Multiple sequence alignment - TraesCS3D01G357000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G357000 chr3D 100.000 3958 0 0 1 3958 469377524 469381481 0.000000e+00 7310.0
1 TraesCS3D01G357000 chr3D 83.448 145 11 8 479 616 331667874 331668012 5.370000e-24 122.0
2 TraesCS3D01G357000 chr3A 91.003 2323 134 37 1641 3908 611950778 611953080 0.000000e+00 3062.0
3 TraesCS3D01G357000 chr3A 88.205 585 31 19 940 1492 611950162 611950740 0.000000e+00 664.0
4 TraesCS3D01G357000 chr3A 93.162 117 7 1 1482 1598 265545026 265545141 1.890000e-38 171.0
5 TraesCS3D01G357000 chr3A 91.453 117 8 1 1490 1604 659558165 659558281 4.090000e-35 159.0
6 TraesCS3D01G357000 chr3A 88.235 102 12 0 1 102 611948245 611948346 5.370000e-24 122.0
7 TraesCS3D01G357000 chr3A 98.387 62 1 0 3897 3958 611953096 611953157 4.180000e-20 110.0
8 TraesCS3D01G357000 chr3A 85.714 98 12 1 315 412 611948590 611948685 7.000000e-18 102.0
9 TraesCS3D01G357000 chr3B 91.136 880 49 12 3007 3880 623661912 623662768 0.000000e+00 1166.0
10 TraesCS3D01G357000 chr3B 94.509 601 33 0 1641 2241 623660184 623660784 0.000000e+00 928.0
11 TraesCS3D01G357000 chr3B 92.154 599 23 6 916 1491 623659552 623660149 0.000000e+00 824.0
12 TraesCS3D01G357000 chr3B 91.688 397 32 1 2250 2645 623660880 623661276 2.080000e-152 549.0
13 TraesCS3D01G357000 chr3B 82.670 427 47 19 1 407 623658392 623658811 1.750000e-93 353.0
14 TraesCS3D01G357000 chr3B 92.035 226 15 2 2637 2860 623661392 623661616 8.260000e-82 315.0
15 TraesCS3D01G357000 chr3B 94.495 109 6 0 1490 1598 693344363 693344471 6.800000e-38 169.0
16 TraesCS3D01G357000 chr3B 92.308 117 7 2 1487 1602 3038138 3038023 8.800000e-37 165.0
17 TraesCS3D01G357000 chr3B 94.340 53 0 1 2959 3008 623661699 623661751 1.180000e-10 78.7
18 TraesCS3D01G357000 chr7D 77.132 774 146 23 1760 2520 204772043 204772798 1.700000e-113 420.0
19 TraesCS3D01G357000 chr7A 76.735 778 146 27 1760 2520 216786431 216787190 6.160000e-108 401.0
20 TraesCS3D01G357000 chr7A 94.690 113 4 2 1490 1602 163025782 163025672 1.460000e-39 174.0
21 TraesCS3D01G357000 chr7B 76.252 779 157 20 1760 2520 169268593 169269361 4.800000e-104 388.0
22 TraesCS3D01G357000 chr7B 93.043 115 7 1 1490 1604 34609755 34609642 2.450000e-37 167.0
23 TraesCS3D01G357000 chr5D 94.545 110 5 1 1490 1599 560242935 560243043 6.800000e-38 169.0
24 TraesCS3D01G357000 chr5B 92.437 119 6 3 1488 1606 464325576 464325461 2.450000e-37 167.0
25 TraesCS3D01G357000 chr5A 92.241 116 7 2 1490 1604 64655827 64655941 3.160000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G357000 chr3D 469377524 469381481 3957 False 7310.000000 7310 100.000000 1 3958 1 chr3D.!!$F2 3957
1 TraesCS3D01G357000 chr3A 611948245 611953157 4912 False 812.000000 3062 90.308800 1 3958 5 chr3A.!!$F3 3957
2 TraesCS3D01G357000 chr3B 623658392 623662768 4376 False 601.957143 1166 91.218857 1 3880 7 chr3B.!!$F2 3879
3 TraesCS3D01G357000 chr7D 204772043 204772798 755 False 420.000000 420 77.132000 1760 2520 1 chr7D.!!$F1 760
4 TraesCS3D01G357000 chr7A 216786431 216787190 759 False 401.000000 401 76.735000 1760 2520 1 chr7A.!!$F1 760
5 TraesCS3D01G357000 chr7B 169268593 169269361 768 False 388.000000 388 76.252000 1760 2520 1 chr7B.!!$F1 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
477 578 0.028110 GCAATGAGAATCCCGAACGC 59.972 55.0 0.0 0.0 0.0 4.84 F
744 845 0.035317 TGGCGAACAGAGAATGTGCT 59.965 50.0 0.0 0.0 43.0 4.40 F
1504 3464 0.042131 ATGGTACTCCCTCCCGTTCA 59.958 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 3754 0.032403 TGCTGTCAATTGCAAGTGGC 59.968 50.0 23.58 23.58 45.13 5.01 R
1977 3959 0.395312 GGTGGACAAAGTTCTCCGGA 59.605 55.0 2.93 2.93 0.00 5.14 R
3028 5422 0.681243 GTGAAGGGGAGGATGCAACC 60.681 60.0 4.51 4.51 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 0.594284 GGACGGCGAAATCTAGGACG 60.594 60.000 16.62 0.00 0.00 4.79
114 156 7.115805 GTCAGTCACTTGTTATGTATCGTCAAA 59.884 37.037 0.00 0.00 0.00 2.69
115 157 7.115805 TCAGTCACTTGTTATGTATCGTCAAAC 59.884 37.037 0.00 0.00 0.00 2.93
116 158 7.116376 CAGTCACTTGTTATGTATCGTCAAACT 59.884 37.037 0.00 0.00 0.00 2.66
117 159 7.116376 AGTCACTTGTTATGTATCGTCAAACTG 59.884 37.037 0.00 0.00 0.00 3.16
118 160 6.926826 TCACTTGTTATGTATCGTCAAACTGT 59.073 34.615 0.00 0.00 0.00 3.55
119 161 8.083462 TCACTTGTTATGTATCGTCAAACTGTA 58.917 33.333 0.00 0.00 0.00 2.74
120 162 8.705134 CACTTGTTATGTATCGTCAAACTGTAA 58.295 33.333 0.00 0.00 0.00 2.41
129 171 6.952935 ATCGTCAAACTGTAAGCTTAAGAG 57.047 37.500 7.99 9.73 37.60 2.85
139 181 7.268586 ACTGTAAGCTTAAGAGATGTATGGTG 58.731 38.462 7.99 0.00 37.60 4.17
140 182 6.582636 TGTAAGCTTAAGAGATGTATGGTGG 58.417 40.000 7.99 0.00 0.00 4.61
141 183 5.700402 AAGCTTAAGAGATGTATGGTGGT 57.300 39.130 6.67 0.00 0.00 4.16
142 184 5.700402 AGCTTAAGAGATGTATGGTGGTT 57.300 39.130 6.67 0.00 0.00 3.67
143 185 6.067217 AGCTTAAGAGATGTATGGTGGTTT 57.933 37.500 6.67 0.00 0.00 3.27
145 187 7.275920 AGCTTAAGAGATGTATGGTGGTTTAG 58.724 38.462 6.67 0.00 0.00 1.85
150 192 1.373536 TGTATGGTGGTTTAGCCCCA 58.626 50.000 0.00 0.00 40.33 4.96
189 235 2.357009 CAGTAGACTGCATGGATTTGCC 59.643 50.000 0.00 0.00 42.06 4.52
192 238 0.685458 GACTGCATGGATTTGCCCCT 60.685 55.000 0.00 0.00 42.06 4.79
193 239 0.252375 ACTGCATGGATTTGCCCCTT 60.252 50.000 0.00 0.00 42.06 3.95
204 251 4.449229 GGATTTGCCCCTTTAGGTATGGAT 60.449 45.833 0.00 0.00 0.00 3.41
212 259 5.449553 CCCTTTAGGTATGGATTTTCTGCT 58.550 41.667 0.00 0.00 0.00 4.24
216 263 8.406297 CCTTTAGGTATGGATTTTCTGCTAAAC 58.594 37.037 0.00 0.00 0.00 2.01
249 327 3.571401 CCAATGGAGGCATGAACTTATCC 59.429 47.826 0.00 0.00 0.00 2.59
263 341 4.143986 ACTTATCCTAGCTTGTTCCTGC 57.856 45.455 0.00 0.00 0.00 4.85
264 342 2.890808 TATCCTAGCTTGTTCCTGCG 57.109 50.000 0.00 0.00 0.00 5.18
273 351 0.036388 TTGTTCCTGCGACTGGGATC 60.036 55.000 0.00 0.00 0.00 3.36
276 354 1.899437 TTCCTGCGACTGGGATCACC 61.899 60.000 0.00 0.00 40.81 4.02
287 365 1.906574 TGGGATCACCTGTTCTGTACC 59.093 52.381 0.00 0.00 41.11 3.34
295 396 3.186409 CACCTGTTCTGTACCGATTGTTG 59.814 47.826 0.00 0.00 0.00 3.33
296 397 2.742053 CCTGTTCTGTACCGATTGTTGG 59.258 50.000 0.00 0.00 0.00 3.77
297 398 3.399330 CTGTTCTGTACCGATTGTTGGT 58.601 45.455 0.00 0.00 43.62 3.67
298 399 3.811083 TGTTCTGTACCGATTGTTGGTT 58.189 40.909 0.00 0.00 40.96 3.67
299 400 4.200874 TGTTCTGTACCGATTGTTGGTTT 58.799 39.130 0.00 0.00 40.96 3.27
300 401 4.035792 TGTTCTGTACCGATTGTTGGTTTG 59.964 41.667 0.00 0.00 40.96 2.93
301 402 2.550606 TCTGTACCGATTGTTGGTTTGC 59.449 45.455 0.00 0.00 40.96 3.68
302 403 2.552315 CTGTACCGATTGTTGGTTTGCT 59.448 45.455 0.00 0.00 40.96 3.91
303 404 2.292016 TGTACCGATTGTTGGTTTGCTG 59.708 45.455 0.00 0.00 40.96 4.41
304 405 0.673437 ACCGATTGTTGGTTTGCTGG 59.327 50.000 0.00 0.00 35.82 4.85
305 406 0.673437 CCGATTGTTGGTTTGCTGGT 59.327 50.000 0.00 0.00 0.00 4.00
306 407 1.602668 CCGATTGTTGGTTTGCTGGTG 60.603 52.381 0.00 0.00 0.00 4.17
307 408 1.066908 CGATTGTTGGTTTGCTGGTGT 59.933 47.619 0.00 0.00 0.00 4.16
308 409 2.292016 CGATTGTTGGTTTGCTGGTGTA 59.708 45.455 0.00 0.00 0.00 2.90
309 410 3.243234 CGATTGTTGGTTTGCTGGTGTAA 60.243 43.478 0.00 0.00 0.00 2.41
310 411 4.558496 CGATTGTTGGTTTGCTGGTGTAAT 60.558 41.667 0.00 0.00 0.00 1.89
311 412 4.744795 TTGTTGGTTTGCTGGTGTAATT 57.255 36.364 0.00 0.00 0.00 1.40
312 413 4.052159 TGTTGGTTTGCTGGTGTAATTG 57.948 40.909 0.00 0.00 0.00 2.32
313 414 3.449018 TGTTGGTTTGCTGGTGTAATTGT 59.551 39.130 0.00 0.00 0.00 2.71
314 415 3.724508 TGGTTTGCTGGTGTAATTGTG 57.275 42.857 0.00 0.00 0.00 3.33
315 416 3.027412 TGGTTTGCTGGTGTAATTGTGT 58.973 40.909 0.00 0.00 0.00 3.72
316 417 3.449018 TGGTTTGCTGGTGTAATTGTGTT 59.551 39.130 0.00 0.00 0.00 3.32
324 425 4.537751 TGGTGTAATTGTGTTCCTCCAAA 58.462 39.130 0.00 0.00 0.00 3.28
