Multiple sequence alignment - TraesCS3D01G357300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G357300 chr3D 100.000 3962 0 0 1 3962 469490032 469486071 0.000000e+00 7317
1 TraesCS3D01G357300 chr3B 94.905 2944 110 14 695 3605 623834248 623831312 0.000000e+00 4569
2 TraesCS3D01G357300 chr3B 93.003 343 14 4 3618 3960 623831048 623830716 3.560000e-135 492
3 TraesCS3D01G357300 chr3B 92.500 120 6 2 3618 3737 623831241 623831125 6.810000e-38 169
4 TraesCS3D01G357300 chr3B 100.000 58 0 0 631 688 623834175 623834118 1.510000e-19 108
5 TraesCS3D01G357300 chr3A 96.616 2453 49 9 763 3181 611974276 611971824 0.000000e+00 4039
6 TraesCS3D01G357300 chr3A 95.556 360 14 1 3605 3962 611971394 611971035 3.430000e-160 575
7 TraesCS3D01G357300 chr3A 94.828 174 8 1 3212 3384 611971820 611971647 1.810000e-68 270
8 TraesCS3D01G357300 chr3A 86.170 188 16 6 3429 3606 611971647 611971460 1.120000e-45 195
9 TraesCS3D01G357300 chr3A 100.000 57 0 0 632 688 611974278 611974222 5.410000e-19 106
10 TraesCS3D01G357300 chr3A 100.000 40 0 0 3454 3493 611971585 611971546 1.530000e-09 75
11 TraesCS3D01G357300 chr2B 78.771 179 32 6 326 498 231603059 231603237 9.000000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G357300 chr3D 469486071 469490032 3961 True 7317.000000 7317 100.000000 1 3962 1 chr3D.!!$R1 3961
1 TraesCS3D01G357300 chr3B 623830716 623834248 3532 True 1334.500000 4569 95.102000 631 3960 4 chr3B.!!$R1 3329
2 TraesCS3D01G357300 chr3A 611971035 611974278 3243 True 876.666667 4039 95.528333 632 3962 6 chr3A.!!$R1 3330

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
623 624 0.033228 CCATTTGCAGCCCAAACGAA 59.967 50.0 2.62 0.0 45.52 3.85 F
761 762 0.099436 GCGGGATGCTGCTACAAAAG 59.901 55.0 11.31 0.0 41.73 2.27 F
1770 1806 0.521291 TTGCGTGCTATGCCAAGAAC 59.479 50.0 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1887 1923 0.035439 ATAGTTTGCCGTGACCCAGG 60.035 55.000 0.0 0.0 0.0 4.45 R
2277 2313 2.583441 CCCAGCACGACCAAGGAGA 61.583 63.158 0.0 0.0 0.0 3.71 R
3574 3622 0.537188 AGCCGGTCAACACAGATAGG 59.463 55.000 1.9 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.745794 AATCCAAAGAGAAAAATGAACCCA 57.254 33.333 0.00 0.00 0.00 4.51
26 27 6.745794 ATCCAAAGAGAAAAATGAACCCAA 57.254 33.333 0.00 0.00 0.00 4.12
27 28 6.745794 TCCAAAGAGAAAAATGAACCCAAT 57.254 33.333 0.00 0.00 0.00 3.16
28 29 6.523840 TCCAAAGAGAAAAATGAACCCAATG 58.476 36.000 0.00 0.00 0.00 2.82
29 30 6.326064 TCCAAAGAGAAAAATGAACCCAATGA 59.674 34.615 0.00 0.00 0.00 2.57
30 31 6.991531 CCAAAGAGAAAAATGAACCCAATGAA 59.008 34.615 0.00 0.00 0.00 2.57
31 32 7.662669 CCAAAGAGAAAAATGAACCCAATGAAT 59.337 33.333 0.00 0.00 0.00 2.57
32 33 8.500773 CAAAGAGAAAAATGAACCCAATGAATG 58.499 33.333 0.00 0.00 0.00 2.67
34 35 7.965718 AGAGAAAAATGAACCCAATGAATGAA 58.034 30.769 0.00 0.00 0.00 2.57
35 36 8.431222 AGAGAAAAATGAACCCAATGAATGAAA 58.569 29.630 0.00 0.00 0.00 2.69
36 37 8.977267 AGAAAAATGAACCCAATGAATGAAAA 57.023 26.923 0.00 0.00 0.00 2.29
37 38 9.406113 AGAAAAATGAACCCAATGAATGAAAAA 57.594 25.926 0.00 0.00 0.00 1.94
64 65 9.809096 AGATGAAGAAAAAGAAAGGAAGAAAAC 57.191 29.630 0.00 0.00 0.00 2.43
66 67 7.327975 TGAAGAAAAAGAAAGGAAGAAAACCC 58.672 34.615 0.00 0.00 0.00 4.11
67 68 7.180229 TGAAGAAAAAGAAAGGAAGAAAACCCT 59.820 33.333 0.00 0.00 0.00 4.34
68 69 8.603898 AAGAAAAAGAAAGGAAGAAAACCCTA 57.396 30.769 0.00 0.00 31.36 3.53
69 70 8.603898 AGAAAAAGAAAGGAAGAAAACCCTAA 57.396 30.769 0.00 0.00 31.36 2.69
70 71 9.042450 AGAAAAAGAAAGGAAGAAAACCCTAAA 57.958 29.630 0.00 0.00 31.36 1.85
71 72 9.661563 GAAAAAGAAAGGAAGAAAACCCTAAAA 57.338 29.630 0.00 0.00 31.36 1.52
77 78 9.204570 GAAAGGAAGAAAACCCTAAAAATAAGC 57.795 33.333 0.00 0.00 31.36 3.09
78 79 7.241042 AGGAAGAAAACCCTAAAAATAAGCC 57.759 36.000 0.00 0.00 0.00 4.35
79 80 6.785466 AGGAAGAAAACCCTAAAAATAAGCCA 59.215 34.615 0.00 0.00 0.00 4.75
80 81 7.291416 AGGAAGAAAACCCTAAAAATAAGCCAA 59.709 33.333 0.00 0.00 0.00 4.52
81 82 7.934665 GGAAGAAAACCCTAAAAATAAGCCAAA 59.065 33.333 0.00 0.00 0.00 3.28
82 83 9.332502 GAAGAAAACCCTAAAAATAAGCCAAAA 57.667 29.630 0.00 0.00 0.00 2.44
83 84 8.671384 AGAAAACCCTAAAAATAAGCCAAAAC 57.329 30.769 0.00 0.00 0.00 2.43
84 85 7.717875 AGAAAACCCTAAAAATAAGCCAAAACC 59.282 33.333 0.00 0.00 0.00 3.27
85 86 6.502074 AACCCTAAAAATAAGCCAAAACCA 57.498 33.333 0.00 0.00 0.00 3.67
86 87 6.109156 ACCCTAAAAATAAGCCAAAACCAG 57.891 37.500 0.00 0.00 0.00 4.00
87 88 5.841783 ACCCTAAAAATAAGCCAAAACCAGA 59.158 36.000 0.00 0.00 0.00 3.86
88 89 6.327887 ACCCTAAAAATAAGCCAAAACCAGAA 59.672 34.615 0.00 0.00 0.00 3.02
89 90 7.147461 ACCCTAAAAATAAGCCAAAACCAGAAA 60.147 33.333 0.00 0.00 0.00 2.52
90 91 7.172532 CCCTAAAAATAAGCCAAAACCAGAAAC 59.827 37.037 0.00 0.00 0.00 2.78
91 92 7.713073 CCTAAAAATAAGCCAAAACCAGAAACA 59.287 33.333 0.00 0.00 0.00 2.83
92 93 7.929941 AAAAATAAGCCAAAACCAGAAACAA 57.070 28.000 0.00 0.00 0.00 2.83
93 94 7.929941 AAAATAAGCCAAAACCAGAAACAAA 57.070 28.000 0.00 0.00 0.00 2.83
94 95 7.929941 AAATAAGCCAAAACCAGAAACAAAA 57.070 28.000 0.00 0.00 0.00 2.44
95 96 8.518430 AAATAAGCCAAAACCAGAAACAAAAT 57.482 26.923 0.00 0.00 0.00 1.82
96 97 9.620259 AAATAAGCCAAAACCAGAAACAAAATA 57.380 25.926 0.00 0.00 0.00 1.40
97 98 9.620259 AATAAGCCAAAACCAGAAACAAAATAA 57.380 25.926 0.00 0.00 0.00 1.40
98 99 7.929941 AAGCCAAAACCAGAAACAAAATAAA 57.070 28.000 0.00 0.00 0.00 1.40
99 100 7.552458 AGCCAAAACCAGAAACAAAATAAAG 57.448 32.000 0.00 0.00 0.00 1.85
100 101 6.038161 AGCCAAAACCAGAAACAAAATAAAGC 59.962 34.615 0.00 0.00 0.00 3.51
101 102 6.183360 GCCAAAACCAGAAACAAAATAAAGCA 60.183 34.615 0.00 0.00 0.00 3.91
102 103 7.468494 GCCAAAACCAGAAACAAAATAAAGCAT 60.468 33.333 0.00 0.00 0.00 3.79
103 104 9.050601 CCAAAACCAGAAACAAAATAAAGCATA 57.949 29.630 0.00 0.00 0.00 3.14
140 141 1.187087 AAAAACCTGGGCAACGAACA 58.813 45.000 0.00 0.00 37.60 3.18
141 142 0.744281 AAAACCTGGGCAACGAACAG 59.256 50.000 0.00 0.00 37.60 3.16
142 143 1.734388 AAACCTGGGCAACGAACAGC 61.734 55.000 0.00 0.00 37.60 4.40
147 148 3.423154 GGCAACGAACAGCCCGAG 61.423 66.667 0.00 0.00 45.18 4.63
148 149 4.090057 GCAACGAACAGCCCGAGC 62.090 66.667 0.00 0.00 40.32 5.03
149 150 2.664851 CAACGAACAGCCCGAGCA 60.665 61.111 0.00 0.00 43.56 4.26
150 151 2.665185 AACGAACAGCCCGAGCAC 60.665 61.111 0.00 0.00 43.56 4.40
153 154 2.260434 GAACAGCCCGAGCACGTA 59.740 61.111 2.18 0.00 43.56 3.57
154 155 1.805945 GAACAGCCCGAGCACGTAG 60.806 63.158 2.18 0.00 43.56 3.51
155 156 3.296709 AACAGCCCGAGCACGTAGG 62.297 63.158 2.18 0.00 43.56 3.18
159 160 4.124351 CCCGAGCACGTAGGCGAA 62.124 66.667 2.18 0.00 42.00 4.70
160 161 2.126228 CCGAGCACGTAGGCGAAA 60.126 61.111 2.18 0.00 42.00 3.46
161 162 2.442188 CCGAGCACGTAGGCGAAAC 61.442 63.158 2.18 0.00 42.00 2.78
162 163 2.774951 CGAGCACGTAGGCGAAACG 61.775 63.158 8.22 8.22 45.64 3.60
163 164 1.443194 GAGCACGTAGGCGAAACGA 60.443 57.895 15.13 0.00 42.90 3.85
164 165 1.005294 GAGCACGTAGGCGAAACGAA 61.005 55.000 15.13 0.00 42.90 3.85
165 166 0.598158 AGCACGTAGGCGAAACGAAA 60.598 50.000 15.13 0.00 42.90 3.46
166 167 0.232816 GCACGTAGGCGAAACGAAAA 59.767 50.000 15.13 0.00 42.90 2.29
167 168 1.333081 GCACGTAGGCGAAACGAAAAA 60.333 47.619 15.13 0.00 42.90 1.94
185 186 2.153366 AAAATTGCAAGCCTCGTTGG 57.847 45.000 4.94 0.00 39.35 3.77
186 187 0.318120 AAATTGCAAGCCTCGTTGGG 59.682 50.000 4.94 0.00 36.00 4.12
204 205 3.977244 CCCAACTGCCGGCACAAC 61.977 66.667 29.03 0.00 0.00 3.32
205 206 4.326766 CCAACTGCCGGCACAACG 62.327 66.667 29.03 19.20 0.00 4.10
206 207 3.582120 CAACTGCCGGCACAACGT 61.582 61.111 29.03 19.98 0.00 3.99
207 208 3.582120 AACTGCCGGCACAACGTG 61.582 61.111 29.03 17.92 36.51 4.49
208 209 4.849310 ACTGCCGGCACAACGTGT 62.849 61.111 29.03 18.70 35.75 4.49
209 210 4.012895 CTGCCGGCACAACGTGTC 62.013 66.667 29.03 0.00 35.75 3.67
214 215 3.712881 GGCACAACGTGTCCGAGC 61.713 66.667 0.00 0.00 35.75 5.03
215 216 2.661866 GCACAACGTGTCCGAGCT 60.662 61.111 0.00 0.00 35.75 4.09
216 217 1.372499 GCACAACGTGTCCGAGCTA 60.372 57.895 0.00 0.00 35.75 3.32
217 218 1.344942 GCACAACGTGTCCGAGCTAG 61.345 60.000 0.00 0.00 35.75 3.42
218 219 0.039437 CACAACGTGTCCGAGCTAGT 60.039 55.000 0.00 0.00 37.88 2.57
219 220 1.198408 CACAACGTGTCCGAGCTAGTA 59.802 52.381 0.00 0.00 37.88 1.82
220 221 2.089980 ACAACGTGTCCGAGCTAGTAT 58.910 47.619 0.00 0.00 37.88 2.12
221 222 2.490903 ACAACGTGTCCGAGCTAGTATT 59.509 45.455 0.00 0.00 37.88 1.89
222 223 3.691118 ACAACGTGTCCGAGCTAGTATTA 59.309 43.478 0.00 0.00 37.88 0.98
223 224 4.156556 ACAACGTGTCCGAGCTAGTATTAA 59.843 41.667 0.00 0.00 37.88 1.40
224 225 4.548991 ACGTGTCCGAGCTAGTATTAAG 57.451 45.455 0.00 0.00 37.88 1.85
225 226 3.314635 ACGTGTCCGAGCTAGTATTAAGG 59.685 47.826 0.00 0.00 37.88 2.69
226 227 3.562973 CGTGTCCGAGCTAGTATTAAGGA 59.437 47.826 0.00 0.00 35.63 3.36
