCAAGTGGGTTCTCAAATCCA 58.125 47.619 0.00 0.00 43.63 3.41
4473 7708 2.821969 CCAAGTGGGTTCTCAAATCCAG 59.178 50.000 0.00 0.00 46.47 3.86
4474 7709 3.498481 CCAAGTGGGTTCTCAAATCCAGA 60.498 47.826 0.00 0.00 46.47 3.86
4475 7710 4.144297 CAAGTGGGTTCTCAAATCCAGAA 58.856 43.478 0.00 0.00 46.47 3.02
4476 7711 4.453480 AGTGGGTTCTCAAATCCAGAAA 57.547 40.909 0.00 0.00 46.47 2.52
4477 7712 4.401925 AGTGGGTTCTCAAATCCAGAAAG 58.598 43.478 0.00 0.00 46.47 2.62
4478 7713 3.507622 GTGGGTTCTCAAATCCAGAAAGG 59.492 47.826 0.00 0.00 46.47 3.11
4479 7714 3.140144 TGGGTTCTCAAATCCAGAAAGGT 59.860 43.478 0.00 0.00 40.89 3.50
4480 7715 4.352595 TGGGTTCTCAAATCCAGAAAGGTA 59.647 41.667 0.00 0.00 40.89 3.08
4481 7716 4.944317 GGGTTCTCAAATCCAGAAAGGTAG 59.056 45.833 0.00 0.00 35.54 3.18
4482 7717 5.515008 GGGTTCTCAAATCCAGAAAGGTAGT 60.515 44.000 0.00 0.00 35.54 2.73
4483 7718 5.412904 GGTTCTCAAATCCAGAAAGGTAGTG 59.587 44.000 0.00 0.00 39.02 2.74
4484 7719 5.825593 TCTCAAATCCAGAAAGGTAGTGT 57.174 39.130 0.00 0.00 39.02 3.55
4485 7720 6.187727 TCTCAAATCCAGAAAGGTAGTGTT 57.812 37.500 0.00 0.00 39.02 3.32
4486 7721 5.997746 TCTCAAATCCAGAAAGGTAGTGTTG 59.002 40.000 0.00 0.00 39.02 3.33
4487 7722 5.070001 TCAAATCCAGAAAGGTAGTGTTGG 58.930 41.667 0.00 0.00 39.02 3.77
4488 7723 4.993705 AATCCAGAAAGGTAGTGTTGGA 57.006 40.909 0.00 0.00 38.90 3.53
4489 7724 4.993705 ATCCAGAAAGGTAGTGTTGGAA 57.006 40.909 0.00 0.00 38.14 3.53
4490 7725 4.993705 TCCAGAAAGGTAGTGTTGGAAT 57.006 40.909 0.00 0.00 39.02 3.01
4491 7726 4.906618 TCCAGAAAGGTAGTGTTGGAATC 58.093 43.478 0.00 0.00 39.02 2.52
4492 7727 4.349636 TCCAGAAAGGTAGTGTTGGAATCA 59.650 41.667 0.00 0.00 39.02 2.57
4493 7728 5.070001 CCAGAAAGGTAGTGTTGGAATCAA 58.930 41.667 0.00 0.00 0.00 2.57
4494 7729 5.182001 CCAGAAAGGTAGTGTTGGAATCAAG 59.818 44.000 0.00 0.00 32.92 3.02
4495 7730 5.182001 CAGAAAGGTAGTGTTGGAATCAAGG 59.818 44.000 0.00 0.00 32.92 3.61
4496 7731 4.724279 AAGGTAGTGTTGGAATCAAGGT 57.276 40.909 0.00 0.00 32.92 3.50
4497 7732 4.724279 AGGTAGTGTTGGAATCAAGGTT 57.276 40.909 0.00 0.00 32.92 3.50
4498 7733 5.836024 AGGTAGTGTTGGAATCAAGGTTA 57.164 39.130 0.00 0.00 32.92 2.85
4499 7734 6.195600 AGGTAGTGTTGGAATCAAGGTTAA 57.804 37.500 0.00 0.00 32.92 2.01
4500 7735 6.790319 AGGTAGTGTTGGAATCAAGGTTAAT 58.210 36.000 0.00 0.00 32.92 1.40
4501 7736 6.659242 AGGTAGTGTTGGAATCAAGGTTAATG 59.341 38.462 0.00 0.00 32.92 1.90
4502 7737 6.657541 GGTAGTGTTGGAATCAAGGTTAATGA 59.342 38.462 0.00 0.00 32.92 2.57
4503 7738 7.339466 GGTAGTGTTGGAATCAAGGTTAATGAT 59.661 37.037 0.00 0.00 39.15 2.45
4504 7739 7.161773 AGTGTTGGAATCAAGGTTAATGATG 57.838 36.000 0.00 0.00 37.58 3.07
4505 7740 6.947733 AGTGTTGGAATCAAGGTTAATGATGA 59.052 34.615 0.00 0.00 37.58 2.92
4506 7741 7.616935 AGTGTTGGAATCAAGGTTAATGATGAT 59.383 33.333 0.00 0.00 37.58 2.45
4507 7742 8.902806 GTGTTGGAATCAAGGTTAATGATGATA 58.097 33.333 0.00 0.00 37.58 2.15
4508 7743 9.645128 TGTTGGAATCAAGGTTAATGATGATAT 57.355 29.630 0.00 0.00 37.58 1.63
4511 7746 9.081204 TGGAATCAAGGTTAATGATGATATTGG 57.919 33.333 0.00 0.00 37.58 3.16
4512 7747 9.082313 GGAATCAAGGTTAATGATGATATTGGT 57.918 33.333 0.00 0.00 37.58 3.67
4514 7749 9.645128 AATCAAGGTTAATGATGATATTGGTCA 57.355 29.630 0.00 0.00 37.58 4.02
4515 7750 9.818270 ATCAAGGTTAATGATGATATTGGTCAT 57.182 29.630 0.00 0.00 41.36 3.06
4516 7751 9.645128 TCAAGGTTAATGATGATATTGGTCATT 57.355 29.630 12.69 12.69 43.06 2.57
4529 7764 9.460019 TGATATTGGTCATTATTTTCAGACACA 57.540 29.630 0.00 0.00 32.79 3.72
4530 7765 9.722056 GATATTGGTCATTATTTTCAGACACAC 57.278 33.333 0.00 0.00 32.79 3.82
4531 7766 6.951062 TTGGTCATTATTTTCAGACACACA 57.049 33.333 0.00 0.00 32.79 3.72
4532 7767 6.951062 TGGTCATTATTTTCAGACACACAA 57.049 33.333 0.00 0.00 32.79 3.33
4533 7768 6.969366 TGGTCATTATTTTCAGACACACAAG 58.031 36.000 0.00 0.00 32.79 3.16
4534 7769 6.016360 TGGTCATTATTTTCAGACACACAAGG 60.016 38.462 0.00 0.00 32.79 3.61
4535 7770 6.381801 GTCATTATTTTCAGACACACAAGGG 58.618 40.000 0.00 0.00 0.00 3.95
4536 7771 6.016276 GTCATTATTTTCAGACACACAAGGGT 60.016 38.462 0.00 0.00 0.00 4.34
4537 7772 6.549364 TCATTATTTTCAGACACACAAGGGTT 59.451 34.615 0.00 0.00 0.00 4.11
4538 7773 6.783708 TTATTTTCAGACACACAAGGGTTT 57.216 33.333 0.00 0.00 0.00 3.27
4539 7774 4.448537 TTTTCAGACACACAAGGGTTTG 57.551 40.909 0.00 0.00 40.24 2.93
4540 7775 3.358111 TTCAGACACACAAGGGTTTGA 57.642 42.857 0.00 0.00 37.73 2.69
4541 7776 2.917933 TCAGACACACAAGGGTTTGAG 58.082 47.619 0.00 0.00 37.73 3.02