334 435 3.003793 GTGTTCCTCCAAAGAAGTTGCTC 59.996 47.826 0.00 0.00 35.74 4.26
335 436 2.554462 GTTCCTCCAAAGAAGTTGCTCC 59.446 50.000 0.00 0.00 35.74 4.70
336 437 1.774254 TCCTCCAAAGAAGTTGCTCCA 59.226 47.619 0.00 0.00 35.74 3.86
351 452 7.325660 AGTTGCTCCACACATGATAATAAAG 57.674 36.000 0.00 0.00 0.00 1.85
394 495 7.650903 ACAAGTTGATTGCTTGATTTTTCTCTC 59.349 33.333 10.54 0.00 44.29 3.20
395 496 7.521871 AGTTGATTGCTTGATTTTTCTCTCT 57.478 32.000 0.00 0.00 0.00 3.10
402 503 5.413833 TGCTTGATTTTTCTCTCTTGCTAGG 59.586 40.000 0.00 0.00 0.00 3.02
407 508 6.652481 TGATTTTTCTCTCTTGCTAGGAAGTG 59.348 38.462 21.72 19.34 0.00 3.16
412 513 0.246635 TCTTGCTAGGAAGTGGCGAC 59.753 55.000 21.72 0.00 34.70 5.19
428 529 1.265905 GCGACACCATTTTTCCGTCTT 59.734 47.619 0.00 0.00 0.00 3.01
429 530 2.287368 GCGACACCATTTTTCCGTCTTT 60.287 45.455 0.00 0.00 0.00 2.52
430 531 3.296628 CGACACCATTTTTCCGTCTTTG 58.703 45.455 0.00 0.00 0.00 2.77
439 540 3.726517 CCGTCTTTGCGGTGCTGG 61.727 66.667 0.00 0.00 46.11 4.85
440 541 4.389576 CGTCTTTGCGGTGCTGGC 62.390 66.667 0.00 0.00 0.00 4.85
441 542 4.043200 GTCTTTGCGGTGCTGGCC 62.043 66.667 0.00 0.00 0.00 5.36
454 555 3.338250 TGGCCCCATCCACTGACC 61.338 66.667 0.00 0.00 0.00 4.02
457 558 1.076549 GCCCCATCCACTGACCAAA 59.923 57.895 0.00 0.00 0.00 3.28
458 559 0.967380 GCCCCATCCACTGACCAAAG 60.967 60.000 0.00 0.00 0.00 2.77
460 561 0.251297 CCCATCCACTGACCAAAGCA 60.251 55.000 0.00 0.00 0.00 3.91
461 562 1.619654 CCATCCACTGACCAAAGCAA 58.380 50.000 0.00 0.00 0.00 3.91
462 563 2.173519 CCATCCACTGACCAAAGCAAT 58.826 47.619 0.00 0.00 0.00 3.56
467 568 2.886523 CCACTGACCAAAGCAATGAGAA 59.113 45.455 0.00 0.00 0.00 2.87
468 569 3.508793 CCACTGACCAAAGCAATGAGAAT 59.491 43.478 0.00 0.00 0.00 2.40
471 572 3.091545 TGACCAAAGCAATGAGAATCCC 58.908 45.455 0.00 0.00 0.00 3.85
472 573 2.094675 ACCAAAGCAATGAGAATCCCG 58.905 47.619 0.00 0.00 0.00 5.14
473 574 2.290896 ACCAAAGCAATGAGAATCCCGA 60.291 45.455 0.00 0.00 0.00 5.14
475 576 3.428045 CCAAAGCAATGAGAATCCCGAAC 60.428 47.826 0.00 0.00 0.00 3.95
477 578 0.028110 GCAATGAGAATCCCGAACGC 59.972 55.000 0.00 0.00 0.00 4.84
478 579 0.657840 CAATGAGAATCCCGAACGCC 59.342 55.000 0.00 0.00 0.00 5.68
480 581 1.338136 ATGAGAATCCCGAACGCCCT 61.338 55.000 0.00 0.00 0.00 5.19
481 582 1.227292 GAGAATCCCGAACGCCCTC 60.227 63.158 0.00 0.00 0.00 4.30
482 583 1.956629 GAGAATCCCGAACGCCCTCA 61.957 60.000 0.00 0.00 0.00 3.86
484 585 2.515996 GAATCCCGAACGCCCTCACA 62.516 60.000 0.00 0.00 0.00 3.58
485 586 1.910580 AATCCCGAACGCCCTCACAT 61.911 55.000 0.00 0.00 0.00 3.21
486 587 1.910580 ATCCCGAACGCCCTCACATT 61.911 55.000 0.00 0.00 0.00 2.71
489 590 0.596082 CCGAACGCCCTCACATTTTT 59.404 50.000 0.00 0.00 0.00 1.94
514 615 4.336889 AACTCAAGTTGTCATCCGAGAA 57.663 40.909 2.11 0.00 36.80 2.87
515 616 3.919216 ACTCAAGTTGTCATCCGAGAAG 58.081 45.455 2.11 0.00 0.00 2.85
516 617 3.574396 ACTCAAGTTGTCATCCGAGAAGA 59.426 43.478 2.11 0.00 0.00 2.87
517 618 4.039245 ACTCAAGTTGTCATCCGAGAAGAA 59.961 41.667 2.11 0.00 0.00 2.52
518 619 4.560128 TCAAGTTGTCATCCGAGAAGAAG 58.440 43.478 2.11 0.00 0.00 2.85
519 620 4.280929 TCAAGTTGTCATCCGAGAAGAAGA 59.719 41.667 2.11 0.00 0.00 2.87
520 621 4.873746 AGTTGTCATCCGAGAAGAAGAA 57.126 40.909 0.00 0.00 0.00 2.52
521 622 5.215252 AGTTGTCATCCGAGAAGAAGAAA 57.785 39.130 0.00 0.00 0.00 2.52
522 623 5.611374 AGTTGTCATCCGAGAAGAAGAAAA 58.389 37.500 0.00 0.00 0.00 2.29
523 624 6.055588 AGTTGTCATCCGAGAAGAAGAAAAA 58.944 36.000 0.00 0.00 0.00 1.94
550 651 8.954950 TTCAAAAGATAAACTGAAATTTGCCA 57.045 26.923 0.00 0.00 0.00 4.92
551 652 9.558396 TTCAAAAGATAAACTGAAATTTGCCAT 57.442 25.926 0.00 0.00 0.00 4.40
552 653 9.206870 TCAAAAGATAAACTGAAATTTGCCATC 57.793 29.630 0.00 0.00 0.00 3.51
553 654 8.445493 CAAAAGATAAACTGAAATTTGCCATCC 58.555 33.333 0.00 0.00 0.00 3.51
554 655 5.894807 AGATAAACTGAAATTTGCCATCCG 58.105 37.500 0.00 0.00 0.00 4.18
555 656 5.652014 AGATAAACTGAAATTTGCCATCCGA 59.348 36.000 0.00 0.00 0.00 4.55
556 657 4.599047 AAACTGAAATTTGCCATCCGAA 57.401 36.364 0.00 0.00 0.00 4.30
557 658 4.599047 AACTGAAATTTGCCATCCGAAA 57.401 36.364 0.00 0.00 0.00 3.46
558 659 4.599047 ACTGAAATTTGCCATCCGAAAA 57.401 36.364 0.00 0.00 0.00 2.29
559 660 5.151297 ACTGAAATTTGCCATCCGAAAAT 57.849 34.783 0.00 0.00 0.00 1.82
560 661 6.279513 ACTGAAATTTGCCATCCGAAAATA 57.720 33.333 0.00 0.00 0.00 1.40
561 662 6.696411 ACTGAAATTTGCCATCCGAAAATAA 58.304 32.000 0.00 0.00 0.00 1.40
562 663 7.158021 ACTGAAATTTGCCATCCGAAAATAAA 58.842 30.769 0.00 0.00 0.00 1.40
563 664 7.823799 ACTGAAATTTGCCATCCGAAAATAAAT 59.176 29.630 0.00 0.00 0.00 1.40
564 665 8.558973 TGAAATTTGCCATCCGAAAATAAATT 57.441 26.923 0.00 0.00 0.00 1.82
565 666 9.007901 TGAAATTTGCCATCCGAAAATAAATTT 57.992 25.926 0.00 0.00 38.31 1.82
566 667 9.276397 GAAATTTGCCATCCGAAAATAAATTTG 57.724 29.630 0.00 0.00 36.77 2.32
567 668 7.920160 ATTTGCCATCCGAAAATAAATTTGT 57.080 28.000 0.00 0.00 0.00 2.83
568 669 9.442047 AATTTGCCATCCGAAAATAAATTTGTA 57.558 25.926 0.00 0.00 0.00 2.41
569 670 7.820044 TTGCCATCCGAAAATAAATTTGTAC 57.180 32.000 0.00 0.00 0.00 2.90
570 671 6.925211 TGCCATCCGAAAATAAATTTGTACA 58.075 32.000 0.00 0.00 0.00 2.90
571 672 7.378966 TGCCATCCGAAAATAAATTTGTACAA 58.621 30.769 3.59 3.59 0.00 2.41
572 673 8.037758 TGCCATCCGAAAATAAATTTGTACAAT 58.962 29.630 9.56 0.00 0.00 2.71
573 674 8.878769 GCCATCCGAAAATAAATTTGTACAATT 58.121 29.630 9.56 2.85 0.00 2.32
589 690 9.959749 TTTGTACAATTAAACTTGAACATCCTC 57.040 29.630 9.56 0.00 0.00 3.71
590 691 7.802738 TGTACAATTAAACTTGAACATCCTCG 58.197 34.615 0.00 0.00 0.00 4.63
591 692 5.699839 ACAATTAAACTTGAACATCCTCGC 58.300 37.500 0.00 0.00 0.00 5.03
592 693 4.600012 ATTAAACTTGAACATCCTCGCG 57.400 40.909 0.00 0.00 0.00 5.87
593 694 1.878953 AAACTTGAACATCCTCGCGT 58.121 45.000 5.77 0.00 0.00 6.01
594 695 1.429463 AACTTGAACATCCTCGCGTC 58.571 50.000 5.77 0.00 0.00 5.19
595 696 0.317160 ACTTGAACATCCTCGCGTCA 59.683 50.000 5.77 0.00 0.00 4.35
596 697 0.716108 CTTGAACATCCTCGCGTCAC 59.284 55.000 5.77 0.00 0.00 3.67
597 698 0.317160 TTGAACATCCTCGCGTCACT 59.683 50.000 5.77 0.00 0.00 3.41
598 699 0.388520 TGAACATCCTCGCGTCACTG 60.389 55.000 5.77 2.89 0.00 3.66
599 700 0.109272 GAACATCCTCGCGTCACTGA 60.109 55.000 5.77 0.00 0.00 3.41
600 701 0.317160 AACATCCTCGCGTCACTGAA 59.683 50.000 5.77 0.00 0.00 3.02
601 702 0.388649 ACATCCTCGCGTCACTGAAC 60.389 55.000 5.77 0.00 0.00 3.18
602 703 0.109086 CATCCTCGCGTCACTGAACT 60.109 55.000 5.77 0.00 0.00 3.01
603 704 0.603569 ATCCTCGCGTCACTGAACTT 59.396 50.000 5.77 0.00 0.00 2.66
604 705 0.318699 TCCTCGCGTCACTGAACTTG 60.319 55.000 5.77 0.00 0.00 3.16
605 706 1.488957 CTCGCGTCACTGAACTTGC 59.511 57.895 5.77 0.00 0.00 4.01
606 707 1.891060 CTCGCGTCACTGAACTTGCC 61.891 60.000 5.77 0.00 0.00 4.52
607 708 2.243957 CGCGTCACTGAACTTGCCA 61.244 57.895 0.00 0.00 0.00 4.92
608 709 1.568612 CGCGTCACTGAACTTGCCAT 61.569 55.000 0.00 0.00 0.00 4.40
609 710 1.438651 GCGTCACTGAACTTGCCATA 58.561 50.000 0.00 0.00 0.00 2.74
610 711 1.804151 GCGTCACTGAACTTGCCATAA 59.196 47.619 0.00 0.00 0.00 1.90
611 712 2.225491 GCGTCACTGAACTTGCCATAAA 59.775 45.455 0.00 0.00 0.00 1.40
612 713 3.304391 GCGTCACTGAACTTGCCATAAAA 60.304 43.478 0.00 0.00 0.00 1.52
613 714 4.791411 GCGTCACTGAACTTGCCATAAAAA 60.791 41.667 0.00 0.00 0.00 1.94
648 749 2.301870 ACACATGTGACACTTATCGGGT 59.698 45.455 31.94 1.65 0.00 5.28
654 755 5.471556 TGTGACACTTATCGGGTCTAAAA 57.528 39.130 7.20 0.00 32.84 1.52
660 761 5.885912 ACACTTATCGGGTCTAAAATTGCAT 59.114 36.000 0.00 0.00 0.00 3.96
666 767 4.096231 TCGGGTCTAAAATTGCATGTGATG 59.904 41.667 0.00 0.00 0.00 3.07
671 772 6.852853 GGTCTAAAATTGCATGTGATGTATCG 59.147 38.462 0.00 0.00 0.00 2.92
673 774 7.584123 GTCTAAAATTGCATGTGATGTATCGTC 59.416 37.037 0.00 0.00 0.00 4.20