227 228 4.319622 CGTGTCCGAGCTAGTATTAAGGAG 60.320 50.000 0.00 0.00 35.63 3.69
228 229 4.579753 GTGTCCGAGCTAGTATTAAGGAGT 59.420 45.833 0.00 0.00 0.00 3.85
229 230 5.067544 GTGTCCGAGCTAGTATTAAGGAGTT 59.932 44.000 0.00 0.00 0.00 3.01
230 231 5.298777 TGTCCGAGCTAGTATTAAGGAGTTC 59.701 44.000 0.00 0.00 0.00 3.01
231 232 4.826183 TCCGAGCTAGTATTAAGGAGTTCC 59.174 45.833 0.00 0.00 0.00 3.62
232 233 4.022155 CCGAGCTAGTATTAAGGAGTTCCC 60.022 50.000 0.00 0.00 36.42 3.97
233 234 4.320348 CGAGCTAGTATTAAGGAGTTCCCG 60.320 50.000 0.00 0.00 40.87 5.14
234 235 3.321396 AGCTAGTATTAAGGAGTTCCCGC 59.679 47.826 0.00 0.00 40.87 6.13
235 236 3.069158 GCTAGTATTAAGGAGTTCCCGCA 59.931 47.826 0.00 0.00 40.87 5.69
236 237 4.262506 GCTAGTATTAAGGAGTTCCCGCAT 60.263 45.833 0.00 0.00 40.87 4.73
237 238 4.073293 AGTATTAAGGAGTTCCCGCATG 57.927 45.455 0.00 0.00 40.87 4.06
238 239 3.454812 AGTATTAAGGAGTTCCCGCATGT 59.545 43.478 0.00 0.00 40.87 3.21
239 240 4.652421 AGTATTAAGGAGTTCCCGCATGTA 59.348 41.667 0.00 0.00 40.87 2.29
240 241 2.973694 TAAGGAGTTCCCGCATGTAC 57.026 50.000 0.00 0.00 40.87 2.90
241 242 1.276622 AAGGAGTTCCCGCATGTACT 58.723 50.000 0.00 0.00 40.87 2.73
242 243 0.824759 AGGAGTTCCCGCATGTACTC 59.175 55.000 0.00 0.00 40.87 2.59
243 244 0.824759 GGAGTTCCCGCATGTACTCT 59.175 55.000 8.48 0.00 37.68 3.24
244 245 2.029623 GGAGTTCCCGCATGTACTCTA 58.970 52.381 8.48 0.00 37.68 2.43
245 246 2.034812 GGAGTTCCCGCATGTACTCTAG 59.965 54.545 8.48 0.00 37.68 2.43
246 247 1.409427 AGTTCCCGCATGTACTCTAGC 59.591 52.381 0.00 0.00 0.00 3.42
247 248 0.750850 TTCCCGCATGTACTCTAGCC 59.249 55.000 0.00 0.00 0.00 3.93
248 249 1.113517 TCCCGCATGTACTCTAGCCC 61.114 60.000 0.00 0.00 0.00 5.19
249 250 1.007271 CCGCATGTACTCTAGCCCG 60.007 63.158 0.00 0.00 0.00 6.13
250 251 1.452953 CCGCATGTACTCTAGCCCGA 61.453 60.000 0.00 0.00 0.00 5.14
251 252 0.039978 CGCATGTACTCTAGCCCGAG 60.040 60.000 0.00 0.00 37.07 4.63
252 253 0.319125 GCATGTACTCTAGCCCGAGC 60.319 60.000 0.00 0.00 40.32 5.03
253 254 0.039978 CATGTACTCTAGCCCGAGCG 60.040 60.000 0.00 0.00 46.67 5.03
254 255 0.465824 ATGTACTCTAGCCCGAGCGT 60.466 55.000 0.00 0.00 46.67 5.07
255 256 0.679002 TGTACTCTAGCCCGAGCGTT 60.679 55.000 0.00 0.00 46.67 4.84
256 257 0.248539 GTACTCTAGCCCGAGCGTTG 60.249 60.000 0.10 0.00 46.67 4.10
257 258 2.001361 TACTCTAGCCCGAGCGTTGC 62.001 60.000 0.10 0.00 46.67 4.17
258 259 3.068691 TCTAGCCCGAGCGTTGCT 61.069 61.111 8.74 8.74 46.67 3.91
259 260 2.887568 CTAGCCCGAGCGTTGCTG 60.888 66.667 12.47 2.33 46.67 4.41
260 261 3.649277 CTAGCCCGAGCGTTGCTGT 62.649 63.158 12.47 0.00 46.67 4.40
261 262 3.932580 TAGCCCGAGCGTTGCTGTG 62.933 63.158 12.47 0.00 46.67 3.66
266 267 4.374702 GAGCGTTGCTGTGGCGTG 62.375 66.667 0.00 0.00 39.88 5.34
269 270 4.312231 CGTTGCTGTGGCGTGGTG 62.312 66.667 0.00 0.00 42.25 4.17
270 271 3.964875 GTTGCTGTGGCGTGGTGG 61.965 66.667 0.00 0.00 42.25 4.61
273 274 4.697756 GCTGTGGCGTGGTGGCTA 62.698 66.667 0.00 0.00 45.14 3.93
274 275 2.434884 CTGTGGCGTGGTGGCTAG 60.435 66.667 0.00 0.00 45.14 3.42
275 276 4.697756 TGTGGCGTGGTGGCTAGC 62.698 66.667 6.04 6.04 45.14 3.42
288 289 4.135153 CTAGCGCGGGCAGTCTGT 62.135 66.667 27.20 7.07 43.41 3.41
289 290 4.435436 TAGCGCGGGCAGTCTGTG 62.435 66.667 27.20 0.00 43.41 3.66
292 293 3.414700 CGCGGGCAGTCTGTGAAC 61.415 66.667 0.00 0.00 34.25 3.18
293 294 3.414700 GCGGGCAGTCTGTGAACG 61.415 66.667 0.93 2.90 0.00 3.95
294 295 2.738521 CGGGCAGTCTGTGAACGG 60.739 66.667 0.93 0.00 0.00 4.44
295 296 2.358737 GGGCAGTCTGTGAACGGG 60.359 66.667 0.93 0.00 0.00 5.28
296 297 2.741092 GGCAGTCTGTGAACGGGA 59.259 61.111 0.93 0.00 0.00 5.14
297 298 1.374758 GGCAGTCTGTGAACGGGAG 60.375 63.158 0.93 0.00 0.00 4.30
298 299 1.374758 GCAGTCTGTGAACGGGAGG 60.375 63.158 0.93 0.00 0.00 4.30
299 300 2.050269 CAGTCTGTGAACGGGAGGT 58.950 57.895 0.00 0.00 0.00 3.85
306 307 3.692406 GAACGGGAGGTCGCAGGT 61.692 66.667 0.00 0.00 36.50 4.00
307 308 3.236003 GAACGGGAGGTCGCAGGTT 62.236 63.158 0.00 0.00 36.50 3.50
308 309 2.726822 GAACGGGAGGTCGCAGGTTT 62.727 60.000 0.00 0.00 36.50 3.27
309 310 2.742372 CGGGAGGTCGCAGGTTTG 60.742 66.667 0.00 0.00 0.00 2.93
310 311 2.747686 GGGAGGTCGCAGGTTTGA 59.252 61.111 0.00 0.00 0.00 2.69
311 312 1.072505 GGGAGGTCGCAGGTTTGAA 59.927 57.895 0.00 0.00 0.00 2.69
312 313 0.322546 GGGAGGTCGCAGGTTTGAAT 60.323 55.000 0.00 0.00 0.00 2.57
313 314 1.087501 GGAGGTCGCAGGTTTGAATC 58.912 55.000 0.00 0.00 0.00 2.52
314 315 1.087501 GAGGTCGCAGGTTTGAATCC 58.912 55.000 0.00 0.00 0.00 3.01
315 316 0.400213 AGGTCGCAGGTTTGAATCCA 59.600 50.000 0.00 0.00 0.00 3.41
316 317 0.804989 GGTCGCAGGTTTGAATCCAG 59.195 55.000 0.00 0.00 0.00 3.86
317 318 0.169009 GTCGCAGGTTTGAATCCAGC 59.831 55.000 0.10 0.10 34.78 4.85
318 319 0.036732 TCGCAGGTTTGAATCCAGCT 59.963 50.000 7.85 0.00 35.74 4.24
319 320 0.169672 CGCAGGTTTGAATCCAGCTG 59.830 55.000 6.78 6.78 40.76 4.24
320 321 0.529378 GCAGGTTTGAATCCAGCTGG 59.471 55.000 27.87 27.87 38.67 4.85
321 322 0.529378 CAGGTTTGAATCCAGCTGGC 59.471 55.000 28.91 14.89 35.31 4.85
322 323 0.962356 AGGTTTGAATCCAGCTGGCG 60.962 55.000 28.91 5.66 34.44 5.69
323 324 0.960364 GGTTTGAATCCAGCTGGCGA 60.960 55.000 28.91 12.78 34.44 5.54
324 325 0.449388 GTTTGAATCCAGCTGGCGAG 59.551 55.000 28.91 4.40 34.44 5.03
325 326 1.308069 TTTGAATCCAGCTGGCGAGC 61.308 55.000 28.91 13.51 46.64 5.03
360 361 4.101448 GGGCACCGCTGGTCAGAT 62.101 66.667 1.65 0.00 40.86 2.90
361 362 2.821366 GGCACCGCTGGTCAGATG 60.821 66.667 1.65 0.00 31.02 2.90
362 363 3.503363 GCACCGCTGGTCAGATGC 61.503 66.667 1.65 4.65 31.02 3.91
363 364 2.046988 CACCGCTGGTCAGATGCA 60.047 61.111 1.65 0.00 31.02 3.96
364 365 2.046892 ACCGCTGGTCAGATGCAC 60.047 61.111 1.65 0.00 0.00 4.57
365 366 2.821366 CCGCTGGTCAGATGCACC 60.821 66.667 1.65 0.00 0.00 5.01
366 367 3.190849 CGCTGGTCAGATGCACCG 61.191 66.667 1.65 0.00 36.61 4.94
367 368 2.046892 GCTGGTCAGATGCACCGT 60.047 61.111 1.65 0.00 36.61 4.83
368 369 2.103042 GCTGGTCAGATGCACCGTC 61.103 63.158 1.65 0.00 36.61 4.79
369 370 1.293179 CTGGTCAGATGCACCGTCA 59.707 57.895 0.00 0.00 36.61 4.35
370 371 0.320683 CTGGTCAGATGCACCGTCAA 60.321 55.000 0.00 0.00 36.61 3.18
371 372 0.324614 TGGTCAGATGCACCGTCAAT 59.675 50.000 0.00 0.00 36.61 2.57
372 373 1.552792 TGGTCAGATGCACCGTCAATA 59.447 47.619 0.00 0.00 36.61 1.90
373 374 1.933853 GGTCAGATGCACCGTCAATAC 59.066 52.381 0.00 0.00 0.00 1.89
374 375 2.616960 GTCAGATGCACCGTCAATACA 58.383 47.619 0.00 0.00 0.00 2.29
375 376 2.348666 GTCAGATGCACCGTCAATACAC 59.651 50.000 0.00 0.00 0.00 2.90
376 377 1.324435 CAGATGCACCGTCAATACACG 59.676 52.381 0.00 0.00 39.61 4.49
377 378 1.067142 AGATGCACCGTCAATACACGT 60.067 47.619 0.00 0.00 38.14 4.49
378 379 1.730064 GATGCACCGTCAATACACGTT 59.270 47.619 0.00 0.00 38.14 3.99
379 380 1.584175 TGCACCGTCAATACACGTTT 58.416 45.000 0.00 0.00 38.14 3.60
380 381 2.752121 TGCACCGTCAATACACGTTTA 58.248 42.857 0.00 0.00 38.14 2.01
381 382 3.327626 TGCACCGTCAATACACGTTTAT 58.672 40.909 0.00 0.00 38.14 1.40
382 383 4.492611 TGCACCGTCAATACACGTTTATA 58.507 39.130 0.00 0.00 38.14 0.98
383 384 5.110598 TGCACCGTCAATACACGTTTATAT 58.889 37.500 0.00 0.00 38.14 0.86
384 385 5.005875 TGCACCGTCAATACACGTTTATATG 59.994 40.000 0.00 0.00 38.14 1.78
385 386 5.428770 CACCGTCAATACACGTTTATATGC 58.571 41.667 0.00 0.00 38.14 3.14
386 387 4.207635 ACCGTCAATACACGTTTATATGCG 59.792 41.667 0.00 0.75 38.14 4.73
387 388 4.375606 CCGTCAATACACGTTTATATGCGG 60.376 45.833 12.79 12.79 38.14 5.69
388 389 4.207635 CGTCAATACACGTTTATATGCGGT 59.792 41.667 0.00 0.00 34.95 5.68
389 390 5.276489 CGTCAATACACGTTTATATGCGGTT 60.276 40.000 0.00 0.00 34.95 4.44
390 391 6.480285 GTCAATACACGTTTATATGCGGTTT 58.520 36.000 0.00 0.00 0.00 3.27
391 392 7.514903 CGTCAATACACGTTTATATGCGGTTTA 60.515 37.037 0.00 0.00 34.95 2.01
392 393 7.790673 GTCAATACACGTTTATATGCGGTTTAG 59.209 37.037 0.00 0.00 0.00 1.85
393 394 7.705752 TCAATACACGTTTATATGCGGTTTAGA 59.294 33.333 0.00 0.00 0.00 2.10
394 395 5.707411 ACACGTTTATATGCGGTTTAGAC 57.293 39.130 0.00 0.00 0.00 2.59
395 396 4.567959 ACACGTTTATATGCGGTTTAGACC 59.432 41.667 0.00 0.00 42.87 3.85
396 397 4.567558 CACGTTTATATGCGGTTTAGACCA 59.432 41.667 2.97 0.00 46.91 4.02
397 398 5.235616 CACGTTTATATGCGGTTTAGACCAT 59.764 40.000 2.97 0.00 46.91 3.55
398 399 5.818857 ACGTTTATATGCGGTTTAGACCATT 59.181 36.000 2.97 0.00 46.91 3.16
399 400 6.316890 ACGTTTATATGCGGTTTAGACCATTT 59.683 34.615 2.97 0.00 46.91 2.32
400 401 7.148205 ACGTTTATATGCGGTTTAGACCATTTT 60.148 33.333 2.97 0.00 46.91 1.82
401 402 7.165154 CGTTTATATGCGGTTTAGACCATTTTG 59.835 37.037 2.97 0.00 46.91 2.44
402 403 7.633193 TTATATGCGGTTTAGACCATTTTGT 57.367 32.000 2.97 0.00 46.91 2.83
403 404 8.734218 TTATATGCGGTTTAGACCATTTTGTA 57.266 30.769 2.97 0.00 46.91 2.41
404 405 5.968528 ATGCGGTTTAGACCATTTTGTAA 57.031 34.783 2.97 0.00 46.91 2.41