4542 7777 2.503765 TCAGACACACAAGGGTTTGAGA 59.496 45.455 0.00 0.00 37.73 3.27
4543 7778 2.614057 CAGACACACAAGGGTTTGAGAC 59.386 50.000 0.00 0.00 37.73 3.36
4544 7779 2.238646 AGACACACAAGGGTTTGAGACA 59.761 45.455 0.00 0.00 37.73 3.41
4545 7780 3.013921 GACACACAAGGGTTTGAGACAA 58.986 45.455 0.00 0.00 37.73 3.18
4546 7781 3.016736 ACACACAAGGGTTTGAGACAAG 58.983 45.455 0.00 0.00 37.73 3.16
4547 7782 2.358898 CACACAAGGGTTTGAGACAAGG 59.641 50.000 0.00 0.00 37.73 3.61
4548 7783 2.241176 ACACAAGGGTTTGAGACAAGGA 59.759 45.455 0.00 0.00 37.73 3.36
4549 7784 2.880890 CACAAGGGTTTGAGACAAGGAG 59.119 50.000 0.00 0.00 37.73 3.69
4550 7785 2.777692 ACAAGGGTTTGAGACAAGGAGA 59.222 45.455 0.00 0.00 37.73 3.71
4551 7786 3.395941 ACAAGGGTTTGAGACAAGGAGAT 59.604 43.478 0.00 0.00 37.73 2.75
4552 7787 4.141158 ACAAGGGTTTGAGACAAGGAGATT 60.141 41.667 0.00 0.00 37.73 2.40
4553 7788 4.293662 AGGGTTTGAGACAAGGAGATTC 57.706 45.455 0.00 0.00 0.00 2.52
4554 7789 3.009584 AGGGTTTGAGACAAGGAGATTCC 59.990 47.826 0.00 0.00 36.58 3.01
4555 7790 3.244911 GGGTTTGAGACAAGGAGATTCCA 60.245 47.826 0.00 0.00 39.61 3.53
4556 7791 4.568592 GGGTTTGAGACAAGGAGATTCCAT 60.569 45.833 0.00 0.00 39.61 3.41
4557 7792 4.397417 GGTTTGAGACAAGGAGATTCCATG 59.603 45.833 0.00 0.00 40.81 3.66
4569 7804 4.947645 GAGATTCCATGTCTCCTCTCTTG 58.052 47.826 1.25 0.00 36.87 3.02
4570 7805 4.360889 AGATTCCATGTCTCCTCTCTTGT 58.639 43.478 0.00 0.00 0.00 3.16
4571 7806 4.782156 AGATTCCATGTCTCCTCTCTTGTT 59.218 41.667 0.00 0.00 0.00 2.83
4572 7807 4.982241 TTCCATGTCTCCTCTCTTGTTT 57.018 40.909 0.00 0.00 0.00 2.83
4573 7808 6.441924 AGATTCCATGTCTCCTCTCTTGTTTA 59.558 38.462 0.00 0.00 0.00 2.01
4574 7809 6.433847 TTCCATGTCTCCTCTCTTGTTTAA 57.566 37.500 0.00 0.00 0.00 1.52
4575 7810 5.794894 TCCATGTCTCCTCTCTTGTTTAAC 58.205 41.667 0.00 0.00 0.00 2.01
4576 7811 5.544176 TCCATGTCTCCTCTCTTGTTTAACT 59.456 40.000 0.00 0.00 0.00 2.24
4577 7812 6.724441 TCCATGTCTCCTCTCTTGTTTAACTA 59.276 38.462 0.00 0.00 0.00 2.24
4578 7813 7.038659 CCATGTCTCCTCTCTTGTTTAACTAG 58.961 42.308 0.28 0.28 0.00 2.57
4579 7814 7.310113 CCATGTCTCCTCTCTTGTTTAACTAGT 60.310 40.741 6.46 0.00 0.00 2.57
4580 7815 8.740906 CATGTCTCCTCTCTTGTTTAACTAGTA 58.259 37.037 0.00 0.00 0.00 1.82
4581 7816 8.701908 TGTCTCCTCTCTTGTTTAACTAGTAA 57.298 34.615 0.00 0.00 0.00 2.24
4582 7817 8.794553 TGTCTCCTCTCTTGTTTAACTAGTAAG 58.205 37.037 0.00 0.00 0.00 2.34
4583 7818 9.012161 GTCTCCTCTCTTGTTTAACTAGTAAGA 57.988 37.037 0.00 0.00 0.00 2.10
4584 7819 9.756571 TCTCCTCTCTTGTTTAACTAGTAAGAT 57.243 33.333 0.00 0.00 0.00 2.40
4585 7820 9.796120 CTCCTCTCTTGTTTAACTAGTAAGATG 57.204 37.037 0.00 0.00 0.00 2.90
4586 7821 8.251721 TCCTCTCTTGTTTAACTAGTAAGATGC 58.748 37.037 0.00 0.00 0.00 3.91
4587 7822 7.492994 CCTCTCTTGTTTAACTAGTAAGATGCC 59.507 40.741 0.00 0.00 0.00 4.40
4588 7823 7.328737 TCTCTTGTTTAACTAGTAAGATGCCC 58.671 38.462 0.00 0.00 0.00 5.36
4589 7824 6.103997 TCTTGTTTAACTAGTAAGATGCCCG 58.896 40.000 0.00 0.00 0.00 6.13
4590 7825 5.410355 TGTTTAACTAGTAAGATGCCCGT 57.590 39.130 0.00 0.00 0.00 5.28
4591 7826 5.172934 TGTTTAACTAGTAAGATGCCCGTG 58.827 41.667 0.00 0.00 0.00 4.94
4592 7827 2.311124 AACTAGTAAGATGCCCGTGC 57.689 50.000 0.00 0.00 38.26 5.34
4593 7828 1.486211 ACTAGTAAGATGCCCGTGCT 58.514 50.000 0.00 0.00 38.71 4.40
4594 7829 2.662866 ACTAGTAAGATGCCCGTGCTA 58.337 47.619 0.00 0.00 38.71 3.49
4595 7830 3.231818 ACTAGTAAGATGCCCGTGCTAT 58.768 45.455 0.00 0.00 38.71 2.97
4596 7831 2.533266 AGTAAGATGCCCGTGCTATG 57.467 50.000 0.00 0.00 38.71 2.23
4597 7832 0.868406 GTAAGATGCCCGTGCTATGC 59.132 55.000 0.00 0.00 38.71 3.14
4598 7833 0.758734 TAAGATGCCCGTGCTATGCT 59.241 50.000 0.00 0.00 38.71 3.79
4599 7834 0.758734 AAGATGCCCGTGCTATGCTA 59.241 50.000 0.00 0.00 38.71 3.49
4600 7835 0.034059 AGATGCCCGTGCTATGCTAC 59.966 55.000 0.00 0.00 38.71 3.58
4601 7836 1.284982 GATGCCCGTGCTATGCTACG 61.285 60.000 0.00 0.00 39.83 3.51
4607 7842 2.134201 CGTGCTATGCTACGGAATCA 57.866 50.000 0.00 0.00 36.71 2.57
4608 7843 1.787155 CGTGCTATGCTACGGAATCAC 59.213 52.381 0.00 0.00 36.71 3.06
4609 7844 2.798145 CGTGCTATGCTACGGAATCACA 60.798 50.000 0.00 0.00 36.71 3.58
4610 7845 3.393800 GTGCTATGCTACGGAATCACAT 58.606 45.455 0.00 0.00 0.00 3.21
4611 7846 3.185188 GTGCTATGCTACGGAATCACATG 59.815 47.826 0.00 0.00 0.00 3.21
4612 7847 3.069443 TGCTATGCTACGGAATCACATGA 59.931 43.478 0.00 0.00 0.00 3.07
4613 7848 4.058124 GCTATGCTACGGAATCACATGAA 58.942 43.478 0.00 0.00 0.00 2.57
