Multiple sequence alignment - TraesCS3D01G356700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G356700 chr3D 100.000 4146 0 0 1 4146 469152151 469156296 0.000000e+00 7657.0
1 TraesCS3D01G356700 chr3B 89.125 3724 240 74 535 4146 623148341 623152011 0.000000e+00 4481.0
2 TraesCS3D01G356700 chr3B 89.925 536 40 7 1 531 623147649 623148175 0.000000e+00 678.0
3 TraesCS3D01G356700 chr3A 87.135 2635 172 59 1595 4146 611701463 611704013 0.000000e+00 2833.0
4 TraesCS3D01G356700 chr3A 93.438 701 29 6 914 1597 611700602 611701302 0.000000e+00 1024.0
5 TraesCS3D01G356700 chr3A 87.500 320 36 3 1 320 611700154 611700469 2.360000e-97 366.0
6 TraesCS3D01G356700 chr2A 89.023 829 53 15 1141 1958 675938172 675938973 0.000000e+00 992.0
7 TraesCS3D01G356700 chr5A 91.271 653 38 11 1046 1695 503647191 503647827 0.000000e+00 872.0
8 TraesCS3D01G356700 chr5A 91.500 200 15 2 676 874 272142717 272142915 1.470000e-69 274.0
9 TraesCS3D01G356700 chr2D 91.626 203 15 2 676 877 629270233 629270032 3.160000e-71 279.0
10 TraesCS3D01G356700 chr4D 91.500 200 14 3 677 875 37603948 37604145 5.280000e-69 272.0
11 TraesCS3D01G356700 chr4D 86.087 115 16 0 1338 1452 363661723 363661837 1.560000e-24 124.0
12 TraesCS3D01G356700 chr6B 91.045 201 16 2 676 875 641301052 641300853 1.900000e-68 270.0
13 TraesCS3D01G356700 chr7B 90.291 206 16 4 676 879 123738940 123738737 2.460000e-67 267.0
14 TraesCS3D01G356700 chr2B 90.594 202 17 2 676 876 723426011 723426211 2.460000e-67 267.0
15 TraesCS3D01G356700 chr2B 94.737 38 2 0 503 540 532089512 532089475 4.480000e-05 60.2
16 TraesCS3D01G356700 chr2B 88.636 44 5 0 318 361 701755722 701755679 2.000000e-03 54.7
17 TraesCS3D01G356700 chr7D 89.904 208 17 4 676 881 505591699 505591494 8.840000e-67 265.0
18 TraesCS3D01G356700 chr1D 88.889 216 19 5 676 889 486402628 486402840 1.140000e-65 261.0
19 TraesCS3D01G356700 chr4B 86.957 115 15 0 1338 1452 449014435 449014549 3.360000e-26 130.0
20 TraesCS3D01G356700 chr4A 84.426 122 17 2 1338 1457 101759026 101758905 7.280000e-23 119.0
21 TraesCS3D01G356700 chr5D 100.000 29 0 0 499 527 69426567 69426539 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G356700 chr3D 469152151 469156296 4145 False 7657.000000 7657 100.000000 1 4146 1 chr3D.!!$F1 4145
1 TraesCS3D01G356700 chr3B 623147649 623152011 4362 False 2579.500000 4481 89.525000 1 4146 2 chr3B.!!$F1 4145
2 TraesCS3D01G356700 chr3A 611700154 611704013 3859 False 1407.666667 2833 89.357667 1 4146 3 chr3A.!!$F1 4145
3 TraesCS3D01G356700 chr2A 675938172 675938973 801 False 992.000000 992 89.023000 1141 1958 1 chr2A.!!$F1 817
4 TraesCS3D01G356700 chr5A 503647191 503647827 636 False 872.000000 872 91.271000 1046 1695 1 chr5A.!!$F2 649

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
670 882 0.463654 GGAGTGGTGTGTGTGCAAGA 60.464 55.0 0.0 0.0 0.0 3.02 F
1950 2358 0.250597 ACCGCCCAGAGGTAAAACAC 60.251 55.0 0.0 0.0 40.8 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2150 2563 0.531532 GCTCACCAGATCCATCCACG 60.532 60.0 0.0 0.0 0.00 4.94 R
3746 4233 0.039764 GGCCAAGCCTAACCCTTTCT 59.960 55.0 0.0 0.0 46.69 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 8.579006 GGTTTGAAATCATGGCTATATTCATCA 58.421 33.333 6.12 0.00 0.00 3.07
58 59 8.333984 TCATGGCTATATTCATCATGGAGAAAT 58.666 33.333 5.13 4.11 36.72 2.17
67 68 8.991783 ATTCATCATGGAGAAATAGATTGTGT 57.008 30.769 5.13 0.00 0.00 3.72
89 90 9.374711 TGTGTATCCCATACATCAACTCTATTA 57.625 33.333 0.00 0.00 46.39 0.98
95 96 9.778741 TCCCATACATCAACTCTATTAAATGTC 57.221 33.333 0.00 0.00 0.00 3.06
107 108 6.582636 TCTATTAAATGTCGAGGATTGCACT 58.417 36.000 0.00 0.00 0.00 4.40
109 110 2.479566 AATGTCGAGGATTGCACTGT 57.520 45.000 0.00 0.00 0.00 3.55