679 780 3.369147 GCATGTGATGTATCGTCTATGGC 59.631 47.826 0.00 0.00 0.00 4.40
684 785 5.154932 GTGATGTATCGTCTATGGCAGTAC 58.845 45.833 0.00 0.00 0.00 2.73
698 799 1.401018 GCAGTACCCAACATTTCACGC 60.401 52.381 0.00 0.00 0.00 5.34
702 803 4.214545 CAGTACCCAACATTTCACGCTTTA 59.785 41.667 0.00 0.00 0.00 1.85
703 804 5.007682 AGTACCCAACATTTCACGCTTTAT 58.992 37.500 0.00 0.00 0.00 1.40
704 805 4.864704 ACCCAACATTTCACGCTTTATT 57.135 36.364 0.00 0.00 0.00 1.40
705 806 5.968528 ACCCAACATTTCACGCTTTATTA 57.031 34.783 0.00 0.00 0.00 0.98
706 807 6.524101 ACCCAACATTTCACGCTTTATTAT 57.476 33.333 0.00 0.00 0.00 1.28
707 808 6.560711 ACCCAACATTTCACGCTTTATTATC 58.439 36.000 0.00 0.00 0.00 1.75
708 809 5.977129 CCCAACATTTCACGCTTTATTATCC 59.023 40.000 0.00 0.00 0.00 2.59
709 810 5.977129 CCAACATTTCACGCTTTATTATCCC 59.023 40.000 0.00 0.00 0.00 3.85
710 811 5.418310 ACATTTCACGCTTTATTATCCCG 57.582 39.130 0.00 0.00 0.00 5.14
711 812 4.879545 ACATTTCACGCTTTATTATCCCGT 59.120 37.500 0.00 0.00 0.00 5.28
714 815 2.431419 TCACGCTTTATTATCCCGTGGA 59.569 45.455 10.91 0.00 46.44 4.02
715 816 2.800544 CACGCTTTATTATCCCGTGGAG 59.199 50.000 3.80 0.00 43.76 3.86
716 817 1.798813 CGCTTTATTATCCCGTGGAGC 59.201 52.381 0.00 0.00 34.05 4.70
717 818 2.152016 GCTTTATTATCCCGTGGAGCC 58.848 52.381 0.00 0.00 34.05 4.70
718 819 2.486548 GCTTTATTATCCCGTGGAGCCA 60.487 50.000 0.00 0.00 34.05 4.75
720 821 0.685097 TATTATCCCGTGGAGCCAGC 59.315 55.000 0.00 0.00 34.05 4.85
725 826 4.457496 CCGTGGAGCCAGCGTGAT 62.457 66.667 9.46 0.00 0.00 3.06
726 827 3.190849 CGTGGAGCCAGCGTGATG 61.191 66.667 0.00 0.00 0.00 3.07
727 828 2.821366 GTGGAGCCAGCGTGATGG 60.821 66.667 0.00 0.00 43.72 3.51
733 834 2.741985 CCAGCGTGATGGCGAACA 60.742 61.111 0.00 0.00 38.18 3.18
734 835 2.743752 CCAGCGTGATGGCGAACAG 61.744 63.158 0.00 0.00 38.18 3.16
736 837 1.446792 AGCGTGATGGCGAACAGAG 60.447 57.895 0.00 0.00 38.18 3.35
737 838 1.446099 GCGTGATGGCGAACAGAGA 60.446 57.895 0.00 0.00 0.00 3.10
738 839 1.014044 GCGTGATGGCGAACAGAGAA 61.014 55.000 0.00 0.00 0.00 2.87
739 840 1.645034 CGTGATGGCGAACAGAGAAT 58.355 50.000 0.00 0.00 0.00 2.40
740 841 1.325640 CGTGATGGCGAACAGAGAATG 59.674 52.381 0.00 0.00 0.00 2.67
741 842 2.350522 GTGATGGCGAACAGAGAATGT 58.649 47.619 0.00 0.00 46.97 2.71
742 843 2.094894 GTGATGGCGAACAGAGAATGTG 59.905 50.000 0.00 0.00 43.00 3.21
744 845 0.035317 TGGCGAACAGAGAATGTGCT 59.965 50.000 0.00 0.00 43.00 4.40
745 846 1.275010 TGGCGAACAGAGAATGTGCTA 59.725 47.619 0.00 0.00 43.00 3.49
746 847 1.929836 GGCGAACAGAGAATGTGCTAG 59.070 52.381 0.00 0.00 43.00 3.42
748 849 2.675317 GCGAACAGAGAATGTGCTAGGT 60.675 50.000 0.00 0.00 43.00 3.08
753 854 5.171339 ACAGAGAATGTGCTAGGTTCATT 57.829 39.130 0.00 0.00 41.91 2.57
760 1343 3.346315 TGTGCTAGGTTCATTCATGTGG 58.654 45.455 0.00 0.00 0.00 4.17
777 1360 0.662619 TGGCGTGCAGAAAAACAGAG 59.337 50.000 0.00 0.00 0.00 3.35
780 1363 2.376032 GCGTGCAGAAAAACAGAGAAC 58.624 47.619 0.00 0.00 0.00 3.01
811 1401 4.766272 TGTCCTTCGGGAGAGAGG 57.234 61.111 0.00 0.00 46.04 3.69
814 1404 3.157949 CCTTCGGGAGAGAGGGGC 61.158 72.222 0.00 0.00 41.75 5.80
821 1411 2.757917 GAGAGAGGGGCGTCTGCT 60.758 66.667 0.00 0.00 42.25 4.24
823 1413 1.893919 GAGAGAGGGGCGTCTGCTTT 61.894 60.000 0.00 0.00 42.25 3.51
824 1414 1.003233 GAGAGGGGCGTCTGCTTTT 60.003 57.895 0.00 0.00 42.25 2.27
825 1415 0.249398 GAGAGGGGCGTCTGCTTTTA 59.751 55.000 0.00 0.00 42.25 1.52
826 1416 0.250513 AGAGGGGCGTCTGCTTTTAG 59.749 55.000 0.00 0.00 42.25 1.85
827 1417 1.369839 GAGGGGCGTCTGCTTTTAGC 61.370 60.000 0.00 0.00 42.82 3.09
844 1434 3.268603 CACAGTTGTGCGGCGACA 61.269 61.111 12.98 9.75 39.39 4.35
845 1435 2.512745 ACAGTTGTGCGGCGACAA 60.513 55.556 12.98 15.57 33.87 3.18
846 1436 2.249309 CAGTTGTGCGGCGACAAG 59.751 61.111 12.98 4.27 36.51 3.16
880 1470 2.586245 CGCATCTCCTTGGGCTCA 59.414 61.111 0.00 0.00 0.00 4.26
889 1479 3.965539 CTTGGGCTCAGCACCGGAG 62.966 68.421 9.46 0.00 35.47 4.63
891 1481 4.459089 GGGCTCAGCACCGGAGAC 62.459 72.222 9.46 0.00 39.79 3.36
905 1495 2.011540 GGAGACGAGTCACAAATCCC 57.988 55.000 5.99 0.00 0.00 3.85
906 1496 1.630148 GAGACGAGTCACAAATCCCG 58.370 55.000 5.99 0.00 0.00 5.14
907 1497 0.246635 AGACGAGTCACAAATCCCGG 59.753 55.000 5.99 0.00 0.00 5.73
908 1498 1.359459 GACGAGTCACAAATCCCGGC 61.359 60.000 0.00 0.00 0.00 6.13
909 1499 1.079127 CGAGTCACAAATCCCGGCT 60.079 57.895 0.00 0.00 0.00 5.52
910 1500 1.084370 CGAGTCACAAATCCCGGCTC 61.084 60.000 0.00 0.00 0.00 4.70
911 1501 1.079127 AGTCACAAATCCCGGCTCG 60.079 57.895 0.00 0.00 0.00 5.03
912 1502 1.375523 GTCACAAATCCCGGCTCGT 60.376 57.895 0.00 0.00 0.00 4.18
913 1503 1.079405 TCACAAATCCCGGCTCGTC 60.079 57.895 0.00 0.00 0.00 4.20
914 1504 1.079127 CACAAATCCCGGCTCGTCT 60.079 57.895 0.00 0.00 0.00 4.18
915 1505 0.673644 CACAAATCCCGGCTCGTCTT 60.674 55.000 0.00 0.00 0.00 3.01
916 1506 0.673644 ACAAATCCCGGCTCGTCTTG 60.674 55.000 0.00 0.00 0.00 3.02
917 1507 1.078426 AAATCCCGGCTCGTCTTGG 60.078 57.895 0.00 0.00 0.00 3.61
951 2858 0.517316 ACCATTGCTCGCGTTCTTTC 59.483 50.000 5.77 0.00 0.00 2.62
959 2866 0.859232 TCGCGTTCTTTCTGTTGCTC 59.141 50.000 5.77 0.00 0.00 4.26
981 2888 1.849829 GTGAAACGAAACGGCTTTTGG 59.150 47.619 0.00 0.00 0.00 3.28
982 2889 1.743958 TGAAACGAAACGGCTTTTGGA 59.256 42.857 5.52 0.00 0.00 3.53
1148 3084 4.829518 TCATCGCCGACGTGCTCG 62.830 66.667 6.63 6.63 42.54 5.03
1177 3113 3.717294 AAGGTACCAGCCCAGCCG 61.717 66.667 15.94 0.00 0.00 5.52
1407 3367 0.390124 AACTCGGCGTGTTCCTGTAA 59.610 50.000 20.27 0.00 0.00 2.41
1430 3390 4.090761 AGATTGGTGTTGCTCTGAAGAA 57.909 40.909 0.00 0.00 0.00 2.52
1499 3459 2.907042 CCAAGATATGGTACTCCCTCCC 59.093 54.545 0.00 0.00 44.85 4.30
1500 3460 2.563179 CAAGATATGGTACTCCCTCCCG 59.437 54.545 0.00 0.00 0.00 5.14
1501 3461 1.787676 AGATATGGTACTCCCTCCCGT 59.212 52.381 0.00 0.00 0.00 5.28
1502 3462 2.179424 AGATATGGTACTCCCTCCCGTT 59.821 50.000 0.00 0.00 0.00 4.44
1503 3463 2.077687 TATGGTACTCCCTCCCGTTC 57.922 55.000 0.00 0.00 0.00 3.95
1504 3464 0.042131 ATGGTACTCCCTCCCGTTCA 59.958 55.000 0.00 0.00 0.00 3.18
1505 3465 0.042131 TGGTACTCCCTCCCGTTCAT 59.958 55.000 0.00 0.00 0.00 2.57
1506 3466 1.201424 GGTACTCCCTCCCGTTCATT 58.799 55.000 0.00 0.00 0.00 2.57
1507 3467 1.558294 GGTACTCCCTCCCGTTCATTT 59.442 52.381 0.00 0.00 0.00 2.32
1508 3468 2.026542 GGTACTCCCTCCCGTTCATTTT 60.027 50.000 0.00 0.00 0.00 1.82
1509 3469 2.971901 ACTCCCTCCCGTTCATTTTT 57.028 45.000 0.00 0.00 0.00 1.94
1510 3470 4.323715 GGTACTCCCTCCCGTTCATTTTTA 60.324 45.833 0.00 0.00 0.00 1.52
1511 3471 4.586306 ACTCCCTCCCGTTCATTTTTAT 57.414 40.909 0.00 0.00 0.00 1.40
1512 3472 5.703730 ACTCCCTCCCGTTCATTTTTATA 57.296 39.130 0.00 0.00 0.00 0.98
1513 3473 6.069705 ACTCCCTCCCGTTCATTTTTATAA 57.930 37.500 0.00 0.00 0.00 0.98
1514 3474 6.120220 ACTCCCTCCCGTTCATTTTTATAAG 58.880 40.000 0.00 0.00 0.00 1.73
1515 3475 6.069705 TCCCTCCCGTTCATTTTTATAAGT 57.930 37.500 0.00 0.00 0.00 2.24
1516 3476 6.117488 TCCCTCCCGTTCATTTTTATAAGTC 58.883 40.000 0.00 0.00 0.00 3.01
1517 3477 5.883673 CCCTCCCGTTCATTTTTATAAGTCA 59.116 40.000 0.00 0.00 0.00 3.41
1518 3478 6.546034 CCCTCCCGTTCATTTTTATAAGTCAT 59.454 38.462 0.00 0.00 0.00 3.06
1519 3479 7.068226 CCCTCCCGTTCATTTTTATAAGTCATT 59.932 37.037 0.00 0.00 0.00 2.57
1520 3480 8.466798 CCTCCCGTTCATTTTTATAAGTCATTT 58.533 33.333 0.00 0.00 0.00 2.32
1521 3481 9.503427 CTCCCGTTCATTTTTATAAGTCATTTC 57.497 33.333 0.00 0.00 0.00 2.17
1522 3482 9.015367 TCCCGTTCATTTTTATAAGTCATTTCA 57.985 29.630 0.00 0.00 0.00 2.69
1523 3483 9.289303 CCCGTTCATTTTTATAAGTCATTTCAG 57.711 33.333 0.00 0.00 0.00 3.02
1541 3501 5.428496 TTCAGACAAGTGAAATTGAGCTG 57.572 39.130 0.00 5.01 37.41 4.24
1542 3502 4.454678 TCAGACAAGTGAAATTGAGCTGT 58.545 39.130 0.00 0.00 37.38 4.40
1543 3503 4.883585 TCAGACAAGTGAAATTGAGCTGTT 59.116 37.500 0.00 0.00 37.38 3.16