405 406 5.110940 TGCGGTTTAGACCATTTTGTAAC 57.889 39.130 2.97 0.00 46.91 2.50
406 407 4.153256 GCGGTTTAGACCATTTTGTAACG 58.847 43.478 2.97 0.00 46.91 3.18
407 408 4.714851 CGGTTTAGACCATTTTGTAACGG 58.285 43.478 2.97 0.00 46.91 4.44
408 409 4.478699 GGTTTAGACCATTTTGTAACGGC 58.521 43.478 0.00 0.00 45.77 5.68
409 410 4.216902 GGTTTAGACCATTTTGTAACGGCT 59.783 41.667 0.00 0.00 45.77 5.52
410 411 5.412286 GGTTTAGACCATTTTGTAACGGCTA 59.588 40.000 0.00 0.00 45.77 3.93
411 412 6.402875 GGTTTAGACCATTTTGTAACGGCTAG 60.403 42.308 0.00 0.00 45.77 3.42
412 413 3.007635 AGACCATTTTGTAACGGCTAGC 58.992 45.455 6.04 6.04 0.00 3.42
413 414 2.089201 ACCATTTTGTAACGGCTAGCC 58.911 47.619 24.75 24.75 0.00 3.93
414 415 1.404035 CCATTTTGTAACGGCTAGCCC 59.596 52.381 28.09 14.28 0.00 5.19
415 416 2.088423 CATTTTGTAACGGCTAGCCCA 58.912 47.619 28.09 16.86 0.00 5.36
416 417 1.816074 TTTTGTAACGGCTAGCCCAG 58.184 50.000 28.09 17.25 0.00 4.45
428 429 3.037431 CTAGCCCAGCATGATACTGAC 57.963 52.381 0.00 0.00 39.69 3.51
429 430 1.206878 AGCCCAGCATGATACTGACA 58.793 50.000 0.00 0.00 39.69 3.58
430 431 1.773052 AGCCCAGCATGATACTGACAT 59.227 47.619 0.00 0.00 39.69 3.06
431 432 1.878088 GCCCAGCATGATACTGACATG 59.122 52.381 0.00 0.00 45.19 3.21
432 433 2.747467 GCCCAGCATGATACTGACATGT 60.747 50.000 0.00 0.00 44.52 3.21
433 434 2.876550 CCCAGCATGATACTGACATGTG 59.123 50.000 1.15 0.00 44.52 3.21
434 435 3.432608 CCCAGCATGATACTGACATGTGA 60.433 47.826 1.15 0.00 44.52 3.58
435 436 4.386711 CCAGCATGATACTGACATGTGAT 58.613 43.478 1.15 0.00 44.52 3.06
436 437 5.511888 CCCAGCATGATACTGACATGTGATA 60.512 44.000 1.15 0.00 44.52 2.15
437 438 6.171213 CCAGCATGATACTGACATGTGATAT 58.829 40.000 1.15 0.00 44.52 1.63
438 439 6.092259 CCAGCATGATACTGACATGTGATATG 59.908 42.308 1.15 0.00 44.52 1.78
439 440 6.872020 CAGCATGATACTGACATGTGATATGA 59.128 38.462 1.15 0.00 44.52 2.15
440 441 7.386848 CAGCATGATACTGACATGTGATATGAA 59.613 37.037 1.15 0.00 44.52 2.57
441 442 7.935210 AGCATGATACTGACATGTGATATGAAA 59.065 33.333 1.15 0.00 44.52 2.69
442 443 8.562052 GCATGATACTGACATGTGATATGAAAA 58.438 33.333 1.15 0.00 44.52 2.29
446 447 9.888878 GATACTGACATGTGATATGAAAAATGG 57.111 33.333 1.15 0.00 0.00 3.16
447 448 7.707624 ACTGACATGTGATATGAAAAATGGT 57.292 32.000 1.15 0.00 0.00 3.55
448 449 8.806429 ACTGACATGTGATATGAAAAATGGTA 57.194 30.769 1.15 0.00 0.00 3.25
449 450 8.677300 ACTGACATGTGATATGAAAAATGGTAC 58.323 33.333 1.15 0.00 0.00 3.34
450 451 7.995289 TGACATGTGATATGAAAAATGGTACC 58.005 34.615 1.15 4.43 0.00 3.34
451 452 7.613411 TGACATGTGATATGAAAAATGGTACCA 59.387 33.333 18.99 18.99 0.00 3.25
452 453 8.359875 ACATGTGATATGAAAAATGGTACCAA 57.640 30.769 20.76 0.45 0.00 3.67
453 454 8.980596 ACATGTGATATGAAAAATGGTACCAAT 58.019 29.630 20.76 7.92 0.00 3.16
454 455 9.820725 CATGTGATATGAAAAATGGTACCAATT 57.179 29.630 20.76 14.84 0.00 2.32
457 458 9.463443 GTGATATGAAAAATGGTACCAATTAGC 57.537 33.333 20.76 12.54 0.00 3.09
458 459 9.194972 TGATATGAAAAATGGTACCAATTAGCA 57.805 29.630 20.76 17.54 42.37 3.49
459 460 9.463443 GATATGAAAAATGGTACCAATTAGCAC 57.537 33.333 20.76 9.51 40.99 4.40
460 461 5.704888 TGAAAAATGGTACCAATTAGCACG 58.295 37.500 20.76 0.00 40.99 5.34
461 462 5.241949 TGAAAAATGGTACCAATTAGCACGT 59.758 36.000 20.76 0.00 40.99 4.49
462 463 6.430308 TGAAAAATGGTACCAATTAGCACGTA 59.570 34.615 20.76 0.00 40.99 3.57
463 464 5.806366 AAATGGTACCAATTAGCACGTAC 57.194 39.130 20.76 0.00 40.99 3.67
464 465 4.748277 ATGGTACCAATTAGCACGTACT 57.252 40.909 20.76 0.00 40.99 2.73
465 466 3.852286 TGGTACCAATTAGCACGTACTG 58.148 45.455 13.60 0.00 33.09 2.74
475 476 1.734163 GCACGTACTGCCCTAATTGT 58.266 50.000 6.14 0.00 40.42 2.71
476 477 1.396996 GCACGTACTGCCCTAATTGTG 59.603 52.381 6.14 0.00 40.42 3.33
477 478 2.933492 GCACGTACTGCCCTAATTGTGA 60.933 50.000 6.14 0.00 40.42 3.58
478 479 3.531538 CACGTACTGCCCTAATTGTGAT 58.468 45.455 0.00 0.00 0.00 3.06
479 480 4.689071 CACGTACTGCCCTAATTGTGATA 58.311 43.478 0.00 0.00 0.00 2.15
480 481 4.506654 CACGTACTGCCCTAATTGTGATAC 59.493 45.833 0.00 0.00 0.00 2.24
481 482 4.056050 CGTACTGCCCTAATTGTGATACC 58.944 47.826 0.00 0.00 0.00 2.73
482 483 4.202223 CGTACTGCCCTAATTGTGATACCT 60.202 45.833 0.00 0.00 0.00 3.08
483 484 4.423625 ACTGCCCTAATTGTGATACCTC 57.576 45.455 0.00 0.00 0.00 3.85
484 485 3.136626 ACTGCCCTAATTGTGATACCTCC 59.863 47.826 0.00 0.00 0.00 4.30
485 486 2.104111 TGCCCTAATTGTGATACCTCCG 59.896 50.000 0.00 0.00 0.00 4.63
486 487 2.104281 GCCCTAATTGTGATACCTCCGT 59.896 50.000 0.00 0.00 0.00 4.69
487 488 3.728845 CCCTAATTGTGATACCTCCGTG 58.271 50.000 0.00 0.00 0.00 4.94
488 489 3.134081 CCCTAATTGTGATACCTCCGTGT 59.866 47.826 0.00 0.00 0.00 4.49
489 490 4.342951 CCCTAATTGTGATACCTCCGTGTA 59.657 45.833 0.00 0.00 0.00 2.90
490 491 5.509163 CCCTAATTGTGATACCTCCGTGTAG 60.509 48.000 0.00 0.00 0.00 2.74
491 492 5.068723 CCTAATTGTGATACCTCCGTGTAGT 59.931 44.000 0.00 0.00 0.00 2.73
492 493 5.416271 AATTGTGATACCTCCGTGTAGTT 57.584 39.130 0.00 0.00 0.00 2.24
493 494 6.534475 AATTGTGATACCTCCGTGTAGTTA 57.466 37.500 0.00 0.00 0.00 2.24
494 495 5.981088 TTGTGATACCTCCGTGTAGTTAA 57.019 39.130 0.00 0.00 0.00 2.01
495 496 5.314923 TGTGATACCTCCGTGTAGTTAAC 57.685 43.478 0.00 0.00 0.00 2.01
496 497 5.012239 TGTGATACCTCCGTGTAGTTAACT 58.988 41.667 13.68 13.68 0.00 2.24
497 498 5.124457 TGTGATACCTCCGTGTAGTTAACTC 59.876 44.000 12.39 4.83 0.00 3.01
498 499 5.356470 GTGATACCTCCGTGTAGTTAACTCT 59.644 44.000 12.39 0.00 0.00 3.24
499 500 5.948162 TGATACCTCCGTGTAGTTAACTCTT 59.052 40.000 12.39 0.00 0.00 2.85
500 501 6.435277 TGATACCTCCGTGTAGTTAACTCTTT 59.565 38.462 12.39 0.00 0.00 2.52
501 502 5.541953 ACCTCCGTGTAGTTAACTCTTTT 57.458 39.130 12.39 0.00 0.00 2.27
502 503 5.295152 ACCTCCGTGTAGTTAACTCTTTTG 58.705 41.667 12.39 0.00 0.00 2.44
503 504 4.151867 CCTCCGTGTAGTTAACTCTTTTGC 59.848 45.833 12.39 0.00 0.00 3.68
504 505 4.060205 TCCGTGTAGTTAACTCTTTTGCC 58.940 43.478 12.39 0.00 0.00 4.52
505 506 3.120786 CCGTGTAGTTAACTCTTTTGCCG 60.121 47.826 12.39 6.15 0.00 5.69
506 507 3.663493 CGTGTAGTTAACTCTTTTGCCGC 60.663 47.826 12.39 0.00 0.00 6.53
507 508 3.249080 GTGTAGTTAACTCTTTTGCCGCA 59.751 43.478 12.39 0.00 0.00 5.69
508 509 3.496884 TGTAGTTAACTCTTTTGCCGCAG 59.503 43.478 12.39 0.00 0.00 5.18
509 510 2.846193 AGTTAACTCTTTTGCCGCAGA 58.154 42.857 1.12 0.00 0.00 4.26
510 511 2.808543 AGTTAACTCTTTTGCCGCAGAG 59.191 45.455 1.12 6.58 42.13 3.35
511 512 2.806244 GTTAACTCTTTTGCCGCAGAGA 59.194 45.455 13.48 10.59 39.21 3.10
512 513 1.517242 AACTCTTTTGCCGCAGAGAG 58.483 50.000 23.75 23.75 39.21 3.20
513 514 0.952984 ACTCTTTTGCCGCAGAGAGC 60.953 55.000 24.65 0.00 39.21 4.09
524 525 2.732412 GCAGAGAGCGGCATATAGAA 57.268 50.000 1.45 0.00 35.17 2.10
525 526 2.605030 GCAGAGAGCGGCATATAGAAG 58.395 52.381 1.45 0.00 35.17 2.85
526 527 2.673610 GCAGAGAGCGGCATATAGAAGG 60.674 54.545 1.45 0.00 35.17 3.46
527 528 1.548269 AGAGAGCGGCATATAGAAGGC 59.452 52.381 1.45 0.00 0.00 4.35
528 529 1.273606 GAGAGCGGCATATAGAAGGCA 59.726 52.381 1.45 0.00 0.00 4.75
529 530 1.001406 AGAGCGGCATATAGAAGGCAC 59.999 52.381 1.45 0.00 0.00 5.01
530 531 0.035458 AGCGGCATATAGAAGGCACC 59.965 55.000 1.45 0.00 0.00 5.01
531 532 1.291877 GCGGCATATAGAAGGCACCG 61.292 60.000 0.00 0.00 41.97 4.94
532 533 0.670546 CGGCATATAGAAGGCACCGG 60.671 60.000 0.00 0.00 35.63 5.28
533 534 0.955919 GGCATATAGAAGGCACCGGC 60.956 60.000 0.00 0.00 40.13 6.13
550 551 4.025401 CCTTGCACGCGGAACCAC 62.025 66.667 12.47 0.00 0.00 4.16
551 552 3.276091 CTTGCACGCGGAACCACA 61.276 61.111 12.47 0.00 0.00 4.17
552 553 3.521308 CTTGCACGCGGAACCACAC 62.521 63.158 12.47 0.00 0.00 3.82
555 556 3.698463 CACGCGGAACCACACGAC 61.698 66.667 12.47 0.00 0.00 4.34
556 557 4.955774 ACGCGGAACCACACGACC 62.956 66.667 12.47 0.00 0.00 4.79
558 559 4.612412 GCGGAACCACACGACCCA 62.612 66.667 0.00 0.00 0.00 4.51
559 560 2.357034 CGGAACCACACGACCCAG 60.357 66.667 0.00 0.00 0.00 4.45
560 561 2.826702 GGAACCACACGACCCAGT 59.173 61.111 0.00 0.00 0.00 4.00
561 562 1.597027 GGAACCACACGACCCAGTG 60.597 63.158 0.00 0.00 46.83 3.66
567 568 2.357517 CACGACCCAGTGTGCTCC 60.358 66.667 0.00 0.00 37.35 4.70
568 569 2.842462 ACGACCCAGTGTGCTCCA 60.842 61.111 0.00 0.00 0.00 3.86
569 570 2.425592 CGACCCAGTGTGCTCCAA 59.574 61.111 0.00 0.00 0.00 3.53
570 571 1.003355 CGACCCAGTGTGCTCCAAT 60.003 57.895 0.00 0.00 0.00 3.16
571 572 0.606401 CGACCCAGTGTGCTCCAATT 60.606 55.000 0.00 0.00 0.00 2.32
572 573 1.620822 GACCCAGTGTGCTCCAATTT 58.379 50.000 0.00 0.00 0.00 1.82
573 574 1.963515 GACCCAGTGTGCTCCAATTTT 59.036 47.619 0.00 0.00 0.00 1.82
574 575 1.963515 ACCCAGTGTGCTCCAATTTTC 59.036 47.619 0.00 0.00 0.00 2.29
575 576 2.242043 CCCAGTGTGCTCCAATTTTCT 58.758 47.619 0.00 0.00 0.00 2.52
576 577 2.229784 CCCAGTGTGCTCCAATTTTCTC 59.770 50.000 0.00 0.00 0.00 2.87
