Multiple sequence alignment - TraesCS3D01G358200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G358200 chr3D 100.000 5491 0 0 1 5491 471582272 471587762 0.000000e+00 10141.0
1 TraesCS3D01G358200 chr3D 94.595 148 5 3 5347 5491 593684868 593685015 5.530000e-55 226.0
2 TraesCS3D01G358200 chr3A 96.219 3835 119 16 464 4281 614464602 614468427 0.000000e+00 6255.0
3 TraesCS3D01G358200 chr3A 88.525 915 46 14 4279 5158 614468531 614469421 0.000000e+00 1053.0
4 TraesCS3D01G358200 chr3A 86.223 421 41 13 1 418 614464104 614464510 1.820000e-119 440.0
5 TraesCS3D01G358200 chr3B 91.154 2114 115 29 2923 4986 627201693 627203784 0.000000e+00 2802.0
6 TraesCS3D01G358200 chr3B 92.256 1188 64 9 454 1630 627199016 627200186 0.000000e+00 1659.0
7 TraesCS3D01G358200 chr3B 96.300 919 24 7 1757 2670 627200745 627201658 0.000000e+00 1500.0
8 TraesCS3D01G358200 chr3B 95.238 147 5 2 5347 5491 166173944 166174090 1.190000e-56 231.0
9 TraesCS3D01G358200 chr3B 100.000 41 0 0 3089 3129 627201656 627201696 5.900000e-10 76.8
10 TraesCS3D01G358200 chr6D 95.833 144 4 2 5350 5491 153111143 153111286 1.190000e-56 231.0
11 TraesCS3D01G358200 chr6D 93.220 59 4 0 1623 1681 381361875 381361933 2.720000e-13 87.9
12 TraesCS3D01G358200 chr6B 95.833 144 4 2 5350 5491 62380839 62380696 1.190000e-56 231.0
13 TraesCS3D01G358200 chr6A 95.833 144 4 2 5350 5491 499839685 499839542 1.190000e-56 231.0
14 TraesCS3D01G358200 chr6A 95.139 144 5 2 5350 5491 499837395 499837252 5.530000e-55 226.0
15 TraesCS3D01G358200 chr6A 93.103 58 4 0 1623 1680 445890838 445890781 9.800000e-13 86.1
16 TraesCS3D01G358200 chr2B 95.139 144 5 2 5350 5491 384051475 384051332 5.530000e-55 226.0
17 TraesCS3D01G358200 chr2A 94.558 147 6 2 5347 5491 745753638 745753784 5.530000e-55 226.0
18 TraesCS3D01G358200 chrUn 95.105 143 5 2 5350 5491 51101126 51100985 1.990000e-54 224.0
19 TraesCS3D01G358200 chr1D 74.490 490 80 32 3377 3846 377193194 377192730 2.630000e-38 171.0
20 TraesCS3D01G358200 chr7D 96.364 55 2 0 1623 1677 321247741 321247795 2.110000e-14 91.6
21 TraesCS3D01G358200 chr7D 91.935 62 3 2 1623 1684 414277632 414277691 9.800000e-13 86.1
22 TraesCS3D01G358200 chr5B 94.737 57 3 0 1623 1679 638485430 638485374 7.580000e-14 89.8
23 TraesCS3D01G358200 chr7A 94.643 56 3 0 1623 1678 184126772 184126827 2.720000e-13 87.9
24 TraesCS3D01G358200 chr4D 93.333 60 1 3 1622 1680 108302721 108302778 9.800000e-13 86.1
25 TraesCS3D01G358200 chr5D 90.625 64 4 2 1623 1685 565043136 565043198 3.520000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G358200 chr3D 471582272 471587762 5490 False 10141.000000 10141 100.000000 1 5491 1 chr3D.!!$F1 5490
1 TraesCS3D01G358200 chr3A 614464104 614469421 5317 False 2582.666667 6255 90.322333 1 5158 3 chr3A.!!$F1 5157
2 TraesCS3D01G358200 chr3B 627199016 627203784 4768 False 1509.450000 2802 94.927500 454 4986 4 chr3B.!!$F2 4532
3 TraesCS3D01G358200 chr6A 499837252 499839685 2433 True 228.500000 231 95.486000 5350 5491 2 chr6A.!!$R2 141

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 159 0.966179 TTGGAGAGCGTAGTGAGCAA 59.034 50.000 0.00 0.0 37.01 3.91 F
1239 1322 0.041926 CCCGTCGGTTCGTTTTGTTC 60.042 55.000 11.06 0.0 0.00 3.18 F
1449 1533 0.409484 AGTGTTGGATTTGGGAGGGG 59.591 55.000 0.00 0.0 0.00 4.79 F
2027 2602 0.687427 TCATGGGCGACAGGATCTCA 60.687 55.000 0.00 0.0 34.49 3.27 F
2670 3248 2.939756 TCTTAGCAAGCAACGAACACAA 59.060 40.909 0.00 0.0 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1663 1747 0.179045 ATGCAACATACTCCCTCCGC 60.179 55.000 0.0 0.0 0.00 5.54 R
2742 3323 0.813184 CAGCAATCGACCAAGCCATT 59.187 50.000 0.0 0.0 0.00 3.16 R
2779 3360 4.148174 GCAAACGCAATAAGTGAAAGTTCC 59.852 41.667 0.0 0.0 0.00 3.62 R
3890 4471 1.464997 GATCTGTCAAACGGAAGGCAC 59.535 52.381 0.0 0.0 37.01 5.01 R
4628 5349 0.803117 GGCTCCGTTCTTTTACAGCC 59.197 55.000 0.0 0.0 39.75 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 8.980596 TGCCAAGAGAAATTAACATGGATAAAT 58.019 29.630 0.00 0.00 0.00 1.40
116 117 7.543756 ACATGGATAAATAGAAAAACAACCGG 58.456 34.615 0.00 0.00 0.00 5.28
117 118 7.394923 ACATGGATAAATAGAAAAACAACCGGA 59.605 33.333 9.46 0.00 0.00 5.14
118 119 7.762588 TGGATAAATAGAAAAACAACCGGAA 57.237 32.000 9.46 0.00 0.00 4.30
120 121 8.463607 TGGATAAATAGAAAAACAACCGGAATC 58.536 33.333 9.46 0.00 0.00 2.52
121 122 7.642586 GGATAAATAGAAAAACAACCGGAATCG 59.357 37.037 9.46 0.00 0.00 3.34
122 123 6.563222 AAATAGAAAAACAACCGGAATCGA 57.437 33.333 9.46 0.00 39.00 3.59
123 124 3.891056 AGAAAAACAACCGGAATCGAC 57.109 42.857 9.46 0.00 39.00 4.20
124 125 3.473625 AGAAAAACAACCGGAATCGACT 58.526 40.909 9.46 0.00 39.00 4.18
125 126 3.250040 AGAAAAACAACCGGAATCGACTG 59.750 43.478 9.46 0.00 39.00 3.51
126 127 2.249844 AAACAACCGGAATCGACTGT 57.750 45.000 9.46 0.00 39.00 3.55
127 128 2.249844 AACAACCGGAATCGACTGTT 57.750 45.000 9.46 2.92 39.00 3.16
128 129 1.792006 ACAACCGGAATCGACTGTTC 58.208 50.000 9.46 0.00 39.00 3.18
129 130 1.343465 ACAACCGGAATCGACTGTTCT 59.657 47.619 9.46 0.00 39.00 3.01
130 131 1.993370 CAACCGGAATCGACTGTTCTC 59.007 52.381 9.46 0.00 39.00 2.87
131 132 1.546961 ACCGGAATCGACTGTTCTCT 58.453 50.000 9.46 0.00 39.00 3.10
140 141 5.695851 ATCGACTGTTCTCTTTTTGCATT 57.304 34.783 0.00 0.00 0.00 3.56
141 142 4.847633 TCGACTGTTCTCTTTTTGCATTG 58.152 39.130 0.00 0.00 0.00 2.82
158 159 0.966179 TTGGAGAGCGTAGTGAGCAA 59.034 50.000 0.00 0.00 37.01 3.91
161 162 2.099263 TGGAGAGCGTAGTGAGCAATAC 59.901 50.000 0.00 0.00 37.01 1.89
181 182 7.365741 CAATACATGCTCTCACTTTCAGTTTT 58.634 34.615 0.00 0.00 0.00 2.43
187 188 7.624360 TGCTCTCACTTTCAGTTTTAGAAAA 57.376 32.000 0.00 0.00 34.84 2.29
217 218 6.698329 TCAGCAACAACTGAAATCATTGAAAG 59.302 34.615 10.48 0.00 43.59 2.62
220 221 7.223387 AGCAACAACTGAAATCATTGAAAGTTC 59.777 33.333 10.48 0.00 0.00 3.01
239 240 6.084326 AGTTCAGTTATTTCGGTTTGCATT 57.916 33.333 0.00 0.00 0.00 3.56
246 247 2.126110 CGGTTTGCATTTCGGCCC 60.126 61.111 0.00 0.00 0.00 5.80
268 269 5.701750 CCCAAATGCTGAAACATTCAATTGA 59.298 36.000 3.38 3.38 39.32 2.57
270 271 7.073265 CCAAATGCTGAAACATTCAATTGAAC 58.927 34.615 22.71 10.48 39.32 3.18
276 277 6.476380 GCTGAAACATTCAATTGAACTCAACA 59.524 34.615 22.71 17.38 39.58 3.33