4614 7849 4.511454 GCTATGCTACGGAATCACATGAAA 59.489 41.667 0.00 0.00 0.00 2.69
4615 7850 5.180117 GCTATGCTACGGAATCACATGAAAT 59.820 40.000 0.00 0.00 0.00 2.17
4616 7851 6.368791 GCTATGCTACGGAATCACATGAAATA 59.631 38.462 0.00 0.00 0.00 1.40
4617 7852 7.095229 GCTATGCTACGGAATCACATGAAATAA 60.095 37.037 0.00 0.00 0.00 1.40
4618 7853 6.993786 TGCTACGGAATCACATGAAATAAA 57.006 33.333 0.00 0.00 0.00 1.40
4619 7854 7.566760 TGCTACGGAATCACATGAAATAAAT 57.433 32.000 0.00 0.00 0.00 1.40
4620 7855 7.995289 TGCTACGGAATCACATGAAATAAATT 58.005 30.769 0.00 0.00 0.00 1.82
4621 7856 7.914871 TGCTACGGAATCACATGAAATAAATTG 59.085 33.333 0.00 0.00 0.00 2.32
4622 7857 7.379529 GCTACGGAATCACATGAAATAAATTGG 59.620 37.037 0.00 0.00 0.00 3.16
4623 7858 7.403312 ACGGAATCACATGAAATAAATTGGA 57.597 32.000 0.00 0.00 0.00 3.53
4624 7859 7.835822 ACGGAATCACATGAAATAAATTGGAA 58.164 30.769 0.00 0.00 0.00 3.53
4625 7860 8.477256 ACGGAATCACATGAAATAAATTGGAAT 58.523 29.630 0.00 0.00 0.00 3.01
4626 7861 8.971321 CGGAATCACATGAAATAAATTGGAATC 58.029 33.333 0.00 0.00 0.00 2.52
4627 7862 9.820725 GGAATCACATGAAATAAATTGGAATCA 57.179 29.630 0.00 0.00 0.00 2.57
4631 7866 9.993454 TCACATGAAATAAATTGGAATCACAAA 57.007 25.926 0.00 0.00 33.48 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.594131 CGGGAGATGGTGGTCTATGTA 58.406 52.381 0.00 0.00 0.00 2.29
28 29 7.340232 TGAGGATAAAAGGAGGATGTTTGAATG 59.660 37.037 0.00 0.00 0.00 2.67
182 200 5.406175 GTGGTACTACTGCGTATTTGAAACA 59.594 40.000 1.48 0.00 0.00 2.83
191 209 4.524316 AAATGTGTGGTACTACTGCGTA 57.476 40.909 10.95 0.00 0.00 4.42
195 213 7.272978 AGCCTAATAAATGTGTGGTACTACTG 58.727 38.462 10.95 0.00 0.00 2.74
260 278 5.622770 AAAACAAGATGATGTTCGGTACC 57.377 39.130 0.16 0.16 42.49 3.34
294 315 6.111768 AGCAGACGTTTGATTAGCAATAAG 57.888 37.500 10.75 0.00 36.15 1.73
332 2461 1.442526 GCAGAGCCCCACAATGATCG 61.443 60.000 0.00 0.00 0.00 3.69
333 2462 0.106819 AGCAGAGCCCCACAATGATC 60.107 55.000 0.00 0.00 0.00 2.92
338 2467 1.114722 CCAAAAGCAGAGCCCCACAA 61.115 55.000 0.00 0.00 0.00 3.33
364 2532 4.303282 CGATTCCGTGGAATTTTTGGTTT 58.697 39.130 14.99 0.00 43.98 3.27
484 2652 1.399089 GAAGAGACGGAGAAGAGACGG 59.601 57.143 0.00 0.00 0.00 4.79
494 2662 2.683933 GGCTGGGGAAGAGACGGA 60.684 66.667 0.00 0.00 0.00 4.69
497 2665 2.683933 TCGGGCTGGGGAAGAGAC 60.684 66.667 0.00 0.00 0.00 3.36
590 2758 2.261671 GTGGACGCGATGGAGTGT 59.738 61.111 15.93 0.00 37.59 3.55
625 2793 1.004918 GATCCATACCCGCGGAAGG 60.005 63.158 30.73 21.67 34.22 3.46
626 2794 0.319900 CTGATCCATACCCGCGGAAG 60.320 60.000 30.73 14.21 34.22 3.46
627 2795 1.745890 CTGATCCATACCCGCGGAA 59.254 57.895 30.73 15.54 34.22 4.30
629 2797 2.159819 CTCCTGATCCATACCCGCGG 62.160 65.000 21.04 21.04 0.00 6.46
657 2830 1.166989 GGACGTGCCGGGATTTTTAA 58.833 50.000 2.18 0.00 0.00 1.52
658 2831 0.036448 TGGACGTGCCGGGATTTTTA 59.964 50.000 2.18 0.00 40.66 1.52
661 2834 2.359478 GTGGACGTGCCGGGATTT 60.359 61.111 2.18 0.00 40.66 2.17
662 2835 4.404098 GGTGGACGTGCCGGGATT 62.404 66.667 2.18 0.00 40.66 3.01
668 2841 4.699522 GAGGTGGGTGGACGTGCC 62.700 72.222 4.04 0.43 37.10 5.01
712 2885 4.406003 GGTTGGTAGAGCCTAAAGAGATCA 59.594 45.833 0.00 0.00 38.35 2.92
713 2886 4.651962 AGGTTGGTAGAGCCTAAAGAGATC 59.348 45.833 0.00 0.00 38.35 2.75
798 2971 2.046892 CAGGCCACTCCAAGGACG 60.047 66.667 5.01 0.00 39.93 4.79
877 3062 3.777106 ATCCAGACAAGAAGAGCACAA 57.223 42.857 0.00 0.00 0.00 3.33
943 3128 6.287589 AGTAGAAACCTACAGACAATCCAG 57.712 41.667 0.00 0.00 39.12 3.86
1589 3789 0.441533 GCATGAACACTGACAGCTCG 59.558 55.000 1.25 0.00 0.00 5.03
1618 3818 7.759433 ACTCGCCATAGGAAACATTTTTATTTG 59.241 33.333 0.00 0.00 0.00 2.32
1633 3833 2.589798 TTTACCGAACTCGCCATAGG 57.410 50.000 0.00 0.00 38.18 2.57
1821 4021 5.646577 ATAGCCTACTGTTCGATCATACC 57.353 43.478 0.00 0.00 0.00 2.73
1909 4109 6.734104 AGAGAATTACACAAGAATCTGCAC 57.266 37.500 0.00 0.00 0.00 4.57
1955 4155 6.237808 CCACAAAAATCAAACAGAAAAGGTCG 60.238 38.462 0.00 0.00 0.00 4.79
1956 4156 6.816140 TCCACAAAAATCAAACAGAAAAGGTC 59.184 34.615 0.00 0.00 0.00 3.85
1960 4160 7.967303 GCATTTCCACAAAAATCAAACAGAAAA 59.033 29.630 0.00 0.00 0.00 2.29
2062 4266 1.971481 TGCAGTGAGTTGTGATTGCT 58.029 45.000 0.00 0.00 33.00 3.91
2063 4267 2.033801 AGTTGCAGTGAGTTGTGATTGC 59.966 45.455 0.00 0.00 0.00 3.56
2076 4280 2.354503 CCATAGAGCAGTGAGTTGCAGT 60.355 50.000 0.00 0.00 46.47 4.40
2077 4281 2.277969 CCATAGAGCAGTGAGTTGCAG 58.722 52.381 0.00 0.00 46.47 4.41
