Multiple sequence alignment - TraesCS3D01G356500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G356500 chr3D 100.000 6300 0 0 1 6300 468949458 468955757 0.000000e+00 11635.0
1 TraesCS3D01G356500 chr3D 95.442 746 22 4 5567 6300 334133 334878 0.000000e+00 1179.0
2 TraesCS3D01G356500 chr3D 89.879 247 21 2 1034 1280 456019207 456018965 1.320000e-81 315.0
3 TraesCS3D01G356500 chr3D 98.387 62 1 0 3 64 468966320 468966381 6.680000e-20 110.0
4 TraesCS3D01G356500 chr3D 95.238 63 3 0 1 63 532808836 532808898 4.020000e-17 100.0
5 TraesCS3D01G356500 chr3D 93.846 65 3 1 1 65 507634155 507634218 5.200000e-16 97.1
6 TraesCS3D01G356500 chr3D 90.476 63 5 1 3 64 37487231 37487293 1.460000e-11 82.4
7 TraesCS3D01G356500 chr3A 92.031 4593 236 62 397 4953 611165201 611169699 0.000000e+00 6335.0
8 TraesCS3D01G356500 chr3A 95.144 556 19 6 5012 5566 611169993 611170541 0.000000e+00 870.0
9 TraesCS3D01G356500 chr3A 93.750 64 3 1 1 64 747055349 747055287 1.870000e-15 95.3
10 TraesCS3D01G356500 chr3B 90.685 3328 190 69 383 3670 622759384 622762631 0.000000e+00 4318.0
11 TraesCS3D01G356500 chr3B 90.162 1047 62 14 3736 4766 622762631 622763652 0.000000e+00 1325.0
12 TraesCS3D01G356500 chr3B 93.486 568 21 8 5002 5564 622764266 622764822 0.000000e+00 830.0
13 TraesCS3D01G356500 chr3B 91.713 181 15 0 4773 4953 622763708 622763888 1.050000e-62 252.0
14 TraesCS3D01G356500 chr3B 85.398 226 26 4 65 288 622757708 622757928 1.770000e-55 228.0
15 TraesCS3D01G356500 chr7D 96.649 746 13 4 5567 6300 531067727 531066982 0.000000e+00 1229.0
16 TraesCS3D01G356500 chr7D 95.861 749 16 6 5567 6300 586698690 586697942 0.000000e+00 1197.0
17 TraesCS3D01G356500 chr2D 96.529 749 11 4 5567 6300 130079133 130078385 0.000000e+00 1225.0
18 TraesCS3D01G356500 chr2D 95.845 746 18 4 5567 6300 617340745 617341489 0.000000e+00 1194.0
19 TraesCS3D01G356500 chr2D 95.312 64 3 0 1 64 628171234 628171297 1.120000e-17 102.0
20 TraesCS3D01G356500 chr4D 95.850 747 17 6 5567 6300 491381490 491382235 0.000000e+00 1195.0
21 TraesCS3D01G356500 chr4D 95.312 64 3 0 1 64 389492616 389492679 1.120000e-17 102.0
22 TraesCS3D01G356500 chr5D 95.705 745 21 3 5567 6300 555413536 555414280 0.000000e+00 1188.0
23 TraesCS3D01G356500 chr5D 95.448 747 20 6 5567 6300 552029045 552028300 0.000000e+00 1179.0
24 TraesCS3D01G356500 chr5D 98.413 63 1 0 3 65 322189672 322189734 1.860000e-20 111.0
25 TraesCS3D01G356500 chr5D 87.500 64 8 0 5 68 513532856 513532919 2.440000e-09 75.0
26 TraesCS3D01G356500 chr1D 95.168 745 25 3 5567 6300 316243968 316243224 0.000000e+00 1166.0
27 TraesCS3D01G356500 chr1D 98.387 62 1 0 3 64 463531240 463531179 6.680000e-20 110.0
28 TraesCS3D01G356500 chr1D 95.082 61 3 0 3 63 421510 421450 5.200000e-16 97.1
29 TraesCS3D01G356500 chr1D 88.462 52 4 2 14 64 454898077 454898127 1.900000e-05 62.1
30 TraesCS3D01G356500 chr2B 95.312 64 2 1 3 66 73994907 73994969 4.020000e-17 100.0
31 TraesCS3D01G356500 chr7A 93.750 64 3 1 1 64 711170892 711170954 1.870000e-15 95.3
32 TraesCS3D01G356500 chr1A 90.476 63 5 1 3 64 425678865 425678927 1.460000e-11 82.4
33 TraesCS3D01G356500 chr5B 97.059 34 1 0 1247 1280 665189453 665189486 2.450000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G356500 chr3D 468949458 468955757 6299 False 11635.0 11635 100.0000 1 6300 1 chr3D.!!$F3 6299
1 TraesCS3D01G356500 chr3D 334133 334878 745 False 1179.0 1179 95.4420 5567 6300 1 chr3D.!!$F1 733
2 TraesCS3D01G356500 chr3A 611165201 611170541 5340 False 3602.5 6335 93.5875 397 5566 2 chr3A.!!$F1 5169
3 TraesCS3D01G356500 chr3B 622757708 622764822 7114 False 1390.6 4318 90.2888 65 5564 5 chr3B.!!$F1 5499