280 281 9.476761 GAAACATTCAATTGAACTCAACAAAAC 57.523 29.630 22.71 4.39 38.86 2.43
291 292 6.760770 TGAACTCAACAAAACATTGGAATTCC 59.239 34.615 18.17 18.17 0.00 3.01
294 295 7.337938 ACTCAACAAAACATTGGAATTCCTTT 58.662 30.769 24.73 13.87 36.82 3.11
296 297 7.334090 TCAACAAAACATTGGAATTCCTTTGA 58.666 30.769 29.04 18.23 33.21 2.69
341 344 7.617533 AAATTCACGTGTACTACAAAATTGC 57.382 32.000 16.51 0.00 0.00 3.56
343 346 3.184783 TCACGTGTACTACAAAATTGCCG 59.815 43.478 16.51 0.00 0.00 5.69
345 348 4.150274 CACGTGTACTACAAAATTGCCGTA 59.850 41.667 7.58 0.00 0.00 4.02
347 350 5.409214 ACGTGTACTACAAAATTGCCGTAAT 59.591 36.000 0.00 0.00 0.00 1.89
386 389 8.058847 AGGTAAATATTCCAATGCCTACTGAAA 58.941 33.333 0.00 0.00 0.00 2.69
388 391 9.899226 GTAAATATTCCAATGCCTACTGAAATC 57.101 33.333 0.00 0.00 0.00 2.17
391 394 2.503765 TCCAATGCCTACTGAAATCCGA 59.496 45.455 0.00 0.00 0.00 4.55
397 400 4.380531 TGCCTACTGAAATCCGATGAATC 58.619 43.478 0.00 0.00 0.00 2.52
398 401 3.748568 GCCTACTGAAATCCGATGAATCC 59.251 47.826 0.00 0.00 0.00 3.01
413 416 7.617329 TCCGATGAATCCTATCATAATCTCACT 59.383 37.037 0.00 0.00 40.08 3.41
418 421 9.993454 TGAATCCTATCATAATCTCACTGAAAG 57.007 33.333 0.00 0.00 42.29 2.62
419 422 8.845413 AATCCTATCATAATCTCACTGAAAGC 57.155 34.615 0.00 0.00 37.60 3.51
423 426 6.841443 ATCATAATCTCACTGAAAGCGAAG 57.159 37.500 0.00 0.00 37.60 3.79
424 427 5.965922 TCATAATCTCACTGAAAGCGAAGA 58.034 37.500 0.00 0.00 37.60 2.87
426 429 3.667497 ATCTCACTGAAAGCGAAGACA 57.333 42.857 0.00 0.00 37.60 3.41
427 430 3.452755 TCTCACTGAAAGCGAAGACAA 57.547 42.857 0.00 0.00 37.60 3.18
428 431 3.792401 TCTCACTGAAAGCGAAGACAAA 58.208 40.909 0.00 0.00 37.60 2.83
429 432 3.555956 TCTCACTGAAAGCGAAGACAAAC 59.444 43.478 0.00 0.00 37.60 2.93
430 433 3.531538 TCACTGAAAGCGAAGACAAACT 58.468 40.909 0.00 0.00 37.60 2.66
431 434 4.689071 TCACTGAAAGCGAAGACAAACTA 58.311 39.130 0.00 0.00 37.60 2.24
432 435 4.745125 TCACTGAAAGCGAAGACAAACTAG 59.255 41.667 0.00 0.00 37.60 2.57
433 436 4.508124 CACTGAAAGCGAAGACAAACTAGT 59.492 41.667 0.00 0.00 37.60 2.57
434 437 5.690409 CACTGAAAGCGAAGACAAACTAGTA 59.310 40.000 0.00 0.00 37.60 1.82
435 438 6.366332 CACTGAAAGCGAAGACAAACTAGTAT 59.634 38.462 0.00 0.00 37.60 2.12
436 439 6.929606 ACTGAAAGCGAAGACAAACTAGTATT 59.070 34.615 0.00 0.00 37.60 1.89
437 440 8.086522 ACTGAAAGCGAAGACAAACTAGTATTA 58.913 33.333 0.00 0.00 37.60 0.98
438 441 8.997621 TGAAAGCGAAGACAAACTAGTATTAT 57.002 30.769 0.00 0.00 0.00 1.28
442 445 9.517609 AAGCGAAGACAAACTAGTATTATAGTG 57.482 33.333 0.00 0.00 36.14 2.74
838 916 1.661498 GCCCAAAGCTTAGCTGCTCC 61.661 60.000 7.77 0.00 43.24 4.70
841 919 1.078143 AAAGCTTAGCTGCTCCGGG 60.078 57.895 7.77 0.00 43.24 5.73
926 1004 4.241555 AGATCCCGGCGGTGATGC 62.242 66.667 27.13 19.42 0.00 3.91
1061 1139 3.494254 TTGGCCGTGTGGGGTCTT 61.494 61.111 0.00 0.00 35.78 3.01
1098 1176 6.550108 TGTTTTGGGTATGGTTTGTTAAGCTA 59.450 34.615 0.00 0.00 32.98 3.32
1223 1306 1.384525 TTGTGTTTCAGGTGAACCCG 58.615 50.000 0.00 0.00 38.74 5.28
1226 1309 0.531090 TGTTTCAGGTGAACCCGTCG 60.531 55.000 0.00 0.00 38.74 5.12
1239 1322 0.041926 CCCGTCGGTTCGTTTTGTTC 60.042 55.000 11.06 0.00 0.00 3.18
1242 1325 2.475852 CCGTCGGTTCGTTTTGTTCAAA 60.476 45.455 2.08 0.00 0.00 2.69
1244 1327 3.787105 CGTCGGTTCGTTTTGTTCAAATT 59.213 39.130 0.00 0.00 0.00 1.82
1245 1328 4.962751 CGTCGGTTCGTTTTGTTCAAATTA 59.037 37.500 0.00 0.00 0.00 1.40
1246 1329 5.109039 CGTCGGTTCGTTTTGTTCAAATTAC 60.109 40.000 0.00 0.00 0.00 1.89
1247 1330 5.967088 GTCGGTTCGTTTTGTTCAAATTACT 59.033 36.000 0.00 0.00 0.00 2.24
1261 1344 4.036971 TCAAATTACTTTTCCCCGTGTGTG 59.963 41.667 0.00 0.00 0.00 3.82
1331 1414 0.459585 GCCGCCGAGTCTGAATGTTA 60.460 55.000 0.00 0.00 0.00 2.41
1430 1514 4.750098 GGCTAATAGTTGCTGCTAATTCGA 59.250 41.667 0.00 0.00 0.00 3.71
1449 1533 0.409484 AGTGTTGGATTTGGGAGGGG 59.591 55.000 0.00 0.00 0.00 4.79
1463 1547 4.078516 GGGGTGGTTCGACTCCGG 62.079 72.222 0.00 0.00 36.24 5.14
1480 1564 4.202326 ACTCCGGTGATGAGTTTGTAGTTT 60.202 41.667 11.17 0.00 40.06 2.66
1540 1624 3.119849 CCAAAGGTGTTCTTAATCAGGCG 60.120 47.826 0.00 0.00 34.78 5.52
1600 1684 5.289675 GCTCTGTGATGTGTGTTCTGTATAC 59.710 44.000 0.00 0.00 0.00 1.47
1663 1747 6.183360 ACAAAGTTGAGTCACTTATTTTGGGG 60.183 38.462 12.94 0.00 35.87 4.96
1665 1749 2.432444 TGAGTCACTTATTTTGGGGCG 58.568 47.619 0.00 0.00 0.00 6.13
2014 2589 5.361857 AGAAAAACAGGAATAGCATCATGGG 59.638 40.000 0.00 0.00 35.51 4.00
2027 2602 0.687427 TCATGGGCGACAGGATCTCA 60.687 55.000 0.00 0.00 34.49 3.27
2140 2716 3.131396 TCTGTTTGAGAGAGCGGAAAAC 58.869 45.455 0.00 0.00 0.00 2.43
2441 3019 6.321181 TGTCATTTCTGTGTTTTTAGGAGCTT 59.679 34.615 0.00 0.00 0.00 3.74
2630 3208 5.855740 AGACGTAAAAATGTGGGGAAAAA 57.144 34.783 0.00 0.00 0.00 1.94
2631 3209 5.838529 AGACGTAAAAATGTGGGGAAAAAG 58.161 37.500 0.00 0.00 0.00 2.27
2638 3216 7.953005 AAAAATGTGGGGAAAAAGAAACAAT 57.047 28.000 0.00 0.00 0.00 2.71
2670 3248 2.939756 TCTTAGCAAGCAACGAACACAA 59.060 40.909 0.00 0.00 0.00 3.33
2686 3264 6.420604 ACGAACACAATTTGAAGGCAATTTAG 59.579 34.615 2.79 0.00 33.25 1.85
2742 3323 7.879677 AGATTGATTGTGAAGATTGTGTAGACA 59.120 33.333 0.00 0.00 0.00 3.41
2778 3359 6.458751 CGATTGCTGTCCTATAAATTGTTGCT 60.459 38.462 0.00 0.00 0.00 3.91
2779 3360 5.565592 TGCTGTCCTATAAATTGTTGCTG 57.434 39.130 0.00 0.00 0.00 4.41
2793 3374 6.655078 ATTGTTGCTGGAACTTTCACTTAT 57.345 33.333 13.23 0.00 35.37 1.73
2818 3399 7.504922 TGCGTTTGCTATGTCAAAATTTATC 57.495 32.000 0.00 0.00 43.34 1.75
2821 3402 7.591407 CGTTTGCTATGTCAAAATTTATCACG 58.409 34.615 0.00 0.00 37.65 4.35
2830 3411 8.586570 TGTCAAAATTTATCACGATGCTTTTT 57.413 26.923 0.00 0.00 0.00 1.94
2961 3542 2.967201 CTCCTCTCTGCATCTTCTGGAT 59.033 50.000 0.00 0.00 34.51 3.41
3230 3811 7.326063 GCTTCACAGTTTTTGCGAATTATTACT 59.674 33.333 0.00 0.00 28.20 2.24
3284 3865 3.489355 TCACTGTCGTGAGGTAACCTTA 58.511 45.455 0.00 0.00 44.85 2.69
3741 4322 9.832445 TCTAGTATAATTGGTGGATCTTGTTTC 57.168 33.333 0.00 0.00 0.00 2.78
3906 4487 0.950836 CATGTGCCTTCCGTTTGACA 59.049 50.000 0.00 0.00 0.00 3.58
3983 4564 2.766828 CCTCCCAGGTACCTAAGTCTTG 59.233 54.545 15.80 0.50 0.00 3.02