577 578 2.886523 CCAGTGTGCTCCAATTTTCTCA 59.113 45.455 0.00 0.00 0.00 3.27
578 579 3.057736 CCAGTGTGCTCCAATTTTCTCAG 60.058 47.826 0.00 0.00 0.00 3.35
579 580 3.057736 CAGTGTGCTCCAATTTTCTCAGG 60.058 47.826 0.00 0.00 0.00 3.86
580 581 1.888512 TGTGCTCCAATTTTCTCAGGC 59.111 47.619 0.00 0.00 0.00 4.85
581 582 1.203287 GTGCTCCAATTTTCTCAGGCC 59.797 52.381 0.00 0.00 0.00 5.19
582 583 0.453390 GCTCCAATTTTCTCAGGCCG 59.547 55.000 0.00 0.00 0.00 6.13
583 584 1.950484 GCTCCAATTTTCTCAGGCCGA 60.950 52.381 0.00 0.00 0.00 5.54
584 585 2.648059 CTCCAATTTTCTCAGGCCGAT 58.352 47.619 0.00 0.00 0.00 4.18
585 586 2.615912 CTCCAATTTTCTCAGGCCGATC 59.384 50.000 0.00 0.00 0.00 3.69
586 587 2.026356 TCCAATTTTCTCAGGCCGATCA 60.026 45.455 0.00 0.00 0.00 2.92
587 588 2.098117 CCAATTTTCTCAGGCCGATCAC 59.902 50.000 0.00 0.00 0.00 3.06
588 589 2.044123 ATTTTCTCAGGCCGATCACC 57.956 50.000 0.00 0.00 0.00 4.02
589 590 0.035439 TTTTCTCAGGCCGATCACCC 60.035 55.000 0.00 0.00 0.00 4.61
590 591 2.238847 TTTCTCAGGCCGATCACCCG 62.239 60.000 0.00 0.00 0.00 5.28
591 592 4.899239 CTCAGGCCGATCACCCGC 62.899 72.222 0.00 0.00 0.00 6.13
598 599 4.402528 CGATCACCCGCCAACCCA 62.403 66.667 0.00 0.00 0.00 4.51
599 600 2.275418 GATCACCCGCCAACCCAT 59.725 61.111 0.00 0.00 0.00 4.00
600 601 1.379843 GATCACCCGCCAACCCATT 60.380 57.895 0.00 0.00 0.00 3.16
601 602 1.379843 ATCACCCGCCAACCCATTC 60.380 57.895 0.00 0.00 0.00 2.67
602 603 3.439540 CACCCGCCAACCCATTCG 61.440 66.667 0.00 0.00 0.00 3.34
603 604 4.733542 ACCCGCCAACCCATTCGG 62.734 66.667 0.00 0.00 41.41 4.30
607 608 2.759560 GCCAACCCATTCGGCCAT 60.760 61.111 2.24 0.00 40.07 4.40
608 609 2.358372 GCCAACCCATTCGGCCATT 61.358 57.895 2.24 0.00 40.07 3.16
609 610 1.898330 GCCAACCCATTCGGCCATTT 61.898 55.000 2.24 0.00 40.07 2.32
610 611 0.108233 CCAACCCATTCGGCCATTTG 60.108 55.000 2.24 0.00 33.26 2.32
611 612 0.740516 CAACCCATTCGGCCATTTGC 60.741 55.000 2.24 0.00 40.16 3.68
612 613 1.190833 AACCCATTCGGCCATTTGCA 61.191 50.000 2.24 0.00 43.89 4.08
613 614 1.142314 CCCATTCGGCCATTTGCAG 59.858 57.895 2.24 0.00 43.89 4.41
614 615 1.519898 CCATTCGGCCATTTGCAGC 60.520 57.895 2.24 0.00 43.89 5.25
615 616 1.519898 CATTCGGCCATTTGCAGCC 60.520 57.895 2.24 4.64 46.17 4.85
619 620 2.749016 GGCCATTTGCAGCCCAAA 59.251 55.556 0.00 3.02 46.64 3.28
620 621 1.672030 GGCCATTTGCAGCCCAAAC 60.672 57.895 0.00 0.00 45.52 2.93
621 622 2.028733 GCCATTTGCAGCCCAAACG 61.029 57.895 2.62 0.00 45.52 3.60
622 623 1.664873 CCATTTGCAGCCCAAACGA 59.335 52.632 2.62 0.00 45.52 3.85
623 624 0.033228 CCATTTGCAGCCCAAACGAA 59.967 50.000 2.62 0.00 45.52 3.85
624 625 1.139163 CATTTGCAGCCCAAACGAAC 58.861 50.000 2.62 0.00 45.52 3.95
625 626 0.318614 ATTTGCAGCCCAAACGAACG 60.319 50.000 2.62 0.00 45.52 3.95
626 627 2.343163 TTTGCAGCCCAAACGAACGG 62.343 55.000 0.00 0.00 38.46 4.44
627 628 3.284449 GCAGCCCAAACGAACGGT 61.284 61.111 0.00 0.00 0.00 4.83
628 629 2.943653 CAGCCCAAACGAACGGTC 59.056 61.111 0.00 0.00 0.00 4.79
650 651 0.612732 ACGTGTAAGATGGACCCGGA 60.613 55.000 0.73 0.00 0.00 5.14
651 652 0.102481 CGTGTAAGATGGACCCGGAG 59.898 60.000 0.73 0.00 0.00 4.63
652 653 0.179081 GTGTAAGATGGACCCGGAGC 60.179 60.000 0.73 0.00 0.00 4.70
653 654 1.335132 TGTAAGATGGACCCGGAGCC 61.335 60.000 0.73 3.89 0.00 4.70
654 655 1.764854 TAAGATGGACCCGGAGCCC 60.765 63.158 0.73 0.58 0.00 5.19
655 656 2.539277 TAAGATGGACCCGGAGCCCA 62.539 60.000 0.73 7.54 0.00 5.36
656 657 3.171388 GATGGACCCGGAGCCCAT 61.171 66.667 18.11 18.11 42.89 4.00
657 658 3.171388 ATGGACCCGGAGCCCATC 61.171 66.667 0.73 0.00 35.95 3.51
682 683 4.804806 GGCCTACCGAAACCACAA 57.195 55.556 0.00 0.00 0.00 3.33
683 684 3.024431 GGCCTACCGAAACCACAAA 57.976 52.632 0.00 0.00 0.00 2.83
684 685 1.320507 GGCCTACCGAAACCACAAAA 58.679 50.000 0.00 0.00 0.00 2.44
685 686 1.682323 GGCCTACCGAAACCACAAAAA 59.318 47.619 0.00 0.00 0.00 1.94
704 705 4.900635 AAAATATTCAGGCCGATCACAC 57.099 40.909 0.00 0.00 0.00 3.82
705 706 2.154854 ATATTCAGGCCGATCACACG 57.845 50.000 0.00 0.00 0.00 4.49
706 707 0.529773 TATTCAGGCCGATCACACGC 60.530 55.000 0.00 0.00 0.00 5.34
707 708 3.824028 TATTCAGGCCGATCACACGCC 62.824 57.143 0.00 0.00 0.00 5.68
713 714 4.429212 CGATCACACGCCGACCCA 62.429 66.667 0.00 0.00 0.00 4.51
714 715 2.186903 GATCACACGCCGACCCAT 59.813 61.111 0.00 0.00 0.00 4.00
715 716 1.449601 GATCACACGCCGACCCATT 60.450 57.895 0.00 0.00 0.00 3.16
716 717 1.429148 GATCACACGCCGACCCATTC 61.429 60.000 0.00 0.00 0.00 2.67
724 725 3.918544 CGACCCATTCGGCCATTT 58.081 55.556 2.24 0.00 44.60 2.32
725 726 1.433064 CGACCCATTCGGCCATTTG 59.567 57.895 2.24 0.00 44.60 2.32
726 727 1.141665 GACCCATTCGGCCATTTGC 59.858 57.895 2.24 0.00 40.16 3.68
727 728 1.603236 GACCCATTCGGCCATTTGCA 61.603 55.000 2.24 0.00 43.89 4.08
728 729 1.142314 CCCATTCGGCCATTTGCAG 59.858 57.895 2.24 0.00 43.89 4.41
729 730 1.519898 CCATTCGGCCATTTGCAGC 60.520 57.895 2.24 0.00 43.89 5.25
730 731 1.519898 CATTCGGCCATTTGCAGCC 60.520 57.895 2.24 4.64 46.17 4.85
734 735 2.266689 GGCCATTTGCAGCCCAAG 59.733 61.111 0.00 0.00 43.76 3.61
735 736 2.435410 GCCATTTGCAGCCCAAGC 60.435 61.111 0.00 0.00 40.77 4.01
736 737 2.125832 CCATTTGCAGCCCAAGCG 60.126 61.111 0.00 0.00 46.67 4.68
737 738 2.652530 CATTTGCAGCCCAAGCGT 59.347 55.556 0.00 0.00 46.67 5.07
738 739 1.735198 CATTTGCAGCCCAAGCGTG 60.735 57.895 0.00 0.00 46.67 5.34
739 740 2.934570 ATTTGCAGCCCAAGCGTGG 61.935 57.895 12.27 12.27 46.67 4.94
756 757 4.937431 GGGGCGGGATGCTGCTAC 62.937 72.222 18.22 10.94 45.43 3.58
757 758 4.175337 GGGCGGGATGCTGCTACA 62.175 66.667 18.22 0.00 45.43 2.74
758 759 2.124736 GGCGGGATGCTGCTACAA 60.125 61.111 18.22 0.00 45.43 2.41
759 760 1.748879 GGCGGGATGCTGCTACAAA 60.749 57.895 18.22 0.00 45.43 2.83
760 761 1.312371 GGCGGGATGCTGCTACAAAA 61.312 55.000 18.22 0.00 45.43 2.44
761 762 0.099436 GCGGGATGCTGCTACAAAAG 59.901 55.000 11.31 0.00 41.73 2.27
762 763 0.734889 CGGGATGCTGCTACAAAAGG 59.265 55.000 0.00 0.00 0.00 3.11
763 764 1.839424 GGGATGCTGCTACAAAAGGT 58.161 50.000 0.00 0.00 0.00 3.50
764 765 1.474077 GGGATGCTGCTACAAAAGGTG 59.526 52.381 0.00 0.00 0.00 4.00
765 766 2.162681 GGATGCTGCTACAAAAGGTGT 58.837 47.619 0.00 0.00 44.82 4.16
766 767 3.343617 GGATGCTGCTACAAAAGGTGTA 58.656 45.455 0.00 0.00 41.98 2.90
767 768 3.756434 GGATGCTGCTACAAAAGGTGTAA 59.244 43.478 0.00 0.00 42.23 2.41
768 769 4.142600 GGATGCTGCTACAAAAGGTGTAAG 60.143 45.833 0.00 0.00 42.23 2.34
769 770 4.079980 TGCTGCTACAAAAGGTGTAAGA 57.920 40.909 0.00 0.00 42.23 2.10
770 771 4.651778 TGCTGCTACAAAAGGTGTAAGAT 58.348 39.130 0.00 0.00 42.23 2.40
771 772 4.455533 TGCTGCTACAAAAGGTGTAAGATG 59.544 41.667 0.00 0.00 42.23 2.90
772 773 4.695455 GCTGCTACAAAAGGTGTAAGATGA 59.305 41.667 0.00 0.00 42.23 2.92
773 774 5.181245 GCTGCTACAAAAGGTGTAAGATGAA 59.819 40.000 0.00 0.00 42.23 2.57
774 775 6.554334 TGCTACAAAAGGTGTAAGATGAAC 57.446 37.500 0.00 0.00 42.23 3.18
775 776 5.472137 TGCTACAAAAGGTGTAAGATGAACC 59.528 40.000 0.00 0.00 42.23 3.62
776 777 5.106277 GCTACAAAAGGTGTAAGATGAACCC 60.106 44.000 0.00 0.00 42.23 4.11
777 778 3.818773 ACAAAAGGTGTAAGATGAACCCG 59.181 43.478 0.00 0.00 39.29 5.28
778 779 3.782656 AAAGGTGTAAGATGAACCCGT 57.217 42.857 0.00 0.00 34.29 5.28
1101 1137 2.360852 TCCTCCCTGTCGTCGTCC 60.361 66.667 0.00 0.00 0.00 4.79
1320 1356 4.144703 GTCTTCCGCTCCGACCCC 62.145 72.222 0.00 0.00 0.00 4.95
1401 1437 4.719369 GTGTTCGACGAGGCGCCT 62.719 66.667 33.48 33.48 0.00 5.52
1770 1806 0.521291 TTGCGTGCTATGCCAAGAAC 59.479 50.000 0.00 0.00 0.00 3.01
2034 2070 1.116308 TCAATTGGATAGGACGCCGA 58.884 50.000 5.42 0.00 0.00 5.54
2134 2170 3.511146 TGAGGAAATGATTCAAGTTGGGC 59.489 43.478 2.34 0.00 37.29 5.36
2166 2202 8.916654 CCGAGTATCATAACATTTATCAGTGTC 58.083 37.037 0.00 0.00 33.17 3.67
2211 2247 2.716424 ACTTGTGGATGAGGGGAAGAAA 59.284 45.455 0.00 0.00 0.00 2.52
2277 2313 3.144506 GCACTATGCTTGCATGGTAGAT 58.855 45.455 20.90 0.00 40.96 1.98
2405 2441 0.815213 CATGGCCATGTGGAGTACGG 60.815 60.000 33.68 7.75 37.39 4.02
2730 2766 8.713737 TCATGTATGACATTGAAGAAGAAGAG 57.286 34.615 0.00 0.00 36.53 2.85
2886 2922 2.839486 TCTCCAAATTCACAGAGCGT 57.161 45.000 0.00 0.00 0.00 5.07
2977 3013 1.527034 GTGAAGATGCTGCCAAGTCA 58.473 50.000 0.00 0.00 0.00 3.41
3085 3121 2.398754 TGACCCAGTCTTTCAGGAGA 57.601 50.000 0.00 0.00 33.15 3.71
3210 3246 0.323725 ATGGTGTCCCTGGCACATTC 60.324 55.000 0.00 0.00 38.20 2.67
3219 3255 3.266772 TCCCTGGCACATTCTGAATTAGT 59.733 43.478 0.00 0.00 38.20 2.24
3260 3296 8.280258 TCCCACCTAATCTTCATAATCAAGAT 57.720 34.615 0.00 0.00 41.50 2.40
3339 3377 4.661125 TGTGATTTGACGCATAAATGAGC 58.339 39.130 0.00 0.00 0.00 4.26
3349 3387 2.527487 GCATAAATGAGCTTTCGTTGCG 59.473 45.455 0.00 0.00 35.28 4.85
3396 3434 8.816144 TGTTGAGATTGCTGTTTTTATTTGTTC 58.184 29.630 0.00 0.00 0.00 3.18