177 183 5.611374 AGATCATTTTATGGGTGACGTAGG 58.389 41.667 0.00 0.00 0.00 3.18
186 192 1.343465 GGGTGACGTAGGGACCATATG 59.657 57.143 3.80 3.80 34.96 1.78
274 280 7.923878 TCATAACGCACATAGACATAAGCTAAA 59.076 33.333 0.00 0.00 0.00 1.85
297 303 0.943835 TGACGTCACAATGGAGCACG 60.944 55.000 15.76 0.00 36.54 5.34
391 434 1.338769 GCCATCGGTTAGACCAACACT 60.339 52.381 0.00 0.00 38.47 3.55
404 447 8.440833 GTTAGACCAACACTGTATGATGTTTAC 58.559 37.037 0.00 0.00 36.92 2.01
410 453 6.956299 ACACTGTATGATGTTTACGTTACC 57.044 37.500 0.00 0.00 0.00 2.85
426 469 3.557508 GTTACCGTCAAATTTGTTCCCG 58.442 45.455 17.47 14.27 0.00 5.14
537 742 9.661563 ACGTCTTACATTTTGATATGAAGGTAA 57.338 29.630 0.00 0.00 32.95 2.85
670 882 0.463654 GGAGTGGTGTGTGTGCAAGA 60.464 55.000 0.00 0.00 0.00 3.02
674 886 1.152963 GGTGTGTGTGCAAGAGGGT 60.153 57.895 0.00 0.00 0.00 4.34
675 887 1.447317 GGTGTGTGTGCAAGAGGGTG 61.447 60.000 0.00 0.00 0.00 4.61
693 905 2.178521 CGTCGAGTTCGGGTGAGG 59.821 66.667 1.26 0.00 40.29 3.86
703 915 1.141881 CGGGTGAGGAGGTGATTCG 59.858 63.158 0.00 0.00 0.00 3.34
706 918 0.895530 GGTGAGGAGGTGATTCGTCA 59.104 55.000 0.00 0.00 39.04 4.35
733 945 6.618287 TTTTCTTCGATGACTGTTGTGATT 57.382 33.333 0.00 0.00 0.00 2.57
737 949 3.727726 TCGATGACTGTTGTGATTGTGT 58.272 40.909 0.00 0.00 0.00 3.72
752 964 3.680786 TGTCGGAGGCAGGTGACG 61.681 66.667 0.00 0.00 36.97 4.35
753 965 4.436998 GTCGGAGGCAGGTGACGG 62.437 72.222 0.00 0.00 0.00 4.79
779 991 3.578282 TGGTGTCAAGCTCAGAGATGTTA 59.422 43.478 0.00 0.00 0.00 2.41
806 1018 8.015087 TGCTATCTTTTCAGTTTTGTTATGTCG 58.985 33.333 0.00 0.00 0.00 4.35
855 1067 8.413229 TGATCTTTATGATATGAACGAGACACA 58.587 33.333 0.00 0.00 35.14 3.72
866 1078 5.972935 TGAACGAGACACATATTACCATGT 58.027 37.500 0.00 0.00 39.76 3.21
867 1079 7.102847 TGAACGAGACACATATTACCATGTA 57.897 36.000 0.00 0.00 37.02 2.29
998 1213 0.463833 CCCTGACGCTGGTATTTCCC 60.464 60.000 0.00 0.00 34.77 3.97
1122 1344 2.050442 CGACCGGCCAAAACAAGC 60.050 61.111 0.00 0.00 0.00 4.01
1208 1439 2.371510 CTCAGATTCTCCTCCAATCCCC 59.628 54.545 0.00 0.00 31.52 4.81
1228 1459 3.771160 CCCTCCCAGTCGGTTCCG 61.771 72.222 4.74 4.74 0.00 4.30
1279 1510 5.048782 TGCCACTGTGAGTGTGATTTTAATC 60.049 40.000 9.86 0.00 44.50 1.75
1457 1691 2.234661 TGATTCTGCACCAGGTAGACAG 59.765 50.000 9.32 9.32 38.02 3.51
1485 1728 4.363138 TGCGCTTGATAGAGATTGTGTAG 58.637 43.478 9.73 0.00 0.00 2.74
1486 1729 4.142160 TGCGCTTGATAGAGATTGTGTAGT 60.142 41.667 9.73 0.00 0.00 2.73
1487 1730 5.067283 TGCGCTTGATAGAGATTGTGTAGTA 59.933 40.000 9.73 0.00 0.00 1.82
1655 2061 6.672147 AGTAGCATTTCAATGTGTTCAGTTC 58.328 36.000 1.59 0.00 38.65 3.01
1659 2065 5.628193 GCATTTCAATGTGTTCAGTTCAGAG 59.372 40.000 1.59 0.00 38.65 3.35
1660 2066 6.732154 CATTTCAATGTGTTCAGTTCAGAGT 58.268 36.000 0.00 0.00 0.00 3.24
1661 2067 6.757897 TTTCAATGTGTTCAGTTCAGAGTT 57.242 33.333 0.00 0.00 0.00 3.01
1721 2127 6.260050 CGTTAATCAATTCCCTTGCTAGCTTA 59.740 38.462 17.23 3.02 34.66 3.09
1796 2204 3.053320 ACCATCAGGATTTCCCCTTCTTC 60.053 47.826 0.00 0.00 38.69 2.87
1797 2205 3.203934 CCATCAGGATTTCCCCTTCTTCT 59.796 47.826 0.00 0.00 36.89 2.85
1798 2206 4.459330 CATCAGGATTTCCCCTTCTTCTC 58.541 47.826 0.00 0.00 33.38 2.87
1843 2251 1.593196 TGTGCAAAGTCGAGGAAAGG 58.407 50.000 0.00 0.00 0.00 3.11
1847 2255 3.253432 GTGCAAAGTCGAGGAAAGGAAAT 59.747 43.478 0.00 0.00 0.00 2.17
1899 2307 5.638783 CAGATTGAAGCCTTGAAAGATGTC 58.361 41.667 0.00 0.00 0.00 3.06
1902 2310 2.224523 TGAAGCCTTGAAAGATGTCGGT 60.225 45.455 0.00 0.00 0.00 4.69
1950 2358 0.250597 ACCGCCCAGAGGTAAAACAC 60.251 55.000 0.00 0.00 40.80 3.32
1968 2376 7.623268 AAAACACGAGATAATTTGTCTTTGC 57.377 32.000 0.00 0.00 0.00 3.68