3991 4572 5.128827 CAGGTACCTAAGTCTTGGCATCTTA 59.871 44.000 15.80 0.00 0.00 2.10
4078 4659 3.782046 CTGGATCGTACAAGTGGGTTAG 58.218 50.000 0.00 0.00 0.00 2.34
4158 4739 5.367945 AGCCCGAGAAGGATAACAAAATA 57.632 39.130 0.00 0.00 45.00 1.40
4240 4825 3.756933 AGGCTTTTGATGTGCACATTT 57.243 38.095 31.82 13.66 36.57 2.32
4255 4840 7.304735 TGTGCACATTTATAGTTCATTCACAC 58.695 34.615 17.42 0.00 0.00 3.82
4271 4857 4.811555 TCACACTTCACTACATTTGCAC 57.188 40.909 0.00 0.00 0.00 4.57
4341 5044 5.120399 TCATGTTGGAACTTCGTTTGTAGT 58.880 37.500 0.00 0.00 0.00 2.73
4348 5051 5.981315 TGGAACTTCGTTTGTAGTTGTAGAG 59.019 40.000 0.00 0.00 36.05 2.43
4352 5055 8.658499 AACTTCGTTTGTAGTTGTAGAGAATT 57.342 30.769 0.00 0.00 34.81 2.17
4415 5134 2.004733 TCTTGATCATTGCAGCGACAG 58.995 47.619 0.00 0.00 0.00 3.51
4442 5161 1.086696 CGATGAACGGAAAGCATGGT 58.913 50.000 0.00 0.00 38.46 3.55
4610 5331 1.004745 CTGTACTGAATGGGGCAAGGT 59.995 52.381 0.00 0.00 0.00 3.50
4628 5349 2.029828 AGGTGCTGAAGTAGTGAACGAG 60.030 50.000 0.00 0.00 0.00 4.18
4657 5378 1.696832 GAACGGAGCCACAATCTCGC 61.697 60.000 0.00 0.00 0.00 5.03
4688 5409 2.120274 CAGGTTGCCCCATGGGTT 59.880 61.111 29.33 4.77 46.51 4.11
4716 5437 4.710423 ATCCGATCATCGATTCTGTAGG 57.290 45.455 9.16 0.00 43.74 3.18
4719 5440 4.341235 TCCGATCATCGATTCTGTAGGTTT 59.659 41.667 9.16 0.00 43.74 3.27
4774 5495 5.928264 ACCTAGCAAAACATTGAAAATCTGC 59.072 36.000 0.00 0.00 0.00 4.26
4777 5498 4.992951 AGCAAAACATTGAAAATCTGCTCC 59.007 37.500 0.00 0.00 33.82 4.70
4988 5738 1.708680 GCTGTAAAGCAAAAACGCTCG 59.291 47.619 0.00 0.00 42.89 5.03
5025 5775 2.748058 AAAGGTGTCGCGGGCATTCT 62.748 55.000 6.13 5.56 0.00 2.40
5038 5788 2.173433 CATTCTGTGCACGATGCCA 58.827 52.632 13.13 0.00 44.23 4.92
5039 5789 0.736636 CATTCTGTGCACGATGCCAT 59.263 50.000 13.13 0.64 44.23 4.40
5040 5790 1.941975 CATTCTGTGCACGATGCCATA 59.058 47.619 13.13 0.00 44.23 2.74
5041 5791 2.330440 TTCTGTGCACGATGCCATAT 57.670 45.000 13.13 0.00 44.23 1.78
5042 5792 3.467374 TTCTGTGCACGATGCCATATA 57.533 42.857 13.13 0.00 44.23 0.86
5043 5793 3.030668 TCTGTGCACGATGCCATATAG 57.969 47.619 13.13 0.00 44.23 1.31
5044 5794 2.365293 TCTGTGCACGATGCCATATAGT 59.635 45.455 13.13 0.00 44.23 2.12
5045 5795 3.572255 TCTGTGCACGATGCCATATAGTA 59.428 43.478 13.13 0.00 44.23 1.82
5046 5796 3.649073 TGTGCACGATGCCATATAGTAC 58.351 45.455 13.13 0.00 44.23 2.73
5047 5797 2.993899 GTGCACGATGCCATATAGTACC 59.006 50.000 0.00 0.00 44.23 3.34
5048 5798 2.630580 TGCACGATGCCATATAGTACCA 59.369 45.455 7.38 0.00 44.23 3.25
5049 5799 2.993899 GCACGATGCCATATAGTACCAC 59.006 50.000 0.00 0.00 37.42 4.16
5050 5800 3.554129 GCACGATGCCATATAGTACCACA 60.554 47.826 0.00 0.00 37.42 4.17
5051 5801 4.237724 CACGATGCCATATAGTACCACAG 58.762 47.826 0.00 0.00 0.00 3.66
5052 5802 3.254060 CGATGCCATATAGTACCACAGC 58.746 50.000 0.00 0.00 0.00 4.40
5089 5839 1.153046 CGGGTGGTGGCCGATATTT 60.153 57.895 0.00 0.00 0.00 1.40
5091 5841 1.733526 GGTGGTGGCCGATATTTGC 59.266 57.895 0.00 0.00 0.00 3.68
5112 5862 4.390297 TGCGTTTTGACCCTTTTTGAAAAG 59.610 37.500 8.83 8.83 43.82 2.27
5116 5866 6.146347 CGTTTTGACCCTTTTTGAAAAGTTCA 59.854 34.615 13.45 12.12 42.92 3.18
5126 5876 6.907206 TTTTGAAAAGTTCAGCCAAATCTG 57.093 33.333 0.00 0.00 41.38 2.90
5129 5879 4.889409 TGAAAAGTTCAGCCAAATCTGACT 59.111 37.500 0.00 0.00 42.27 3.41
5130 5880 5.009010 TGAAAAGTTCAGCCAAATCTGACTC 59.991 40.000 0.00 0.00 42.27 3.36
5149 5899 7.723616 TCTGACTCTGGTTCATAAAAATTCCAA 59.276 33.333 0.00 0.00 0.00 3.53
5150 5900 7.885297 TGACTCTGGTTCATAAAAATTCCAAG 58.115 34.615 0.00 0.00 0.00 3.61
5158 5908 8.743714 GGTTCATAAAAATTCCAAGATCTGACT 58.256 33.333 0.00 0.00 0.00 3.41
5159 5909 9.780413 GTTCATAAAAATTCCAAGATCTGACTC 57.220 33.333 0.00 0.00 0.00 3.36
5160 5910 9.745018 TTCATAAAAATTCCAAGATCTGACTCT 57.255 29.630 0.00 0.00 0.00 3.24
5161 5911 9.170734 TCATAAAAATTCCAAGATCTGACTCTG 57.829 33.333 0.00 0.00 0.00 3.35
5162 5912 6.830873 AAAAATTCCAAGATCTGACTCTGG 57.169 37.500 0.00 0.00 0.00 3.86
5163 5913 5.511386 AAATTCCAAGATCTGACTCTGGT 57.489 39.130 9.67 0.00 0.00 4.00
5164 5914 5.511386 AATTCCAAGATCTGACTCTGGTT 57.489 39.130 9.67 0.00 0.00 3.67
5165 5915 4.543590 TTCCAAGATCTGACTCTGGTTC 57.456 45.455 9.67 0.00 0.00 3.62
5166 5916 3.510459 TCCAAGATCTGACTCTGGTTCA 58.490 45.455 9.67 0.00 0.00 3.18
5167 5917 4.099633 TCCAAGATCTGACTCTGGTTCAT 58.900 43.478 9.67 0.00 0.00 2.57
5168 5918 5.272402 TCCAAGATCTGACTCTGGTTCATA 58.728 41.667 9.67 0.00 0.00 2.15
5169 5919 5.721480 TCCAAGATCTGACTCTGGTTCATAA 59.279 40.000 9.67 0.00 0.00 1.90
5170 5920 6.213397 TCCAAGATCTGACTCTGGTTCATAAA 59.787 38.462 9.67 0.00 0.00 1.40
5171 5921 6.881065 CCAAGATCTGACTCTGGTTCATAAAA 59.119 38.462 0.00 0.00 0.00 1.52
5172 5922 7.391554 CCAAGATCTGACTCTGGTTCATAAAAA 59.608 37.037 0.00 0.00 0.00 1.94
5173 5923 8.954350 CAAGATCTGACTCTGGTTCATAAAAAT 58.046 33.333 0.00 0.00 0.00 1.82
5174 5924 9.525826 AAGATCTGACTCTGGTTCATAAAAATT 57.474 29.630 0.00 0.00 0.00 1.82
5175 5925 9.525826 AGATCTGACTCTGGTTCATAAAAATTT 57.474 29.630 0.00 0.00 0.00 1.82
5176 5926 9.780413 GATCTGACTCTGGTTCATAAAAATTTC 57.220 33.333 0.00 0.00 0.00 2.17
5177 5927 7.806690 TCTGACTCTGGTTCATAAAAATTTCG 58.193 34.615 0.00 0.00 0.00 3.46
5178 5928 7.659799 TCTGACTCTGGTTCATAAAAATTTCGA 59.340 33.333 0.00 0.00 0.00 3.71
5179 5929 7.806690 TGACTCTGGTTCATAAAAATTTCGAG 58.193 34.615 0.00 0.00 0.00 4.04
5180 5930 7.659799 TGACTCTGGTTCATAAAAATTTCGAGA 59.340 33.333 0.00 0.00 0.00 4.04
5181 5931 8.567285 ACTCTGGTTCATAAAAATTTCGAGAT 57.433 30.769 0.00 0.00 0.00 2.75
5182 5932 8.669243 ACTCTGGTTCATAAAAATTTCGAGATC 58.331 33.333 0.00 0.00 0.00 2.75
5183 5933 8.792830 TCTGGTTCATAAAAATTTCGAGATCT 57.207 30.769 0.00 0.00 0.00 2.75
5184 5934 9.884636 TCTGGTTCATAAAAATTTCGAGATCTA 57.115 29.630 0.00 0.00 0.00 1.98
5187 5937 9.422196 GGTTCATAAAAATTTCGAGATCTAACG 57.578 33.333 0.00 0.00 0.00 3.18
5188 5938 8.934947 GTTCATAAAAATTTCGAGATCTAACGC 58.065 33.333 0.00 0.00 0.00 4.84
5189 5939 8.420374 TCATAAAAATTTCGAGATCTAACGCT 57.580 30.769 0.00 0.00 0.00 5.07
5190 5940 8.879759 TCATAAAAATTTCGAGATCTAACGCTT 58.120 29.630 0.00 0.00 0.00 4.68
5191 5941 9.490663 CATAAAAATTTCGAGATCTAACGCTTT 57.509 29.630 0.00 0.00 0.00 3.51