1544 3504 5.357878 TCAGACAAGTGAAATTGAGCTGTTT 59.642 36.000 0.00 0.00 37.38 2.83
1545 3505 6.038356 CAGACAAGTGAAATTGAGCTGTTTT 58.962 36.000 0.00 0.00 34.50 2.43
1546 3506 6.020121 CAGACAAGTGAAATTGAGCTGTTTTG 60.020 38.462 0.00 0.00 34.50 2.44
1547 3507 4.567959 ACAAGTGAAATTGAGCTGTTTTGC 59.432 37.500 0.00 0.00 34.20 3.68
1548 3508 4.389890 AGTGAAATTGAGCTGTTTTGCA 57.610 36.364 0.00 0.00 34.99 4.08
1549 3509 4.114794 AGTGAAATTGAGCTGTTTTGCAC 58.885 39.130 0.00 0.00 34.99 4.57
1550 3510 3.864583 GTGAAATTGAGCTGTTTTGCACA 59.135 39.130 0.00 0.00 34.99 4.57
1551 3511 4.329528 GTGAAATTGAGCTGTTTTGCACAA 59.670 37.500 0.00 0.00 44.68 3.33
1554 3514 3.523606 TTGAGCTGTTTTGCACAATGT 57.476 38.095 0.00 0.00 38.28 2.71
1555 3515 3.082698 TGAGCTGTTTTGCACAATGTC 57.917 42.857 0.00 0.00 33.87 3.06
1556 3516 2.689471 TGAGCTGTTTTGCACAATGTCT 59.311 40.909 0.00 0.00 33.87 3.41
1557 3517 3.047796 GAGCTGTTTTGCACAATGTCTG 58.952 45.455 0.00 0.00 33.87 3.51
1558 3518 2.689471 AGCTGTTTTGCACAATGTCTGA 59.311 40.909 0.00 0.00 33.87 3.27
1559 3519 3.130869 AGCTGTTTTGCACAATGTCTGAA 59.869 39.130 0.00 0.00 33.87 3.02
1560 3520 3.864583 GCTGTTTTGCACAATGTCTGAAA 59.135 39.130 0.00 0.00 33.87 2.69
1561 3521 4.259930 GCTGTTTTGCACAATGTCTGAAAC 60.260 41.667 0.00 7.59 33.87 2.78
1562 3522 4.814147 TGTTTTGCACAATGTCTGAAACA 58.186 34.783 11.27 11.27 43.51 2.83
1563 3523 9.926214 AGCTGTTTTGCACAATGTCTGAAACAT 62.926 37.037 14.04 3.38 42.06 2.71
1573 3533 3.585862 TGTCTGAAACATCTACGAAGCC 58.414 45.455 0.00 0.00 31.20 4.35
1574 3534 3.258372 TGTCTGAAACATCTACGAAGCCT 59.742 43.478 0.00 0.00 31.20 4.58
1575 3535 4.246458 GTCTGAAACATCTACGAAGCCTT 58.754 43.478 0.00 0.00 0.00 4.35
1576 3536 5.047590 TGTCTGAAACATCTACGAAGCCTTA 60.048 40.000 0.00 0.00 31.20 2.69
1577 3537 6.043411 GTCTGAAACATCTACGAAGCCTTAT 58.957 40.000 0.00 0.00 0.00 1.73
1578 3538 7.147966 TGTCTGAAACATCTACGAAGCCTTATA 60.148 37.037 0.00 0.00 31.20 0.98
1579 3539 7.705325 GTCTGAAACATCTACGAAGCCTTATAA 59.295 37.037 0.00 0.00 0.00 0.98
1580 3540 8.255206 TCTGAAACATCTACGAAGCCTTATAAA 58.745 33.333 0.00 0.00 0.00 1.40
1581 3541 8.780846 TGAAACATCTACGAAGCCTTATAAAA 57.219 30.769 0.00 0.00 0.00 1.52
1582 3542 9.221933 TGAAACATCTACGAAGCCTTATAAAAA 57.778 29.630 0.00 0.00 0.00 1.94
1585 3545 8.958119 ACATCTACGAAGCCTTATAAAAATGA 57.042 30.769 0.00 0.00 0.00 2.57
1586 3546 9.391006 ACATCTACGAAGCCTTATAAAAATGAA 57.609 29.630 0.00 0.00 0.00 2.57
1587 3547 9.651718 CATCTACGAAGCCTTATAAAAATGAAC 57.348 33.333 0.00 0.00 0.00 3.18
1588 3548 8.780846 TCTACGAAGCCTTATAAAAATGAACA 57.219 30.769 0.00 0.00 0.00 3.18
1589 3549 8.879759 TCTACGAAGCCTTATAAAAATGAACAG 58.120 33.333 0.00 0.00 0.00 3.16
1590 3550 7.681939 ACGAAGCCTTATAAAAATGAACAGA 57.318 32.000 0.00 0.00 0.00 3.41
1591 3551 7.752695 ACGAAGCCTTATAAAAATGAACAGAG 58.247 34.615 0.00 0.00 0.00 3.35
1592 3552 7.148239 ACGAAGCCTTATAAAAATGAACAGAGG 60.148 37.037 0.00 0.00 0.00 3.69
1593 3553 7.410120 AAGCCTTATAAAAATGAACAGAGGG 57.590 36.000 0.00 0.00 0.00 4.30
1594 3554 6.731467 AGCCTTATAAAAATGAACAGAGGGA 58.269 36.000 0.00 0.00 0.00 4.20
1595 3555 6.830838 AGCCTTATAAAAATGAACAGAGGGAG 59.169 38.462 0.00 0.00 0.00 4.30
1605 3565 9.981460 AAAATGAACAGAGGGAGTAATATTTCT 57.019 29.630 0.00 0.00 0.00 2.52
1606 3566 8.970859 AATGAACAGAGGGAGTAATATTTCTG 57.029 34.615 9.89 9.89 38.34 3.02
1609 3569 7.400339 TGAACAGAGGGAGTAATATTTCTGTCT 59.600 37.037 15.24 6.22 43.04 3.41
1615 3575 8.840200 AGGGAGTAATATTTCTGTCTACAAGA 57.160 34.615 0.00 0.00 0.00 3.02
1629 3589 8.953313 TCTGTCTACAAGACTATCATTCGTTTA 58.047 33.333 8.42 0.00 45.27 2.01
1630 3590 8.906636 TGTCTACAAGACTATCATTCGTTTAC 57.093 34.615 8.42 0.00 45.27 2.01
1632 3592 9.350357 GTCTACAAGACTATCATTCGTTTACAA 57.650 33.333 0.00 0.00 41.88 2.41
1633 3593 9.350357 TCTACAAGACTATCATTCGTTTACAAC 57.650 33.333 0.00 0.00 0.00 3.32
1634 3594 9.355215 CTACAAGACTATCATTCGTTTACAACT 57.645 33.333 0.00 0.00 0.00 3.16
1636 3596 9.136952 ACAAGACTATCATTCGTTTACAACTAC 57.863 33.333 0.00 0.00 0.00 2.73
1637 3597 9.135843 CAAGACTATCATTCGTTTACAACTACA 57.864 33.333 0.00 0.00 0.00 2.74
1638 3598 8.912787 AGACTATCATTCGTTTACAACTACAG 57.087 34.615 0.00 0.00 0.00 2.74
1639 3599 8.521176 AGACTATCATTCGTTTACAACTACAGT 58.479 33.333 0.00 0.00 0.00 3.55
1654 3614 7.376615 ACAACTACAGTACTAGTCATTTCACC 58.623 38.462 0.00 0.00 0.00 4.02
1665 3625 6.832384 ACTAGTCATTTCACCTCCTATCGTAA 59.168 38.462 0.00 0.00 0.00 3.18
1668 3628 5.749109 GTCATTTCACCTCCTATCGTAACAG 59.251 44.000 0.00 0.00 0.00 3.16
1794 3754 0.670546 ATCTCGCACCCAAAGACGTG 60.671 55.000 0.00 0.00 0.00 4.49
1800 3760 1.101049 CACCCAAAGACGTGCCACTT 61.101 55.000 0.00 0.00 0.00 3.16
1925 3905 3.805108 GCAGACAACTGACTGTTCTGGAT 60.805 47.826 13.12 0.00 46.03 3.41
1977 3959 4.215613 GTCAAGAAAGGCACCGAAATAAGT 59.784 41.667 0.00 0.00 0.00 2.24
2049 4031 2.076100 CAGCTGTACGATTCAGGCAAA 58.924 47.619 5.25 0.00 33.98 3.68
2054 4036 2.289382 TGTACGATTCAGGCAAAGCTCA 60.289 45.455 0.00 0.00 0.00 4.26
2124 4106 4.717313 GTTGCCCGTGTCCCTCCC 62.717 72.222 0.00 0.00 0.00 4.30
2193 4175 4.319249 GCGTTTTGCCACTCCAAC 57.681 55.556 0.00 0.00 37.76 3.77
2241 4229 5.673337 TTGTGTGTTTCTGAGCTTACATC 57.327 39.130 0.00 0.00 0.00 3.06
2243 4231 3.987868 GTGTGTTTCTGAGCTTACATCGA 59.012 43.478 0.00 0.00 0.00 3.59
2247 4235 4.627035 TGTTTCTGAGCTTACATCGACATG 59.373 41.667 0.00 0.00 35.92 3.21
2248 4236 2.814269 TCTGAGCTTACATCGACATGC 58.186 47.619 0.00 0.00 32.57 4.06
2277 4352 5.255687 TGGAGTGTTGTGATCATATGCTTT 58.744 37.500 0.00 0.00 0.00 3.51
2284 4359 6.883756 TGTTGTGATCATATGCTTTTGGTCTA 59.116 34.615 0.00 0.00 0.00 2.59
2290 4365 1.839424 ATGCTTTTGGTCTACAGGCC 58.161 50.000 0.00 0.00 0.00 5.19
2296 4371 1.578897 TTGGTCTACAGGCCTATGCA 58.421 50.000 3.98 0.00 40.13 3.96
2422 4497 2.248248 CAGGGTCAGAGTGTACTTCCA 58.752 52.381 0.00 0.00 0.00 3.53
2431 4506 2.731976 GAGTGTACTTCCAAAGAGTGCG 59.268 50.000 0.00 0.00 33.16 5.34
2512 4587 1.622232 GCGCCAAGCTTTCTGAAATC 58.378 50.000 2.88 0.00 44.04 2.17
2592 4667 9.787532 GAAATGTTAAGATTGCTTGCTACAATA 57.212 29.630 0.00 0.00 37.85 1.90
2599 4674 3.781079 TGCTTGCTACAATATTGGCAC 57.219 42.857 19.37 9.55 34.30 5.01
2601 4676 3.763360 TGCTTGCTACAATATTGGCACTT 59.237 39.130 19.37 0.78 34.30 3.16
2606 4681 4.107622 GCTACAATATTGGCACTTGCAAG 58.892 43.478 24.84 24.84 44.36 4.01
2624 4699 4.273005 CAAGTGTGCATATACGAAACCC 57.727 45.455 0.00 0.00 0.00 4.11
2635 4835 6.651643 GCATATACGAAACCCCATAACATACA 59.348 38.462 0.00 0.00 0.00 2.29
2650 4850 9.035607 CCATAACATACAAGTAGTCTAAGCAAG 57.964 37.037 0.00 0.00 0.00 4.01
2654 4854 3.839293 ACAAGTAGTCTAAGCAAGCTCG 58.161 45.455 0.00 0.00 0.00 5.03
2658 4859 0.739112 AGTCTAAGCAAGCTCGCTGC 60.739 55.000 0.00 0.00 42.89 5.25
2666 4867 1.212616 CAAGCTCGCTGCAGTATACC 58.787 55.000 16.64 0.00 45.94 2.73
2671 4872 0.396556 TCGCTGCAGTATACCCCTGA 60.397 55.000 16.64 0.00 31.38 3.86
2687 4889 6.773976 ACCCCTGATTGTGTTTGTTATATG 57.226 37.500 0.00 0.00 0.00 1.78
2799 5003 4.082571 CCCTCAGAGCATTTACAAAACCTG 60.083 45.833 0.00 0.00 0.00 4.00
2911 5140 6.034898 CCGAGGAACAAATTTGACAATTATGC 59.965 38.462 24.64 0.00 31.89 3.14
2941 5170 7.976175 TGCTCTACTGTAAGATAATCACAAGTG 59.024 37.037 0.00 0.00 37.43 3.16
3052 5446 0.327000 CATCCTCCCCTTCACCTCCT 60.327 60.000 0.00 0.00 0.00 3.69
3079 5473 8.533569 AAGAAAAGGAAAAACATAACAGAGGA 57.466 30.769 0.00 0.00 0.00 3.71
3083 5477 4.706962 AGGAAAAACATAACAGAGGATGGC 59.293 41.667 0.00 0.00 0.00 4.40
3129 5526 4.337274 TCCAAGCATAACTCTGCAATGATG 59.663 41.667 0.00 0.00 44.77 3.07
3211 5608 0.038744 CACAAAGGAGCTCCCATGGT 59.961 55.000 29.54 18.92 37.41 3.55
3212 5609 1.281867 CACAAAGGAGCTCCCATGGTA 59.718 52.381 29.54 0.00 37.41 3.25
3213 5610 1.282157 ACAAAGGAGCTCCCATGGTAC 59.718 52.381 29.54 1.26 37.41 3.34