2078 4282 1.065926 CCCATAGAGCAGTGAGTTGCA 60.066 52.381 0.00 0.00 46.47 4.08
2079 4283 1.065854 ACCCATAGAGCAGTGAGTTGC 60.066 52.381 0.00 0.00 44.41 4.17
2116 4320 6.664515 CAAAACTTTCGGTAGTGCAATCTTA 58.335 36.000 0.00 0.00 0.00 2.10
2119 4323 3.668656 GCAAAACTTTCGGTAGTGCAATC 59.331 43.478 0.00 0.00 37.61 2.67
2131 4335 7.742151 CCAATATTTTGGCTAGCAAAACTTTC 58.258 34.615 17.07 0.00 45.71 2.62
2158 4362 5.904362 ACTCATGGATAAGCAAAACCTTC 57.096 39.130 0.00 0.00 0.00 3.46
2182 4387 7.870445 TGCTTTATTTTTCCAACAATGTCTACC 59.130 33.333 0.00 0.00 0.00 3.18
2183 4388 8.810652 TGCTTTATTTTTCCAACAATGTCTAC 57.189 30.769 0.00 0.00 0.00 2.59
2184 4389 8.855110 TCTGCTTTATTTTTCCAACAATGTCTA 58.145 29.630 0.00 0.00 0.00 2.59
2185 4390 7.725251 TCTGCTTTATTTTTCCAACAATGTCT 58.275 30.769 0.00 0.00 0.00 3.41
2194 4399 5.862845 TGCCAATTCTGCTTTATTTTTCCA 58.137 33.333 0.00 0.00 0.00 3.53
2271 4477 7.790782 ACCAAATTTGACCTTACCAATATGT 57.209 32.000 19.86 0.77 0.00 2.29
2380 4589 9.586435 CTGACATGAACTTAAAGAAAAACCTTT 57.414 29.630 0.00 0.00 39.46 3.11
2444 4653 8.787852 GCTGCTAAATAACTATTCCTGCTAAAT 58.212 33.333 0.00 0.00 0.00 1.40
2768 5103 7.706179 TCCATTCCGATTCTTTGCATTTAAATC 59.294 33.333 0.00 0.00 0.00 2.17
2817 5152 8.976471 CATTAAGAGAGTAATGTATGCAGACAG 58.024 37.037 20.16 0.00 36.91 3.51
2818 5153 8.695456 TCATTAAGAGAGTAATGTATGCAGACA 58.305 33.333 17.74 17.74 40.74 3.41
2819 5154 9.534565 TTCATTAAGAGAGTAATGTATGCAGAC 57.465 33.333 4.05 4.05 40.74 3.51
2820 5155 9.755804 CTTCATTAAGAGAGTAATGTATGCAGA 57.244 33.333 0.00 0.00 40.74 4.26
2821 5156 8.494347 GCTTCATTAAGAGAGTAATGTATGCAG 58.506 37.037 0.00 0.00 40.74 4.41
2822 5157 8.206867 AGCTTCATTAAGAGAGTAATGTATGCA 58.793 33.333 0.00 0.00 40.74 3.96
2823 5158 8.600449 AGCTTCATTAAGAGAGTAATGTATGC 57.400 34.615 5.18 7.62 40.74 3.14
2835 5170 8.087750 CCCTCACTAGAATAGCTTCATTAAGAG 58.912 40.741 0.00 0.00 44.39 2.85
2915 5250 6.220726 ACAACTTCAACCAAAACATTAGCT 57.779 33.333 0.00 0.00 0.00 3.32
2945 5280 7.918076 ACTGTATCAAGGTAAAAGATCTTCCA 58.082 34.615 8.78 0.00 0.00 3.53
2965 5300 6.685527 TGCAGAAACAACACAAATACTGTA 57.314 33.333 0.00 0.00 36.10 2.74
2966 5301 5.574891 TGCAGAAACAACACAAATACTGT 57.425 34.783 0.00 0.00 39.56 3.55
2967 5302 7.584108 TCTATGCAGAAACAACACAAATACTG 58.416 34.615 0.00 0.00 0.00 2.74
2968 5303 7.744087 TCTATGCAGAAACAACACAAATACT 57.256 32.000 0.00 0.00 0.00 2.12
2969 5304 7.061094 GCTTCTATGCAGAAACAACACAAATAC 59.939 37.037 0.00 0.00 40.28 1.89
2984 5319 2.886081 AGTGTCTTCGCTTCTATGCAG 58.114 47.619 0.00 0.00 0.00 4.41
3040 5375 4.141711 CCTACATGTATGCCTGTTGGTAGT 60.142 45.833 5.91 0.00 33.85 2.73
3041 5376 4.380531 CCTACATGTATGCCTGTTGGTAG 58.619 47.826 5.91 0.00 33.85 3.18
3043 5378 2.683742 GCCTACATGTATGCCTGTTGGT 60.684 50.000 19.14 0.00 37.99 3.67
3044 5379 1.949525 GCCTACATGTATGCCTGTTGG 59.050 52.381 19.14 13.19 38.43 3.77
3045 5380 2.642427 TGCCTACATGTATGCCTGTTG 58.358 47.619 24.64 4.46 0.00 3.33
3046 5381 3.582998 ATGCCTACATGTATGCCTGTT 57.417 42.857 24.64 9.07 34.35 3.16
3047 5382 4.916041 ATATGCCTACATGTATGCCTGT 57.084 40.909 24.64 13.98 37.04 4.00
3048 5383 6.881065 ACTAAATATGCCTACATGTATGCCTG 59.119 38.462 24.64 9.72 37.04 4.85
3049 5384 7.020827 ACTAAATATGCCTACATGTATGCCT 57.979 36.000 24.64 19.07 37.04 4.75
3050 5385 7.687941 AACTAAATATGCCTACATGTATGCC 57.312 36.000 24.64 11.43 37.04 4.40
3067 5402 9.569122 TGTTGCCTCTTAAAGACTTAACTAAAT 57.431 29.630 0.00 0.00 0.00 1.40
3068 5403 8.967664 TGTTGCCTCTTAAAGACTTAACTAAA 57.032 30.769 0.00 0.00 0.00 1.85
3071 5406 9.569122 TTTATGTTGCCTCTTAAAGACTTAACT 57.431 29.630 0.00 0.00 0.00 2.24
3076 5411 9.696917 CAATTTTTATGTTGCCTCTTAAAGACT 57.303 29.630 0.00 0.00 0.00 3.24
3077 5412 8.435430 GCAATTTTTATGTTGCCTCTTAAAGAC 58.565 33.333 0.00 0.00 43.65 3.01
3078 5413 8.532977 GCAATTTTTATGTTGCCTCTTAAAGA 57.467 30.769 0.00 0.00 43.65 2.52
3092 5427 9.023967 GGCTGTAGTATCTTTGCAATTTTTATG 57.976 33.333 0.00 0.00 0.00 1.90
3094 5429 8.348285 AGGCTGTAGTATCTTTGCAATTTTTA 57.652 30.769 0.00 0.00 0.00 1.52
3103 5439 4.442192 GGTCAGGAGGCTGTAGTATCTTTG 60.442 50.000 0.00 0.00 0.00 2.77
3106 5442 2.245028 TGGTCAGGAGGCTGTAGTATCT 59.755 50.000 0.00 0.00 0.00 1.98
3107 5443 2.625790 CTGGTCAGGAGGCTGTAGTATC 59.374 54.545 0.00 0.00 0.00 2.24
3108 5444 2.245028 TCTGGTCAGGAGGCTGTAGTAT 59.755 50.000 0.00 0.00 0.00 2.12
3119 5455 1.351076 TGCTTGTGATCTGGTCAGGA 58.649 50.000 0.00 0.00 37.56 3.86