1975 2388 7.041098 ACGAGATAATTTGTCTTTGCTGTTCTT 60.041 33.333 0.00 0.00 0.00 2.52
1988 2401 6.899393 TTGCTGTTCTTTCATGGAGTTATT 57.101 33.333 0.00 0.00 0.00 1.40
2023 2436 2.547218 GGAGTCCGACTGTTGTGCTTTA 60.547 50.000 5.57 0.00 0.00 1.85
2150 2563 1.676967 CCTGGCAAGGGACAAGCTC 60.677 63.158 0.00 0.00 40.27 4.09
2165 2578 0.689080 AGCTCGTGGATGGATCTGGT 60.689 55.000 0.00 0.00 0.00 4.00
2313 2729 8.603242 TTACCACTCTCTTTTGTAATCAACTC 57.397 34.615 0.00 0.00 32.93 3.01
2334 2750 2.620251 TGTATGTATGCTGACTGCCC 57.380 50.000 1.50 0.00 42.00 5.36
2369 2785 5.123227 GTGGATGAACCTTCGAAATATGGA 58.877 41.667 8.07 0.00 39.86 3.41
2453 2869 3.689347 TGTAGGCAACAAGATCAATGCT 58.311 40.909 10.49 0.00 38.79 3.79
2540 2956 0.321653 AGGTCTTTCCGCGAATTGCT 60.322 50.000 8.23 0.00 43.27 3.91
2567 2983 0.905357 AGAAGCTCTACGCCATGGTT 59.095 50.000 14.67 3.20 40.39 3.67
2612 3028 0.034089 GCCAGCCAAGGGACTACATT 60.034 55.000 0.00 0.00 38.49 2.71
2708 3124 1.298859 GGAATGTCCTGGTGCACGAC 61.299 60.000 11.45 13.16 32.53 4.34
2750 3166 1.065199 TGCCTGATTGGTCCTGATGTC 60.065 52.381 0.00 0.00 38.35 3.06
2906 3322 2.663602 GGCACGCATAGAGAATATGACG 59.336 50.000 0.00 5.05 33.79 4.35
2921 3337 2.461300 TGACGATCCTGGGAGAAGAT 57.539 50.000 0.00 0.00 0.00 2.40
2975 3391 0.736053 GTGTTGTTCTCCCGCACAAA 59.264 50.000 0.00 0.00 34.70 2.83
3056 3472 3.234386 GCTTTTAGGAACGATGTTGTGC 58.766 45.455 0.00 0.00 0.00 4.57
3100 3525 8.807948 AACAGCTTAATATATGTGGAACTTGT 57.192 30.769 0.00 0.00 38.04 3.16
3161 3586 4.039004 TCATTTCCAGTGTTGTTTCCCATG 59.961 41.667 0.00 0.00 0.00 3.66
3200 3625 5.510179 GCTTTAGTATAGCGTTGTGGGGATA 60.510 44.000 0.00 0.00 0.00 2.59
3225 3650 7.448748 TCAGCCTGTTTACTTTATTTTCTCC 57.551 36.000 0.00 0.00 0.00 3.71
3237 3680 6.990349 ACTTTATTTTCTCCGACACAGAAAGA 59.010 34.615 0.00 0.00 40.22 2.52
3285 3734 7.636150 AGGTGAAATTTGATGAGTATGAAGG 57.364 36.000 0.00 0.00 0.00 3.46
3300 3749 7.232330 TGAGTATGAAGGTCCTGATTCTGATAG 59.768 40.741 0.00 0.00 0.00 2.08
3305 3754 6.268617 TGAAGGTCCTGATTCTGATAGTATGG 59.731 42.308 0.00 0.00 0.00 2.74
3310 3766 7.179338 GGTCCTGATTCTGATAGTATGGTATGT 59.821 40.741 0.00 0.00 0.00 2.29
3355 3813 6.421485 AGGATATGAACAGCATTCTGAAACT 58.579 36.000 0.00 0.00 42.95 2.66
3358 3816 2.807967 TGAACAGCATTCTGAAACTCGG 59.192 45.455 0.00 0.00 42.95 4.63
3374 3832 4.028852 ACTCGGTTTCTGAAAGTTTTGC 57.971 40.909 2.48 0.00 33.76 3.68
3392 3850 1.959226 CGTAGGCTGCAAACGTGGT 60.959 57.895 15.20 0.00 32.16 4.16
3400 3858 2.686816 GCAAACGTGGTCGATGGGG 61.687 63.158 0.00 0.00 40.62 4.96
3401 3859 1.302192 CAAACGTGGTCGATGGGGT 60.302 57.895 0.00 0.00 40.62 4.95
3409 3867 0.600255 GGTCGATGGGGTATTGCTCG 60.600 60.000 0.00 0.00 0.00 5.03
3423 3881 1.811266 GCTCGATTCTGCCGCTGAA 60.811 57.895 14.24 14.24 0.00 3.02
3436 3894 3.058293 TGCCGCTGAAAAATCAGTTACTG 60.058 43.478 5.94 5.94 39.76 2.74
3438 3896 3.492313 CGCTGAAAAATCAGTTACTGCC 58.508 45.455 7.61 0.00 39.76 4.85
3457 3935 0.182061 CATGGGTACAGCAGCTGGAT 59.818 55.000 26.38 9.06 35.51 3.41
3467 3945 2.034878 AGCAGCTGGATGAGTATCGAA 58.965 47.619 17.12 0.00 38.61 3.71
3515 3993 4.692228 TGGGATTCTTTTGCACTTTTGTC 58.308 39.130 0.00 0.00 0.00 3.18
3522 4000 5.964758 TCTTTTGCACTTTTGTCACTTCAT 58.035 33.333 0.00 0.00 0.00 2.57
3545 4023 9.076781 TCATCTGTCAATTTTCTTATGACCAAA 57.923 29.630 3.01 0.00 42.12 3.28
3565 4043 1.131638 GACTGGATGGGCTGTGGATA 58.868 55.000 0.00 0.00 0.00 2.59
3590 4068 0.807496 GTTCTTGTGCAGGCATCTCC 59.193 55.000 0.00 0.00 0.00 3.71
3594 4072 0.328926 TTGTGCAGGCATCTCCATCA 59.671 50.000 0.00 0.00 37.29 3.07
3677 4155 1.765314 CTAGGCCATGCTACTTGTCCT 59.235 52.381 5.01 0.00 0.00 3.85
3685 4163 3.111853 TGCTACTTGTCCTTCTGTGTG 57.888 47.619 0.00 0.00 0.00 3.82