3214 5611 0.541863 AAAGGAGCTCCCATGGTACG 59.458 55.000 29.54 0.00 37.41 3.67
3215 5612 0.325296 AAGGAGCTCCCATGGTACGA 60.325 55.000 29.54 0.00 37.41 3.43
3216 5613 0.105453 AGGAGCTCCCATGGTACGAT 60.105 55.000 29.54 3.28 37.41 3.73
3217 5614 0.759346 GGAGCTCCCATGGTACGATT 59.241 55.000 23.19 0.00 34.14 3.34
3228 5625 1.543802 TGGTACGATTTACGAACCGGT 59.456 47.619 0.00 0.00 45.77 5.28
3368 5765 5.529800 GCAGGGTAGAAACTCAACTTGTTAA 59.470 40.000 0.00 0.00 0.00 2.01
3374 5771 5.891451 AGAAACTCAACTTGTTAAGGCAAC 58.109 37.500 0.00 0.00 37.67 4.17
3473 5870 1.352017 TCAGGAAATTGCAGGAGCTCA 59.648 47.619 17.19 0.00 42.74 4.26
3539 5936 6.861065 TCTGGTTCTGTTGTAACTGAAATC 57.139 37.500 15.54 12.23 44.66 2.17
3548 5945 5.968848 TGTTGTAACTGAAATCTCGCAAAAC 59.031 36.000 0.00 0.00 0.00 2.43
3549 5946 6.183360 TGTTGTAACTGAAATCTCGCAAAACT 60.183 34.615 0.00 0.00 0.00 2.66
3550 5947 7.011576 TGTTGTAACTGAAATCTCGCAAAACTA 59.988 33.333 0.00 0.00 0.00 2.24
3551 5948 7.485418 TGTAACTGAAATCTCGCAAAACTAA 57.515 32.000 0.00 0.00 0.00 2.24
3577 5974 9.799106 ATAAGGTAAAAAGGACATCATATGGAG 57.201 33.333 2.13 0.00 33.60 3.86
3578 5975 6.064717 AGGTAAAAAGGACATCATATGGAGC 58.935 40.000 2.13 0.00 33.60 4.70
3579 5976 5.241728 GGTAAAAAGGACATCATATGGAGCC 59.758 44.000 2.13 0.14 33.60 4.70
3580 5977 4.524802 AAAAGGACATCATATGGAGCCA 57.475 40.909 2.13 0.00 33.60 4.75
3581 5978 4.736611 AAAGGACATCATATGGAGCCAT 57.263 40.909 7.25 7.25 40.19 4.40
3587 5985 3.887110 ACATCATATGGAGCCATGTGTTG 59.113 43.478 24.03 24.03 43.97 3.33
3631 6029 2.790433 GGCAAAGACCCACATAGACAA 58.210 47.619 0.00 0.00 0.00 3.18
3697 6095 3.430790 CCATGACGGACAGAGCTGAAATA 60.431 47.826 4.21 0.00 36.56 1.40
3751 6150 8.202137 TCCAAGAACCGAGTAAAGGAATAATAG 58.798 37.037 0.00 0.00 0.00 1.73
3882 6282 5.228635 GCAAAACTGCAATATCGAACATCAG 59.771 40.000 0.00 0.00 34.41 2.90
3889 6289 5.458779 TGCAATATCGAACATCAGAAGTACG 59.541 40.000 0.00 0.00 0.00 3.67
3919 6346 7.618117 TCAGTAACAATCATCCTGGTAGAAGTA 59.382 37.037 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 4.767255 CCAGCCACGACAGGAGCC 62.767 72.222 0.00 0.00 0.00 4.70
56 64 4.007644 CTGCTCCCAGCCACGACA 62.008 66.667 0.00 0.00 41.51 4.35
114 156 7.268586 CACCATACATCTCTTAAGCTTACAGT 58.731 38.462 5.45 1.83 0.00 3.55
115 157 6.703607 CCACCATACATCTCTTAAGCTTACAG 59.296 42.308 5.45 5.51 0.00 2.74
116 158 6.156256 ACCACCATACATCTCTTAAGCTTACA 59.844 38.462 5.45 0.00 0.00 2.41
117 159 6.583562 ACCACCATACATCTCTTAAGCTTAC 58.416 40.000 5.45 0.00 0.00 2.34
118 160 6.808321 ACCACCATACATCTCTTAAGCTTA 57.192 37.500 0.86 0.86 0.00 3.09
119 161 5.700402 ACCACCATACATCTCTTAAGCTT 57.300 39.130 3.48 3.48 0.00 3.74
120 162 5.700402 AACCACCATACATCTCTTAAGCT 57.300 39.130 0.00 0.00 0.00 3.74
129 171 2.092103 TGGGGCTAAACCACCATACATC 60.092 50.000 0.00 0.00 43.75 3.06
139 181 4.415783 CCACAGTGGGGCTAAACC 57.584 61.111 12.40 0.00 32.67 3.27
150 192 1.974236 CTGAAGAGTTCCTCCCACAGT 59.026 52.381 0.00 0.00 0.00 3.55
151 193 1.974236 ACTGAAGAGTTCCTCCCACAG 59.026 52.381 0.00 0.00 34.40 3.66
152 194 2.103153 ACTGAAGAGTTCCTCCCACA 57.897 50.000 0.00 0.00 0.00 4.17
154 196 3.076182 AGTCTACTGAAGAGTTCCTCCCA 59.924 47.826 0.00 0.00 33.88 4.37
155 197 3.445805 CAGTCTACTGAAGAGTTCCTCCC 59.554 52.174 3.99 0.00 46.59 4.30
158 200 3.501349 TGCAGTCTACTGAAGAGTTCCT 58.499 45.455 14.21 0.00 46.59 3.36
189 235 5.449553 AGCAGAAAATCCATACCTAAAGGG 58.550 41.667 0.20 0.00 40.27 3.95
192 238 7.340999 GGGTTTAGCAGAAAATCCATACCTAAA 59.659 37.037 4.20 0.00 39.12 1.85
193 239 6.831868 GGGTTTAGCAGAAAATCCATACCTAA 59.168 38.462 4.20 0.00 39.12 2.69
204 251 0.589223 CACGCGGGTTTAGCAGAAAA 59.411 50.000 12.47 0.00 34.19 2.29
212 259 2.203167 TGGCAACACGCGGGTTTA 60.203 55.556 26.87 11.43 46.17 2.01
243 321 3.126831 CGCAGGAACAAGCTAGGATAAG 58.873 50.000 0.00 0.00 0.00 1.73
249 327 1.354040 CAGTCGCAGGAACAAGCTAG 58.646 55.000 0.00 0.00 0.00 3.42
263 341 0.898320 AGAACAGGTGATCCCAGTCG 59.102 55.000 3.45 0.00 34.66 4.18
264 342 1.625818 ACAGAACAGGTGATCCCAGTC 59.374 52.381 3.45 0.00 34.66 3.51
273 351 3.040147 ACAATCGGTACAGAACAGGTG 57.960 47.619 0.00 0.00 0.00 4.00
276 354 3.399330 ACCAACAATCGGTACAGAACAG 58.601 45.455 0.00 0.00 34.02 3.16
287 365 1.066908 ACACCAGCAAACCAACAATCG 59.933 47.619 0.00 0.00 0.00 3.34
295 396 3.726291 ACACAATTACACCAGCAAACC 57.274 42.857 0.00 0.00 0.00 3.27
296 397 4.048504 GGAACACAATTACACCAGCAAAC 58.951 43.478 0.00 0.00 0.00 2.93
297 398 3.957497 AGGAACACAATTACACCAGCAAA 59.043 39.130 0.00 0.00 0.00 3.68
298 399 3.561143 AGGAACACAATTACACCAGCAA 58.439 40.909 0.00 0.00 0.00 3.91
299 400 3.146066 GAGGAACACAATTACACCAGCA 58.854 45.455 0.00 0.00 0.00 4.41
300 401 2.488153 GGAGGAACACAATTACACCAGC 59.512 50.000 0.00 0.00 0.00 4.85
301 402 3.750371 TGGAGGAACACAATTACACCAG 58.250 45.455 0.00 0.00 0.00 4.00
302 403 3.866703 TGGAGGAACACAATTACACCA 57.133 42.857 0.00 0.00 0.00 4.17
303 404 4.825085 TCTTTGGAGGAACACAATTACACC 59.175 41.667 0.00 0.00 0.00 4.16
304 405 6.039382 ACTTCTTTGGAGGAACACAATTACAC 59.961 38.462 0.00 0.00 0.00 2.90
305 406 6.126409 ACTTCTTTGGAGGAACACAATTACA 58.874 36.000 0.00 0.00 0.00 2.41
306 407 6.635030 ACTTCTTTGGAGGAACACAATTAC 57.365 37.500 0.00 0.00 0.00 1.89
307 408 6.460953 GCAACTTCTTTGGAGGAACACAATTA 60.461 38.462 0.00 0.00 35.51 1.40
308 409 5.682212 GCAACTTCTTTGGAGGAACACAATT 60.682 40.000 0.00 0.00 35.51 2.32
309 410 4.202151 GCAACTTCTTTGGAGGAACACAAT 60.202 41.667 0.00 0.00 35.51 2.71
310 411 3.130340 GCAACTTCTTTGGAGGAACACAA 59.870 43.478 0.00 0.00 35.51 3.33
311 412 2.687935 GCAACTTCTTTGGAGGAACACA 59.312 45.455 0.00 0.00 35.51 3.72
312 413 2.952310 AGCAACTTCTTTGGAGGAACAC 59.048 45.455 0.00 0.00 35.51 3.32
313 414 3.214328 GAGCAACTTCTTTGGAGGAACA 58.786 45.455 0.00 0.00 35.51 3.18
314 415 2.554462 GGAGCAACTTCTTTGGAGGAAC 59.446 50.000 0.00 0.00 35.51 3.62
315 416 2.174639 TGGAGCAACTTCTTTGGAGGAA 59.825 45.455 0.00 0.00 35.51 3.36
316 417 1.774254 TGGAGCAACTTCTTTGGAGGA 59.226 47.619 0.00 0.00 35.51 3.71
324 425 2.936919 TCATGTGTGGAGCAACTTCT 57.063 45.000 0.00 0.00 0.00 2.85
334 435 4.279169 CCCCAGCTTTATTATCATGTGTGG 59.721 45.833 0.00 0.00 0.00 4.17
335 436 4.261741 GCCCCAGCTTTATTATCATGTGTG 60.262 45.833 0.00 0.00 35.50 3.82
336 437 3.891366 GCCCCAGCTTTATTATCATGTGT 59.109 43.478 0.00 0.00 35.50 3.72
351 452 1.287815 GTAAACAAACGGCCCCAGC 59.712 57.895 0.00 0.00 38.76 4.85
394 495 0.037326 TGTCGCCACTTCCTAGCAAG 60.037 55.000 0.00 0.00 0.00 4.01
395 496 0.320421 GTGTCGCCACTTCCTAGCAA 60.320 55.000 0.00 0.00 38.61 3.91
407 508 0.109919 GACGGAAAAATGGTGTCGCC 60.110 55.000 0.00 0.00 37.90 5.54
412 513 2.050691 CGCAAAGACGGAAAAATGGTG 58.949 47.619 0.00 0.00 0.00 4.17
433 534 4.052518 AGTGGATGGGGCCAGCAC 62.053 66.667 4.39 0.00 38.95 4.40
436 537 2.273449 GTCAGTGGATGGGGCCAG 59.727 66.667 4.39 0.00 38.95 4.85
439 540 0.967380 CTTTGGTCAGTGGATGGGGC 60.967 60.000 0.00 0.00 0.00 5.80
440 541 0.967380 GCTTTGGTCAGTGGATGGGG 60.967 60.000 0.00 0.00 0.00 4.96
441 542 0.251297 TGCTTTGGTCAGTGGATGGG 60.251 55.000 0.00 0.00 0.00 4.00
446 547 2.507484 TCTCATTGCTTTGGTCAGTGG 58.493 47.619 0.00 0.00 0.00 4.00
447 548 4.380233 GGATTCTCATTGCTTTGGTCAGTG 60.380 45.833 0.00 0.00 0.00 3.66
449 550 3.129988 GGGATTCTCATTGCTTTGGTCAG 59.870 47.826 0.00 0.00 0.00 3.51
454 555 3.728864 CGTTCGGGATTCTCATTGCTTTG 60.729 47.826 0.00 0.00 0.00 2.77
457 558 1.656652 CGTTCGGGATTCTCATTGCT 58.343 50.000 0.00 0.00 0.00 3.91
458 559 0.028110 GCGTTCGGGATTCTCATTGC 59.972 55.000 0.00 0.00 0.00 3.56
460 561 0.463833 GGGCGTTCGGGATTCTCATT 60.464 55.000 0.00 0.00 0.00 2.57
461 562 1.146263 GGGCGTTCGGGATTCTCAT 59.854 57.895 0.00 0.00 0.00 2.90
462 563 1.956629 GAGGGCGTTCGGGATTCTCA 61.957 60.000 0.00 0.00 0.00 3.27
467 568 1.910580 AATGTGAGGGCGTTCGGGAT 61.911 55.000 0.00 0.00 0.00 3.85