3149 5485 8.503428 AGGGAAATATCAACTCAGTAGATGAT 57.497 34.615 4.01 4.01 44.68 2.45
3157 5493 7.772292 TCTGATCAAAGGGAAATATCAACTCAG 59.228 37.037 0.00 0.00 0.00 3.35
3176 5512 6.950842 ACCAGTTACATCTGAATTCTGATCA 58.049 36.000 21.18 11.76 37.61 2.92
3181 5517 7.067494 GGCATAAACCAGTTACATCTGAATTCT 59.933 37.037 7.05 0.00 37.61 2.40
3211 5547 1.737363 GCTCAGTACAGTAGGCAGTGC 60.737 57.143 6.55 6.55 0.00 4.40
3229 5565 4.396166 GCAATATTGTACTGAACCACTGCT 59.604 41.667 16.61 0.00 0.00 4.24
3230 5566 4.396166 AGCAATATTGTACTGAACCACTGC 59.604 41.667 16.61 0.00 0.00 4.40
3274 5610 4.004982 TGTCCCTTCAGCGGTTAATTAAC 58.995 43.478 18.30 18.30 35.50 2.01
3275 5611 4.289238 TGTCCCTTCAGCGGTTAATTAA 57.711 40.909 0.00 0.00 0.00 1.40
3276 5612 3.985019 TGTCCCTTCAGCGGTTAATTA 57.015 42.857 0.00 0.00 0.00 1.40
3277 5613 2.871096 TGTCCCTTCAGCGGTTAATT 57.129 45.000 0.00 0.00 0.00 1.40
3278 5614 3.366052 AATGTCCCTTCAGCGGTTAAT 57.634 42.857 0.00 0.00 0.00 1.40
3279 5615 2.871096 AATGTCCCTTCAGCGGTTAA 57.129 45.000 0.00 0.00 0.00 2.01
3280 5616 3.602483 GTTAATGTCCCTTCAGCGGTTA 58.398 45.455 0.00 0.00 0.00 2.85
3281 5617 2.433436 GTTAATGTCCCTTCAGCGGTT 58.567 47.619 0.00 0.00 0.00 4.44
3282 5618 1.674817 CGTTAATGTCCCTTCAGCGGT 60.675 52.381 0.00 0.00 0.00 5.68
3285 5621 4.965119 ATTTCGTTAATGTCCCTTCAGC 57.035 40.909 0.00 0.00 0.00 4.26
3300 5636 0.796312 ACGATGAAGCGCAATTTCGT 59.204 45.000 18.43 18.43 35.56 3.85
3302 5638 4.403453 AGTAAACGATGAAGCGCAATTTC 58.597 39.130 11.47 5.41 33.86 2.17
3322 5658 9.686683 ACAAGGTTATGCTTATATTTCAAGAGT 57.313 29.630 0.00 0.00 0.00 3.24
3328 5664 9.722056 CACAGAACAAGGTTATGCTTATATTTC 57.278 33.333 3.85 0.00 0.00 2.17
3329 5665 9.243105 ACACAGAACAAGGTTATGCTTATATTT 57.757 29.630 3.85 0.00 0.00 1.40
3346 5683 5.830457 TCCCACATTCAAATAACACAGAACA 59.170 36.000 0.00 0.00 0.00 3.18
3350 5687 6.511416 TGTTTCCCACATTCAAATAACACAG 58.489 36.000 0.00 0.00 0.00 3.66
3351 5688 6.097554 ACTGTTTCCCACATTCAAATAACACA 59.902 34.615 0.00 0.00 33.76 3.72
3370 5707 9.174166 GACAGGGACATGTTTAATATACTGTTT 57.826 33.333 0.00 0.00 35.80 2.83
3373 5710 8.964476 AAGACAGGGACATGTTTAATATACTG 57.036 34.615 0.00 3.07 32.25 2.74
3374 5711 9.975218 AAAAGACAGGGACATGTTTAATATACT 57.025 29.630 0.00 0.00 32.25 2.12
3379 5716 7.287696 ACAAGAAAAGACAGGGACATGTTTAAT 59.712 33.333 0.00 0.00 32.25 1.40
3380 5717 6.605594 ACAAGAAAAGACAGGGACATGTTTAA 59.394 34.615 0.00 0.00 32.25 1.52
3381 5718 6.126409 ACAAGAAAAGACAGGGACATGTTTA 58.874 36.000 0.00 0.00 32.25 2.01
3462 5799 1.078918 CTGCTCCATGAACTCCGCA 60.079 57.895 0.00 0.00 0.00 5.69
3486 5823 0.674581 CTGCCGAGTTGCCTGATTCA 60.675 55.000 0.00 0.00 0.00 2.57
3520 5857 4.099170 CCTCCGCGTCTCGTTCGT 62.099 66.667 4.92 0.00 36.19 3.85
3664 6001 1.792949 AGTAGCAACGTCTTTGAAGCG 59.207 47.619 0.00 6.19 37.39 4.68
3700 6037 2.018515 TCAAGTTTTTGACCCGACACC 58.981 47.619 0.00 0.00 38.37 4.16
3761 6098 8.566260 CAATATTTCACCTCCTCTTCATCAATC 58.434 37.037 0.00 0.00 0.00 2.67
3766 6103 6.125029 CACCAATATTTCACCTCCTCTTCAT 58.875 40.000 0.00 0.00 0.00 2.57
3772 6109 4.386761 CCATCCACCAATATTTCACCTCCT 60.387 45.833 0.00 0.00 0.00 3.69
3791 6128 6.774354 TTCTACAAAACTAACGACACCATC 57.226 37.500 0.00 0.00 0.00 3.51
3865 6202 0.321475 CGCACAATGCCCCCATTTTT 60.321 50.000 0.00 0.00 41.12 1.94
4014 6351 1.440850 CACAACATGCGCCGTTGAG 60.441 57.895 33.55 25.86 45.30 3.02
4015 6352 1.719725 AACACAACATGCGCCGTTGA 61.720 50.000 33.55 6.81 45.30 3.18
4051 6388 1.040646 TCGCTGACAGAGGTTCAGTT 58.959 50.000 6.65 0.00 34.27 3.16
4075 6412 2.035530 TTACACGTTTGGTTCCCGTT 57.964 45.000 0.00 0.00 31.46 4.44
4077 6414 1.002576 GGTTTACACGTTTGGTTCCCG 60.003 52.381 0.00 0.00 0.00 5.14
4093 6430 3.076785 TCCCTGTATCAATTGGGTGGTTT 59.923 43.478 5.42 0.00 40.48 3.27
4094 6431 2.652348 TCCCTGTATCAATTGGGTGGTT 59.348 45.455 5.42 0.00 40.48 3.67
4095 6432 2.242196 CTCCCTGTATCAATTGGGTGGT 59.758 50.000 5.42 0.00 40.48 4.16
4096 6433 2.423373 CCTCCCTGTATCAATTGGGTGG 60.423 54.545 5.42 4.39 43.95 4.61
4097 6434 2.423373 CCCTCCCTGTATCAATTGGGTG 60.423 54.545 5.42 0.00 40.48 4.61
4099 6436 1.479389 GCCCTCCCTGTATCAATTGGG 60.479 57.143 5.42 0.00 40.95 4.12
4100 6437 1.496429 AGCCCTCCCTGTATCAATTGG 59.504 52.381 5.42 0.00 0.00 3.16
4101 6438 2.579873 CAGCCCTCCCTGTATCAATTG 58.420 52.381 0.00 0.00 0.00 2.32
4102 6439 1.133668 GCAGCCCTCCCTGTATCAATT 60.134 52.381 0.00 0.00 35.28 2.32
4103 6440 0.475906 GCAGCCCTCCCTGTATCAAT 59.524 55.000 0.00 0.00 35.28 2.57