3721 4208 0.613777 GGACGGGACTGGTCAGATTT 59.386 55.000 4.84 0.00 36.12 2.17
3723 4210 2.347731 GACGGGACTGGTCAGATTTTC 58.652 52.381 4.84 0.00 34.56 2.29
3724 4211 1.003233 ACGGGACTGGTCAGATTTTCC 59.997 52.381 4.84 1.32 0.00 3.13
3728 4215 2.305927 GGACTGGTCAGATTTTCCTCCA 59.694 50.000 4.84 0.00 0.00 3.86
3730 4217 4.164221 GGACTGGTCAGATTTTCCTCCATA 59.836 45.833 4.84 0.00 0.00 2.74
3733 4220 7.420214 GGACTGGTCAGATTTTCCTCCATATAA 60.420 40.741 4.84 0.00 0.00 0.98
3734 4221 7.512992 ACTGGTCAGATTTTCCTCCATATAAG 58.487 38.462 4.84 0.00 0.00 1.73
3735 4222 7.127955 ACTGGTCAGATTTTCCTCCATATAAGT 59.872 37.037 4.84 0.00 0.00 2.24
3737 4224 8.998814 TGGTCAGATTTTCCTCCATATAAGTTA 58.001 33.333 0.00 0.00 0.00 2.24
3741 4228 9.495572 CAGATTTTCCTCCATATAAGTTAGACC 57.504 37.037 0.00 0.00 0.00 3.85
3743 4230 9.274206 GATTTTCCTCCATATAAGTTAGACCAC 57.726 37.037 0.00 0.00 0.00 4.16
3744 4231 7.989947 TTTCCTCCATATAAGTTAGACCACT 57.010 36.000 0.00 0.00 0.00 4.00
3746 4233 6.679542 TCCTCCATATAAGTTAGACCACTGA 58.320 40.000 0.00 0.00 0.00 3.41
3805 4293 2.414058 TGCGGCTGTGTAAATTTGTG 57.586 45.000 0.00 0.00 0.00 3.33
3807 4295 1.601663 GCGGCTGTGTAAATTTGTGCA 60.602 47.619 0.00 0.00 0.00 4.57
3808 4296 2.318578 CGGCTGTGTAAATTTGTGCAG 58.681 47.619 0.00 7.08 0.00 4.41
3811 4299 3.308530 GCTGTGTAAATTTGTGCAGGTC 58.691 45.455 0.00 0.00 0.00 3.85
3812 4300 3.554524 CTGTGTAAATTTGTGCAGGTCG 58.445 45.455 0.00 0.00 0.00 4.79
3818 4306 1.317613 ATTTGTGCAGGTCGCTTTCA 58.682 45.000 0.00 0.00 43.06 2.69
3821 4309 1.317613 TGTGCAGGTCGCTTTCATTT 58.682 45.000 0.00 0.00 43.06 2.32
3853 4344 2.351418 GCACACAAATGCATACTCGCTA 59.649 45.455 0.00 0.00 45.39 4.26
3859 4350 7.321984 CACACAAATGCATACTCGCTATAATTG 59.678 37.037 0.00 0.00 0.00 2.32
3865 4356 4.820897 CATACTCGCTATAATTGCCAGGA 58.179 43.478 0.00 0.00 0.00 3.86
3869 4360 4.040952 ACTCGCTATAATTGCCAGGAAGAT 59.959 41.667 0.00 0.00 0.00 2.40
3877 4368 4.792513 ATTGCCAGGAAGATCTGAGATT 57.207 40.909 0.00 0.00 36.93 2.40
3878 4369 4.581309 TTGCCAGGAAGATCTGAGATTT 57.419 40.909 0.00 0.00 36.93 2.17
3879 4370 3.882444 TGCCAGGAAGATCTGAGATTTG 58.118 45.455 0.00 0.00 36.93 2.32
3882 4373 3.117963 CCAGGAAGATCTGAGATTTGGCT 60.118 47.826 0.00 0.00 36.93 4.75
3883 4374 3.878103 CAGGAAGATCTGAGATTTGGCTG 59.122 47.826 0.00 0.00 36.93 4.85
3898 4389 0.681733 GGCTGACTGGTGAGAACTGA 59.318 55.000 0.00 0.00 0.00 3.41
3906 4397 7.497249 GCTGACTGGTGAGAACTGAAATTATAT 59.503 37.037 0.00 0.00 0.00 0.86
3939 4430 2.254546 TCGGTTGCAAGTCATTGTCT 57.745 45.000 0.00 0.00 38.76 3.41
3950 4441 5.446473 GCAAGTCATTGTCTACGGATTCTTG 60.446 44.000 0.00 0.00 38.76 3.02
3965 4457 5.233902 CGGATTCTTGAGATAAGAGCTGTTG 59.766 44.000 6.33 0.00 0.00 3.33
3986 4489 7.573710 TGTTGGATATCAGTATGCTTTTACCT 58.426 34.615 4.83 0.00 34.76 3.08
3993 4496 6.466885 TCAGTATGCTTTTACCTAGAGACC 57.533 41.667 0.00 0.00 34.76 3.85
3998 4501 5.562298 TGCTTTTACCTAGAGACCTTTGT 57.438 39.130 0.00 0.00 0.00 2.83
4031 4535 9.031537 TGACAATAGGTAGATAGTTTTGTCTCA 57.968 33.333 12.43 0.00 41.09 3.27
4033 4537 8.812972 ACAATAGGTAGATAGTTTTGTCTCACA 58.187 33.333 0.00 0.00 0.00 3.58
4056 4560 2.126346 GTTGTGCTCGCCCATTGC 60.126 61.111 0.00 0.00 0.00 3.56
4057 4561 3.372730 TTGTGCTCGCCCATTGCC 61.373 61.111 0.00 0.00 36.24 4.52
4087 4591 9.717942 CCACCATTTCTGTTTGGATTAAATTAA 57.282 29.630 0.00 0.00 36.79 1.40
4089 4593 9.418045 ACCATTTCTGTTTGGATTAAATTAACG 57.582 29.630 0.00 0.00 36.79 3.18
4090 4594 9.418045 CCATTTCTGTTTGGATTAAATTAACGT 57.582 29.630 0.00 0.00 34.81 3.99
4096 4600 9.698617 CTGTTTGGATTAAATTAACGTAGTAGC 57.301 33.333 0.00 0.00 45.00 3.58
4097 4601 9.217278 TGTTTGGATTAAATTAACGTAGTAGCA 57.783 29.630 0.00 0.00 45.00 3.49