5193 5943 8.797266 AAAAATTTCGAGATCTAACGCTTTTT 57.203 26.923 0.00 6.80 0.00 1.94
5194 5944 8.436156 AAAATTTCGAGATCTAACGCTTTTTC 57.564 30.769 0.00 0.00 0.00 2.29
5195 5945 5.526010 TTTCGAGATCTAACGCTTTTTCC 57.474 39.130 0.00 0.00 0.00 3.13
5196 5946 4.182693 TCGAGATCTAACGCTTTTTCCA 57.817 40.909 0.00 0.00 0.00 3.53
5197 5947 3.924686 TCGAGATCTAACGCTTTTTCCAC 59.075 43.478 0.00 0.00 0.00 4.02
5198 5948 3.927142 CGAGATCTAACGCTTTTTCCACT 59.073 43.478 0.00 0.00 0.00 4.00
5199 5949 4.201628 CGAGATCTAACGCTTTTTCCACTG 60.202 45.833 0.00 0.00 0.00 3.66
5200 5950 4.642429 AGATCTAACGCTTTTTCCACTGT 58.358 39.130 0.00 0.00 0.00 3.55
5201 5951 4.691216 AGATCTAACGCTTTTTCCACTGTC 59.309 41.667 0.00 0.00 0.00 3.51
5202 5952 3.799366 TCTAACGCTTTTTCCACTGTCA 58.201 40.909 0.00 0.00 0.00 3.58
5203 5953 4.385825 TCTAACGCTTTTTCCACTGTCAT 58.614 39.130 0.00 0.00 0.00 3.06
5204 5954 3.626028 AACGCTTTTTCCACTGTCATC 57.374 42.857 0.00 0.00 0.00 2.92
5205 5955 1.531149 ACGCTTTTTCCACTGTCATCG 59.469 47.619 0.00 0.00 0.00 3.84
5206 5956 1.135972 CGCTTTTTCCACTGTCATCGG 60.136 52.381 0.00 0.00 0.00 4.18
5207 5957 1.880027 GCTTTTTCCACTGTCATCGGT 59.120 47.619 0.00 0.00 0.00 4.69
5208 5958 2.095718 GCTTTTTCCACTGTCATCGGTC 60.096 50.000 0.00 0.00 0.00 4.79
5209 5959 3.403038 CTTTTTCCACTGTCATCGGTCT 58.597 45.455 0.00 0.00 0.00 3.85
5210 5960 2.743636 TTTCCACTGTCATCGGTCTC 57.256 50.000 0.00 0.00 0.00 3.36
5211 5961 0.526211 TTCCACTGTCATCGGTCTCG 59.474 55.000 0.00 0.00 37.82 4.04
5212 5962 1.139734 CCACTGTCATCGGTCTCGG 59.860 63.158 0.00 0.00 36.95 4.63
5213 5963 1.517257 CACTGTCATCGGTCTCGGC 60.517 63.158 0.00 0.00 36.95 5.54
5214 5964 2.278206 CTGTCATCGGTCTCGGCG 60.278 66.667 0.00 0.00 36.95 6.46
5215 5965 2.748647 TGTCATCGGTCTCGGCGA 60.749 61.111 10.14 10.14 36.95 5.54
5216 5966 2.064723 CTGTCATCGGTCTCGGCGAT 62.065 60.000 11.27 0.00 36.95 4.58
5217 5967 0.816421 TGTCATCGGTCTCGGCGATA 60.816 55.000 11.27 0.00 36.95 2.92
5218 5968 0.110147 GTCATCGGTCTCGGCGATAG 60.110 60.000 11.27 0.00 36.95 2.08
5219 5969 1.210413 CATCGGTCTCGGCGATAGG 59.790 63.158 11.27 0.00 36.95 2.57
5220 5970 1.972223 ATCGGTCTCGGCGATAGGG 60.972 63.158 11.27 0.00 36.95 3.53
5221 5971 2.693896 ATCGGTCTCGGCGATAGGGT 62.694 60.000 11.27 0.00 36.95 4.34
5222 5972 1.598962 CGGTCTCGGCGATAGGGTA 60.599 63.158 11.27 0.00 0.00 3.69
5223 5973 1.575576 CGGTCTCGGCGATAGGGTAG 61.576 65.000 11.27 0.00 0.00 3.18
5224 5974 1.580437 GTCTCGGCGATAGGGTAGC 59.420 63.158 11.27 0.00 0.00 3.58
5225 5975 1.149854 TCTCGGCGATAGGGTAGCA 59.850 57.895 11.27 0.00 0.00 3.49
5226 5976 1.170919 TCTCGGCGATAGGGTAGCAC 61.171 60.000 11.27 0.00 0.00 4.40
5227 5977 1.452953 CTCGGCGATAGGGTAGCACA 61.453 60.000 11.27 0.00 0.00 4.57
5228 5978 1.038681 TCGGCGATAGGGTAGCACAA 61.039 55.000 4.99 0.00 0.00 3.33
5229 5979 0.179094 CGGCGATAGGGTAGCACAAA 60.179 55.000 0.00 0.00 0.00 2.83
5230 5980 1.296727 GGCGATAGGGTAGCACAAAC 58.703 55.000 0.00 0.00 0.00 2.93
5231 5981 1.296727 GCGATAGGGTAGCACAAACC 58.703 55.000 0.00 0.00 36.19 3.27
5232 5982 1.134491 GCGATAGGGTAGCACAAACCT 60.134 52.381 0.00 0.00 37.18 3.50
5233 5983 2.101917 GCGATAGGGTAGCACAAACCTA 59.898 50.000 0.58 0.58 39.69 3.08
5234 5984 3.244112 GCGATAGGGTAGCACAAACCTAT 60.244 47.826 9.41 9.41 46.20 2.57
5236 5986 2.981859 AGGGTAGCACAAACCTATCG 57.018 50.000 0.00 0.00 37.18 2.92
5237 5987 1.134491 AGGGTAGCACAAACCTATCGC 60.134 52.381 0.00 0.00 37.18 4.58
5238 5988 1.134491 GGGTAGCACAAACCTATCGCT 60.134 52.381 0.00 0.00 37.18 4.93
5239 5989 2.101917 GGGTAGCACAAACCTATCGCTA 59.898 50.000 0.00 0.00 37.18 4.26
5240 5990 3.381949 GGTAGCACAAACCTATCGCTAG 58.618 50.000 0.00 0.00 35.95 3.42
5241 5991 3.067742 GGTAGCACAAACCTATCGCTAGA 59.932 47.826 0.00 0.00 35.95 2.43
5242 5992 3.444703 AGCACAAACCTATCGCTAGAG 57.555 47.619 0.00 0.00 0.00 2.43
5243 5993 1.861575 GCACAAACCTATCGCTAGAGC 59.138 52.381 0.00 0.00 37.78 4.09
5244 5994 2.474816 CACAAACCTATCGCTAGAGCC 58.525 52.381 0.00 0.00 37.91 4.70
5245 5995 2.101582 CACAAACCTATCGCTAGAGCCT 59.898 50.000 0.00 0.00 37.91 4.58
5246 5996 2.101582 ACAAACCTATCGCTAGAGCCTG 59.898 50.000 0.00 0.00 37.91 4.85
5247 5997 1.333177 AACCTATCGCTAGAGCCTGG 58.667 55.000 0.00 0.00 37.91 4.45
5248 5998 1.182385 ACCTATCGCTAGAGCCTGGC 61.182 60.000 11.65 11.65 37.91 4.85
5253 6003 2.731374 GCTAGAGCCTGGCGGTAG 59.269 66.667 20.05 20.05 34.31 3.18
5254 6004 2.862223 GCTAGAGCCTGGCGGTAGG 61.862 68.421 23.44 12.56 40.95 3.18
5255 6005 1.152735 CTAGAGCCTGGCGGTAGGA 60.153 63.158 13.96 0.00 40.42 2.94
5256 6006 0.540830 CTAGAGCCTGGCGGTAGGAT 60.541 60.000 13.96 0.00 40.42 3.24
5257 6007 0.105658 TAGAGCCTGGCGGTAGGATT 60.106 55.000 13.96 0.00 40.42 3.01
5258 6008 0.983378 AGAGCCTGGCGGTAGGATTT 60.983 55.000 13.96 0.00 40.42 2.17
5259 6009 0.756903 GAGCCTGGCGGTAGGATTTA 59.243 55.000 13.96 0.00 40.42 1.40
5260 6010 0.468648 AGCCTGGCGGTAGGATTTAC 59.531 55.000 13.96 0.00 40.42 2.01
5261 6011 0.534427 GCCTGGCGGTAGGATTTACC 60.534 60.000 1.35 0.00 40.42 2.85
5268 6018 2.214387 GGTAGGATTTACCGTCACCG 57.786 55.000 0.00 0.00 44.74 4.94
5269 6019 1.478105 GGTAGGATTTACCGTCACCGT 59.522 52.381 0.00 0.00 44.74 4.83
5270 6020 2.480244 GGTAGGATTTACCGTCACCGTC 60.480 54.545 0.00 0.00 44.74 4.79
5271 6021 1.259609 AGGATTTACCGTCACCGTCA 58.740 50.000 0.00 0.00 44.74 4.35
5272 6022 1.067354 AGGATTTACCGTCACCGTCAC 60.067 52.381 0.00 0.00 44.74 3.67
5273 6023 0.986992 GATTTACCGTCACCGTCACG 59.013 55.000 0.00 0.00 36.99 4.35
5274 6024 1.010419 ATTTACCGTCACCGTCACGC 61.010 55.000 0.00 0.00 35.87 5.34
5275 6025 3.556543 TTACCGTCACCGTCACGCC 62.557 63.158 0.00 0.00 35.87 5.68
5279 6029 4.955774 GTCACCGTCACGCCCGTT 62.956 66.667 0.00 0.00 0.00 4.44
5280 6030 4.224274 TCACCGTCACGCCCGTTT 62.224 61.111 0.00 0.00 0.00 3.60
5281 6031 4.007940 CACCGTCACGCCCGTTTG 62.008 66.667 0.00 0.00 0.00 2.93
5282 6032 4.224274 ACCGTCACGCCCGTTTGA 62.224 61.111 0.00 0.00 0.00 2.69
5283 6033 2.740826 CCGTCACGCCCGTTTGAT 60.741 61.111 0.00 0.00 0.00 2.57
5284 6034 2.474266 CGTCACGCCCGTTTGATG 59.526 61.111 0.00 0.00 0.00 3.07
5285 6035 2.024868 CGTCACGCCCGTTTGATGA 61.025 57.895 0.00 0.00 31.40 2.92