4106 6443 0.250640 CATGCAGCCCTCCCTGTATC 60.251 60.000 0.00 0.00 36.25 2.24
4107 6444 1.713005 CCATGCAGCCCTCCCTGTAT 61.713 60.000 0.00 0.00 38.46 2.29
4109 6446 3.736224 CCATGCAGCCCTCCCTGT 61.736 66.667 0.00 0.00 35.28 4.00
4145 6629 3.312697 ACTGAGCTCAAGAAAACCGTTTC 59.687 43.478 18.85 0.00 43.05 2.78
4146 6630 3.065371 CACTGAGCTCAAGAAAACCGTTT 59.935 43.478 18.85 0.00 0.00 3.60
4147 6631 2.614057 CACTGAGCTCAAGAAAACCGTT 59.386 45.455 18.85 0.00 0.00 4.44
4149 6633 2.221981 GTCACTGAGCTCAAGAAAACCG 59.778 50.000 18.85 5.82 0.00 4.44
4150 6634 3.206150 TGTCACTGAGCTCAAGAAAACC 58.794 45.455 18.85 7.41 0.00 3.27
4151 6635 4.781071 CATGTCACTGAGCTCAAGAAAAC 58.219 43.478 18.85 11.78 0.00 2.43
4152 6636 3.251729 GCATGTCACTGAGCTCAAGAAAA 59.748 43.478 18.85 10.62 0.00 2.29
4153 6637 2.810274 GCATGTCACTGAGCTCAAGAAA 59.190 45.455 18.85 13.91 0.00 2.52
4154 6638 2.420642 GCATGTCACTGAGCTCAAGAA 58.579 47.619 18.85 9.73 0.00 2.52
4155 6639 1.338484 GGCATGTCACTGAGCTCAAGA 60.338 52.381 18.85 15.53 0.00 3.02
4156 6640 1.085091 GGCATGTCACTGAGCTCAAG 58.915 55.000 18.85 13.36 0.00 3.02
4157 6641 0.689055 AGGCATGTCACTGAGCTCAA 59.311 50.000 18.85 2.16 0.00 3.02
4158 6642 0.248565 GAGGCATGTCACTGAGCTCA 59.751 55.000 17.19 17.19 0.00 4.26
4159 6643 0.805322 CGAGGCATGTCACTGAGCTC 60.805 60.000 6.82 6.82 0.00 4.09
4160 6644 1.217511 CGAGGCATGTCACTGAGCT 59.782 57.895 0.00 0.00 0.00 4.09
4161 6645 2.459442 GCGAGGCATGTCACTGAGC 61.459 63.158 0.00 0.00 0.00 4.26
4162 6646 0.390866 AAGCGAGGCATGTCACTGAG 60.391 55.000 0.00 0.00 0.00 3.35
4166 6650 3.764885 AATAAAAGCGAGGCATGTCAC 57.235 42.857 0.00 0.00 0.00 3.67
4168 6655 4.558860 GTGAAAATAAAAGCGAGGCATGTC 59.441 41.667 0.00 0.00 0.00 3.06
4169 6656 4.485163 GTGAAAATAAAAGCGAGGCATGT 58.515 39.130 0.00 0.00 0.00 3.21
4173 6660 3.569250 TGGTGAAAATAAAAGCGAGGC 57.431 42.857 0.00 0.00 0.00 4.70
4174 6661 3.911964 CGTTGGTGAAAATAAAAGCGAGG 59.088 43.478 0.00 0.00 0.00 4.63
4178 6665 4.443063 GGTGACGTTGGTGAAAATAAAAGC 59.557 41.667 0.00 0.00 0.00 3.51
4202 6690 4.794439 CTCGCCGCCGTCACATGA 62.794 66.667 0.00 0.00 35.54 3.07
4330 7565 2.746279 TCCTTGTGGTGTTCACCATT 57.254 45.000 24.46 0.00 45.48 3.16
4370 7605 0.386113 GATAGGCAGAGGTCGTGGTC 59.614 60.000 0.00 0.00 0.00 4.02
4412 7647 0.183971 TCTTTTCAGGCGGTTCCCAA 59.816 50.000 0.00 0.00 34.51 4.12
4414 7649 1.545841 AATCTTTTCAGGCGGTTCCC 58.454 50.000 0.00 0.00 34.51 3.97
4425 7660 3.129462 GCCAGGCCTCACTAAATCTTTTC 59.871 47.826 0.00 0.00 0.00 2.29
4426 7661 3.092301 GCCAGGCCTCACTAAATCTTTT 58.908 45.455 0.00 0.00 0.00 2.27
4427 7662 2.728007 GCCAGGCCTCACTAAATCTTT 58.272 47.619 0.00 0.00 0.00 2.52
4428 7663 1.407437 CGCCAGGCCTCACTAAATCTT 60.407 52.381 0.00 0.00 0.00 2.40
4429 7664 0.179000 CGCCAGGCCTCACTAAATCT 59.821 55.000 0.00 0.00 0.00 2.40
4430 7665 0.815615 CCGCCAGGCCTCACTAAATC 60.816 60.000 0.00 0.00 0.00 2.17
4431 7666 1.224592 CCGCCAGGCCTCACTAAAT 59.775 57.895 0.00 0.00 0.00 1.40
4432 7667 1.485294 TTCCGCCAGGCCTCACTAAA 61.485 55.000 0.00 0.00 37.47 1.85
4433 7668 1.916273 TTCCGCCAGGCCTCACTAA 60.916 57.895 0.00 0.00 37.47 2.24
4434 7669 2.284331 TTCCGCCAGGCCTCACTA 60.284 61.111 0.00 0.00 37.47 2.74
4435 7670 4.021925 GTTCCGCCAGGCCTCACT 62.022 66.667 0.00 0.00 37.47 3.41
4452 7687 2.821969 CTGGATTTGAGAACCCACTTGG 59.178 50.000 0.00 0.00 41.37 3.61
4453 7688 3.754965 TCTGGATTTGAGAACCCACTTG 58.245 45.455 0.00 0.00 0.00 3.16
4454 7689 4.453480 TTCTGGATTTGAGAACCCACTT 57.547 40.909 0.00 0.00 0.00 3.16
4455 7690 4.401925 CTTTCTGGATTTGAGAACCCACT 58.598 43.478 0.00 0.00 0.00 4.00
4456 7691 3.507622 CCTTTCTGGATTTGAGAACCCAC 59.492 47.826 0.00 0.00 38.35 4.61
4457 7692 3.140144 ACCTTTCTGGATTTGAGAACCCA 59.860 43.478 0.00 0.00 39.71 4.51
4458 7693 3.767711 ACCTTTCTGGATTTGAGAACCC 58.232 45.455 0.00 0.00 39.71 4.11
4459 7694 5.412904 CACTACCTTTCTGGATTTGAGAACC 59.587 44.000 0.00 0.00 39.71 3.62
4460 7695 5.998363 ACACTACCTTTCTGGATTTGAGAAC 59.002 40.000 0.00 0.00 39.71 3.01
4461 7696 6.187727 ACACTACCTTTCTGGATTTGAGAA 57.812 37.500 0.00 0.00 39.71 2.87
4462 7697 5.825593 ACACTACCTTTCTGGATTTGAGA 57.174 39.130 0.00 0.00 39.71 3.27
4463 7698 5.182001 CCAACACTACCTTTCTGGATTTGAG 59.818 44.000 0.00 0.00 39.71 3.02
4464 7699 5.070001 CCAACACTACCTTTCTGGATTTGA 58.930 41.667 0.00 0.00 39.71 2.69
4465 7700 5.070001 TCCAACACTACCTTTCTGGATTTG 58.930 41.667 0.00 0.00 39.71 2.32
4466 7701 5.319043 TCCAACACTACCTTTCTGGATTT 57.681 39.130 0.00 0.00 39.71 2.17