4098 4602 9.481800 GTTTGGATTAAATTAACGTAGTAGCAC 57.518 33.333 0.00 0.00 45.00 4.40
4099 4603 8.774890 TTGGATTAAATTAACGTAGTAGCACA 57.225 30.769 0.00 0.00 45.00 4.57
4100 4604 8.415192 TGGATTAAATTAACGTAGTAGCACAG 57.585 34.615 0.00 0.00 45.00 3.66
4101 4605 7.010738 TGGATTAAATTAACGTAGTAGCACAGC 59.989 37.037 0.00 0.00 45.00 4.40
4103 4607 7.837202 TTAAATTAACGTAGTAGCACAGCAT 57.163 32.000 0.00 0.00 45.00 3.79
4104 4608 5.968387 AATTAACGTAGTAGCACAGCATC 57.032 39.130 0.00 0.00 45.00 3.91
4129 4633 8.341903 TCCGTATATGCAACTTTTTGTGATATG 58.658 33.333 0.00 0.00 34.90 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 7.983484 GCCATGATTTCAAACCAGAAGATAAAT 59.017 33.333 0.00 0.00 0.00 1.40
15 16 6.189859 AGCCATGATTTCAAACCAGAAGATA 58.810 36.000 0.00 0.00 0.00 1.98
21 22 7.944061 TGAATATAGCCATGATTTCAAACCAG 58.056 34.615 0.00 0.00 0.00 4.00
49 50 7.392766 TGGGATACACAATCTATTTCTCCAT 57.607 36.000 0.00 0.00 34.75 3.41
89 90 2.783135 ACAGTGCAATCCTCGACATTT 58.217 42.857 0.00 0.00 0.00 2.32
95 96 3.499918 AGAGAAAAACAGTGCAATCCTCG 59.500 43.478 0.00 0.00 0.00 4.63
98 99 5.812127 ACAAAAGAGAAAAACAGTGCAATCC 59.188 36.000 0.00 0.00 0.00 3.01
177 183 9.624373 AAATCATATCTTATCTGCATATGGTCC 57.376 33.333 4.56 0.00 33.15 4.46
230 236 8.765219 GCGTTATGACAAGATTTATGTCTATGT 58.235 33.333 8.01 0.00 45.81 2.29
231 237 8.764287 TGCGTTATGACAAGATTTATGTCTATG 58.236 33.333 8.01 1.73 45.81 2.23
274 280 2.884012 TGCTCCATTGTGACGTCATTTT 59.116 40.909 23.12 6.39 0.00 1.82
285 291 2.154462 CTCTTTTCCGTGCTCCATTGT 58.846 47.619 0.00 0.00 0.00 2.71
293 299 1.082104 CAACGCCTCTTTTCCGTGC 60.082 57.895 0.00 0.00 35.13 5.34
297 303 1.821216 TCATCCAACGCCTCTTTTCC 58.179 50.000 0.00 0.00 0.00 3.13
358 401 0.802494 CGATGGCTAAACGCAACCTT 59.198 50.000 0.00 0.00 41.67 3.50
365 408 2.199236 GGTCTAACCGATGGCTAAACG 58.801 52.381 0.00 0.00 0.00 3.60
410 453 3.822594 TCATCGGGAACAAATTTGACG 57.177 42.857 24.64 19.87 0.00 4.35
639 847 0.477597 ACCACTCCCCTCCATCCAAA 60.478 55.000 0.00 0.00 0.00 3.28
640 848 1.163309 ACCACTCCCCTCCATCCAA 59.837 57.895 0.00 0.00 0.00 3.53
642 850 1.616628 ACACCACTCCCCTCCATCC 60.617 63.158 0.00 0.00 0.00 3.51
670 882 4.052229 CCGAACTCGACGCACCCT 62.052 66.667 0.00 0.00 43.02 4.34
674 886 3.263503 CTCACCCGAACTCGACGCA 62.264 63.158 0.00 0.00 43.02 5.24
675 887 2.504244 CTCACCCGAACTCGACGC 60.504 66.667 0.00 0.00 43.02 5.19
677 889 1.507174 CTCCTCACCCGAACTCGAC 59.493 63.158 0.00 0.00 43.02 4.20
678 890 1.677966 CCTCCTCACCCGAACTCGA 60.678 63.158 0.00 0.00 43.02 4.04
726 938 0.107643 TGCCTCCGACACAATCACAA 59.892 50.000 0.00 0.00 0.00 3.33
731 943 1.003355 CACCTGCCTCCGACACAAT 60.003 57.895 0.00 0.00 0.00 2.71
733 945 2.523168 TCACCTGCCTCCGACACA 60.523 61.111 0.00 0.00 0.00 3.72
747 959 4.595538 TGACACCACGCCCGTCAC 62.596 66.667 0.00 0.00 34.83 3.67
748 960 3.800685 CTTGACACCACGCCCGTCA 62.801 63.158 0.00 0.00 37.87 4.35
749 961 3.041940 CTTGACACCACGCCCGTC 61.042 66.667 0.00 0.00 0.00 4.79
751 963 4.988598 AGCTTGACACCACGCCCG 62.989 66.667 0.00 0.00 38.20 6.13
752 964 3.050275 GAGCTTGACACCACGCCC 61.050 66.667 0.00 0.00 38.20 6.13
753 965 2.280797 TGAGCTTGACACCACGCC 60.281 61.111 0.00 0.00 38.20 5.68
754 966 1.287730 CTCTGAGCTTGACACCACGC 61.288 60.000 0.00 0.00 37.77 5.34
755 967 0.315251 TCTCTGAGCTTGACACCACG 59.685 55.000 0.00 0.00 0.00 4.94
756 968 2.289320 ACATCTCTGAGCTTGACACCAC 60.289 50.000 12.47 0.00 0.00 4.16
757 969 1.973515 ACATCTCTGAGCTTGACACCA 59.026 47.619 12.47 0.00 0.00 4.17
779 991 9.846248 GACATAACAAAACTGAAAAGATAGCAT 57.154 29.630 0.00 0.00 0.00 3.79
798 1010 4.479619 AGTCACGTAAAGACCGACATAAC 58.520 43.478 1.21 0.00 36.68 1.89
800 1012 4.022935 ACAAGTCACGTAAAGACCGACATA 60.023 41.667 1.21 0.00 36.68 2.29