5286 6036 1.787847 GTCACGCCCGTTTGATGAG 59.212 57.895 0.00 0.00 0.00 2.90
5287 6037 0.669318 GTCACGCCCGTTTGATGAGA 60.669 55.000 0.00 0.00 0.00 3.27
5288 6038 0.034198 TCACGCCCGTTTGATGAGAA 59.966 50.000 0.00 0.00 0.00 2.87
5289 6039 0.871722 CACGCCCGTTTGATGAGAAA 59.128 50.000 0.00 0.00 0.00 2.52
5290 6040 1.265635 CACGCCCGTTTGATGAGAAAA 59.734 47.619 0.00 0.00 0.00 2.29
5291 6041 1.535462 ACGCCCGTTTGATGAGAAAAG 59.465 47.619 0.00 0.00 0.00 2.27
5292 6042 1.135689 CGCCCGTTTGATGAGAAAAGG 60.136 52.381 0.00 0.00 35.07 3.11
5293 6043 2.159382 GCCCGTTTGATGAGAAAAGGA 58.841 47.619 0.00 0.00 36.80 3.36
5294 6044 2.095212 GCCCGTTTGATGAGAAAAGGAC 60.095 50.000 0.00 0.00 36.80 3.85
5295 6045 3.412386 CCCGTTTGATGAGAAAAGGACT 58.588 45.455 0.00 0.00 36.80 3.85
5296 6046 3.437049 CCCGTTTGATGAGAAAAGGACTC 59.563 47.826 0.00 0.00 36.80 3.36
5297 6047 4.319177 CCGTTTGATGAGAAAAGGACTCT 58.681 43.478 0.00 0.00 36.80 3.24
5298 6048 5.479306 CCGTTTGATGAGAAAAGGACTCTA 58.521 41.667 0.00 0.00 36.80 2.43
5299 6049 5.348997 CCGTTTGATGAGAAAAGGACTCTAC 59.651 44.000 0.00 0.00 36.80 2.59
5300 6050 5.348997 CGTTTGATGAGAAAAGGACTCTACC 59.651 44.000 0.00 0.00 35.66 3.18
5301 6051 4.720649 TGATGAGAAAAGGACTCTACCG 57.279 45.455 0.00 0.00 35.66 4.02
5302 6052 3.119101 TGATGAGAAAAGGACTCTACCGC 60.119 47.826 0.00 0.00 35.66 5.68
5303 6053 1.549170 TGAGAAAAGGACTCTACCGCC 59.451 52.381 0.00 0.00 35.66 6.13
5304 6054 1.549170 GAGAAAAGGACTCTACCGCCA 59.451 52.381 0.00 0.00 34.73 5.69
5305 6055 2.168728 GAGAAAAGGACTCTACCGCCAT 59.831 50.000 0.00 0.00 34.73 4.40
5306 6056 2.093447 AGAAAAGGACTCTACCGCCATG 60.093 50.000 0.00 0.00 34.73 3.66
5307 6057 0.541863 AAAGGACTCTACCGCCATGG 59.458 55.000 7.63 7.63 46.41 3.66
5308 6058 0.325296 AAGGACTCTACCGCCATGGA 60.325 55.000 18.40 0.00 42.00 3.41
5309 6059 0.105453 AGGACTCTACCGCCATGGAT 60.105 55.000 18.40 1.87 42.00 3.41
5310 6060 0.034059 GGACTCTACCGCCATGGATG 59.966 60.000 18.40 7.75 42.00 3.51
5327 6077 6.873997 CATGGATGGATGGATGGATTAATTG 58.126 40.000 0.00 0.00 0.00 2.32
5328 6078 6.216854 TGGATGGATGGATGGATTAATTGA 57.783 37.500 0.00 0.00 0.00 2.57
5329 6079 6.807286 TGGATGGATGGATGGATTAATTGAT 58.193 36.000 0.00 0.00 0.00 2.57
5330 6080 6.666113 TGGATGGATGGATGGATTAATTGATG 59.334 38.462 0.00 0.00 0.00 3.07
5331 6081 5.988310 TGGATGGATGGATTAATTGATGC 57.012 39.130 0.00 0.00 0.00 3.91
5332 6082 5.395611 TGGATGGATGGATTAATTGATGCA 58.604 37.500 6.87 6.87 0.00 3.96
5333 6083 6.020389 TGGATGGATGGATTAATTGATGCAT 58.980 36.000 15.62 15.62 40.25 3.96
5334 6084 6.071051 TGGATGGATGGATTAATTGATGCATG 60.071 38.462 19.66 0.00 38.07 4.06
5335 6085 5.142061 TGGATGGATTAATTGATGCATGC 57.858 39.130 22.62 22.62 43.25 4.06
5336 6086 5.142061 GGATGGATTAATTGATGCATGCA 57.858 39.130 25.04 25.04 42.76 3.96
5337 6087 5.247337 TGGATGGATTAATTGATGCATGCAT 59.753 36.000 32.66 32.66 45.91 3.96
5338 6088 5.580691 GGATGGATTAATTGATGCATGCATG 59.419 40.000 36.73 22.70 42.76 4.06
5403 6154 8.773216 AGGAAATATTCTAGCTTCCTTGTACTT 58.227 33.333 0.00 0.00 44.19 2.24
5453 8494 1.009829 CCACGAGGCTCAAGCAATAC 58.990 55.000 15.95 0.00 44.36 1.89
5475 8516 2.870175 ACGAACAATTCCACCAATCCA 58.130 42.857 0.00 0.00 0.00 3.41
5487 8528 2.776536 CACCAATCCATCTCTCCCTTCT 59.223 50.000 0.00 0.00 0.00 2.85
5488 8529 3.969976 CACCAATCCATCTCTCCCTTCTA 59.030 47.826 0.00 0.00 0.00 2.10
5490 8531 4.410555 ACCAATCCATCTCTCCCTTCTAAC 59.589 45.833 0.00 0.00 0.00 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 3.806625 ATTGATGGCCACTAATGCAAC 57.193 42.857 8.16 0.00 0.00 4.17
102 103 4.449743 CAGTCGATTCCGGTTGTTTTTCTA 59.550 41.667 0.00 0.00 36.24 2.10
111 112 1.893801 AGAGAACAGTCGATTCCGGTT 59.106 47.619 0.00 0.00 36.24 4.44
113 114 2.656560 AAGAGAACAGTCGATTCCGG 57.343 50.000 0.00 0.00 36.24 5.14
116 117 5.095691 TGCAAAAAGAGAACAGTCGATTC 57.904 39.130 0.00 0.00 0.00 2.52
117 118 5.695851 ATGCAAAAAGAGAACAGTCGATT 57.304 34.783 0.00 0.00 0.00 3.34
118 119 5.455392 CAATGCAAAAAGAGAACAGTCGAT 58.545 37.500 0.00 0.00 0.00 3.59
120 121 3.976942 CCAATGCAAAAAGAGAACAGTCG 59.023 43.478 0.00 0.00 0.00 4.18
121 122 5.009010 TCTCCAATGCAAAAAGAGAACAGTC 59.991 40.000 0.00 0.00 30.88 3.51
122 123 4.889409 TCTCCAATGCAAAAAGAGAACAGT 59.111 37.500 0.00 0.00 30.88 3.55
123 124 5.443185 TCTCCAATGCAAAAAGAGAACAG 57.557 39.130 0.00 0.00 30.88 3.16
124 125 4.261741 GCTCTCCAATGCAAAAAGAGAACA 60.262 41.667 17.81 0.00 36.42 3.18
125 126 4.233005 GCTCTCCAATGCAAAAAGAGAAC 58.767 43.478 17.81 7.98 36.42 3.01
126 127 3.058016 CGCTCTCCAATGCAAAAAGAGAA 60.058 43.478 17.81 2.55 36.42 2.87
127 128 2.485426 CGCTCTCCAATGCAAAAAGAGA 59.515 45.455 17.81 13.23 36.42 3.10
128 129 2.227388 ACGCTCTCCAATGCAAAAAGAG 59.773 45.455 12.07 12.07 37.20 2.85
129 130 2.229792 ACGCTCTCCAATGCAAAAAGA 58.770 42.857 0.00 0.00 0.00 2.52
130 131 2.712057 ACGCTCTCCAATGCAAAAAG 57.288 45.000 0.00 0.00 0.00 2.27
131 132 3.058293 CACTACGCTCTCCAATGCAAAAA 60.058 43.478 0.00 0.00 0.00 1.94
140 141 1.186200 ATTGCTCACTACGCTCTCCA 58.814 50.000 0.00 0.00 0.00 3.86
141 142 2.099263 TGTATTGCTCACTACGCTCTCC 59.901 50.000 0.00 0.00 0.00 3.71
217 218 6.398517 CGAAATGCAAACCGAAATAACTGAAC 60.399 38.462 0.00 0.00 0.00 3.18
220 221 4.323336 CCGAAATGCAAACCGAAATAACTG 59.677 41.667 0.00 0.00 0.00 3.16
226 227 0.319125 GGCCGAAATGCAAACCGAAA 60.319 50.000 0.00 0.00 0.00 3.46
239 240 0.316841 GTTTCAGCATTTGGGCCGAA 59.683 50.000 9.06 9.06 0.00 4.30
246 247 7.857569 AGTTCAATTGAATGTTTCAGCATTTG 58.142 30.769 23.05 0.00 41.38 2.32
268 269 6.888105 AGGAATTCCAATGTTTTGTTGAGTT 58.112 32.000 26.22 0.00 38.89 3.01
270 271 7.495279 TCAAAGGAATTCCAATGTTTTGTTGAG 59.505 33.333 26.22 5.84 38.89 3.02
276 277 8.806429 ACTTTTCAAAGGAATTCCAATGTTTT 57.194 26.923 26.22 14.12 40.31 2.43
321 324 3.184783 CGGCAATTTTGTAGTACACGTGA 59.815 43.478 25.01 2.68 0.00 4.35
324 327 3.799137 ACGGCAATTTTGTAGTACACG 57.201 42.857 1.43 4.16 0.00 4.49
334 337 8.983307 TTCGGTTAAAATATTACGGCAATTTT 57.017 26.923 0.00 0.00 36.87 1.82
338 341 6.150809 ACCTTTCGGTTAAAATATTACGGCAA 59.849 34.615 0.00 0.00 42.13 4.52
340 343 6.122850 ACCTTTCGGTTAAAATATTACGGC 57.877 37.500 0.00 0.00 42.13 5.68
371 374 2.917933 TCGGATTTCAGTAGGCATTGG 58.082 47.619 0.00 0.00 0.00 3.16