468 569 2.119484 AAATGTGAGGGCGTTCGGGA 62.119 55.000 0.00 0.00 0.00 5.14
493 594 4.039245 TCTTCTCGGATGACAACTTGAGTT 59.961 41.667 0.00 0.00 39.12 3.01
494 595 3.574396 TCTTCTCGGATGACAACTTGAGT 59.426 43.478 0.00 0.00 0.00 3.41
495 596 4.179926 TCTTCTCGGATGACAACTTGAG 57.820 45.455 0.00 1.07 0.00 3.02
496 597 4.280929 TCTTCTTCTCGGATGACAACTTGA 59.719 41.667 0.00 0.00 0.00 3.02
497 598 4.560128 TCTTCTTCTCGGATGACAACTTG 58.440 43.478 0.00 0.00 0.00 3.16
498 599 4.873746 TCTTCTTCTCGGATGACAACTT 57.126 40.909 0.00 0.00 0.00 2.66
499 600 4.873746 TTCTTCTTCTCGGATGACAACT 57.126 40.909 0.00 0.00 0.00 3.16
500 601 5.924475 TTTTCTTCTTCTCGGATGACAAC 57.076 39.130 0.00 0.00 0.00 3.32
524 625 9.558396 TGGCAAATTTCAGTTTATCTTTTGAAT 57.442 25.926 0.00 0.00 30.45 2.57
525 626 8.954950 TGGCAAATTTCAGTTTATCTTTTGAA 57.045 26.923 0.00 0.00 0.00 2.69
526 627 9.206870 GATGGCAAATTTCAGTTTATCTTTTGA 57.793 29.630 0.00 0.00 0.00 2.69
527 628 8.445493 GGATGGCAAATTTCAGTTTATCTTTTG 58.555 33.333 0.00 0.00 0.00 2.44
528 629 7.331687 CGGATGGCAAATTTCAGTTTATCTTTT 59.668 33.333 0.00 0.00 0.00 2.27
529 630 6.813152 CGGATGGCAAATTTCAGTTTATCTTT 59.187 34.615 0.00 0.00 0.00 2.52
530 631 6.152661 TCGGATGGCAAATTTCAGTTTATCTT 59.847 34.615 0.00 0.00 0.00 2.40
531 632 5.652014 TCGGATGGCAAATTTCAGTTTATCT 59.348 36.000 0.00 0.00 0.00 1.98
532 633 5.890334 TCGGATGGCAAATTTCAGTTTATC 58.110 37.500 0.00 0.00 0.00 1.75
533 634 5.913137 TCGGATGGCAAATTTCAGTTTAT 57.087 34.783 0.00 0.00 0.00 1.40
534 635 5.713792 TTCGGATGGCAAATTTCAGTTTA 57.286 34.783 0.00 0.00 0.00 2.01
535 636 4.599047 TTCGGATGGCAAATTTCAGTTT 57.401 36.364 0.00 0.00 0.00 2.66
536 637 4.599047 TTTCGGATGGCAAATTTCAGTT 57.401 36.364 0.00 0.00 0.00 3.16
537 638 4.599047 TTTTCGGATGGCAAATTTCAGT 57.401 36.364 0.00 0.00 0.00 3.41
538 639 7.593875 TTTATTTTCGGATGGCAAATTTCAG 57.406 32.000 0.00 0.00 0.00 3.02
539 640 8.558973 AATTTATTTTCGGATGGCAAATTTCA 57.441 26.923 0.00 0.00 0.00 2.69
540 641 9.276397 CAAATTTATTTTCGGATGGCAAATTTC 57.724 29.630 0.00 0.00 33.92 2.17
541 642 8.791675 ACAAATTTATTTTCGGATGGCAAATTT 58.208 25.926 0.00 0.00 35.57 1.82
542 643 8.334263 ACAAATTTATTTTCGGATGGCAAATT 57.666 26.923 0.00 0.00 0.00 1.82
543 644 7.920160 ACAAATTTATTTTCGGATGGCAAAT 57.080 28.000 0.00 0.00 0.00 2.32
544 645 7.872993 TGTACAAATTTATTTTCGGATGGCAAA 59.127 29.630 0.00 0.00 0.00 3.68
545 646 7.378966 TGTACAAATTTATTTTCGGATGGCAA 58.621 30.769 0.00 0.00 0.00 4.52
546 647 6.925211 TGTACAAATTTATTTTCGGATGGCA 58.075 32.000 0.00 0.00 0.00 4.92
547 648 7.820044 TTGTACAAATTTATTTTCGGATGGC 57.180 32.000 5.64 0.00 0.00 4.40
563 664 9.959749 GAGGATGTTCAAGTTTAATTGTACAAA 57.040 29.630 13.23 0.00 41.69 2.83
564 665 8.286800 CGAGGATGTTCAAGTTTAATTGTACAA 58.713 33.333 11.41 11.41 41.69 2.41
565 666 7.572353 GCGAGGATGTTCAAGTTTAATTGTACA 60.572 37.037 5.17 5.17 42.29 2.90
566 667 6.741358 GCGAGGATGTTCAAGTTTAATTGTAC 59.259 38.462 0.00 0.00 32.79 2.90
567 668 6.401688 CGCGAGGATGTTCAAGTTTAATTGTA 60.402 38.462 0.00 0.00 0.00 2.41
568 669 5.616866 CGCGAGGATGTTCAAGTTTAATTGT 60.617 40.000 0.00 0.00 0.00 2.71
569 670 4.788100 CGCGAGGATGTTCAAGTTTAATTG 59.212 41.667 0.00 0.00 0.00 2.32
570 671 4.454504 ACGCGAGGATGTTCAAGTTTAATT 59.545 37.500 15.93 0.00 0.00 1.40
571 672 4.000988 ACGCGAGGATGTTCAAGTTTAAT 58.999 39.130 15.93 0.00 0.00 1.40
572 673 3.395639 ACGCGAGGATGTTCAAGTTTAA 58.604 40.909 15.93 0.00 0.00 1.52
573 674 2.991190 GACGCGAGGATGTTCAAGTTTA 59.009 45.455 15.93 0.00 0.00 2.01
574 675 1.798813 GACGCGAGGATGTTCAAGTTT 59.201 47.619 15.93 0.00 0.00 2.66
575 676 1.270094 TGACGCGAGGATGTTCAAGTT 60.270 47.619 15.93 0.00 0.00 2.66
576 677 0.317160 TGACGCGAGGATGTTCAAGT 59.683 50.000 15.93 0.00 0.00 3.16
577 678 0.716108 GTGACGCGAGGATGTTCAAG 59.284 55.000 15.93 0.00 0.00 3.02
578 679 0.317160 AGTGACGCGAGGATGTTCAA 59.683 50.000 15.93 0.00 0.00 2.69
579 680 0.388520 CAGTGACGCGAGGATGTTCA 60.389 55.000 15.93 0.00 0.00 3.18
580 681 0.109272 TCAGTGACGCGAGGATGTTC 60.109 55.000 15.93 0.00 0.00 3.18
581 682 0.317160 TTCAGTGACGCGAGGATGTT 59.683 50.000 15.93 0.00 0.00 2.71
582 683 0.388649 GTTCAGTGACGCGAGGATGT 60.389 55.000 15.93 0.00 0.00 3.06
583 684 0.109086 AGTTCAGTGACGCGAGGATG 60.109 55.000 15.93 6.45 0.00 3.51
584 685 0.603569 AAGTTCAGTGACGCGAGGAT 59.396 50.000 15.93 0.00 0.00 3.24
585 686 0.318699 CAAGTTCAGTGACGCGAGGA 60.319 55.000 15.93 0.00 0.00 3.71
586 687 1.891060 GCAAGTTCAGTGACGCGAGG 61.891 60.000 15.93 0.00 0.00 4.63
587 688 1.488957 GCAAGTTCAGTGACGCGAG 59.511 57.895 15.93 0.00 0.00 5.03
588 689 1.954146 GGCAAGTTCAGTGACGCGA 60.954 57.895 15.93 0.00 0.00 5.87
589 690 1.568612 ATGGCAAGTTCAGTGACGCG 61.569 55.000 3.53 3.53 0.00 6.01
590 691 1.438651 TATGGCAAGTTCAGTGACGC 58.561 50.000 0.00 0.00 0.00 5.19
591 692 4.481930 TTTTATGGCAAGTTCAGTGACG 57.518 40.909 0.00 0.00 0.00 4.35
625 726 2.672874 CCGATAAGTGTCACATGTGTGG 59.327 50.000 24.63 5.65 45.65 4.17
626 727 2.672874 CCCGATAAGTGTCACATGTGTG 59.327 50.000 24.63 6.81 46.91 3.82
627 728 2.301870 ACCCGATAAGTGTCACATGTGT 59.698 45.455 24.63 8.38 0.00 3.72
632 733 5.471556 TTTTAGACCCGATAAGTGTCACA 57.528 39.130 5.62 0.00 0.00 3.58
640 741 5.883115 TCACATGCAATTTTAGACCCGATAA 59.117 36.000 0.00 0.00 0.00 1.75
641 742 5.432645 TCACATGCAATTTTAGACCCGATA 58.567 37.500 0.00 0.00 0.00 2.92
642 743 4.269183 TCACATGCAATTTTAGACCCGAT 58.731 39.130 0.00 0.00 0.00 4.18
643 744 3.680490 TCACATGCAATTTTAGACCCGA 58.320 40.909 0.00 0.00 0.00 5.14
646 747 6.852853 CGATACATCACATGCAATTTTAGACC 59.147 38.462 0.00 0.00 0.00 3.85
648 749 7.495606 AGACGATACATCACATGCAATTTTAGA 59.504 33.333 0.00 0.00 0.00 2.10
654 755 5.640783 CCATAGACGATACATCACATGCAAT 59.359 40.000 0.00 0.00 0.00 3.56
660 761 3.636764 ACTGCCATAGACGATACATCACA 59.363 43.478 0.00 0.00 0.00 3.58
666 767 2.889045 TGGGTACTGCCATAGACGATAC 59.111 50.000 0.00 0.00 39.65 2.24
671 772 3.560636 ATGTTGGGTACTGCCATAGAC 57.439 47.619 0.00 0.00 39.65 2.59
673 774 4.096382 GTGAAATGTTGGGTACTGCCATAG 59.904 45.833 0.00 0.00 39.65 2.23
679 780 2.151202 AGCGTGAAATGTTGGGTACTG 58.849 47.619 0.00 0.00 0.00 2.74
684 785 5.977129 GGATAATAAAGCGTGAAATGTTGGG 59.023 40.000 0.00 0.00 0.00 4.12
698 799 3.403038 CTGGCTCCACGGGATAATAAAG 58.597 50.000 0.00 0.00 0.00 1.85
702 803 1.451936 GCTGGCTCCACGGGATAAT 59.548 57.895 0.00 0.00 0.00 1.28
703 804 2.908015 GCTGGCTCCACGGGATAA 59.092 61.111 0.00 0.00 0.00 1.75
704 805 3.536917 CGCTGGCTCCACGGGATA 61.537 66.667 0.00 0.00 0.00 2.59
708 809 4.457496 ATCACGCTGGCTCCACGG 62.457 66.667 12.78 0.00 0.00 4.94
709 810 3.190849 CATCACGCTGGCTCCACG 61.191 66.667 8.56 8.56 0.00 4.94
710 811 2.821366 CCATCACGCTGGCTCCAC 60.821 66.667 0.00 0.00 0.00 4.02
716 817 2.741985 TGTTCGCCATCACGCTGG 60.742 61.111 0.00 0.00 39.45 4.85
717 818 1.690283 CTCTGTTCGCCATCACGCTG 61.690 60.000 0.00 0.00 0.00 5.18
718 819 1.446792 CTCTGTTCGCCATCACGCT 60.447 57.895 0.00 0.00 0.00 5.07
720 821 1.325640 CATTCTCTGTTCGCCATCACG 59.674 52.381 0.00 0.00 0.00 4.35
724 825 1.089920 GCACATTCTCTGTTCGCCAT 58.910 50.000 0.00 0.00 35.29 4.40
725 826 0.035317 AGCACATTCTCTGTTCGCCA 59.965 50.000 0.00 0.00 35.29 5.69
726 827 1.929836 CTAGCACATTCTCTGTTCGCC 59.070 52.381 0.00 0.00 35.29 5.54
727 828 1.929836 CCTAGCACATTCTCTGTTCGC 59.070 52.381 0.00 0.00 35.29 4.70
728 829 3.238108 ACCTAGCACATTCTCTGTTCG 57.762 47.619 0.00 0.00 35.29 3.95
729 830 4.569943 TGAACCTAGCACATTCTCTGTTC 58.430 43.478 0.00 0.00 35.29 3.18
730 831 4.623932 TGAACCTAGCACATTCTCTGTT 57.376 40.909 0.00 0.00 35.29 3.16
731 832 4.833478 ATGAACCTAGCACATTCTCTGT 57.167 40.909 0.00 0.00 39.20 3.41
733 834 5.426689 TGAATGAACCTAGCACATTCTCT 57.573 39.130 22.54 2.24 45.46 3.10
734 835 5.587844 ACATGAATGAACCTAGCACATTCTC 59.412 40.000 22.54 9.53 45.46 2.87