3423 3461 7.441890 TTTGGCAAGACTTATTTATCACGAA 57.558 32.000 0.00 0.00 0.00 3.85
3427 3465 6.260050 GGCAAGACTTATTTATCACGAATCCA 59.740 38.462 0.00 0.00 0.00 3.41
3530 3578 5.598830 AGACTTGTCAAGACTTCAGGAGTTA 59.401 40.000 19.53 0.00 39.19 2.24
3562 3610 1.484240 GTTCTATGCTCACAGAGGCCT 59.516 52.381 3.86 3.86 35.76 5.19
3574 3622 0.543749 AGAGGCCTGGCTATGTGAAC 59.456 55.000 12.00 0.00 0.00 3.18
3587 3635 5.419542 GCTATGTGAACCTATCTGTGTTGA 58.580 41.667 0.00 0.00 0.00 3.18
3594 3642 1.645034 CTATCTGTGTTGACCGGCTG 58.355 55.000 0.00 0.00 0.00 4.85
3658 3962 2.092103 TGCTAGTTTTGTTCACCCCTGT 60.092 45.455 0.00 0.00 0.00 4.00
3744 4048 1.169661 CGGTTTTACAGCCACTGCCA 61.170 55.000 0.00 0.00 38.69 4.92
3770 4076 1.541147 TCAAGCGCCATTTCAAGAAGG 59.459 47.619 2.29 0.00 0.00 3.46
3774 4080 0.457337 CGCCATTTCAAGAAGGCTGC 60.457 55.000 10.24 0.00 44.85 5.25
3776 4082 1.670967 GCCATTTCAAGAAGGCTGCAC 60.671 52.381 0.50 0.00 43.70 4.57
3780 4086 0.823356 TTCAAGAAGGCTGCACACCC 60.823 55.000 0.50 0.00 0.00 4.61
3783 4090 0.178953 AAGAAGGCTGCACACCCATT 60.179 50.000 0.50 0.00 0.00 3.16
3784 4091 0.896940 AGAAGGCTGCACACCCATTG 60.897 55.000 0.50 0.00 0.00 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.572814 TGGGTTCATTTTTCTCTTTGGATTTT 58.427 30.769 0.00 0.00 0.00 1.82
1 2 7.135591 TGGGTTCATTTTTCTCTTTGGATTT 57.864 32.000 0.00 0.00 0.00 2.17
2 3 6.745794 TGGGTTCATTTTTCTCTTTGGATT 57.254 33.333 0.00 0.00 0.00 3.01
3 4 6.745794 TTGGGTTCATTTTTCTCTTTGGAT 57.254 33.333 0.00 0.00 0.00 3.41
4 5 6.326064 TCATTGGGTTCATTTTTCTCTTTGGA 59.674 34.615 0.00 0.00 0.00 3.53
5 6 6.523840 TCATTGGGTTCATTTTTCTCTTTGG 58.476 36.000 0.00 0.00 0.00 3.28
8 9 7.965718 TCATTCATTGGGTTCATTTTTCTCTT 58.034 30.769 0.00 0.00 0.00 2.85
9 10 7.543359 TCATTCATTGGGTTCATTTTTCTCT 57.457 32.000 0.00 0.00 0.00 3.10
10 11 8.606040 TTTCATTCATTGGGTTCATTTTTCTC 57.394 30.769 0.00 0.00 0.00 2.87
11 12 8.977267 TTTTCATTCATTGGGTTCATTTTTCT 57.023 26.923 0.00 0.00 0.00 2.52
39 40 9.035607 GGTTTTCTTCCTTTCTTTTTCTTCATC 57.964 33.333 0.00 0.00 0.00 2.92
41 42 7.180229 AGGGTTTTCTTCCTTTCTTTTTCTTCA 59.820 33.333 0.00 0.00 0.00 3.02
51 52 9.204570 GCTTATTTTTAGGGTTTTCTTCCTTTC 57.795 33.333 0.00 0.00 34.75 2.62
54 55 6.785466 TGGCTTATTTTTAGGGTTTTCTTCCT 59.215 34.615 0.00 0.00 37.18 3.36
56 57 8.896320 TTTGGCTTATTTTTAGGGTTTTCTTC 57.104 30.769 0.00 0.00 0.00 2.87
58 59 7.717875 GGTTTTGGCTTATTTTTAGGGTTTTCT 59.282 33.333 0.00 0.00 0.00 2.52
59 60 7.499563 TGGTTTTGGCTTATTTTTAGGGTTTTC 59.500 33.333 0.00 0.00 0.00 2.29
60 61 7.347252 TGGTTTTGGCTTATTTTTAGGGTTTT 58.653 30.769 0.00 0.00 0.00 2.43
61 62 6.901300 TGGTTTTGGCTTATTTTTAGGGTTT 58.099 32.000 0.00 0.00 0.00 3.27
63 64 5.841783 TCTGGTTTTGGCTTATTTTTAGGGT 59.158 36.000 0.00 0.00 0.00 4.34
64 65 6.353404 TCTGGTTTTGGCTTATTTTTAGGG 57.647 37.500 0.00 0.00 0.00 3.53
66 67 8.655651 TGTTTCTGGTTTTGGCTTATTTTTAG 57.344 30.769 0.00 0.00 0.00 1.85
67 68 9.449719 TTTGTTTCTGGTTTTGGCTTATTTTTA 57.550 25.926 0.00 0.00 0.00 1.52
68 69 7.929941 TTGTTTCTGGTTTTGGCTTATTTTT 57.070 28.000 0.00 0.00 0.00 1.94
69 70 7.929941 TTTGTTTCTGGTTTTGGCTTATTTT 57.070 28.000 0.00 0.00 0.00 1.82
70 71 7.929941 TTTTGTTTCTGGTTTTGGCTTATTT 57.070 28.000 0.00 0.00 0.00 1.40
71 72 9.620259 TTATTTTGTTTCTGGTTTTGGCTTATT 57.380 25.926 0.00 0.00 0.00 1.40
73 74 9.103861 CTTTATTTTGTTTCTGGTTTTGGCTTA 57.896 29.630 0.00 0.00 0.00 3.09
75 76 6.038161 GCTTTATTTTGTTTCTGGTTTTGGCT 59.962 34.615 0.00 0.00 0.00 4.75
77 78 7.313951 TGCTTTATTTTGTTTCTGGTTTTGG 57.686 32.000 0.00 0.00 0.00 3.28
121 122 1.136110 CTGTTCGTTGCCCAGGTTTTT 59.864 47.619 0.00 0.00 0.00 1.94
122 123 0.744281 CTGTTCGTTGCCCAGGTTTT 59.256 50.000 0.00 0.00 0.00 2.43
123 124 1.734388 GCTGTTCGTTGCCCAGGTTT 61.734 55.000 0.00 0.00 0.00 3.27
124 125 2.193536 GCTGTTCGTTGCCCAGGTT 61.194 57.895 0.00 0.00 0.00 3.50
125 126 2.594592 GCTGTTCGTTGCCCAGGT 60.595 61.111 0.00 0.00 0.00 4.00
126 127 3.365265 GGCTGTTCGTTGCCCAGG 61.365 66.667 0.00 0.00 43.11 4.45
131 132 4.090057 GCTCGGGCTGTTCGTTGC 62.090 66.667 0.00 0.00 35.22 4.17
132 133 2.664851 TGCTCGGGCTGTTCGTTG 60.665 61.111 9.62 0.00 39.59 4.10
133 134 2.665185 GTGCTCGGGCTGTTCGTT 60.665 61.111 9.62 0.00 39.59 3.85
135 136 3.620300 TACGTGCTCGGGCTGTTCG 62.620 63.158 9.62 10.86 41.85 3.95
136 137 1.805945 CTACGTGCTCGGGCTGTTC 60.806 63.158 9.62 0.00 41.85 3.18
137 138 2.261671 CTACGTGCTCGGGCTGTT 59.738 61.111 9.62 0.00 41.85 3.16
138 139 3.760035 CCTACGTGCTCGGGCTGT 61.760 66.667 9.62 10.15 41.85 4.40
142 143 3.636313 TTTCGCCTACGTGCTCGGG 62.636 63.158 13.32 6.13 41.85 5.14
143 144 2.126228 TTTCGCCTACGTGCTCGG 60.126 61.111 13.32 0.00 41.85 4.63
144 145 2.774951 CGTTTCGCCTACGTGCTCG 61.775 63.158 6.63 6.63 41.18 5.03
145 146 1.005294 TTCGTTTCGCCTACGTGCTC 61.005 55.000 0.00 0.00 39.84 4.26
146 147 0.598158 TTTCGTTTCGCCTACGTGCT 60.598 50.000 0.00 0.00 39.84 4.40
147 148 0.232816 TTTTCGTTTCGCCTACGTGC 59.767 50.000 0.00 0.00 39.84 5.34
148 149 2.649140 TTTTTCGTTTCGCCTACGTG 57.351 45.000 0.00 0.00 39.84 4.49
165 166 2.482864 CCAACGAGGCTTGCAATTTTT 58.517 42.857 0.00 0.00 0.00 1.94
166 167 1.270252 CCCAACGAGGCTTGCAATTTT 60.270 47.619 0.00 0.00 35.39 1.82
167 168 0.318120 CCCAACGAGGCTTGCAATTT 59.682 50.000 0.00 0.00 35.39 1.82
168 169 1.966762 CCCAACGAGGCTTGCAATT 59.033 52.632 0.00 0.00 35.39 2.32
169 170 3.685435 CCCAACGAGGCTTGCAAT 58.315 55.556 0.00 0.00 35.39 3.56
187 188 3.977244 GTTGTGCCGGCAGTTGGG 61.977 66.667 33.73 0.00 0.00 4.12
188 189 4.326766 CGTTGTGCCGGCAGTTGG 62.327 66.667 33.73 16.46 0.00 3.77
189 190 3.582120 ACGTTGTGCCGGCAGTTG 61.582 61.111 33.73 22.10 0.00 3.16
190 191 3.582120 CACGTTGTGCCGGCAGTT 61.582 61.111 33.73 9.59 0.00 3.16
191 192 4.849310 ACACGTTGTGCCGGCAGT 62.849 61.111 33.73 22.15 36.98 4.40
192 193 4.012895 GACACGTTGTGCCGGCAG 62.013 66.667 33.73 21.36 36.98 4.85
195 196 4.953868 TCGGACACGTTGTGCCGG 62.954 66.667 22.78 0.00 45.60 6.13
196 197 3.403057 CTCGGACACGTTGTGCCG 61.403 66.667 19.55 19.55 46.29 5.69
197 198 2.758770 TAGCTCGGACACGTTGTGCC 62.759 60.000 0.00 0.00 41.85 5.01
198 199 1.344942 CTAGCTCGGACACGTTGTGC 61.345 60.000 0.00 0.00 41.85 4.57
199 200 0.039437 ACTAGCTCGGACACGTTGTG 60.039 55.000 0.00 0.00 41.85 3.33
200 201 1.527034 TACTAGCTCGGACACGTTGT 58.473 50.000 0.00 0.00 41.85 3.32
201 202 2.846039 ATACTAGCTCGGACACGTTG 57.154 50.000 0.00 0.00 41.85 4.10
202 203 4.201990 CCTTAATACTAGCTCGGACACGTT 60.202 45.833 0.00 0.00 41.85 3.99
203 204 3.314635 CCTTAATACTAGCTCGGACACGT 59.685 47.826 0.00 0.00 41.85 4.49
204 205 3.562973 TCCTTAATACTAGCTCGGACACG 59.437 47.826 0.00 0.00 42.74 4.49
205 206 4.579753 ACTCCTTAATACTAGCTCGGACAC 59.420 45.833 0.00 0.00 0.00 3.67
206 207 4.789807 ACTCCTTAATACTAGCTCGGACA 58.210 43.478 0.00 0.00 0.00 4.02
207 208 5.278414 GGAACTCCTTAATACTAGCTCGGAC 60.278 48.000 0.00 0.00 0.00 4.79
208 209 4.826183 GGAACTCCTTAATACTAGCTCGGA 59.174 45.833 0.00 0.00 0.00 4.55
209 210 4.022155 GGGAACTCCTTAATACTAGCTCGG 60.022 50.000 0.00 0.00 35.95 4.63
210 211 4.320348 CGGGAACTCCTTAATACTAGCTCG 60.320 50.000 0.00 0.00 35.95 5.03
211 212 4.559099 GCGGGAACTCCTTAATACTAGCTC 60.559 50.000 0.00 0.00 35.95 4.09
212 213 3.321396 GCGGGAACTCCTTAATACTAGCT 59.679 47.826 0.00 0.00 35.95 3.32
213 214 3.069158 TGCGGGAACTCCTTAATACTAGC 59.931 47.826 0.00 0.00 35.95 3.42
214 215 4.931661 TGCGGGAACTCCTTAATACTAG 57.068 45.455 0.00 0.00 35.95 2.57
215 216 4.652421 ACATGCGGGAACTCCTTAATACTA 59.348 41.667 0.00 0.00 35.95 1.82
216 217 3.454812 ACATGCGGGAACTCCTTAATACT 59.545 43.478 0.00 0.00 35.95 2.12
217 218 3.805207 ACATGCGGGAACTCCTTAATAC 58.195 45.455 0.00 0.00 35.95 1.89
218 219 4.652421 AGTACATGCGGGAACTCCTTAATA 59.348 41.667 0.00 0.00 35.95 0.98
219 220 3.454812 AGTACATGCGGGAACTCCTTAAT 59.545 43.478 0.00 0.00 35.95 1.40
220 221 2.835764 AGTACATGCGGGAACTCCTTAA 59.164 45.455 0.00 0.00 35.95 1.85
221 222 2.429610 GAGTACATGCGGGAACTCCTTA 59.570 50.000 0.00 0.00 33.74 2.69
222 223 1.207329 GAGTACATGCGGGAACTCCTT 59.793 52.381 0.00 0.00 33.74 3.36
223 224 0.824759 GAGTACATGCGGGAACTCCT 59.175 55.000 0.00 0.00 33.74 3.69
224 225 0.824759 AGAGTACATGCGGGAACTCC 59.175 55.000 0.00 0.00 39.33 3.85
225 226 2.544069 GCTAGAGTACATGCGGGAACTC 60.544 54.545 0.00 0.00 38.90 3.01
226 227 1.409427 GCTAGAGTACATGCGGGAACT 59.591 52.381 0.00 0.00 0.00 3.01
227 228 1.538419 GGCTAGAGTACATGCGGGAAC 60.538 57.143 0.00 0.00 0.00 3.62
228 229 0.750850 GGCTAGAGTACATGCGGGAA 59.249 55.000 0.00 0.00 0.00 3.97
229 230 1.113517 GGGCTAGAGTACATGCGGGA 61.114 60.000 0.00 0.00 0.00 5.14
230 231 1.367840 GGGCTAGAGTACATGCGGG 59.632 63.158 0.00 0.00 0.00 6.13
231 232 1.007271 CGGGCTAGAGTACATGCGG 60.007 63.158 0.00 0.00 0.00 5.69
232 233 0.039978 CTCGGGCTAGAGTACATGCG 60.040 60.000 0.00 0.00 33.75 4.73