386 389 8.420222 GTGAGATTATGATAGGATTCATCGGAT 58.580 37.037 0.00 0.00 37.51 4.18
388 391 7.705752 CAGTGAGATTATGATAGGATTCATCGG 59.294 40.741 0.00 0.00 37.51 4.18
397 400 6.450545 TCGCTTTCAGTGAGATTATGATAGG 58.549 40.000 0.00 0.00 30.20 2.57
398 401 7.864882 TCTTCGCTTTCAGTGAGATTATGATAG 59.135 37.037 0.00 0.00 35.96 2.08
413 416 8.997621 ATAATACTAGTTTGTCTTCGCTTTCA 57.002 30.769 0.00 0.00 0.00 2.69
418 421 9.512435 TTCACTATAATACTAGTTTGTCTTCGC 57.488 33.333 0.00 0.00 29.41 4.70
615 682 3.314357 GGTAAAAGTGGCGGGCTTAATAG 59.686 47.826 2.38 0.00 0.00 1.73
688 756 1.056750 CGTCGACGGTTTGAATCGC 59.943 57.895 29.70 0.00 35.54 4.58
926 1004 4.592192 ACCATGCTCCGATCCGCG 62.592 66.667 0.00 0.00 40.47 6.46
1058 1136 0.988832 AAACAGATACGGGGGCAAGA 59.011 50.000 0.00 0.00 0.00 3.02
1061 1139 0.322997 CCAAAACAGATACGGGGGCA 60.323 55.000 0.00 0.00 0.00 5.36
1068 1146 6.584185 ACAAACCATACCCAAAACAGATAC 57.416 37.500 0.00 0.00 0.00 2.24
1105 1183 1.534595 GCTGCAAGAGGTCAACAGAAG 59.465 52.381 0.00 0.00 34.07 2.85
1110 1188 2.012673 CCATAGCTGCAAGAGGTCAAC 58.987 52.381 1.02 0.00 34.07 3.18
1114 1197 0.835941 CCTCCATAGCTGCAAGAGGT 59.164 55.000 15.10 0.00 39.45 3.85
1223 1306 5.967088 AGTAATTTGAACAAAACGAACCGAC 59.033 36.000 4.12 0.00 33.56 4.79
1226 1309 8.111836 GGAAAAGTAATTTGAACAAAACGAACC 58.888 33.333 4.12 0.00 33.56 3.62
1239 1322 4.202070 ACACACACGGGGAAAAGTAATTTG 60.202 41.667 0.00 0.00 0.00 2.32
1242 1325 3.217681 ACACACACGGGGAAAAGTAAT 57.782 42.857 0.00 0.00 0.00 1.89
1244 1327 3.134442 ACTTACACACACGGGGAAAAGTA 59.866 43.478 0.00 0.00 0.00 2.24
1245 1328 2.092807 ACTTACACACACGGGGAAAAGT 60.093 45.455 0.00 0.00 0.00 2.66
1246 1329 2.567985 ACTTACACACACGGGGAAAAG 58.432 47.619 0.00 0.00 0.00 2.27
1247 1330 2.713863 ACTTACACACACGGGGAAAA 57.286 45.000 0.00 0.00 0.00 2.29
1261 1344 3.123804 CACGCCATGGTCTGATACTTAC 58.876 50.000 14.67 0.00 0.00 2.34
1331 1414 1.130749 CGATCCGTCTCGTCAAAGTCT 59.869 52.381 0.00 0.00 34.00 3.24
1430 1514 0.409484 CCCCTCCCAAATCCAACACT 59.591 55.000 0.00 0.00 0.00 3.55
1449 1533 0.736325 CATCACCGGAGTCGAACCAC 60.736 60.000 9.46 0.00 39.00 4.16
1463 1547 7.472543 AGTTCAACAAACTACAAACTCATCAC 58.527 34.615 0.00 0.00 46.55 3.06
1600 1684 1.600957 CCATCAGGTCTTAATGCTGCG 59.399 52.381 0.00 0.00 0.00 5.18
1663 1747 0.179045 ATGCAACATACTCCCTCCGC 60.179 55.000 0.00 0.00 0.00 5.54
1665 1749 3.567478 AGAATGCAACATACTCCCTCC 57.433 47.619 0.00 0.00 0.00 4.30
1995 2570 2.590821 GCCCATGATGCTATTCCTGTT 58.409 47.619 0.00 0.00 0.00 3.16
1996 2571 1.544093 CGCCCATGATGCTATTCCTGT 60.544 52.381 0.00 0.00 0.00 4.00
2014 2589 1.952990 TCTCTCATGAGATCCTGTCGC 59.047 52.381 25.30 0.00 43.73 5.19
2027 2602 7.436933 TCTATTTCGTGTGCAATATCTCTCAT 58.563 34.615 0.00 0.00 0.00 2.90
2140 2716 7.549134 TGCAGAATAATGAACTGGTGTTAGTAG 59.451 37.037 0.00 0.00 36.39 2.57
2441 3019 3.806949 AGATAACCTTTGTCTTGCCCA 57.193 42.857 0.00 0.00 0.00 5.36
2514 3092 3.814842 TCAACATACAGTGGAGCAAACAG 59.185 43.478 0.00 0.00 0.00 3.16
2519 3097 4.020307 TCTCAATCAACATACAGTGGAGCA 60.020 41.667 0.00 0.00 32.49 4.26
2630 3208 4.899352 AGACTAGCTGGTGATTGTTTCT 57.101 40.909 7.76 0.00 0.00 2.52
2631 3209 5.064071 GCTAAGACTAGCTGGTGATTGTTTC 59.936 44.000 7.76 0.00 46.12 2.78
2663 3241 7.358352 CGACTAAATTGCCTTCAAATTGTGTTC 60.358 37.037 0.00 0.00 35.56 3.18
2670 3248 6.817765 TTCTCGACTAAATTGCCTTCAAAT 57.182 33.333 0.00 0.00 35.56 2.32
2686 3264 8.649973 AACCATCACTTCTATTTATTCTCGAC 57.350 34.615 0.00 0.00 0.00 4.20
2739 3320 1.468054 GCAATCGACCAAGCCATTGTC 60.468 52.381 0.00 0.00 34.39 3.18
2742 3323 0.813184 CAGCAATCGACCAAGCCATT 59.187 50.000 0.00 0.00 0.00 3.16
2750 3331 5.527582 ACAATTTATAGGACAGCAATCGACC 59.472 40.000 0.00 0.00 0.00 4.79
2778 3359 5.277825 CAAACGCAATAAGTGAAAGTTCCA 58.722 37.500 0.00 0.00 0.00 3.53
2779 3360 4.148174 GCAAACGCAATAAGTGAAAGTTCC 59.852 41.667 0.00 0.00 0.00 3.62
2793 3374 7.596621 TGATAAATTTTGACATAGCAAACGCAA 59.403 29.630 0.00 0.00 37.48 4.85
2830 3411 8.183104 TGTTGAACATAACAAATATCACCCAA 57.817 30.769 0.00 0.00 37.60 4.12
2880 3461 8.480643 AAAGAAGTATATTTGACGAACCTGAG 57.519 34.615 0.00 0.00 0.00 3.35
2884 3465 7.333672 ACCAGAAAGAAGTATATTTGACGAACC 59.666 37.037 0.00 0.00 0.00 3.62
3230 3811 4.323792 CCAGGAAGCTGAGTGGAATAGAAA 60.324 45.833 2.89 0.00 31.04 2.52
3284 3865 9.507329 TTTAGCTACAATGAGATTGAGAGTTTT 57.493 29.630 0.00 0.00 42.83 2.43
3629 4210 6.294508 GGCACAAACACCTACACAGATATTTT 60.295 38.462 0.00 0.00 0.00 1.82
3696 4277 2.371179 AGAGCATGTGATCAGGGTATGG 59.629 50.000 0.00 0.00 36.23 2.74
3741 4322 6.995091 AGGCAAATAGCTTAATCAACCTAGAG 59.005 38.462 0.00 0.00 44.79 2.43
3890 4471 1.464997 GATCTGTCAAACGGAAGGCAC 59.535 52.381 0.00 0.00 37.01 5.01
3906 4487 7.782390 CAGTATACCTGCGGAGAGAGGATCT 62.782 52.000 5.10 0.00 41.27 2.75
4058 4639 2.093869 GCTAACCCACTTGTACGATCCA 60.094 50.000 0.00 0.00 0.00 3.41
4096 4677 6.913170 TCATCCTGTCACTTTTATCTTTTGC 58.087 36.000 0.00 0.00 0.00 3.68
4158 4739 6.938030 TCAATAACTTATGGTGTTCGTCCTTT 59.062 34.615 0.00 0.00 0.00 3.11
4255 4840 9.891828 TGTATTTTAAGTGCAAATGTAGTGAAG 57.108 29.630 0.00 0.00 0.00 3.02
4302 5000 5.476599 CCAACATGATCTGTTAACTCCCAAA 59.523 40.000 7.22 0.00 46.43 3.28
4391 5110 4.082625 TGTCGCTGCAATGATCAAGAAAAT 60.083 37.500 0.00 0.00 0.00 1.82
4397 5116 1.465777 CACTGTCGCTGCAATGATCAA 59.534 47.619 0.00 0.00 0.00 2.57
4442 5161 1.202639 AGCGTGTGGTTCATGTCTTCA 60.203 47.619 0.00 0.00 35.64 3.02
4475 5194 3.899395 GGTCATGTACCGTTGGGC 58.101 61.111 0.00 0.00 38.88 5.36
4586 5307 1.904771 CCCCATTCAGTACAGCGGA 59.095 57.895 0.00 0.00 0.00 5.54
4610 5331 1.336887 GCCTCGTTCACTACTTCAGCA 60.337 52.381 0.00 0.00 0.00 4.41
4628 5349 0.803117 GGCTCCGTTCTTTTACAGCC 59.197 55.000 0.00 0.00 39.75 4.85
4657 5378 2.177594 AACCTGCCTGAGAGAAGCCG 62.178 60.000 0.00 0.00 0.00 5.52
4716 5437 3.365969 CCCCGACATCTAAAACTGCAAAC 60.366 47.826 0.00 0.00 0.00 2.93
4719 5440 1.626321 TCCCCGACATCTAAAACTGCA 59.374 47.619 0.00 0.00 0.00 4.41
4774 5495 5.524971 TCAATAGTTATGTACACCGGGAG 57.475 43.478 6.32 0.00 0.00 4.30
4777 5498 8.827177 AATACATCAATAGTTATGTACACCGG 57.173 34.615 0.00 0.00 40.40 5.28
5034 5784 2.224281 GCAGCTGTGGTACTATATGGCA 60.224 50.000 16.64 0.00 0.00 4.92