806 1018 6.256321 TCAAAAGTACAAGTCACGTAAAGACC 59.744 38.462 0.00 0.00 36.68 3.85
912 1124 8.766476 AGATTAAGGATCGGATCATATCAACAT 58.234 33.333 18.99 0.00 39.85 2.71
920 1132 5.013547 ACGAGAGATTAAGGATCGGATCAT 58.986 41.667 18.99 9.88 39.85 2.45
925 1137 2.623889 ACCACGAGAGATTAAGGATCGG 59.376 50.000 0.00 0.00 39.85 4.18
926 1138 3.566322 AGACCACGAGAGATTAAGGATCG 59.434 47.826 0.00 0.00 39.85 3.69
1186 1417 2.371510 GGGATTGGAGGAGAATCTGAGG 59.628 54.545 0.00 0.00 33.73 3.86
1187 1418 2.371510 GGGGATTGGAGGAGAATCTGAG 59.628 54.545 0.00 0.00 33.73 3.35
1188 1419 2.021639 AGGGGATTGGAGGAGAATCTGA 60.022 50.000 0.00 0.00 33.73 3.27
1189 1420 2.371510 GAGGGGATTGGAGGAGAATCTG 59.628 54.545 0.00 0.00 33.73 2.90
1208 1439 2.284699 AACCGACTGGGAGGGGAG 60.285 66.667 0.00 0.00 40.75 4.30
1228 1459 2.597903 GGGGAGCCAGATCAACCC 59.402 66.667 0.00 0.00 39.79 4.11
1279 1510 3.124921 CCAGGCGCCGTAAACAGG 61.125 66.667 23.20 11.54 0.00 4.00
1618 2024 4.326504 AATGCTACTAATGGCAATTGGC 57.673 40.909 24.20 24.20 46.47 4.52
1655 2061 3.703556 TCTTAGCTCCCATCAGAACTCTG 59.296 47.826 0.00 0.00 45.08 3.35
1659 2065 5.679601 AGATTTCTTAGCTCCCATCAGAAC 58.320 41.667 0.00 0.00 0.00 3.01
1660 2066 5.965033 AGATTTCTTAGCTCCCATCAGAA 57.035 39.130 0.00 0.00 0.00 3.02
1661 2067 5.965033 AAGATTTCTTAGCTCCCATCAGA 57.035 39.130 0.00 0.00 33.79 3.27
1796 2204 5.806502 TGTTCTGCATTTGTGACAAAAAGAG 59.193 36.000 15.31 10.35 0.00 2.85
1797 2205 5.718146 TGTTCTGCATTTGTGACAAAAAGA 58.282 33.333 15.31 14.42 0.00 2.52
1798 2206 6.406093 TTGTTCTGCATTTGTGACAAAAAG 57.594 33.333 15.31 12.49 0.00 2.27
1830 2238 8.404107 TCAATAAAATTTCCTTTCCTCGACTT 57.596 30.769 0.00 0.00 0.00 3.01
1899 2307 5.064325 GGCTAAAATAACCTCTGTAACACCG 59.936 44.000 0.00 0.00 0.00 4.94
1902 2310 7.398829 TGATGGCTAAAATAACCTCTGTAACA 58.601 34.615 0.00 0.00 0.00 2.41
1950 2358 6.835914 AGAACAGCAAAGACAAATTATCTCG 58.164 36.000 0.00 0.00 0.00 4.04
2009 2422 7.119846 ACCTGAAATAGATAAAGCACAACAGTC 59.880 37.037 0.00 0.00 0.00 3.51
2150 2563 0.531532 GCTCACCAGATCCATCCACG 60.532 60.000 0.00 0.00 0.00 4.94
2165 2578 0.756294 TGAGGACAAAGAACGGCTCA 59.244 50.000 0.00 0.00 0.00 4.26
2171 2584 4.576463 ACATCACTGTTGAGGACAAAGAAC 59.424 41.667 0.00 0.00 36.99 3.01
2301 2714 8.829612 CAGCATACATACATGAGTTGATTACAA 58.170 33.333 0.00 0.00 0.00 2.41
2306 2719 6.704937 CAGTCAGCATACATACATGAGTTGAT 59.295 38.462 0.00 0.00 0.00 2.57
2307 2720 6.044682 CAGTCAGCATACATACATGAGTTGA 58.955 40.000 0.00 0.00 0.00 3.18
2308 2721 5.277202 GCAGTCAGCATACATACATGAGTTG 60.277 44.000 0.00 0.00 44.79 3.16
2323 2739 6.643884 ACCTATATTTAAGGGGCAGTCAGCA 61.644 44.000 0.00 0.00 40.45 4.41
2369 2785 2.708861 TGTGTCCTCCATAACCACAACT 59.291 45.455 0.00 0.00 33.44 3.16
2453 2869 6.373216 CAGACGGATTTAACAGGTAAATTCCA 59.627 38.462 4.88 0.00 41.56 3.53
2531 2947 1.012086 TCTGATCAGCAGCAATTCGC 58.988 50.000 18.36 0.00 44.52 4.70
2540 2956 1.202348 GCGTAGAGCTTCTGATCAGCA 60.202 52.381 18.36 6.34 44.04 4.41
2576 2992 3.134442 GCTGGCCAATATCCATCCAAAAA 59.866 43.478 7.01 0.00 32.37 1.94
2612 3028 3.887621 AGATAAAGACGCAAGCCAGTA 57.112 42.857 0.00 0.00 45.62 2.74
2682 3098 1.084018 ACCAGGACATTCCCCACAAT 58.916 50.000 0.00 0.00 37.19 2.71
2687 3103 1.678970 GTGCACCAGGACATTCCCC 60.679 63.158 5.22 0.00 37.19 4.81
2750 3166 1.224069 CGCATCCAGGTCCAATAGCG 61.224 60.000 0.00 0.00 37.91 4.26
2906 3322 4.346418 ACATGTACATCTTCTCCCAGGATC 59.654 45.833 5.07 0.00 0.00 3.36
2921 3337 2.751259 GACCTCGTCACCTACATGTACA 59.249 50.000 0.08 0.00 32.09 2.90
2975 3391 3.773667 TCAGGATGCTTGACTTGATCTCT 59.226 43.478 0.00 0.00 34.76 3.10
3033 3449 4.219033 CACAACATCGTTCCTAAAAGCAC 58.781 43.478 0.00 0.00 0.00 4.40
3056 3472 5.220228 GCTGTTTACAGTATGCACTAGAACG 60.220 44.000 11.23 0.00 45.45 3.95