736 837 5.449588 CCACATGAATGAACCTAGCACATTC 60.450 44.000 18.81 18.81 45.46 2.67
737 838 4.400251 CCACATGAATGAACCTAGCACATT 59.600 41.667 0.00 0.00 37.03 2.71
738 839 3.949754 CCACATGAATGAACCTAGCACAT 59.050 43.478 0.00 0.00 0.00 3.21
739 840 3.346315 CCACATGAATGAACCTAGCACA 58.654 45.455 0.00 0.00 0.00 4.57
740 841 2.098117 GCCACATGAATGAACCTAGCAC 59.902 50.000 0.00 0.00 0.00 4.40
741 842 2.368439 GCCACATGAATGAACCTAGCA 58.632 47.619 0.00 0.00 0.00 3.49
742 843 1.331756 CGCCACATGAATGAACCTAGC 59.668 52.381 0.00 0.00 0.00 3.42
744 845 2.355197 CACGCCACATGAATGAACCTA 58.645 47.619 0.00 0.00 0.00 3.08
745 846 1.167851 CACGCCACATGAATGAACCT 58.832 50.000 0.00 0.00 0.00 3.50
746 847 0.456653 GCACGCCACATGAATGAACC 60.457 55.000 0.00 0.00 0.00 3.62
748 849 0.522626 CTGCACGCCACATGAATGAA 59.477 50.000 0.00 0.00 0.00 2.57
753 854 1.028130 TTTTTCTGCACGCCACATGA 58.972 45.000 0.00 0.00 0.00 3.07
760 1343 2.376032 GTTCTCTGTTTTTCTGCACGC 58.624 47.619 0.00 0.00 0.00 5.34
780 1363 3.843240 GACAGAAAGCTCGGCGCG 61.843 66.667 0.00 0.00 45.59 6.86
810 1400 3.188011 GCTAAAAGCAGACGCCCC 58.812 61.111 0.00 0.00 41.89 5.80
828 1418 2.512745 TTGTCGCCGCACAACTGT 60.513 55.556 4.81 0.00 31.08 3.55
829 1419 2.249309 CTTGTCGCCGCACAACTG 59.751 61.111 4.81 0.00 32.70 3.16
830 1420 3.649986 GCTTGTCGCCGCACAACT 61.650 61.111 4.81 0.00 32.70 3.16
880 1470 2.282251 TGACTCGTCTCCGGTGCT 60.282 61.111 0.00 0.00 33.95 4.40
889 1479 1.359459 GCCGGGATTTGTGACTCGTC 61.359 60.000 2.18 0.00 0.00 4.20
890 1480 1.375523 GCCGGGATTTGTGACTCGT 60.376 57.895 2.18 0.00 0.00 4.18
891 1481 1.079127 AGCCGGGATTTGTGACTCG 60.079 57.895 2.18 0.00 0.00 4.18
892 1482 1.084370 CGAGCCGGGATTTGTGACTC 61.084 60.000 2.18 0.00 0.00 3.36
893 1483 1.079127 CGAGCCGGGATTTGTGACT 60.079 57.895 2.18 0.00 0.00 3.41
894 1484 1.359459 GACGAGCCGGGATTTGTGAC 61.359 60.000 2.18 0.00 0.00 3.67
895 1485 1.079405 GACGAGCCGGGATTTGTGA 60.079 57.895 2.18 0.00 0.00 3.58
896 1486 0.673644 AAGACGAGCCGGGATTTGTG 60.674 55.000 2.18 0.00 0.00 3.33
897 1487 0.673644 CAAGACGAGCCGGGATTTGT 60.674 55.000 2.18 0.00 0.00 2.83
898 1488 1.369091 CCAAGACGAGCCGGGATTTG 61.369 60.000 2.18 0.00 0.00 2.32
899 1489 1.078426 CCAAGACGAGCCGGGATTT 60.078 57.895 2.18 0.00 0.00 2.17
900 1490 2.584608 CCAAGACGAGCCGGGATT 59.415 61.111 2.18 0.00 0.00 3.01
901 1491 3.470888 CCCAAGACGAGCCGGGAT 61.471 66.667 2.18 0.00 41.62 3.85
903 1493 4.760047 CACCCAAGACGAGCCGGG 62.760 72.222 2.18 0.00 44.88 5.73
904 1494 4.760047 CCACCCAAGACGAGCCGG 62.760 72.222 0.00 0.00 0.00 6.13
907 1497 4.329545 TGGCCACCCAAGACGAGC 62.330 66.667 0.00 0.00 38.46 5.03
908 1498 1.541310 TAGTGGCCACCCAAGACGAG 61.541 60.000 32.29 0.00 44.33 4.18
909 1499 1.534476 TAGTGGCCACCCAAGACGA 60.534 57.895 32.29 4.82 44.33 4.20
910 1500 1.079127 CTAGTGGCCACCCAAGACG 60.079 63.158 32.29 9.04 44.33 4.18
911 1501 1.377333 GCTAGTGGCCACCCAAGAC 60.377 63.158 32.29 17.54 44.33 3.01
912 1502 3.077907 GCTAGTGGCCACCCAAGA 58.922 61.111 32.29 11.68 44.33 3.02
951 2858 0.934496 TTCGTTTCACCGAGCAACAG 59.066 50.000 0.00 0.00 38.23 3.16
959 2866 0.028374 AAAGCCGTTTCGTTTCACCG 59.972 50.000 0.00 0.00 0.00 4.94
1148 3084 4.752879 TACCTTGACGGCAGCGCC 62.753 66.667 2.29 9.20 46.75 6.53
1153 3089 2.345991 GCTGGTACCTTGACGGCA 59.654 61.111 14.36 0.00 35.61 5.69
1177 3113 3.894947 GAGCGGACGGAGAGAGGC 61.895 72.222 0.00 0.00 0.00 4.70
1178 3114 1.316706 AAAGAGCGGACGGAGAGAGG 61.317 60.000 0.00 0.00 0.00 3.69
1184 3120 3.387947 GGGGAAAGAGCGGACGGA 61.388 66.667 0.00 0.00 0.00 4.69
1187 3123 1.095600 GAATTGGGGAAAGAGCGGAC 58.904 55.000 0.00 0.00 0.00 4.79
1191 3127 2.095461 GGTCTGAATTGGGGAAAGAGC 58.905 52.381 0.00 0.00 0.00 4.09
1258 3201 1.447140 GCAGTCGATGTGCCGGTAA 60.447 57.895 1.90 0.00 34.67 2.85
1407 3367 5.426689 TCTTCAGAGCAACACCAATCTAT 57.573 39.130 0.00 0.00 0.00 1.98
1430 3390 2.103143 CGCCATCGTCGAAGAGCT 59.897 61.111 7.24 0.00 36.95 4.09
1492 3452 6.069705 ACTTATAAAAATGAACGGGAGGGA 57.930 37.500 0.00 0.00 0.00 4.20
1493 3453 5.883673 TGACTTATAAAAATGAACGGGAGGG 59.116 40.000 0.00 0.00 0.00 4.30
1494 3454 6.995511 TGACTTATAAAAATGAACGGGAGG 57.004 37.500 0.00 0.00 0.00 4.30
1495 3455 9.503427 GAAATGACTTATAAAAATGAACGGGAG 57.497 33.333 0.00 0.00 0.00 4.30
1496 3456 9.015367 TGAAATGACTTATAAAAATGAACGGGA 57.985 29.630 0.00 0.00 0.00 5.14
1497 3457 9.289303 CTGAAATGACTTATAAAAATGAACGGG 57.711 33.333 0.00 0.00 0.00 5.28
1510 3470 9.903682 CAATTTCACTTGTCTGAAATGACTTAT 57.096 29.630 7.69 0.00 45.91 1.73
1511 3471 9.119418 TCAATTTCACTTGTCTGAAATGACTTA 57.881 29.630 7.69 0.00 45.91 2.24
1512 3472 7.999679 TCAATTTCACTTGTCTGAAATGACTT 58.000 30.769 7.69 0.00 45.91 3.01
1513 3473 7.572523 TCAATTTCACTTGTCTGAAATGACT 57.427 32.000 7.69 0.00 45.91 3.41
1514 3474 6.361748 GCTCAATTTCACTTGTCTGAAATGAC 59.638 38.462 7.69 0.00 45.91 3.06
1515 3475 6.263842 AGCTCAATTTCACTTGTCTGAAATGA 59.736 34.615 7.69 7.05 45.91 2.57
1516 3476 6.362551 CAGCTCAATTTCACTTGTCTGAAATG 59.637 38.462 7.69 3.93 45.91 2.32
1518 3478 5.357878 ACAGCTCAATTTCACTTGTCTGAAA 59.642 36.000 12.20 0.00 42.83 2.69
1519 3479 4.883585 ACAGCTCAATTTCACTTGTCTGAA 59.116 37.500 12.20 0.00 34.76 3.02
1520 3480 4.454678 ACAGCTCAATTTCACTTGTCTGA 58.545 39.130 12.20 0.00 34.76 3.27
1521 3481 4.825546 ACAGCTCAATTTCACTTGTCTG 57.174 40.909 0.00 0.00 35.73 3.51
1522 3482 5.841957 AAACAGCTCAATTTCACTTGTCT 57.158 34.783 0.00 0.00 0.00 3.41
1523 3483 5.276536 GCAAAACAGCTCAATTTCACTTGTC 60.277 40.000 0.00 0.00 0.00 3.18
1524 3484 4.567959 GCAAAACAGCTCAATTTCACTTGT 59.432 37.500 0.00 0.00 0.00 3.16
1525 3485 4.567558 TGCAAAACAGCTCAATTTCACTTG 59.432 37.500 0.00 0.00 34.99 3.16
1526 3486 4.567959 GTGCAAAACAGCTCAATTTCACTT 59.432 37.500 0.00 0.00 34.99 3.16
1527 3487 4.114794 GTGCAAAACAGCTCAATTTCACT 58.885 39.130 0.00 0.00 34.99 3.41
1528 3488 3.864583 TGTGCAAAACAGCTCAATTTCAC 59.135 39.130 0.00 0.00 35.35 3.18
1529 3489 4.120792 TGTGCAAAACAGCTCAATTTCA 57.879 36.364 0.00 0.00 35.35 2.69
1530 3490 5.006941 ACATTGTGCAAAACAGCTCAATTTC 59.993 36.000 11.96 0.00 41.87 2.17
1531 3491 4.877251 ACATTGTGCAAAACAGCTCAATTT 59.123 33.333 11.96 5.37 41.87 1.82
1532 3492 4.444536 ACATTGTGCAAAACAGCTCAATT 58.555 34.783 11.96 4.12 41.87 2.32
1533 3493 4.053295 GACATTGTGCAAAACAGCTCAAT 58.947 39.130 9.58 9.58 41.87 2.57
1534 3494 3.130869 AGACATTGTGCAAAACAGCTCAA 59.869 39.130 0.00 5.99 41.87 3.02
1535 3495 2.689471 AGACATTGTGCAAAACAGCTCA 59.311 40.909 0.00 0.00 40.74 4.26
1536 3496 3.047796 CAGACATTGTGCAAAACAGCTC 58.952 45.455 0.00 0.00 40.74 4.09
1537 3497 2.689471 TCAGACATTGTGCAAAACAGCT 59.311 40.909 0.00 0.00 40.74 4.24
1538 3498 3.082698 TCAGACATTGTGCAAAACAGC 57.917 42.857 0.00 0.00 40.74 4.40
1539 3499 4.863689 TGTTTCAGACATTGTGCAAAACAG 59.136 37.500 12.56 0.00 34.89 3.16
1540 3500 4.814147 TGTTTCAGACATTGTGCAAAACA 58.186 34.783 12.56 12.56 33.98 2.83
1541 3501 5.971895 ATGTTTCAGACATTGTGCAAAAC 57.028 34.783 0.00 2.73 46.80 2.43
1552 3512 3.258372 AGGCTTCGTAGATGTTTCAGACA 59.742 43.478 0.00 0.00 43.71 3.41
1553 3513 3.851098 AGGCTTCGTAGATGTTTCAGAC 58.149 45.455 0.00 0.00 35.04 3.51
1554 3514 4.537135 AAGGCTTCGTAGATGTTTCAGA 57.463 40.909 0.00 0.00 35.04 3.27
1555 3515 8.420374 TTTATAAGGCTTCGTAGATGTTTCAG 57.580 34.615 1.30 0.00 35.04 3.02
1556 3516 8.780846 TTTTATAAGGCTTCGTAGATGTTTCA 57.219 30.769 1.30 0.00 35.04 2.69
1559 3519 9.391006 TCATTTTTATAAGGCTTCGTAGATGTT 57.609 29.630 1.30 0.00 35.04 2.71
1560 3520 8.958119 TCATTTTTATAAGGCTTCGTAGATGT 57.042 30.769 1.30 0.00 35.04 3.06
1561 3521 9.651718 GTTCATTTTTATAAGGCTTCGTAGATG 57.348 33.333 1.30 3.26 35.04 2.90
1562 3522 9.391006 TGTTCATTTTTATAAGGCTTCGTAGAT 57.609 29.630 1.30 0.00 35.04 1.98
1563 3523 8.780846 TGTTCATTTTTATAAGGCTTCGTAGA 57.219 30.769 1.30 0.00 0.00 2.59
1564 3524 8.879759 TCTGTTCATTTTTATAAGGCTTCGTAG 58.120 33.333 1.30 0.00 0.00 3.51