4467 7702 4.993705 TCCAACACTACCTTTCTGGATT 57.006 40.909 0.00 0.00 39.71 3.01
4468 7703 4.993705 TTCCAACACTACCTTTCTGGAT 57.006 40.909 0.00 0.00 39.71 3.41
4469 7704 4.349636 TGATTCCAACACTACCTTTCTGGA 59.650 41.667 0.00 0.00 39.71 3.86
4470 7705 4.651778 TGATTCCAACACTACCTTTCTGG 58.348 43.478 0.00 0.00 42.93 3.86
4471 7706 5.182001 CCTTGATTCCAACACTACCTTTCTG 59.818 44.000 0.00 0.00 0.00 3.02
4472 7707 5.163088 ACCTTGATTCCAACACTACCTTTCT 60.163 40.000 0.00 0.00 0.00 2.52
4473 7708 5.070685 ACCTTGATTCCAACACTACCTTTC 58.929 41.667 0.00 0.00 0.00 2.62
4474 7709 5.061721 ACCTTGATTCCAACACTACCTTT 57.938 39.130 0.00 0.00 0.00 3.11
4475 7710 4.724279 ACCTTGATTCCAACACTACCTT 57.276 40.909 0.00 0.00 0.00 3.50
4476 7711 4.724279 AACCTTGATTCCAACACTACCT 57.276 40.909 0.00 0.00 0.00 3.08
4477 7712 6.657541 TCATTAACCTTGATTCCAACACTACC 59.342 38.462 0.00 0.00 0.00 3.18
4478 7713 7.681939 TCATTAACCTTGATTCCAACACTAC 57.318 36.000 0.00 0.00 0.00 2.73
4479 7714 8.106462 TCATCATTAACCTTGATTCCAACACTA 58.894 33.333 0.00 0.00 31.50 2.74
4480 7715 6.947733 TCATCATTAACCTTGATTCCAACACT 59.052 34.615 0.00 0.00 31.50 3.55
4481 7716 7.156876 TCATCATTAACCTTGATTCCAACAC 57.843 36.000 0.00 0.00 31.50 3.32
4482 7717 7.959658 ATCATCATTAACCTTGATTCCAACA 57.040 32.000 0.00 0.00 31.50 3.33
4485 7720 9.081204 CCAATATCATCATTAACCTTGATTCCA 57.919 33.333 2.33 0.00 31.50 3.53
4486 7721 9.082313 ACCAATATCATCATTAACCTTGATTCC 57.918 33.333 2.33 0.00 31.50 3.01
4488 7723 9.645128 TGACCAATATCATCATTAACCTTGATT 57.355 29.630 2.33 0.00 31.50 2.57
4489 7724 9.818270 ATGACCAATATCATCATTAACCTTGAT 57.182 29.630 0.00 0.00 33.99 2.57
4490 7725 9.645128 AATGACCAATATCATCATTAACCTTGA 57.355 29.630 7.08 0.00 40.44 3.02
4503 7738 9.460019 TGTGTCTGAAAATAATGACCAATATCA 57.540 29.630 0.00 0.00 0.00 2.15
4504 7739 9.722056 GTGTGTCTGAAAATAATGACCAATATC 57.278 33.333 0.00 0.00 0.00 1.63
4505 7740 9.241919 TGTGTGTCTGAAAATAATGACCAATAT 57.758 29.630 0.00 0.00 0.00 1.28
4506 7741 8.628630 TGTGTGTCTGAAAATAATGACCAATA 57.371 30.769 0.00 0.00 0.00 1.90
4507 7742 7.523293 TGTGTGTCTGAAAATAATGACCAAT 57.477 32.000 0.00 0.00 0.00 3.16
4508 7743 6.951062 TGTGTGTCTGAAAATAATGACCAA 57.049 33.333 0.00 0.00 0.00 3.67
4509 7744 6.016360 CCTTGTGTGTCTGAAAATAATGACCA 60.016 38.462 0.00 0.00 0.00 4.02
4510 7745 6.381801 CCTTGTGTGTCTGAAAATAATGACC 58.618 40.000 0.00 0.00 0.00 4.02
4511 7746 6.016276 ACCCTTGTGTGTCTGAAAATAATGAC 60.016 38.462 0.00 0.00 0.00 3.06
4512 7747 6.068010 ACCCTTGTGTGTCTGAAAATAATGA 58.932 36.000 0.00 0.00 0.00 2.57
4513 7748 6.331369 ACCCTTGTGTGTCTGAAAATAATG 57.669 37.500 0.00 0.00 0.00 1.90
4514 7749 6.976934 AACCCTTGTGTGTCTGAAAATAAT 57.023 33.333 0.00 0.00 0.00 1.28
4515 7750 6.378564 TCAAACCCTTGTGTGTCTGAAAATAA 59.621 34.615 0.00 0.00 33.94 1.40
4516 7751 5.888724 TCAAACCCTTGTGTGTCTGAAAATA 59.111 36.000 0.00 0.00 33.94 1.40
4517 7752 4.709397 TCAAACCCTTGTGTGTCTGAAAAT 59.291 37.500 0.00 0.00 33.94 1.82
4518 7753 4.082845 TCAAACCCTTGTGTGTCTGAAAA 58.917 39.130 0.00 0.00 33.94 2.29
4519 7754 3.691575 TCAAACCCTTGTGTGTCTGAAA 58.308 40.909 0.00 0.00 33.94 2.69
4520 7755 3.054728 TCTCAAACCCTTGTGTGTCTGAA 60.055 43.478 0.00 0.00 33.94 3.02
4521 7756 2.503765 TCTCAAACCCTTGTGTGTCTGA 59.496 45.455 0.00 0.00 33.94 3.27
4522 7757 2.614057 GTCTCAAACCCTTGTGTGTCTG 59.386 50.000 0.00 0.00 33.94 3.51
4523 7758 2.238646 TGTCTCAAACCCTTGTGTGTCT 59.761 45.455 0.00 0.00 33.94 3.41
4524 7759 2.639065 TGTCTCAAACCCTTGTGTGTC 58.361 47.619 0.00 0.00 33.94 3.67
4525 7760 2.799126 TGTCTCAAACCCTTGTGTGT 57.201 45.000 0.00 0.00 33.94 3.72
4526 7761 2.358898 CCTTGTCTCAAACCCTTGTGTG 59.641 50.000 0.00 0.00 33.94 3.82
4527 7762 2.241176 TCCTTGTCTCAAACCCTTGTGT 59.759 45.455 0.00 0.00 33.94 3.72
4528 7763 2.880890 CTCCTTGTCTCAAACCCTTGTG 59.119 50.000 0.00 0.00 33.94 3.33
4529 7764 2.777692 TCTCCTTGTCTCAAACCCTTGT 59.222 45.455 0.00 0.00 33.94 3.16
4530 7765 3.492102 TCTCCTTGTCTCAAACCCTTG 57.508 47.619 0.00 0.00 0.00 3.61
4531 7766 4.507512 GGAATCTCCTTGTCTCAAACCCTT 60.508 45.833 0.00 0.00 32.53 3.95
4532 7767 3.009584 GGAATCTCCTTGTCTCAAACCCT 59.990 47.826 0.00 0.00 32.53 4.34
4533 7768 3.244911 TGGAATCTCCTTGTCTCAAACCC 60.245 47.826 0.00 0.00 37.46 4.11
4534 7769 4.021102 TGGAATCTCCTTGTCTCAAACC 57.979 45.455 0.00 0.00 37.46 3.27
4535 7770 5.557891 CATGGAATCTCCTTGTCTCAAAC 57.442 43.478 1.37 0.00 37.05 2.93
4547 7782 4.405358 ACAAGAGAGGAGACATGGAATCTC 59.595 45.833 0.00 0.02 41.68 2.75