233 234 0.319125 GCTCGGGCTAGAGTACATGC 60.319 60.000 0.00 0.00 40.26 4.06
234 235 0.039978 CGCTCGGGCTAGAGTACATG 60.040 60.000 5.36 0.00 40.26 3.21
235 236 0.465824 ACGCTCGGGCTAGAGTACAT 60.466 55.000 5.36 0.00 40.26 2.29
236 237 0.679002 AACGCTCGGGCTAGAGTACA 60.679 55.000 5.36 0.00 40.26 2.90
237 238 0.248539 CAACGCTCGGGCTAGAGTAC 60.249 60.000 5.36 0.00 40.26 2.73
238 239 2.001361 GCAACGCTCGGGCTAGAGTA 62.001 60.000 5.36 0.00 40.26 2.59
239 240 2.885861 CAACGCTCGGGCTAGAGT 59.114 61.111 5.36 0.00 40.26 3.24
240 241 2.583593 GCAACGCTCGGGCTAGAG 60.584 66.667 5.36 6.24 41.03 2.43
241 242 3.068691 AGCAACGCTCGGGCTAGA 61.069 61.111 5.36 0.00 35.82 2.43
242 243 2.887568 CAGCAACGCTCGGGCTAG 60.888 66.667 5.36 0.00 36.40 3.42
243 244 3.691342 ACAGCAACGCTCGGGCTA 61.691 61.111 5.36 0.00 36.40 3.93
249 250 4.374702 CACGCCACAGCAACGCTC 62.375 66.667 0.00 0.00 36.40 5.03
252 253 4.312231 CACCACGCCACAGCAACG 62.312 66.667 0.00 0.00 39.83 4.10
253 254 3.964875 CCACCACGCCACAGCAAC 61.965 66.667 0.00 0.00 39.83 4.17
256 257 4.697756 TAGCCACCACGCCACAGC 62.698 66.667 0.00 0.00 0.00 4.40
257 258 2.434884 CTAGCCACCACGCCACAG 60.435 66.667 0.00 0.00 0.00 3.66
258 259 4.697756 GCTAGCCACCACGCCACA 62.698 66.667 2.29 0.00 0.00 4.17
271 272 4.135153 ACAGACTGCCCGCGCTAG 62.135 66.667 5.56 0.04 35.36 3.42
272 273 4.435436 CACAGACTGCCCGCGCTA 62.435 66.667 5.56 0.00 35.36 4.26
275 276 3.414700 GTTCACAGACTGCCCGCG 61.415 66.667 1.25 0.00 0.00 6.46
276 277 3.414700 CGTTCACAGACTGCCCGC 61.415 66.667 1.25 0.00 0.00 6.13
277 278 2.738521 CCGTTCACAGACTGCCCG 60.739 66.667 1.25 0.00 0.00 6.13
278 279 2.358737 CCCGTTCACAGACTGCCC 60.359 66.667 1.25 0.00 0.00 5.36
279 280 1.374758 CTCCCGTTCACAGACTGCC 60.375 63.158 1.25 0.00 0.00 4.85
280 281 1.374758 CCTCCCGTTCACAGACTGC 60.375 63.158 1.25 0.00 0.00 4.40
281 282 0.038159 GACCTCCCGTTCACAGACTG 60.038 60.000 0.00 0.00 0.00 3.51
282 283 1.524863 CGACCTCCCGTTCACAGACT 61.525 60.000 0.00 0.00 0.00 3.24
283 284 1.080705 CGACCTCCCGTTCACAGAC 60.081 63.158 0.00 0.00 0.00 3.51
284 285 2.927580 GCGACCTCCCGTTCACAGA 61.928 63.158 0.00 0.00 0.00 3.41
285 286 2.432628 GCGACCTCCCGTTCACAG 60.433 66.667 0.00 0.00 0.00 3.66
286 287 3.220999 CTGCGACCTCCCGTTCACA 62.221 63.158 0.00 0.00 0.00 3.58
287 288 2.432628 CTGCGACCTCCCGTTCAC 60.433 66.667 0.00 0.00 0.00 3.18
288 289 3.691342 CCTGCGACCTCCCGTTCA 61.691 66.667 0.00 0.00 0.00 3.18
289 290 2.726822 AAACCTGCGACCTCCCGTTC 62.727 60.000 0.00 0.00 0.00 3.95
290 291 2.814835 AAACCTGCGACCTCCCGTT 61.815 57.895 0.00 0.00 0.00 4.44
291 292 3.239253 AAACCTGCGACCTCCCGT 61.239 61.111 0.00 0.00 0.00 5.28
292 293 2.725203 TTCAAACCTGCGACCTCCCG 62.725 60.000 0.00 0.00 0.00 5.14
293 294 0.322546 ATTCAAACCTGCGACCTCCC 60.323 55.000 0.00 0.00 0.00 4.30
294 295 1.087501 GATTCAAACCTGCGACCTCC 58.912 55.000 0.00 0.00 0.00 4.30
295 296 1.087501 GGATTCAAACCTGCGACCTC 58.912 55.000 0.00 0.00 0.00 3.85
296 297 0.400213 TGGATTCAAACCTGCGACCT 59.600 50.000 0.00 0.00 0.00 3.85
297 298 0.804989 CTGGATTCAAACCTGCGACC 59.195 55.000 0.00 0.00 0.00 4.79
298 299 0.169009 GCTGGATTCAAACCTGCGAC 59.831 55.000 0.00 0.00 41.06 5.19
299 300 2.555123 GCTGGATTCAAACCTGCGA 58.445 52.632 0.00 0.00 41.06 5.10
302 303 0.529378 GCCAGCTGGATTCAAACCTG 59.471 55.000 37.21 5.32 37.39 4.00
303 304 0.962356 CGCCAGCTGGATTCAAACCT 60.962 55.000 37.21 0.00 37.39 3.50
304 305 0.960364 TCGCCAGCTGGATTCAAACC 60.960 55.000 37.21 14.63 37.39 3.27
305 306 0.449388 CTCGCCAGCTGGATTCAAAC 59.551 55.000 37.21 15.41 37.39 2.93
306 307 1.308069 GCTCGCCAGCTGGATTCAAA 61.308 55.000 37.21 12.37 43.09 2.69
307 308 1.746615 GCTCGCCAGCTGGATTCAA 60.747 57.895 37.21 14.14 43.09 2.69
308 309 2.124983 GCTCGCCAGCTGGATTCA 60.125 61.111 37.21 14.55 43.09 2.57
343 344 4.101448 ATCTGACCAGCGGTGCCC 62.101 66.667 9.63 3.24 35.25 5.36
344 345 2.821366 CATCTGACCAGCGGTGCC 60.821 66.667 9.63 3.63 35.25 5.01
345 346 3.503363 GCATCTGACCAGCGGTGC 61.503 66.667 9.63 0.00 35.25 5.01
346 347 2.046988 TGCATCTGACCAGCGGTG 60.047 61.111 7.86 7.86 35.25 4.94
347 348 2.046892 GTGCATCTGACCAGCGGT 60.047 61.111 0.00 0.00 39.44 5.68
348 349 2.821366 GGTGCATCTGACCAGCGG 60.821 66.667 0.00 0.00 33.25 5.52
349 350 3.190849 CGGTGCATCTGACCAGCG 61.191 66.667 14.37 14.37 44.70 5.18
350 351 2.046892 ACGGTGCATCTGACCAGC 60.047 61.111 0.00 0.74 32.45 4.85
351 352 0.320683 TTGACGGTGCATCTGACCAG 60.321 55.000 0.00 0.00 32.45 4.00
352 353 0.324614 ATTGACGGTGCATCTGACCA 59.675 50.000 0.00 0.00 32.45 4.02
353 354 1.933853 GTATTGACGGTGCATCTGACC 59.066 52.381 0.00 0.00 0.00 4.02
354 355 2.348666 GTGTATTGACGGTGCATCTGAC 59.651 50.000 0.00 0.00 0.00 3.51
355 356 2.616960 GTGTATTGACGGTGCATCTGA 58.383 47.619 0.00 0.00 0.00 3.27
356 357 1.324435 CGTGTATTGACGGTGCATCTG 59.676 52.381 0.00 0.00 35.65 2.90
357 358 1.067142 ACGTGTATTGACGGTGCATCT 60.067 47.619 0.00 0.00 43.84 2.90
358 359 1.355971 ACGTGTATTGACGGTGCATC 58.644 50.000 0.00 0.00 43.84 3.91
359 360 1.803334 AACGTGTATTGACGGTGCAT 58.197 45.000 0.00 0.00 43.84 3.96
360 361 1.584175 AAACGTGTATTGACGGTGCA 58.416 45.000 0.00 0.00 38.65 4.57
361 362 5.428770 CATATAAACGTGTATTGACGGTGC 58.571 41.667 2.99 0.00 38.65 5.01
362 363 5.428770 GCATATAAACGTGTATTGACGGTG 58.571 41.667 2.99 0.00 38.65 4.94
363 364 4.207635 CGCATATAAACGTGTATTGACGGT 59.792 41.667 2.99 0.00 42.33 4.83
364 365 4.375606 CCGCATATAAACGTGTATTGACGG 60.376 45.833 14.67 14.67 43.84 4.79
365 366 4.207635 ACCGCATATAAACGTGTATTGACG 59.792 41.667 2.99 5.43 45.09 4.35
366 367 5.646467 ACCGCATATAAACGTGTATTGAC 57.354 39.130 2.99 0.00 0.00 3.18
367 368 6.665474 AAACCGCATATAAACGTGTATTGA 57.335 33.333 2.99 0.00 0.00 2.57
368 369 7.790673 GTCTAAACCGCATATAAACGTGTATTG 59.209 37.037 2.99 3.93 0.00 1.90
369 370 7.042523 GGTCTAAACCGCATATAAACGTGTATT 60.043 37.037 2.99 0.00 35.36 1.89
370 371 6.421801 GGTCTAAACCGCATATAAACGTGTAT 59.578 38.462 3.24 3.24 35.36 2.29
371 372 5.748152 GGTCTAAACCGCATATAAACGTGTA 59.252 40.000 0.00 0.00 35.36 2.90
372 373 4.567959 GGTCTAAACCGCATATAAACGTGT 59.432 41.667 0.00 0.00 35.36 4.49
373 374 5.074430 GGTCTAAACCGCATATAAACGTG 57.926 43.478 0.00 0.00 35.36 4.49
386 387 4.216902 AGCCGTTACAAAATGGTCTAAACC 59.783 41.667 0.00 0.00 46.66 3.27
387 388 5.366829 AGCCGTTACAAAATGGTCTAAAC 57.633 39.130 0.00 0.00 42.88 2.01
388 389 5.122711 GCTAGCCGTTACAAAATGGTCTAAA 59.877 40.000 2.29 0.00 42.88 1.85
389 390 4.632688 GCTAGCCGTTACAAAATGGTCTAA 59.367 41.667 2.29 0.00 42.88 2.10
390 391 4.186159 GCTAGCCGTTACAAAATGGTCTA 58.814 43.478 2.29 1.10 42.88 2.59
391 392 3.007635 GCTAGCCGTTACAAAATGGTCT 58.992 45.455 2.29 0.11 42.88 3.85
392 393 2.096980 GGCTAGCCGTTACAAAATGGTC 59.903 50.000 20.16 0.00 42.88 4.02
393 394 2.089201 GGCTAGCCGTTACAAAATGGT 58.911 47.619 20.16 0.00 42.88 3.55
394 395 1.404035 GGGCTAGCCGTTACAAAATGG 59.596 52.381 27.24 0.00 43.65 3.16
395 396 2.088423 TGGGCTAGCCGTTACAAAATG 58.912 47.619 27.24 0.00 36.85 2.32
396 397 2.365582 CTGGGCTAGCCGTTACAAAAT 58.634 47.619 27.24 0.00 36.85 1.82
397 398 1.816074 CTGGGCTAGCCGTTACAAAA 58.184 50.000 27.24 4.51 36.85 2.44
398 399 3.543884 CTGGGCTAGCCGTTACAAA 57.456 52.632 27.24 5.87 36.85 2.83
408 409 2.366590 TGTCAGTATCATGCTGGGCTAG 59.633 50.000 2.55 0.00 34.89 3.42
409 410 2.397597 TGTCAGTATCATGCTGGGCTA 58.602 47.619 2.55 0.00 34.89 3.93
410 411 1.206878 TGTCAGTATCATGCTGGGCT 58.793 50.000 2.55 0.00 34.89 5.19
411 412 1.878088 CATGTCAGTATCATGCTGGGC 59.122 52.381 2.55 0.00 36.68 5.36
412 413 2.876550 CACATGTCAGTATCATGCTGGG 59.123 50.000 2.55 0.00 44.26 4.45
413 414 3.800531 TCACATGTCAGTATCATGCTGG 58.199 45.455 2.55 0.00 44.26 4.85
414 415 6.872020 TCATATCACATGTCAGTATCATGCTG 59.128 38.462 0.00 0.00 44.26 4.41
415 416 7.001099 TCATATCACATGTCAGTATCATGCT 57.999 36.000 0.00 0.00 44.26 3.79
416 417 7.662604 TTCATATCACATGTCAGTATCATGC 57.337 36.000 0.00 0.00 44.26 4.06
420 421 9.888878 CCATTTTTCATATCACATGTCAGTATC 57.111 33.333 0.00 0.00 0.00 2.24
421 422 9.412460 ACCATTTTTCATATCACATGTCAGTAT 57.588 29.630 0.00 0.00 0.00 2.12
422 423 8.806429 ACCATTTTTCATATCACATGTCAGTA 57.194 30.769 0.00 0.00 0.00 2.74
423 424 7.707624 ACCATTTTTCATATCACATGTCAGT 57.292 32.000 0.00 0.00 0.00 3.41
424 425 8.131100 GGTACCATTTTTCATATCACATGTCAG 58.869 37.037 7.15 0.00 0.00 3.51
425 426 7.613411 TGGTACCATTTTTCATATCACATGTCA 59.387 33.333 11.60 0.00 0.00 3.58
426 427 7.995289 TGGTACCATTTTTCATATCACATGTC 58.005 34.615 11.60 0.00 0.00 3.06
427 428 7.953005 TGGTACCATTTTTCATATCACATGT 57.047 32.000 11.60 0.00 0.00 3.21
428 429 9.820725 AATTGGTACCATTTTTCATATCACATG 57.179 29.630 17.17 0.00 0.00 3.21
431 432 9.463443 GCTAATTGGTACCATTTTTCATATCAC 57.537 33.333 23.29 0.28 0.00 3.06
432 433 9.194972 TGCTAATTGGTACCATTTTTCATATCA 57.805 29.630 23.29 7.69 0.00 2.15