1565 3525 8.780846 TCTGTTCATTTTTATAAGGCTTCGTA 57.219 30.769 1.30 0.00 0.00 3.43
1566 3526 7.148239 CCTCTGTTCATTTTTATAAGGCTTCGT 60.148 37.037 1.30 0.00 0.00 3.85
1567 3527 7.189512 CCTCTGTTCATTTTTATAAGGCTTCG 58.810 38.462 1.30 0.00 0.00 3.79
1568 3528 7.339466 TCCCTCTGTTCATTTTTATAAGGCTTC 59.661 37.037 1.30 0.00 0.00 3.86
1569 3529 7.182060 TCCCTCTGTTCATTTTTATAAGGCTT 58.818 34.615 4.58 4.58 0.00 4.35
1570 3530 6.731467 TCCCTCTGTTCATTTTTATAAGGCT 58.269 36.000 0.00 0.00 0.00 4.58
1571 3531 6.603599 ACTCCCTCTGTTCATTTTTATAAGGC 59.396 38.462 0.00 0.00 0.00 4.35
1572 3532 9.681062 TTACTCCCTCTGTTCATTTTTATAAGG 57.319 33.333 0.00 0.00 0.00 2.69
1579 3539 9.981460 AGAAATATTACTCCCTCTGTTCATTTT 57.019 29.630 0.00 0.00 0.00 1.82
1580 3540 9.401058 CAGAAATATTACTCCCTCTGTTCATTT 57.599 33.333 4.94 0.00 0.00 2.32
1581 3541 8.552296 ACAGAAATATTACTCCCTCTGTTCATT 58.448 33.333 10.93 0.00 40.34 2.57
1582 3542 8.095452 ACAGAAATATTACTCCCTCTGTTCAT 57.905 34.615 10.93 0.00 40.34 2.57
1583 3543 7.400339 AGACAGAAATATTACTCCCTCTGTTCA 59.600 37.037 15.79 0.00 42.59 3.18
1584 3544 7.787028 AGACAGAAATATTACTCCCTCTGTTC 58.213 38.462 15.79 10.82 42.59 3.18
1585 3545 7.741554 AGACAGAAATATTACTCCCTCTGTT 57.258 36.000 15.79 6.95 42.59 3.16
1586 3546 7.839705 TGTAGACAGAAATATTACTCCCTCTGT 59.160 37.037 14.97 14.97 44.59 3.41
1587 3547 8.239038 TGTAGACAGAAATATTACTCCCTCTG 57.761 38.462 9.89 9.89 37.04 3.35
1588 3548 8.840200 TTGTAGACAGAAATATTACTCCCTCT 57.160 34.615 0.00 0.00 0.00 3.69
1589 3549 8.915036 TCTTGTAGACAGAAATATTACTCCCTC 58.085 37.037 0.00 0.00 0.00 4.30
1590 3550 8.697292 GTCTTGTAGACAGAAATATTACTCCCT 58.303 37.037 2.08 0.00 44.45 4.20
1591 3551 8.874744 GTCTTGTAGACAGAAATATTACTCCC 57.125 38.462 2.08 0.00 44.45 4.30
1606 3566 8.906636 TGTAAACGAATGATAGTCTTGTAGAC 57.093 34.615 0.00 0.00 45.38 2.59
1629 3589 7.232941 AGGTGAAATGACTAGTACTGTAGTTGT 59.767 37.037 5.39 9.05 33.18 3.32
1630 3590 7.603651 AGGTGAAATGACTAGTACTGTAGTTG 58.396 38.462 5.39 1.63 33.18 3.16
1632 3592 6.377712 GGAGGTGAAATGACTAGTACTGTAGT 59.622 42.308 5.39 1.12 35.88 2.73
1633 3593 6.603997 AGGAGGTGAAATGACTAGTACTGTAG 59.396 42.308 5.39 0.00 0.00 2.74
1634 3594 6.491383 AGGAGGTGAAATGACTAGTACTGTA 58.509 40.000 5.39 0.00 0.00 2.74
1635 3595 5.334421 AGGAGGTGAAATGACTAGTACTGT 58.666 41.667 5.39 1.39 0.00 3.55
1636 3596 5.923733 AGGAGGTGAAATGACTAGTACTG 57.076 43.478 5.39 0.00 0.00 2.74
1637 3597 6.487331 CGATAGGAGGTGAAATGACTAGTACT 59.513 42.308 0.00 0.00 0.00 2.73
1638 3598 6.262720 ACGATAGGAGGTGAAATGACTAGTAC 59.737 42.308 0.00 0.00 43.77 2.73
1639 3599 6.363065 ACGATAGGAGGTGAAATGACTAGTA 58.637 40.000 0.00 0.00 43.77 1.82
1654 3614 3.215151 TCTCTGGCTGTTACGATAGGAG 58.785 50.000 0.00 0.00 43.77 3.69
1665 3625 2.108952 AGGGTTTTGATTCTCTGGCTGT 59.891 45.455 0.00 0.00 0.00 4.40
1668 3628 1.203287 GCAGGGTTTTGATTCTCTGGC 59.797 52.381 0.00 0.00 0.00 4.85
1794 3754 0.032403 TGCTGTCAATTGCAAGTGGC 59.968 50.000 23.58 23.58 45.13 5.01
1797 3757 2.026641 AGTGTGCTGTCAATTGCAAGT 58.973 42.857 4.94 0.00 41.10 3.16
1800 3760 1.677942 TCAGTGTGCTGTCAATTGCA 58.322 45.000 0.00 1.49 43.05 4.08
1806 3766 3.396560 CAGATCTTTCAGTGTGCTGTCA 58.603 45.455 0.00 0.00 43.05 3.58
1925 3905 5.010708 TGGCCAGTGGATCTACATAGATA 57.989 43.478 15.20 0.00 42.79 1.98
1977 3959 0.395312 GGTGGACAAAGTTCTCCGGA 59.605 55.000 2.93 2.93 0.00 5.14
2124 4106 1.874019 CTCGACCTGATCAACGGCG 60.874 63.158 4.80 4.80 0.00 6.46
2193 4175 4.585162 AGACTTACTGATAGATGAACCCCG 59.415 45.833 0.00 0.00 0.00 5.73
2241 4229 1.603802 ACACTCCAGTTTTGCATGTCG 59.396 47.619 0.00 0.00 0.00 4.35
2243 4231 2.760092 ACAACACTCCAGTTTTGCATGT 59.240 40.909 5.66 0.00 38.80 3.21
2247 4235 3.066621 TGATCACAACACTCCAGTTTTGC 59.933 43.478 5.66 0.00 38.80 3.68
2248 4236 4.898829 TGATCACAACACTCCAGTTTTG 57.101 40.909 4.40 4.40 40.47 2.44
2277 4352 1.209504 GTGCATAGGCCTGTAGACCAA 59.790 52.381 17.99 0.00 40.13 3.67
2284 4359 1.304282 CAAGGGTGCATAGGCCTGT 59.696 57.895 17.99 5.57 40.13 4.00
2290 4365 1.454479 CCTGCCCAAGGGTGCATAG 60.454 63.158 7.05 0.00 43.15 2.23
2431 4506 3.193691 TCTCCTTCAACCTCGACTCATTC 59.806 47.826 0.00 0.00 0.00 2.67
2512 4587 1.400142 TGTTCGACACTTGCCTGTTTG 59.600 47.619 0.00 0.00 0.00 2.93
2566 4641 8.693542 ATTGTAGCAAGCAATCTTAACATTTC 57.306 30.769 0.00 0.00 31.63 2.17
2606 4681 2.634600 TGGGGTTTCGTATATGCACAC 58.365 47.619 0.00 0.00 0.00 3.82
2609 4684 5.037383 TGTTATGGGGTTTCGTATATGCA 57.963 39.130 0.00 0.00 0.00 3.96
2623 4698 7.497595 TGCTTAGACTACTTGTATGTTATGGG 58.502 38.462 0.00 0.00 0.00 4.00
2624 4699 8.942338 TTGCTTAGACTACTTGTATGTTATGG 57.058 34.615 0.00 0.00 0.00 2.74
2635 4835 2.494073 AGCGAGCTTGCTTAGACTACTT 59.506 45.455 23.41 0.00 44.46 2.24
2650 4850 1.301009 GGGGTATACTGCAGCGAGC 60.301 63.158 15.27 8.68 45.96 5.03
2654 4854 2.158755 ACAATCAGGGGTATACTGCAGC 60.159 50.000 15.27 0.00 35.94 5.25
2658 4859 5.253330 ACAAACACAATCAGGGGTATACTG 58.747 41.667 2.25 0.00 37.30 2.74
2666 4867 6.206395 TGCATATAACAAACACAATCAGGG 57.794 37.500 0.00 0.00 0.00 4.45
2911 5140 9.371136 TGTGATTATCTTACAGTAGAGCAAAAG 57.629 33.333 0.00 0.00 0.00 2.27
2941 5170 6.589523 CCTTCGATGTATCCTCATCATTTCTC 59.410 42.308 7.32 0.00 42.82 2.87
3028 5422 0.681243 GTGAAGGGGAGGATGCAACC 60.681 60.000 4.51 4.51 0.00 3.77
3083 5477 1.960040 TAGTCAGATGCACCAGGGCG 61.960 60.000 0.00 0.00 36.28 6.13
3129 5526 5.525012 TGCATGTTATAGATGTGAAGTGAGC 59.475 40.000 0.00 0.00 0.00 4.26
3132 5529 7.064966 TCTGTTGCATGTTATAGATGTGAAGTG 59.935 37.037 0.00 0.00 0.00 3.16
3136 5533 7.769970 TGAATCTGTTGCATGTTATAGATGTGA 59.230 33.333 8.45 0.00 0.00 3.58
3137 5534 7.922837 TGAATCTGTTGCATGTTATAGATGTG 58.077 34.615 8.45 0.00 0.00 3.21
3211 5608 4.034048 GTCTCTACCGGTTCGTAAATCGTA 59.966 45.833 15.04 0.00 37.29 3.43
3212 5609 3.009723 TCTCTACCGGTTCGTAAATCGT 58.990 45.455 15.04 0.00 37.29 3.73
3213 5610 3.357897 GTCTCTACCGGTTCGTAAATCG 58.642 50.000 15.04 0.00 38.76 3.34
3214 5611 3.357897 CGTCTCTACCGGTTCGTAAATC 58.642 50.000 15.04 0.00 0.00 2.17
3215 5612 2.098117 CCGTCTCTACCGGTTCGTAAAT 59.902 50.000 15.04 0.00 40.59 1.40
3216 5613 1.468520 CCGTCTCTACCGGTTCGTAAA 59.531 52.381 15.04 0.00 40.59 2.01
3217 5614 1.086696 CCGTCTCTACCGGTTCGTAA 58.913 55.000 15.04 0.00 40.59 3.18
3228 5625 0.729116 CGAAGCCGTAACCGTCTCTA 59.271 55.000 0.00 0.00 0.00 2.43
3368 5765 1.226945 GCGCAAAACACTGTTGCCT 60.227 52.632 0.30 0.00 46.98 4.75
3383 5780 2.059541 AGAGTTCTAGAACGTTTGCGC 58.940 47.619 25.92 0.00 45.50 6.09
3397 5794 5.927115 CGGTAAGGCCATCTAATTAGAGTTC 59.073 44.000 19.51 10.62 35.50 3.01
3473 5870 2.821969 CAGTTAGCTGCATTTTCTGGGT 59.178 45.455 1.02 0.00 35.77 4.51
3539 5936 8.508875 TCCTTTTTACCTTATTAGTTTTGCGAG 58.491 33.333 0.00 0.00 0.00 5.03
3551 5948 9.799106 CTCCATATGATGTCCTTTTTACCTTAT 57.201 33.333 3.65 0.00 0.00 1.73
3563 5960 3.079578 CACATGGCTCCATATGATGTCC 58.920 50.000 3.65 0.59 33.04 4.02
3574 5971 3.642938 TGGTACAACACATGGCTCC 57.357 52.632 0.00 0.00 31.92 4.70
3580 5977 8.722177 TCCTTTTTGAAGGTTGGTACAACACAT 61.722 37.037 13.40 0.00 40.60 3.21
3581 5978 7.476440 TCCTTTTTGAAGGTTGGTACAACACA 61.476 38.462 13.40 7.77 40.60 3.72
3587 5985 5.451381 CCTGTTCCTTTTTGAAGGTTGGTAC 60.451 44.000 5.20 0.00 40.81 3.34
3631 6029 2.026262 ACTCATATTTGTGGCCGACCTT 60.026 45.455 0.00 0.00 36.63 3.50
3697 6095 6.459435 GCTTTGTTTAAATTGTTGCCAATGGT 60.459 34.615 0.00 0.00 40.42 3.55
3751 6150 8.903820 AGTGATTATCTTATTGCCTGGTTTTAC 58.096 33.333 0.00 0.00 0.00 2.01
3882 6282 8.753175 GGATGATTGTTACTGATTACGTACTTC 58.247 37.037 0.00 0.00 0.00 3.01
3889 6289 8.421784 TCTACCAGGATGATTGTTACTGATTAC 58.578 37.037 0.00 0.00 39.69 1.89
3919 6346 3.054361 GTGGGGAAACAGTGATACCTCAT 60.054 47.826 0.00 0.00 33.57 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.