3100 3525 7.933577 ACATTCTCATCAGTTTAACAAGTCTCA 59.066 33.333 0.00 0.00 0.00 3.27
3200 3625 7.148239 CGGAGAAAATAAAGTAAACAGGCTGAT 60.148 37.037 23.66 6.45 0.00 2.90
3237 3680 9.657419 CCTTCAAAGGCATTGTTCTTATTTATT 57.343 29.630 2.06 0.00 39.76 1.40
3268 3711 6.566079 TCAGGACCTTCATACTCATCAAAT 57.434 37.500 0.00 0.00 0.00 2.32
3273 3722 5.901853 TCAGAATCAGGACCTTCATACTCAT 59.098 40.000 0.00 0.00 0.00 2.90
3285 3734 8.031864 CACATACCATACTATCAGAATCAGGAC 58.968 40.741 0.00 0.00 0.00 3.85
3300 3749 5.122396 GCAAGGCTAATAGCACATACCATAC 59.878 44.000 14.76 0.00 44.75 2.39
3305 3754 3.058639 GCTGCAAGGCTAATAGCACATAC 60.059 47.826 14.76 0.03 44.75 2.39
3310 3766 2.127271 TTGCTGCAAGGCTAATAGCA 57.873 45.000 11.69 13.36 44.75 3.49
3316 3772 2.220653 ATCCTTTTGCTGCAAGGCTA 57.779 45.000 15.39 3.83 40.77 3.93
3355 3813 2.420722 ACGCAAAACTTTCAGAAACCGA 59.579 40.909 0.00 0.00 0.00 4.69
3358 3816 3.729217 GCCTACGCAAAACTTTCAGAAAC 59.271 43.478 0.00 0.00 34.03 2.78
3374 3832 1.897398 GACCACGTTTGCAGCCTACG 61.897 60.000 13.19 13.19 40.85 3.51
3392 3850 1.338107 ATCGAGCAATACCCCATCGA 58.662 50.000 0.00 0.00 45.34 3.59
3400 3858 0.233332 GCGGCAGAATCGAGCAATAC 59.767 55.000 0.00 0.00 0.00 1.89
3401 3859 0.104855 AGCGGCAGAATCGAGCAATA 59.895 50.000 1.45 0.00 0.00 1.90
3409 3867 3.119708 ACTGATTTTTCAGCGGCAGAATC 60.120 43.478 8.68 4.70 41.19 2.52
3423 3881 3.778265 ACCCATGGCAGTAACTGATTTT 58.222 40.909 6.09 0.00 32.44 1.82
3436 3894 2.117156 CAGCTGCTGTACCCATGGC 61.117 63.158 21.21 0.00 0.00 4.40
3438 3896 0.182061 ATCCAGCTGCTGTACCCATG 59.818 55.000 26.41 10.71 0.00 3.66
3457 3935 3.119602 AGCAAACTAGCGTTCGATACTCA 60.120 43.478 0.00 0.00 40.15 3.41
3467 3945 1.276421 ACAGGATGAGCAAACTAGCGT 59.724 47.619 0.00 0.00 39.69 5.07
3515 3993 9.552114 GTCATAAGAAAATTGACAGATGAAGTG 57.448 33.333 0.00 0.00 39.59 3.16
3522 4000 8.567948 GTCTTTGGTCATAAGAAAATTGACAGA 58.432 33.333 4.85 0.00 41.17 3.41
3545 4023 0.622738 ATCCACAGCCCATCCAGTCT 60.623 55.000 0.00 0.00 0.00 3.24
3565 4043 0.593128 GCCTGCACAAGAACATTCGT 59.407 50.000 0.00 0.00 0.00 3.85
3590 4068 4.164822 AGCCACTTCGATTTGTTTGATG 57.835 40.909 0.00 0.00 0.00 3.07
3594 4072 5.767816 AAGTAAGCCACTTCGATTTGTTT 57.232 34.783 0.00 0.00 44.48 2.83
3633 4111 5.112686 AGCGGTTTACATCTTCTCATCTTC 58.887 41.667 0.00 0.00 0.00 2.87
3677 4155 2.936919 ATCACAAGAGGCACACAGAA 57.063 45.000 0.00 0.00 0.00 3.02
3685 4163 2.079925 GTCCACAGAATCACAAGAGGC 58.920 52.381 0.00 0.00 0.00 4.70
3721 4208 7.130099 TCAGTGGTCTAACTTATATGGAGGAA 58.870 38.462 0.00 0.00 0.00 3.36
3723 4210 6.778069 TCTCAGTGGTCTAACTTATATGGAGG 59.222 42.308 0.00 0.00 0.00 4.30
3724 4211 7.825331 TCTCAGTGGTCTAACTTATATGGAG 57.175 40.000 0.00 0.00 0.00 3.86
3728 4215 7.624077 ACCCTTTCTCAGTGGTCTAACTTATAT 59.376 37.037 0.00 0.00 0.00 0.86
3730 4217 5.785940 ACCCTTTCTCAGTGGTCTAACTTAT 59.214 40.000 0.00 0.00 0.00 1.73
3733 4220 3.588569 ACCCTTTCTCAGTGGTCTAACT 58.411 45.455 0.00 0.00 0.00 2.24
3734 4221 4.353383 AACCCTTTCTCAGTGGTCTAAC 57.647 45.455 0.00 0.00 0.00 2.34
3735 4222 4.530946 CCTAACCCTTTCTCAGTGGTCTAA 59.469 45.833 0.00 0.00 0.00 2.10
3737 4224 2.907042 CCTAACCCTTTCTCAGTGGTCT 59.093 50.000 0.00 0.00 0.00 3.85
3739 4226 1.351350 GCCTAACCCTTTCTCAGTGGT 59.649 52.381 0.00 0.00 0.00 4.16
3740 4227 1.630878 AGCCTAACCCTTTCTCAGTGG 59.369 52.381 0.00 0.00 0.00 4.00
3741 4228 3.077359 CAAGCCTAACCCTTTCTCAGTG 58.923 50.000 0.00 0.00 0.00 3.66
3743 4230 2.716217 CCAAGCCTAACCCTTTCTCAG 58.284 52.381 0.00 0.00 0.00 3.35
3744 4231 1.271926 GCCAAGCCTAACCCTTTCTCA 60.272 52.381 0.00 0.00 0.00 3.27
3746 4233 0.039764 GGCCAAGCCTAACCCTTTCT 59.960 55.000 0.00 0.00 46.69 2.52
3773 4261 2.548057 ACAGCCGCATTCCATATTAACG 59.452 45.455 0.00 0.00 0.00 3.18