433 434 9.463443 GTGCTAATTGGTACCATTTTTCATATC 57.537 33.333 23.29 9.35 0.00 1.63
434 435 8.134895 CGTGCTAATTGGTACCATTTTTCATAT 58.865 33.333 23.29 6.50 0.00 1.78
435 436 7.121463 ACGTGCTAATTGGTACCATTTTTCATA 59.879 33.333 23.29 4.32 0.00 2.15
436 437 6.071616 ACGTGCTAATTGGTACCATTTTTCAT 60.072 34.615 23.29 7.90 0.00 2.57
437 438 5.241949 ACGTGCTAATTGGTACCATTTTTCA 59.758 36.000 23.29 18.15 0.00 2.69
438 439 5.705902 ACGTGCTAATTGGTACCATTTTTC 58.294 37.500 23.29 16.31 0.00 2.29
439 440 5.715434 ACGTGCTAATTGGTACCATTTTT 57.285 34.783 23.29 16.02 0.00 1.94
440 441 5.941647 AGTACGTGCTAATTGGTACCATTTT 59.058 36.000 23.29 18.15 36.72 1.82
441 442 5.353123 CAGTACGTGCTAATTGGTACCATTT 59.647 40.000 22.12 22.12 36.72 2.32
442 443 4.873827 CAGTACGTGCTAATTGGTACCATT 59.126 41.667 17.17 9.76 36.72 3.16
443 444 4.439057 CAGTACGTGCTAATTGGTACCAT 58.561 43.478 17.17 4.01 36.72 3.55
444 445 3.852286 CAGTACGTGCTAATTGGTACCA 58.148 45.455 11.60 11.60 36.72 3.25
457 458 2.967362 TCACAATTAGGGCAGTACGTG 58.033 47.619 0.00 0.00 0.00 4.49
458 459 3.906720 ATCACAATTAGGGCAGTACGT 57.093 42.857 0.00 0.00 0.00 3.57
459 460 4.056050 GGTATCACAATTAGGGCAGTACG 58.944 47.826 0.00 0.00 0.00 3.67
460 461 5.291905 AGGTATCACAATTAGGGCAGTAC 57.708 43.478 0.00 0.00 0.00 2.73
461 462 4.347000 GGAGGTATCACAATTAGGGCAGTA 59.653 45.833 0.00 0.00 0.00 2.74
462 463 3.136626 GGAGGTATCACAATTAGGGCAGT 59.863 47.826 0.00 0.00 0.00 4.40
463 464 3.744660 GGAGGTATCACAATTAGGGCAG 58.255 50.000 0.00 0.00 0.00 4.85
464 465 2.104111 CGGAGGTATCACAATTAGGGCA 59.896 50.000 0.00 0.00 0.00 5.36
465 466 2.104281 ACGGAGGTATCACAATTAGGGC 59.896 50.000 0.00 0.00 0.00 5.19
466 467 3.134081 ACACGGAGGTATCACAATTAGGG 59.866 47.826 0.00 0.00 0.00 3.53
467 468 4.402056 ACACGGAGGTATCACAATTAGG 57.598 45.455 0.00 0.00 0.00 2.69
468 469 6.145338 ACTACACGGAGGTATCACAATTAG 57.855 41.667 0.00 0.00 0.00 1.73
469 470 6.534475 AACTACACGGAGGTATCACAATTA 57.466 37.500 0.00 0.00 0.00 1.40
470 471 5.416271 AACTACACGGAGGTATCACAATT 57.584 39.130 0.00 0.00 0.00 2.32
471 472 6.154021 AGTTAACTACACGGAGGTATCACAAT 59.846 38.462 6.26 0.00 0.00 2.71
472 473 5.477984 AGTTAACTACACGGAGGTATCACAA 59.522 40.000 6.26 0.00 0.00 3.33
473 474 5.012239 AGTTAACTACACGGAGGTATCACA 58.988 41.667 6.26 0.00 0.00 3.58
474 475 5.356470 AGAGTTAACTACACGGAGGTATCAC 59.644 44.000 8.42 0.00 0.00 3.06
475 476 5.503927 AGAGTTAACTACACGGAGGTATCA 58.496 41.667 8.42 0.00 0.00 2.15
476 477 6.448207 AAGAGTTAACTACACGGAGGTATC 57.552 41.667 8.42 0.00 0.00 2.24
477 478 6.847421 AAAGAGTTAACTACACGGAGGTAT 57.153 37.500 8.42 0.00 0.00 2.73
478 479 6.449698 CAAAAGAGTTAACTACACGGAGGTA 58.550 40.000 8.42 0.00 0.00 3.08
479 480 5.295152 CAAAAGAGTTAACTACACGGAGGT 58.705 41.667 8.42 0.00 0.00 3.85
480 481 4.151867 GCAAAAGAGTTAACTACACGGAGG 59.848 45.833 8.42 0.00 0.00 4.30
481 482 4.151867 GGCAAAAGAGTTAACTACACGGAG 59.848 45.833 8.42 0.00 0.00 4.63
482 483 4.060205 GGCAAAAGAGTTAACTACACGGA 58.940 43.478 8.42 0.00 0.00 4.69
483 484 3.120786 CGGCAAAAGAGTTAACTACACGG 60.121 47.826 8.42 0.05 0.00 4.94
484 485 3.663493 GCGGCAAAAGAGTTAACTACACG 60.663 47.826 8.42 7.83 0.00 4.49
485 486 3.249080 TGCGGCAAAAGAGTTAACTACAC 59.751 43.478 8.42 0.00 0.00 2.90
486 487 3.468770 TGCGGCAAAAGAGTTAACTACA 58.531 40.909 8.42 0.00 0.00 2.74
487 488 3.744426 TCTGCGGCAAAAGAGTTAACTAC 59.256 43.478 8.42 2.64 0.00 2.73
488 489 3.994392 CTCTGCGGCAAAAGAGTTAACTA 59.006 43.478 8.42 0.00 36.08 2.24
489 490 2.808543 CTCTGCGGCAAAAGAGTTAACT 59.191 45.455 8.13 8.13 36.08 2.24
490 491 2.806244 TCTCTGCGGCAAAAGAGTTAAC 59.194 45.455 14.87 0.00 40.70 2.01
491 492 3.067106 CTCTCTGCGGCAAAAGAGTTAA 58.933 45.455 23.80 5.93 40.70 2.01
492 493 2.688507 CTCTCTGCGGCAAAAGAGTTA 58.311 47.619 23.80 6.47 40.70 2.24
493 494 1.517242 CTCTCTGCGGCAAAAGAGTT 58.483 50.000 23.80 0.00 40.70 3.01
494 495 0.952984 GCTCTCTGCGGCAAAAGAGT 60.953 55.000 28.49 0.00 40.70 3.24
495 496 1.792941 GCTCTCTGCGGCAAAAGAG 59.207 57.895 26.10 26.10 41.13 2.85
496 497 3.972227 GCTCTCTGCGGCAAAAGA 58.028 55.556 3.44 9.19 0.00 2.52
505 506 2.605030 CTTCTATATGCCGCTCTCTGC 58.395 52.381 0.00 0.00 38.57 4.26
506 507 2.673610 GCCTTCTATATGCCGCTCTCTG 60.674 54.545 0.00 0.00 0.00 3.35
507 508 1.548269 GCCTTCTATATGCCGCTCTCT 59.452 52.381 0.00 0.00 0.00 3.10
508 509 1.273606 TGCCTTCTATATGCCGCTCTC 59.726 52.381 0.00 0.00 0.00 3.20
509 510 1.001406 GTGCCTTCTATATGCCGCTCT 59.999 52.381 0.00 0.00 0.00 4.09
510 511 1.433534 GTGCCTTCTATATGCCGCTC 58.566 55.000 0.00 0.00 0.00 5.03
511 512 0.035458 GGTGCCTTCTATATGCCGCT 59.965 55.000 0.00 0.00 0.00 5.52
512 513 1.291877 CGGTGCCTTCTATATGCCGC 61.292 60.000 0.00 0.00 0.00 6.53
513 514 0.670546 CCGGTGCCTTCTATATGCCG 60.671 60.000 0.00 0.00 37.72 5.69
514 515 0.955919 GCCGGTGCCTTCTATATGCC 60.956 60.000 1.90 0.00 0.00 4.40
515 516 2.544726 GCCGGTGCCTTCTATATGC 58.455 57.895 1.90 0.00 0.00 3.14
533 534 4.025401 GTGGTTCCGCGTGCAAGG 62.025 66.667 4.92 0.00 0.00 3.61
534 535 3.276091 TGTGGTTCCGCGTGCAAG 61.276 61.111 4.92 0.00 0.00 4.01
535 536 3.578272 GTGTGGTTCCGCGTGCAA 61.578 61.111 4.92 0.00 0.00 4.08
538 539 3.698463 GTCGTGTGGTTCCGCGTG 61.698 66.667 4.92 0.00 39.28 5.34
539 540 4.955774 GGTCGTGTGGTTCCGCGT 62.956 66.667 4.92 0.00 39.28 6.01
541 542 4.612412 TGGGTCGTGTGGTTCCGC 62.612 66.667 0.00 0.00 0.00 5.54
542 543 2.357034 CTGGGTCGTGTGGTTCCG 60.357 66.667 0.00 0.00 0.00 4.30
543 544 1.597027 CACTGGGTCGTGTGGTTCC 60.597 63.158 0.00 0.00 0.00 3.62
544 545 1.145377 ACACTGGGTCGTGTGGTTC 59.855 57.895 0.00 0.00 45.74 3.62
545 546 3.316029 ACACTGGGTCGTGTGGTT 58.684 55.556 0.00 0.00 45.74 3.67
550 551 2.357517 GGAGCACACTGGGTCGTG 60.358 66.667 0.00 0.00 40.67 4.35
551 552 1.768684 ATTGGAGCACACTGGGTCGT 61.769 55.000 0.00 0.00 36.17 4.34
552 553 0.606401 AATTGGAGCACACTGGGTCG 60.606 55.000 0.00 0.00 36.17 4.79
553 554 1.620822 AAATTGGAGCACACTGGGTC 58.379 50.000 0.00 0.00 34.62 4.46
554 555 1.963515 GAAAATTGGAGCACACTGGGT 59.036 47.619 0.00 0.00 0.00 4.51
555 556 2.229784 GAGAAAATTGGAGCACACTGGG 59.770 50.000 0.00 0.00 0.00 4.45
556 557 2.886523 TGAGAAAATTGGAGCACACTGG 59.113 45.455 0.00 0.00 0.00 4.00
557 558 3.057736 CCTGAGAAAATTGGAGCACACTG 60.058 47.826 0.00 0.00 0.00 3.66
558 559 3.152341 CCTGAGAAAATTGGAGCACACT 58.848 45.455 0.00 0.00 0.00 3.55
559 560 2.352127 GCCTGAGAAAATTGGAGCACAC 60.352 50.000 0.00 0.00 0.00 3.82
560 561 1.888512 GCCTGAGAAAATTGGAGCACA 59.111 47.619 0.00 0.00 0.00 4.57
561 562 1.203287 GGCCTGAGAAAATTGGAGCAC 59.797 52.381 0.00 0.00 0.00 4.40
562 563 1.549203 GGCCTGAGAAAATTGGAGCA 58.451 50.000 0.00 0.00 0.00 4.26
563 564 0.453390 CGGCCTGAGAAAATTGGAGC 59.547 55.000 0.00 0.00 0.00 4.70
564 565 2.113860 TCGGCCTGAGAAAATTGGAG 57.886 50.000 0.00 0.00 0.00 3.86
565 566 2.026356 TGATCGGCCTGAGAAAATTGGA 60.026 45.455 0.00 0.00 0.00 3.53
566 567 2.098117 GTGATCGGCCTGAGAAAATTGG 59.902 50.000 0.00 0.00 0.00 3.16
567 568 2.098117 GGTGATCGGCCTGAGAAAATTG 59.902 50.000 0.00 0.00 0.00 2.32
568 569 2.369394 GGTGATCGGCCTGAGAAAATT 58.631 47.619 0.00 0.00 0.00 1.82
569 570 1.408822 GGGTGATCGGCCTGAGAAAAT 60.409 52.381 0.00 0.00 0.00 1.82
570 571 0.035439 GGGTGATCGGCCTGAGAAAA 60.035 55.000 0.00 0.00 0.00 2.29
571 572 1.602237 GGGTGATCGGCCTGAGAAA 59.398 57.895 0.00 0.00 0.00 2.52
572 573 2.721167 CGGGTGATCGGCCTGAGAA 61.721 63.158 0.00 0.00 34.35 2.87
573 574 3.147595 CGGGTGATCGGCCTGAGA 61.148 66.667 0.00 0.00 34.35 3.27
574 575 4.899239 GCGGGTGATCGGCCTGAG 62.899 72.222 16.46 6.01 35.92 3.35
581 582 3.697439 ATGGGTTGGCGGGTGATCG 62.697 63.158 0.00 0.00 0.00 3.69
582 583 1.379843 AATGGGTTGGCGGGTGATC 60.380 57.895 0.00 0.00 0.00 2.92
583 584 1.379843 GAATGGGTTGGCGGGTGAT 60.380 57.895 0.00 0.00 0.00 3.06
584 585 2.034999 GAATGGGTTGGCGGGTGA 59.965 61.111 0.00 0.00 0.00 4.02
585 586 3.439540 CGAATGGGTTGGCGGGTG 61.440 66.667 0.00 0.00 0.00 4.61
586 587 4.733542 CCGAATGGGTTGGCGGGT 62.734 66.667 0.00 0.00 40.08 5.28
591 592 0.108233 CAAATGGCCGAATGGGTTGG 60.108 55.000 0.00 0.00 38.44 3.77
592 593 0.740516 GCAAATGGCCGAATGGGTTG 60.741 55.000 0.00 0.00 38.44 3.77
593 594 1.190833 TGCAAATGGCCGAATGGGTT 61.191 50.000 0.00 0.00 43.89 4.11
594 595 1.606885 CTGCAAATGGCCGAATGGGT 61.607 55.000 0.00 0.00 43.89 4.51
595 596 1.142314 CTGCAAATGGCCGAATGGG 59.858 57.895 0.00 0.00 43.89 4.00
596 597 1.519898 GCTGCAAATGGCCGAATGG 60.520 57.895 0.00 0.00 43.89 3.16
597 598 1.519898 GGCTGCAAATGGCCGAATG 60.520 57.895 0.50 0.00 43.89 2.67
598 599 2.894919 GGCTGCAAATGGCCGAAT 59.105 55.556 0.50 0.00 43.89 3.34
603 604 2.028733 CGTTTGGGCTGCAAATGGC 61.029 57.895 0.50 0.00 45.13 4.40
604 605 0.033228 TTCGTTTGGGCTGCAAATGG 59.967 50.000 0.50 0.00 31.49 3.16
605 606 1.139163 GTTCGTTTGGGCTGCAAATG 58.861 50.000 0.50 0.04 0.00 2.32