5035 5785 2.417719 GCAGCTGTGGTACTATATGGC 58.582 52.381 16.64 0.00 0.00 4.40
5036 5786 2.610479 CCGCAGCTGTGGTACTATATGG 60.610 54.545 33.81 8.17 40.69 2.74
5037 5787 2.677199 CCGCAGCTGTGGTACTATATG 58.323 52.381 33.81 8.89 40.69 1.78
5038 5788 1.000955 GCCGCAGCTGTGGTACTATAT 59.999 52.381 39.13 0.00 46.99 0.86
5039 5789 0.387929 GCCGCAGCTGTGGTACTATA 59.612 55.000 39.13 0.00 46.99 1.31
5040 5790 1.144057 GCCGCAGCTGTGGTACTAT 59.856 57.895 39.13 0.00 46.99 2.12
5041 5791 2.577059 GCCGCAGCTGTGGTACTA 59.423 61.111 39.13 0.00 46.99 1.82
5042 5792 4.394712 GGCCGCAGCTGTGGTACT 62.395 66.667 39.13 0.00 46.99 2.73
5043 5793 3.976701 ATGGCCGCAGCTGTGGTAC 62.977 63.158 39.13 32.22 46.99 3.34
5044 5794 3.680620 GATGGCCGCAGCTGTGGTA 62.681 63.158 39.13 30.23 46.99 3.25
5047 5797 2.827190 ATGATGGCCGCAGCTGTG 60.827 61.111 20.56 20.56 39.73 3.66
5048 5798 2.827190 CATGATGGCCGCAGCTGT 60.827 61.111 16.64 0.00 39.73 4.40
5049 5799 2.827190 ACATGATGGCCGCAGCTG 60.827 61.111 10.11 10.11 39.73 4.24
5050 5800 2.827190 CACATGATGGCCGCAGCT 60.827 61.111 0.00 0.00 39.73 4.24
5051 5801 4.564116 GCACATGATGGCCGCAGC 62.564 66.667 0.00 0.00 38.76 5.25
5052 5802 3.120979 CTGCACATGATGGCCGCAG 62.121 63.158 15.81 15.81 43.55 5.18
5081 5831 2.422127 AGGGTCAAAACGCAAATATCGG 59.578 45.455 0.00 0.00 40.65 4.18
5086 5836 4.508662 TCAAAAAGGGTCAAAACGCAAAT 58.491 34.783 0.00 0.00 40.65 2.32
5089 5839 3.594603 TTCAAAAAGGGTCAAAACGCA 57.405 38.095 0.00 0.00 40.65 5.24
5112 5862 2.746362 CCAGAGTCAGATTTGGCTGAAC 59.254 50.000 0.00 0.00 45.69 3.18
5116 5866 2.373169 TGAACCAGAGTCAGATTTGGCT 59.627 45.455 0.00 0.00 43.35 4.75
5126 5876 8.110860 TCTTGGAATTTTTATGAACCAGAGTC 57.889 34.615 0.00 0.00 0.00 3.36
5129 5879 8.742777 CAGATCTTGGAATTTTTATGAACCAGA 58.257 33.333 0.00 0.00 0.00 3.86
5130 5880 8.742777 TCAGATCTTGGAATTTTTATGAACCAG 58.257 33.333 0.00 0.00 0.00 4.00
5146 5896 3.969287 TGAACCAGAGTCAGATCTTGG 57.031 47.619 8.57 8.57 0.00 3.61
5149 5899 9.525826 AAATTTTTATGAACCAGAGTCAGATCT 57.474 29.630 0.00 0.00 0.00 2.75
5150 5900 9.780413 GAAATTTTTATGAACCAGAGTCAGATC 57.220 33.333 0.00 0.00 0.00 2.75
5158 5908 8.792830 AGATCTCGAAATTTTTATGAACCAGA 57.207 30.769 0.00 0.00 0.00 3.86
5161 5911 9.422196 CGTTAGATCTCGAAATTTTTATGAACC 57.578 33.333 0.00 0.00 0.00 3.62
5162 5912 8.934947 GCGTTAGATCTCGAAATTTTTATGAAC 58.065 33.333 0.00 0.00 0.00 3.18
5163 5913 8.879759 AGCGTTAGATCTCGAAATTTTTATGAA 58.120 29.630 0.00 0.00 0.00 2.57
5164 5914 8.420374 AGCGTTAGATCTCGAAATTTTTATGA 57.580 30.769 0.00 0.00 0.00 2.15
5165 5915 9.490663 AAAGCGTTAGATCTCGAAATTTTTATG 57.509 29.630 0.00 0.00 0.00 1.90
5167 5917 9.887406 AAAAAGCGTTAGATCTCGAAATTTTTA 57.113 25.926 16.73 0.00 32.72 1.52
5168 5918 8.797266 AAAAAGCGTTAGATCTCGAAATTTTT 57.203 26.923 0.00 9.40 31.31 1.94
5169 5919 7.537649 GGAAAAAGCGTTAGATCTCGAAATTTT 59.462 33.333 0.00 6.46 0.00 1.82
5170 5920 7.021790 GGAAAAAGCGTTAGATCTCGAAATTT 58.978 34.615 0.00 0.00 0.00 1.82
5171 5921 6.148811 TGGAAAAAGCGTTAGATCTCGAAATT 59.851 34.615 0.00 0.00 0.00 1.82
5172 5922 5.642063 TGGAAAAAGCGTTAGATCTCGAAAT 59.358 36.000 0.00 0.00 0.00 2.17
5173 5923 4.992319 TGGAAAAAGCGTTAGATCTCGAAA 59.008 37.500 0.00 0.00 0.00 3.46
5174 5924 4.387862 GTGGAAAAAGCGTTAGATCTCGAA 59.612 41.667 0.00 0.00 0.00 3.71
5175 5925 3.924686 GTGGAAAAAGCGTTAGATCTCGA 59.075 43.478 0.00 0.00 0.00 4.04
5176 5926 3.927142 AGTGGAAAAAGCGTTAGATCTCG 59.073 43.478 0.00 0.00 0.00 4.04
5177 5927 4.691216 ACAGTGGAAAAAGCGTTAGATCTC 59.309 41.667 0.00 0.00 0.00 2.75
5178 5928 4.642429 ACAGTGGAAAAAGCGTTAGATCT 58.358 39.130 0.00 0.00 0.00 2.75
5179 5929 4.451096 TGACAGTGGAAAAAGCGTTAGATC 59.549 41.667 0.00 0.00 0.00 2.75
5180 5930 4.385825 TGACAGTGGAAAAAGCGTTAGAT 58.614 39.130 0.00 0.00 0.00 1.98
5181 5931 3.799366 TGACAGTGGAAAAAGCGTTAGA 58.201 40.909 0.00 0.00 0.00 2.10
5182 5932 4.666655 CGATGACAGTGGAAAAAGCGTTAG 60.667 45.833 0.00 0.00 0.00 2.34
5183 5933 3.185594 CGATGACAGTGGAAAAAGCGTTA 59.814 43.478 0.00 0.00 0.00 3.18
5184 5934 2.032030 CGATGACAGTGGAAAAAGCGTT 60.032 45.455 0.00 0.00 0.00 4.84
5185 5935 1.531149 CGATGACAGTGGAAAAAGCGT 59.469 47.619 0.00 0.00 0.00 5.07
5186 5936 1.135972 CCGATGACAGTGGAAAAAGCG 60.136 52.381 0.00 0.00 0.00 4.68
5187 5937 1.880027 ACCGATGACAGTGGAAAAAGC 59.120 47.619 2.91 0.00 0.00 3.51
5188 5938 3.403038 AGACCGATGACAGTGGAAAAAG 58.597 45.455 2.91 0.00 0.00 2.27
5189 5939 3.399330 GAGACCGATGACAGTGGAAAAA 58.601 45.455 2.91 0.00 0.00 1.94
5190 5940 2.609491 CGAGACCGATGACAGTGGAAAA 60.609 50.000 2.91 0.00 38.22 2.29
5191 5941 1.067846 CGAGACCGATGACAGTGGAAA 60.068 52.381 2.91 0.00 38.22 3.13
5192 5942 0.526211 CGAGACCGATGACAGTGGAA 59.474 55.000 2.91 0.00 38.22 3.53
5193 5943 1.313091 CCGAGACCGATGACAGTGGA 61.313 60.000 2.91 0.00 38.22 4.02
5194 5944 1.139734 CCGAGACCGATGACAGTGG 59.860 63.158 0.00 0.00 38.22 4.00
5195 5945 1.517257 GCCGAGACCGATGACAGTG 60.517 63.158 0.00 0.00 38.22 3.66
5196 5946 2.885861 GCCGAGACCGATGACAGT 59.114 61.111 0.00 0.00 38.22 3.55
5197 5947 2.064723 ATCGCCGAGACCGATGACAG 62.065 60.000 0.00 0.00 43.14 3.51
5198 5948 0.816421 TATCGCCGAGACCGATGACA 60.816 55.000 6.55 0.00 44.32 3.58
5199 5949 0.110147 CTATCGCCGAGACCGATGAC 60.110 60.000 6.55 0.00 44.32 3.06
5200 5950 1.235281 CCTATCGCCGAGACCGATGA 61.235 60.000 6.55 0.00 44.32 2.92
5201 5951 1.210413 CCTATCGCCGAGACCGATG 59.790 63.158 6.55 0.00 44.32 3.84
5202 5952 1.972223 CCCTATCGCCGAGACCGAT 60.972 63.158 0.00 1.83 46.12 4.18
5203 5953 2.043604 TACCCTATCGCCGAGACCGA 62.044 60.000 0.00 0.00 39.24 4.69
5204 5954 1.575576 CTACCCTATCGCCGAGACCG 61.576 65.000 0.00 0.00 0.00 4.79
5205 5955 1.864725 GCTACCCTATCGCCGAGACC 61.865 65.000 0.00 0.00 0.00 3.85
5206 5956 1.170919 TGCTACCCTATCGCCGAGAC 61.171 60.000 0.00 0.00 0.00 3.36
5207 5957 1.149854 TGCTACCCTATCGCCGAGA 59.850 57.895 0.00 0.00 0.00 4.04
5208 5958 1.286260 GTGCTACCCTATCGCCGAG 59.714 63.158 0.00 0.00 0.00 4.63
5209 5959 1.038681 TTGTGCTACCCTATCGCCGA 61.039 55.000 0.00 0.00 0.00 5.54
5210 5960 0.179094 TTTGTGCTACCCTATCGCCG 60.179 55.000 0.00 0.00 0.00 6.46
5211 5961 1.296727 GTTTGTGCTACCCTATCGCC 58.703 55.000 0.00 0.00 0.00 5.54