4548 7783 4.360889 ACAAGAGAGGAGACATGGAATCT 58.639 43.478 0.00 0.00 0.00 2.40
4549 7784 4.751767 ACAAGAGAGGAGACATGGAATC 57.248 45.455 0.00 0.00 0.00 2.52
4550 7785 5.511386 AAACAAGAGAGGAGACATGGAAT 57.489 39.130 0.00 0.00 0.00 3.01
4551 7786 4.982241 AAACAAGAGAGGAGACATGGAA 57.018 40.909 0.00 0.00 0.00 3.53
4552 7787 5.544176 AGTTAAACAAGAGAGGAGACATGGA 59.456 40.000 0.00 0.00 0.00 3.41
4553 7788 5.799213 AGTTAAACAAGAGAGGAGACATGG 58.201 41.667 0.00 0.00 0.00 3.66
4554 7789 7.607250 ACTAGTTAAACAAGAGAGGAGACATG 58.393 38.462 0.00 0.00 0.00 3.21
4555 7790 7.784470 ACTAGTTAAACAAGAGAGGAGACAT 57.216 36.000 0.00 0.00 0.00 3.06
4556 7791 8.701908 TTACTAGTTAAACAAGAGAGGAGACA 57.298 34.615 0.00 0.00 0.00 3.41
4557 7792 9.012161 TCTTACTAGTTAAACAAGAGAGGAGAC 57.988 37.037 0.00 0.00 0.00 3.36
4558 7793 9.756571 ATCTTACTAGTTAAACAAGAGAGGAGA 57.243 33.333 0.00 0.00 0.00 3.71
4559 7794 9.796120 CATCTTACTAGTTAAACAAGAGAGGAG 57.204 37.037 0.00 0.00 0.00 3.69
4560 7795 8.251721 GCATCTTACTAGTTAAACAAGAGAGGA 58.748 37.037 0.00 0.00 0.00 3.71
4561 7796 7.492994 GGCATCTTACTAGTTAAACAAGAGAGG 59.507 40.741 0.00 0.00 0.00 3.69
4562 7797 7.492994 GGGCATCTTACTAGTTAAACAAGAGAG 59.507 40.741 0.00 2.44 0.00 3.20
4563 7798 7.328737 GGGCATCTTACTAGTTAAACAAGAGA 58.671 38.462 0.00 0.00 0.00 3.10
4564 7799 6.255887 CGGGCATCTTACTAGTTAAACAAGAG 59.744 42.308 0.00 0.00 0.00 2.85
4565 7800 6.103997 CGGGCATCTTACTAGTTAAACAAGA 58.896 40.000 0.00 3.93 0.00 3.02
4566 7801 5.873164 ACGGGCATCTTACTAGTTAAACAAG 59.127 40.000 0.00 0.00 0.00 3.16
4567 7802 5.640357 CACGGGCATCTTACTAGTTAAACAA 59.360 40.000 0.00 0.00 0.00 2.83
4568 7803 5.172934 CACGGGCATCTTACTAGTTAAACA 58.827 41.667 0.00 0.00 0.00 2.83
4569 7804 4.033702 GCACGGGCATCTTACTAGTTAAAC 59.966 45.833 3.77 0.00 40.72 2.01
4570 7805 4.081309 AGCACGGGCATCTTACTAGTTAAA 60.081 41.667 14.57 0.00 44.61 1.52
4571 7806 3.449737 AGCACGGGCATCTTACTAGTTAA 59.550 43.478 14.57 0.00 44.61 2.01
4572 7807 3.028850 AGCACGGGCATCTTACTAGTTA 58.971 45.455 14.57 0.00 44.61 2.24
4573 7808 1.831736 AGCACGGGCATCTTACTAGTT 59.168 47.619 14.57 0.00 44.61 2.24
4574 7809 1.486211 AGCACGGGCATCTTACTAGT 58.514 50.000 14.57 0.00 44.61 2.57
4575 7810 3.579709 CATAGCACGGGCATCTTACTAG 58.420 50.000 14.57 0.00 44.61 2.57
4576 7811 2.288825 GCATAGCACGGGCATCTTACTA 60.289 50.000 14.57 0.00 44.61 1.82
4577 7812 1.541233 GCATAGCACGGGCATCTTACT 60.541 52.381 14.57 0.00 44.61 2.24
4578 7813 0.868406 GCATAGCACGGGCATCTTAC 59.132 55.000 14.57 0.00 44.61 2.34
4579 7814 0.758734 AGCATAGCACGGGCATCTTA 59.241 50.000 14.57 0.00 44.61 2.10
4580 7815 0.758734 TAGCATAGCACGGGCATCTT 59.241 50.000 14.57 0.00 44.61 2.40
4581 7816 0.034059 GTAGCATAGCACGGGCATCT 59.966 55.000 14.57 5.23 44.61 2.90
4582 7817 1.284982 CGTAGCATAGCACGGGCATC 61.285 60.000 14.57 0.00 44.61 3.91
4583 7818 1.300931 CGTAGCATAGCACGGGCAT 60.301 57.895 14.57 0.00 44.61 4.40
4584 7819 2.106131 CGTAGCATAGCACGGGCA 59.894 61.111 14.57 0.00 44.61 5.36
4585 7820 2.638330 TTCCGTAGCATAGCACGGGC 62.638 60.000 22.77 0.00 45.60 6.13
4586 7821 0.033504 ATTCCGTAGCATAGCACGGG 59.966 55.000 22.77 8.73 45.60 5.28
4587 7822 1.269569 TGATTCCGTAGCATAGCACGG 60.270 52.381 19.56 19.56 46.29 4.94
4588 7823 1.787155 GTGATTCCGTAGCATAGCACG 59.213 52.381 0.00 0.00 34.67 5.34
4589 7824 2.821546 TGTGATTCCGTAGCATAGCAC 58.178 47.619 0.00 0.00 0.00 4.40
4590 7825 3.069443 TCATGTGATTCCGTAGCATAGCA 59.931 43.478 0.00 0.00 0.00 3.49
4591 7826 3.653344 TCATGTGATTCCGTAGCATAGC 58.347 45.455 0.00 0.00 0.00 2.97
4592 7827 6.791887 ATTTCATGTGATTCCGTAGCATAG 57.208 37.500 0.00 0.00 0.00 2.23
4593 7828 8.669946 TTTATTTCATGTGATTCCGTAGCATA 57.330 30.769 0.00 0.00 0.00 3.14
4594 7829 7.566760 TTTATTTCATGTGATTCCGTAGCAT 57.433 32.000 0.00 0.00 0.00 3.79
4595 7830 6.993786 TTTATTTCATGTGATTCCGTAGCA 57.006 33.333 0.00 0.00 0.00 3.49
4596 7831 7.379529 CCAATTTATTTCATGTGATTCCGTAGC 59.620 37.037 0.00 0.00 0.00 3.58
4597 7832 8.620416 TCCAATTTATTTCATGTGATTCCGTAG 58.380 33.333 0.00 0.00 0.00 3.51
4598 7833 8.512966 TCCAATTTATTTCATGTGATTCCGTA 57.487 30.769 0.00 0.00 0.00 4.02
4599 7834 7.403312 TCCAATTTATTTCATGTGATTCCGT 57.597 32.000 0.00 0.00 0.00 4.69
4600 7835 8.876275 ATTCCAATTTATTTCATGTGATTCCG 57.124 30.769 0.00 0.00 0.00 4.30
4601 7836 9.820725 TGATTCCAATTTATTTCATGTGATTCC 57.179 29.630 0.00 0.00 0.00 3.01
4605 7840 9.993454 TTTGTGATTCCAATTTATTTCATGTGA 57.007 25.926 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.