606 607 0.318614 CGTTCGTTTGGGCTGCAAAT 60.319 50.000 0.50 0.00 0.00 2.32
607 608 1.064946 CGTTCGTTTGGGCTGCAAA 59.935 52.632 0.50 0.00 0.00 3.68
608 609 2.718731 CGTTCGTTTGGGCTGCAA 59.281 55.556 0.50 0.00 0.00 4.08
609 610 3.283684 CCGTTCGTTTGGGCTGCA 61.284 61.111 0.50 0.00 0.00 4.41
610 611 3.249973 GACCGTTCGTTTGGGCTGC 62.250 63.158 0.00 0.00 0.00 5.25
611 612 2.943653 GACCGTTCGTTTGGGCTG 59.056 61.111 0.00 0.00 0.00 4.85
612 613 2.647680 TTCGACCGTTCGTTTGGGCT 62.648 55.000 1.29 0.00 46.01 5.19
613 614 2.246042 TTCGACCGTTCGTTTGGGC 61.246 57.895 1.29 0.00 46.01 5.36
614 615 1.566077 GTTCGACCGTTCGTTTGGG 59.434 57.895 1.29 0.00 46.01 4.12
615 616 1.199859 CGTTCGACCGTTCGTTTGG 59.800 57.895 1.29 0.00 46.01 3.28
616 617 0.380948 CACGTTCGACCGTTCGTTTG 60.381 55.000 4.85 0.00 46.01 2.93
617 618 0.801836 ACACGTTCGACCGTTCGTTT 60.802 50.000 4.85 0.00 46.01 3.60
618 619 0.028770 TACACGTTCGACCGTTCGTT 59.971 50.000 4.85 0.00 46.01 3.85
619 620 0.028770 TTACACGTTCGACCGTTCGT 59.971 50.000 4.85 4.39 46.01 3.85
621 622 2.036556 TCTTACACGTTCGACCGTTC 57.963 50.000 4.85 0.00 39.45 3.95
622 623 2.322161 CATCTTACACGTTCGACCGTT 58.678 47.619 4.85 0.30 39.45 4.44
623 624 1.401931 CCATCTTACACGTTCGACCGT 60.402 52.381 0.73 0.73 42.87 4.83
624 625 1.135603 TCCATCTTACACGTTCGACCG 60.136 52.381 0.00 0.00 0.00 4.79
625 626 2.257034 GTCCATCTTACACGTTCGACC 58.743 52.381 0.00 0.00 0.00 4.79
626 627 2.257034 GGTCCATCTTACACGTTCGAC 58.743 52.381 0.00 0.00 0.00 4.20
627 628 1.203052 GGGTCCATCTTACACGTTCGA 59.797 52.381 0.00 0.00 0.00 3.71
628 629 1.636988 GGGTCCATCTTACACGTTCG 58.363 55.000 0.00 0.00 0.00 3.95
629 630 1.636988 CGGGTCCATCTTACACGTTC 58.363 55.000 0.00 0.00 38.91 3.95
630 631 0.248289 CCGGGTCCATCTTACACGTT 59.752 55.000 0.00 0.00 42.15 3.99
665 666 1.320507 TTTTGTGGTTTCGGTAGGCC 58.679 50.000 0.00 0.00 0.00 5.19
682 683 4.201910 CGTGTGATCGGCCTGAATATTTTT 60.202 41.667 0.00 0.00 0.00 1.94
683 684 3.312421 CGTGTGATCGGCCTGAATATTTT 59.688 43.478 0.00 0.00 0.00 1.82
684 685 2.872245 CGTGTGATCGGCCTGAATATTT 59.128 45.455 0.00 0.00 0.00 1.40
685 686 2.483876 CGTGTGATCGGCCTGAATATT 58.516 47.619 0.00 0.00 0.00 1.28
686 687 1.873903 GCGTGTGATCGGCCTGAATAT 60.874 52.381 0.00 0.00 0.00 1.28
687 688 0.529773 GCGTGTGATCGGCCTGAATA 60.530 55.000 0.00 0.00 0.00 1.75
688 689 1.815421 GCGTGTGATCGGCCTGAAT 60.815 57.895 0.00 0.00 0.00 2.57
689 690 2.434185 GCGTGTGATCGGCCTGAA 60.434 61.111 0.00 0.00 0.00 3.02
696 697 3.716539 ATGGGTCGGCGTGTGATCG 62.717 63.158 6.85 0.00 0.00 3.69
697 698 1.429148 GAATGGGTCGGCGTGTGATC 61.429 60.000 6.85 0.00 0.00 2.92
698 699 1.449601 GAATGGGTCGGCGTGTGAT 60.450 57.895 6.85 0.00 0.00 3.06
699 700 2.047655 GAATGGGTCGGCGTGTGA 60.048 61.111 6.85 0.00 0.00 3.58
700 701 3.487202 CGAATGGGTCGGCGTGTG 61.487 66.667 6.85 0.00 46.45 3.82
707 708 1.433064 CAAATGGCCGAATGGGTCG 59.567 57.895 0.00 0.00 46.34 4.79
708 709 1.141665 GCAAATGGCCGAATGGGTC 59.858 57.895 0.00 0.00 42.42 4.46
709 710 1.606885 CTGCAAATGGCCGAATGGGT 61.607 55.000 0.00 0.00 43.89 4.51
710 711 1.142314 CTGCAAATGGCCGAATGGG 59.858 57.895 0.00 0.00 43.89 4.00
711 712 1.519898 GCTGCAAATGGCCGAATGG 60.520 57.895 0.00 0.00 43.89 3.16
712 713 1.519898 GGCTGCAAATGGCCGAATG 60.520 57.895 0.50 0.00 43.89 2.67
713 714 2.894919 GGCTGCAAATGGCCGAAT 59.105 55.556 0.50 0.00 43.89 3.34
718 719 2.435410 GCTTGGGCTGCAAATGGC 60.435 61.111 0.50 0.00 45.13 4.40
719 720 2.125832 CGCTTGGGCTGCAAATGG 60.126 61.111 0.50 0.00 36.09 3.16
720 721 1.735198 CACGCTTGGGCTGCAAATG 60.735 57.895 0.50 0.00 36.09 2.32
721 722 2.652530 CACGCTTGGGCTGCAAAT 59.347 55.556 0.50 0.00 36.09 2.32
722 723 3.604667 CCACGCTTGGGCTGCAAA 61.605 61.111 0.07 0.00 39.57 3.68
739 740 4.937431 GTAGCAGCATCCCGCCCC 62.937 72.222 0.00 0.00 44.04 5.80
740 741 3.697439 TTGTAGCAGCATCCCGCCC 62.697 63.158 0.00 0.00 44.04 6.13
741 742 1.312371 TTTTGTAGCAGCATCCCGCC 61.312 55.000 0.00 0.00 44.04 6.13
742 743 0.099436 CTTTTGTAGCAGCATCCCGC 59.901 55.000 0.00 0.00 42.91 6.13
743 744 0.734889 CCTTTTGTAGCAGCATCCCG 59.265 55.000 0.00 0.00 0.00 5.14
744 745 1.474077 CACCTTTTGTAGCAGCATCCC 59.526 52.381 0.00 0.00 0.00 3.85
745 746 2.162681 ACACCTTTTGTAGCAGCATCC 58.837 47.619 0.00 0.00 36.32 3.51
746 747 4.695455 TCTTACACCTTTTGTAGCAGCATC 59.305 41.667 0.00 0.00 41.86 3.91
747 748 4.651778 TCTTACACCTTTTGTAGCAGCAT 58.348 39.130 0.00 0.00 41.86 3.79
748 749 4.079980 TCTTACACCTTTTGTAGCAGCA 57.920 40.909 0.00 0.00 41.86 4.41
749 750 4.695455 TCATCTTACACCTTTTGTAGCAGC 59.305 41.667 0.00 0.00 41.86 5.25
750 751 6.348540 GGTTCATCTTACACCTTTTGTAGCAG 60.349 42.308 0.00 0.00 41.86 4.24
751 752 5.472137 GGTTCATCTTACACCTTTTGTAGCA 59.528 40.000 0.00 0.00 41.86 3.49
752 753 5.106277 GGGTTCATCTTACACCTTTTGTAGC 60.106 44.000 0.00 0.00 41.86 3.58
753 754 5.121768 CGGGTTCATCTTACACCTTTTGTAG 59.878 44.000 0.00 0.00 41.86 2.74
754 755 4.998672 CGGGTTCATCTTACACCTTTTGTA 59.001 41.667 0.00 0.00 39.91 2.41
755 756 3.818773 CGGGTTCATCTTACACCTTTTGT 59.181 43.478 0.00 0.00 42.84 2.83
756 757 3.818773 ACGGGTTCATCTTACACCTTTTG 59.181 43.478 0.00 0.00 0.00 2.44
757 758 4.094830 ACGGGTTCATCTTACACCTTTT 57.905 40.909 0.00 0.00 0.00 2.27
758 759 3.782656 ACGGGTTCATCTTACACCTTT 57.217 42.857 0.00 0.00 0.00 3.11
759 760 3.369157 GCTACGGGTTCATCTTACACCTT 60.369 47.826 0.00 0.00 0.00 3.50
760 761 2.167900 GCTACGGGTTCATCTTACACCT 59.832 50.000 0.00 0.00 0.00 4.00
761 762 2.547826 GCTACGGGTTCATCTTACACC 58.452 52.381 0.00 0.00 0.00 4.16
762 763 2.547826 GGCTACGGGTTCATCTTACAC 58.452 52.381 0.00 0.00 0.00 2.90
763 764 1.483415 GGGCTACGGGTTCATCTTACA 59.517 52.381 0.00 0.00 0.00 2.41
764 765 1.483415 TGGGCTACGGGTTCATCTTAC 59.517 52.381 0.00 0.00 0.00 2.34
765 766 1.868713 TGGGCTACGGGTTCATCTTA 58.131 50.000 0.00 0.00 0.00 2.10
766 767 1.141053 GATGGGCTACGGGTTCATCTT 59.859 52.381 0.00 0.00 33.49 2.40
767 768 0.759346 GATGGGCTACGGGTTCATCT 59.241 55.000 0.00 0.00 33.49 2.90
768 769 0.600255 CGATGGGCTACGGGTTCATC 60.600 60.000 0.00 0.00 0.00 2.92
769 770 1.445942 CGATGGGCTACGGGTTCAT 59.554 57.895 0.00 0.00 0.00 2.57
770 771 2.727392 CCGATGGGCTACGGGTTCA 61.727 63.158 0.00 0.00 44.59 3.18
771 772 2.108362 CCGATGGGCTACGGGTTC 59.892 66.667 0.00 0.00 44.59 3.62
817 818 0.889186 AAGCGTCGGGATTTTGCACT 60.889 50.000 0.00 0.00 0.00 4.40
819 820 0.605319 AGAAGCGTCGGGATTTTGCA 60.605 50.000 0.00 0.00 0.00 4.08
1320 1356 2.685380 AGGCGGGTGGAGAGGAAG 60.685 66.667 0.00 0.00 0.00 3.46
1401 1437 3.130633 CCACACGAAGATGTTCTTGTCA 58.869 45.455 11.24 0.00 41.84 3.58
1506 1542 2.490217 CTGTAGCTGTCGACGGGG 59.510 66.667 25.20 11.96 0.00 5.73
1770 1806 1.227205 GGCATCAGCAGGTCTCTCG 60.227 63.158 0.00 0.00 44.61 4.04
1887 1923 0.035439 ATAGTTTGCCGTGACCCAGG 60.035 55.000 0.00 0.00 0.00 4.45
2034 2070 3.524095 TTCCATGACACAACATCCCTT 57.476 42.857 0.00 0.00 0.00 3.95
2211 2247 9.212641 CTATAATCCATCATCGACTCAAACAAT 57.787 33.333 0.00 0.00 0.00 2.71
2277 2313 2.583441 CCCAGCACGACCAAGGAGA 61.583 63.158 0.00 0.00 0.00 3.71
2730 2766 3.425659 ACCAAGCAAGATCCTTTCCTTC 58.574 45.455 0.00 0.00 0.00 3.46
2886 2922 4.384940 TCACATCCTTCACAACGATTTCA 58.615 39.130 0.00 0.00 0.00 2.69
2952 2988 2.646930 TGGCAGCATCTTCACCAATAG 58.353 47.619 0.00 0.00 0.00 1.73
2977 3013 5.827797 TCAGTAAAGATCAAAAAGCACCAGT 59.172 36.000 0.00 0.00 0.00 4.00
3012 3048 5.163405 ACAATAGTGCCTACTTCATCGTCAT 60.163 40.000 0.00 0.00 38.36 3.06
3085 3121 4.039124 AGACCGGCAATCAATTTCTTGTTT 59.961 37.500 0.00 0.00 33.87 2.83
3260 3296 7.910162 GCTTGCATATCTTAAACGAATCTCAAA 59.090 33.333 0.00 0.00 0.00 2.69
3261 3297 7.065683 TGCTTGCATATCTTAAACGAATCTCAA 59.934 33.333 0.00 0.00 0.00 3.02
3339 3377 1.597663 ACTTCAGGAACGCAACGAAAG 59.402 47.619 0.00 0.00 0.00 2.62
3349 3387 4.999950 ACAGATTGTCATGACTTCAGGAAC 59.000 41.667 25.55 9.12 38.46 3.62
3396 3434 6.248420 CGTGATAAATAAGTCTTGCCAAAACG 59.752 38.462 0.00 0.00 0.00 3.60
3427 3465 7.363268 GCCAACAACCATTTATCAGAAATCTCT 60.363 37.037 0.00 0.00 0.00 3.10
3530 3578 7.829725 TGTGAGCATAGAACTATTTGCAAATT 58.170 30.769 28.45 12.91 0.00 1.82
3562 3610 3.774766 ACACAGATAGGTTCACATAGCCA 59.225 43.478 0.00 0.00 0.00 4.75
3574 3622 0.537188 AGCCGGTCAACACAGATAGG 59.463 55.000 1.90 0.00 0.00 2.57
3594 3642 2.050077 GGTGAACTTTGCAGCCGC 60.050 61.111 0.00 0.00 39.24 6.53
3744 4048 2.710377 TGAAATGGCGCTTGACATAGT 58.290 42.857 7.64 0.00 41.80 2.12
3774 4080 3.927854 TGAAATGAATGCAATGGGTGTG 58.072 40.909 0.00 0.00 0.00 3.82
3776 4082 3.055675 ACCTGAAATGAATGCAATGGGTG 60.056 43.478 0.00 0.00 0.00 4.61
3780 4086 3.857052 AGCACCTGAAATGAATGCAATG 58.143 40.909 0.00 0.00 38.79 2.82
3783 4090 2.799017 AGAGCACCTGAAATGAATGCA 58.201 42.857 0.00 0.00 38.79 3.96
3784 4091 3.863142 AAGAGCACCTGAAATGAATGC 57.137 42.857 0.00 0.00 36.52 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.