5212 5962 1.134491 AGGTTTGTGCTACCCTATCGC 60.134 52.381 0.00 0.00 36.27 4.58
5213 5963 2.981859 AGGTTTGTGCTACCCTATCG 57.018 50.000 0.00 0.00 36.27 2.92
5214 5964 4.557205 CGATAGGTTTGTGCTACCCTATC 58.443 47.826 12.47 12.47 46.58 2.08
5215 5965 3.244112 GCGATAGGTTTGTGCTACCCTAT 60.244 47.826 0.00 0.00 41.78 2.57
5216 5966 2.101917 GCGATAGGTTTGTGCTACCCTA 59.898 50.000 0.00 0.00 36.27 3.53
5217 5967 1.134491 GCGATAGGTTTGTGCTACCCT 60.134 52.381 0.00 0.00 36.27 4.34
5218 5968 1.296727 GCGATAGGTTTGTGCTACCC 58.703 55.000 0.00 0.00 36.27 3.69
5230 5980 1.589113 GCCAGGCTCTAGCGATAGG 59.411 63.158 8.03 0.00 43.26 2.57
5236 5986 2.731374 CTACCGCCAGGCTCTAGC 59.269 66.667 10.54 0.00 42.76 3.42
5237 5987 0.540830 ATCCTACCGCCAGGCTCTAG 60.541 60.000 10.54 7.52 42.76 2.43
5238 5988 0.105658 AATCCTACCGCCAGGCTCTA 60.106 55.000 10.54 0.00 42.76 2.43
5239 5989 0.983378 AAATCCTACCGCCAGGCTCT 60.983 55.000 10.54 0.00 42.76 4.09
5240 5990 0.756903 TAAATCCTACCGCCAGGCTC 59.243 55.000 10.54 0.00 42.76 4.70
5241 5991 0.468648 GTAAATCCTACCGCCAGGCT 59.531 55.000 10.54 0.00 42.76 4.58
5242 5992 0.534427 GGTAAATCCTACCGCCAGGC 60.534 60.000 0.00 0.00 42.76 4.85
5243 5993 3.700198 GGTAAATCCTACCGCCAGG 57.300 57.895 0.00 0.00 45.13 4.45
5262 6012 4.955774 AACGGGCGTGACGGTGAC 62.956 66.667 7.25 0.00 35.23 3.67
5263 6013 4.224274 AAACGGGCGTGACGGTGA 62.224 61.111 7.25 0.00 35.23 4.02
5264 6014 4.007940 CAAACGGGCGTGACGGTG 62.008 66.667 7.25 0.00 35.23 4.94
5265 6015 3.524648 ATCAAACGGGCGTGACGGT 62.525 57.895 7.25 0.00 35.23 4.83
5266 6016 2.740826 ATCAAACGGGCGTGACGG 60.741 61.111 7.25 0.00 35.23 4.79
5267 6017 1.955529 CTCATCAAACGGGCGTGACG 61.956 60.000 0.00 0.00 37.36 4.35
5268 6018 0.669318 TCTCATCAAACGGGCGTGAC 60.669 55.000 0.00 0.00 0.00 3.67
5269 6019 0.034198 TTCTCATCAAACGGGCGTGA 59.966 50.000 0.00 0.00 0.00 4.35
5270 6020 0.871722 TTTCTCATCAAACGGGCGTG 59.128 50.000 0.00 0.00 0.00 5.34
5271 6021 1.535462 CTTTTCTCATCAAACGGGCGT 59.465 47.619 0.00 0.00 0.00 5.68
5272 6022 1.135689 CCTTTTCTCATCAAACGGGCG 60.136 52.381 0.00 0.00 0.00 6.13
5273 6023 2.095212 GTCCTTTTCTCATCAAACGGGC 60.095 50.000 0.00 0.00 0.00 6.13
5274 6024 3.412386 AGTCCTTTTCTCATCAAACGGG 58.588 45.455 0.00 0.00 0.00 5.28
5275 6025 4.319177 AGAGTCCTTTTCTCATCAAACGG 58.681 43.478 0.00 0.00 34.73 4.44
5276 6026 5.348997 GGTAGAGTCCTTTTCTCATCAAACG 59.651 44.000 0.00 0.00 34.73 3.60
5277 6027 5.348997 CGGTAGAGTCCTTTTCTCATCAAAC 59.651 44.000 0.00 0.00 34.73 2.93
5278 6028 5.479306 CGGTAGAGTCCTTTTCTCATCAAA 58.521 41.667 0.00 0.00 34.73 2.69
5279 6029 4.620803 GCGGTAGAGTCCTTTTCTCATCAA 60.621 45.833 0.00 0.00 34.73 2.57
5280 6030 3.119101 GCGGTAGAGTCCTTTTCTCATCA 60.119 47.826 0.00 0.00 34.73 3.07
5281 6031 3.449632 GCGGTAGAGTCCTTTTCTCATC 58.550 50.000 0.00 0.00 34.73 2.92
5282 6032 2.168728 GGCGGTAGAGTCCTTTTCTCAT 59.831 50.000 0.00 0.00 34.73 2.90
5283 6033 1.549170 GGCGGTAGAGTCCTTTTCTCA 59.451 52.381 0.00 0.00 34.73 3.27
5284 6034 1.549170 TGGCGGTAGAGTCCTTTTCTC 59.451 52.381 0.00 0.00 0.00 2.87
5285 6035 1.640917 TGGCGGTAGAGTCCTTTTCT 58.359 50.000 0.00 0.00 0.00 2.52
5286 6036 2.280628 CATGGCGGTAGAGTCCTTTTC 58.719 52.381 0.00 0.00 0.00 2.29
5287 6037 1.065418 CCATGGCGGTAGAGTCCTTTT 60.065 52.381 0.00 0.00 0.00 2.27
5288 6038 0.541863 CCATGGCGGTAGAGTCCTTT 59.458 55.000 0.00 0.00 0.00 3.11
5289 6039 0.325296 TCCATGGCGGTAGAGTCCTT 60.325 55.000 6.96 0.00 35.57 3.36
5290 6040 0.105453 ATCCATGGCGGTAGAGTCCT 60.105 55.000 6.96 0.00 35.57 3.85
5291 6041 0.034059 CATCCATGGCGGTAGAGTCC 59.966 60.000 6.96 0.00 35.57 3.85
5292 6042 0.034059 CCATCCATGGCGGTAGAGTC 59.966 60.000 6.96 0.00 41.75 3.36
5293 6043 2.136791 CCATCCATGGCGGTAGAGT 58.863 57.895 6.96 0.00 41.75 3.24
5303 6053 6.666113 TCAATTAATCCATCCATCCATCCATG 59.334 38.462 0.00 0.00 0.00 3.66
5304 6054 6.807286 TCAATTAATCCATCCATCCATCCAT 58.193 36.000 0.00 0.00 0.00 3.41
5305 6055 6.216854 TCAATTAATCCATCCATCCATCCA 57.783 37.500 0.00 0.00 0.00 3.41
5306 6056 6.406624 GCATCAATTAATCCATCCATCCATCC 60.407 42.308 0.00 0.00 0.00 3.51
5307 6057 6.153851 TGCATCAATTAATCCATCCATCCATC 59.846 38.462 0.00 0.00 0.00 3.51
5308 6058 6.020389 TGCATCAATTAATCCATCCATCCAT 58.980 36.000 0.00 0.00 0.00 3.41
5309 6059 5.395611 TGCATCAATTAATCCATCCATCCA 58.604 37.500 0.00 0.00 0.00 3.41
5310 6060 5.988310 TGCATCAATTAATCCATCCATCC 57.012 39.130 0.00 0.00 0.00 3.51
5311 6061 5.810587 GCATGCATCAATTAATCCATCCATC 59.189 40.000 14.21 0.00 0.00 3.51
5312 6062 5.247337 TGCATGCATCAATTAATCCATCCAT 59.753 36.000 18.46 0.00 0.00 3.41
5313 6063 4.589374 TGCATGCATCAATTAATCCATCCA 59.411 37.500 18.46 0.00 0.00 3.41
5314 6064 5.142061 TGCATGCATCAATTAATCCATCC 57.858 39.130 18.46 0.00 0.00 3.51
5315 6065 6.647212 CATGCATGCATCAATTAATCCATC 57.353 37.500 30.07 0.00 33.90 3.51
5332 6082 1.396607 ATCCCGCAACATGCATGCAT 61.397 50.000 27.46 27.46 45.36 3.96
5333 6083 1.605971 AATCCCGCAACATGCATGCA 61.606 50.000 26.53 25.04 45.36 3.96
5334 6084 1.142314 AATCCCGCAACATGCATGC 59.858 52.632 26.53 11.82 45.36 4.06
5335 6085 0.173935 ACAATCCCGCAACATGCATG 59.826 50.000 25.09 25.09 45.36 4.06
5336 6086 1.761449 TACAATCCCGCAACATGCAT 58.239 45.000 0.00 0.00 45.36 3.96
5337 6087 1.761449 ATACAATCCCGCAACATGCA 58.239 45.000 2.99 0.00 45.36 3.96
5338 6088 2.869233 AATACAATCCCGCAACATGC 57.131 45.000 0.00 0.00 40.69 4.06
5339 6089 4.133820 TCCTAATACAATCCCGCAACATG 58.866 43.478 0.00 0.00 0.00 3.21
5340 6090 4.431416 TCCTAATACAATCCCGCAACAT 57.569 40.909 0.00 0.00 0.00 2.71
5341 6091 3.916359 TCCTAATACAATCCCGCAACA 57.084 42.857 0.00 0.00 0.00 3.33
5342 6092 4.396790 TGTTTCCTAATACAATCCCGCAAC 59.603 41.667 0.00 0.00 0.00 4.17
5343 6093 4.590918 TGTTTCCTAATACAATCCCGCAA 58.409 39.130 0.00 0.00 0.00 4.85
5344 6094 4.223556 TGTTTCCTAATACAATCCCGCA 57.776 40.909 0.00 0.00 0.00 5.69
5345 6095 5.411669 CCTATGTTTCCTAATACAATCCCGC 59.588 44.000 0.00 0.00 0.00 6.13
5346 6096 6.531021 ACCTATGTTTCCTAATACAATCCCG 58.469 40.000 0.00 0.00 0.00 5.14
5347 6097 9.503399 CTAACCTATGTTTCCTAATACAATCCC 57.497 37.037 0.00 0.00 35.87 3.85
5453 8494 3.005261 TGGATTGGTGGAATTGTTCGTTG 59.995 43.478 0.00 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.