3776 4264 3.207265 ACACAGCCGCATTCCATATTA 57.793 42.857 0.00 0.00 0.00 0.98
3780 4268 1.832883 TTTACACAGCCGCATTCCAT 58.167 45.000 0.00 0.00 0.00 3.41
3832 4320 1.131126 AGCGAGTATGCATTTGTGTGC 59.869 47.619 3.54 2.25 45.25 4.57
3833 4321 4.801147 ATAGCGAGTATGCATTTGTGTG 57.199 40.909 3.54 0.00 37.31 3.82
3834 4322 7.355017 CAATTATAGCGAGTATGCATTTGTGT 58.645 34.615 3.54 0.00 37.31 3.72
3835 4323 6.303970 GCAATTATAGCGAGTATGCATTTGTG 59.696 38.462 3.54 0.00 37.31 3.33
3841 4329 3.996363 CTGGCAATTATAGCGAGTATGCA 59.004 43.478 0.00 0.00 37.31 3.96
3842 4330 3.372206 CCTGGCAATTATAGCGAGTATGC 59.628 47.826 0.00 0.00 36.27 3.14
3843 4331 4.820897 TCCTGGCAATTATAGCGAGTATG 58.179 43.478 0.00 0.00 36.27 2.39
3844 4332 5.246203 TCTTCCTGGCAATTATAGCGAGTAT 59.754 40.000 0.00 0.00 36.27 2.12
3845 4333 4.587262 TCTTCCTGGCAATTATAGCGAGTA 59.413 41.667 0.00 0.00 36.27 2.59
3847 4335 3.995199 TCTTCCTGGCAATTATAGCGAG 58.005 45.455 0.00 0.00 37.54 5.03
3848 4336 4.284490 AGATCTTCCTGGCAATTATAGCGA 59.716 41.667 0.00 0.00 0.00 4.93
3853 4344 5.901413 TCTCAGATCTTCCTGGCAATTAT 57.099 39.130 0.00 0.00 34.99 1.28
3859 4350 3.212685 CCAAATCTCAGATCTTCCTGGC 58.787 50.000 0.00 0.00 34.99 4.85
3865 4356 4.515361 CAGTCAGCCAAATCTCAGATCTT 58.485 43.478 0.00 0.00 0.00 2.40
3869 4360 1.980765 ACCAGTCAGCCAAATCTCAGA 59.019 47.619 0.00 0.00 0.00 3.27
3877 4368 1.131638 AGTTCTCACCAGTCAGCCAA 58.868 50.000 0.00 0.00 0.00 4.52
3878 4369 0.394192 CAGTTCTCACCAGTCAGCCA 59.606 55.000 0.00 0.00 0.00 4.75
3879 4370 0.681733 TCAGTTCTCACCAGTCAGCC 59.318 55.000 0.00 0.00 0.00 4.85
3882 4373 8.539544 TGATATAATTTCAGTTCTCACCAGTCA 58.460 33.333 0.00 0.00 0.00 3.41
3883 4374 8.821894 GTGATATAATTTCAGTTCTCACCAGTC 58.178 37.037 0.00 0.00 0.00 3.51
3898 4389 9.449719 ACCGAAACTCTGAAAGTGATATAATTT 57.550 29.630 0.00 0.00 38.58 1.82
3906 4397 2.612212 GCAACCGAAACTCTGAAAGTGA 59.388 45.455 0.00 0.00 38.58 3.41
3914 4405 2.325583 TGACTTGCAACCGAAACTCT 57.674 45.000 0.00 0.00 0.00 3.24
3922 4413 2.159627 CCGTAGACAATGACTTGCAACC 59.840 50.000 0.00 0.00 35.69 3.77
3939 4430 5.594725 ACAGCTCTTATCTCAAGAATCCGTA 59.405 40.000 0.00 0.00 0.00 4.02
3950 4441 6.991938 ACTGATATCCAACAGCTCTTATCTC 58.008 40.000 0.00 0.00 37.61 2.75
3965 4457 9.026121 TCTCTAGGTAAAAGCATACTGATATCC 57.974 37.037 0.00 0.00 0.00 2.59
3986 4489 4.530553 TGTCAGGCATTACAAAGGTCTCTA 59.469 41.667 0.00 0.00 0.00 2.43
3993 4496 7.047891 TCTACCTATTGTCAGGCATTACAAAG 58.952 38.462 1.85 2.33 38.95 2.77
3998 4501 8.492415 AACTATCTACCTATTGTCAGGCATTA 57.508 34.615 0.00 0.00 39.53 1.90
4033 4537 2.325082 GGGCGAGCACAACGATTGT 61.325 57.895 0.00 0.00 46.75 2.71
4048 4552 4.086547 GGTGGCTTGGCAATGGGC 62.087 66.667 0.00 2.91 43.74 5.36
4049 4553 1.555477 AATGGTGGCTTGGCAATGGG 61.555 55.000 0.00 0.00 0.00 4.00
4056 4560 2.548493 CCAAACAGAAATGGTGGCTTGG 60.548 50.000 0.00 0.00 31.84 3.61
4057 4561 2.364970 TCCAAACAGAAATGGTGGCTTG 59.635 45.455 0.00 0.00 37.94 4.01
4087 4591 0.100682 CGGATGCTGTGCTACTACGT 59.899 55.000 0.00 0.00 0.00 3.57
4088 4592 0.100682 ACGGATGCTGTGCTACTACG 59.899 55.000 0.00 0.00 0.00 3.51
4089 4593 3.644884 ATACGGATGCTGTGCTACTAC 57.355 47.619 0.00 0.00 0.00 2.73
4090 4594 5.310720 CATATACGGATGCTGTGCTACTA 57.689 43.478 0.00 0.00 0.00 1.82
4091 4595 4.179926 CATATACGGATGCTGTGCTACT 57.820 45.455 0.00 0.00 0.00 2.57
4101 4605 6.550843 TCACAAAAAGTTGCATATACGGATG 58.449 36.000 0.00 0.00 38.39 3.51
4103 4607 6.751514 ATCACAAAAAGTTGCATATACGGA 57.248 33.333 0.00 0.00 38.39 4.69
4104 4608 7.591057 CCATATCACAAAAAGTTGCATATACGG 59.409 37.037 0.00 0.00 38.39 4.02
4122 4626 0.384309 TCGACGCTGGACCATATCAC 59.616 55.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.