4 TraesCS3D01G356500 chr7D 531066982 531067727 745 True 1229.0 1229 96.6490 5567 6300 1 chr7D.!!$R1 733
5 TraesCS3D01G356500 chr7D 586697942 586698690 748 True 1197.0 1197 95.8610 5567 6300 1 chr7D.!!$R2 733
6 TraesCS3D01G356500 chr2D 130078385 130079133 748 True 1225.0 1225 96.5290 5567 6300 1 chr2D.!!$R1 733
7 TraesCS3D01G356500 chr2D 617340745 617341489 744 False 1194.0 1194 95.8450 5567 6300 1 chr2D.!!$F1 733
8 TraesCS3D01G356500 chr4D 491381490 491382235 745 False 1195.0 1195 95.8500 5567 6300 1 chr4D.!!$F2 733
9 TraesCS3D01G356500 chr5D 555413536 555414280 744 False 1188.0 1188 95.7050 5567 6300 1 chr5D.!!$F3 733
10 TraesCS3D01G356500 chr5D 552028300 552029045 745 True 1179.0 1179 95.4480 5567 6300 1 chr5D.!!$R1 733
11 TraesCS3D01G356500 chr1D 316243224 316243968 744 True 1166.0 1166 95.1680 5567 6300 1 chr1D.!!$R2 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.035056 AATTTCTGGAGACGGCCCTG 60.035 55.0 0.00 0.00 36.33 4.45 F
173 175 0.108804 ACCGCACCGAATGTAGAGTG 60.109 55.0 0.00 0.00 0.00 3.51 F
1772 3183 0.179051 GGAGCAGCAGGATGAAGGAG 60.179 60.0 0.00 0.00 39.69 3.69 F
2641 4069 0.459237 CTAGGACAAGCAGTGGAGCG 60.459 60.0 0.00 0.00 40.15 5.03 F
3348 4776 0.035739 TTTTGCGGGGGACAGTAGAC 59.964 55.0 0.00 0.00 0.00 2.59 F
4933 6433 0.032130 TGTCTTGTGGAGCTCGTCAC 59.968 55.0 14.22 14.22 34.71 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1757 3168 0.530211 CGAGCTCCTTCATCCTGCTG 60.530 60.000 8.47 0.0 33.83 4.41 R
1837 3248 1.138069 GGTCCAACCAACAAAAGGGTG 59.862 52.381 0.00 0.0 43.61 4.61 R
3333 4761 0.252197 AAATGTCTACTGTCCCCCGC 59.748 55.000 0.00 0.0 0.00 6.13 R
3813 5246 0.038166 GGTCAAGCCATCAACTCCCA 59.962 55.000 0.00 0.0 37.17 4.37 R
5230 7155 0.317160 CGTTCAGCAGGTGGTACTCA 59.683 55.000 0.00 0.0 0.00 3.41 R
5888 7831 0.461135 GAAGCAGAGGAGAGCAGAGG 59.539 60.000 0.00 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.875691 AATTAGAGCCCTATTTTGATTTTTGTC 57.124 29.630 0.00 0.00 0.00 3.18
33 34 6.286240 AGAGCCCTATTTTGATTTTTGTCC 57.714 37.500 0.00 0.00 0.00 4.02
34 35 5.187772 AGAGCCCTATTTTGATTTTTGTCCC 59.812 40.000 0.00 0.00 0.00 4.46
35 36 4.081697 AGCCCTATTTTGATTTTTGTCCCG 60.082 41.667 0.00 0.00 0.00 5.14
36 37 4.754322 CCCTATTTTGATTTTTGTCCCGG 58.246 43.478 0.00 0.00 0.00 5.73
37 38 4.382577 CCCTATTTTGATTTTTGTCCCGGG 60.383 45.833 16.85 16.85 0.00 5.73
38 39 2.535012 TTTTGATTTTTGTCCCGGGC 57.465 45.000 18.49 12.24 0.00 6.13
39 40 0.682292 TTTGATTTTTGTCCCGGGCC 59.318 50.000 18.49 4.39 0.00 5.80
40 41 1.188871 TTGATTTTTGTCCCGGGCCC 61.189 55.000 18.49 13.57 0.00 5.80
41 42 2.284331 ATTTTTGTCCCGGGCCCC 60.284 61.111 18.49 6.66 0.00 5.80
42 43 3.916438 ATTTTTGTCCCGGGCCCCC 62.916 63.158 18.49 3.75 0.00 5.40
47 48 4.392166 GTCCCGGGCCCCCAAATT 62.392 66.667 18.49 0.00 35.37 1.82
48 49 3.606242 TCCCGGGCCCCCAAATTT 61.606 61.111 18.49 0.00 35.37 1.82
49 50 3.080765 CCCGGGCCCCCAAATTTC 61.081 66.667 18.66 0.00 35.37 2.17
50 51 2.038813 CCGGGCCCCCAAATTTCT 59.961 61.111 18.66 0.00 35.37 2.52
51 52 2.358372 CCGGGCCCCCAAATTTCTG 61.358 63.158 18.66 0.00 35.37 3.02
52 53 2.358372 CGGGCCCCCAAATTTCTGG 61.358 63.158 18.66 0.00 35.37 3.86
53 54 1.080170 GGGCCCCCAAATTTCTGGA 59.920 57.895 12.23 0.00 38.96 3.86
54 55 0.977627 GGGCCCCCAAATTTCTGGAG 60.978 60.000 12.23 0.00 38.96 3.86
55 56 0.041090 GGCCCCCAAATTTCTGGAGA 59.959 55.000 0.00 0.00 38.96 3.71
56 57 1.186200 GCCCCCAAATTTCTGGAGAC 58.814 55.000 5.07 0.00 38.96 3.36
57 58 1.463674 CCCCCAAATTTCTGGAGACG 58.536 55.000 5.07 0.00 38.96 4.18
58 59 1.463674 CCCCAAATTTCTGGAGACGG 58.536 55.000 5.07 0.00 38.96 4.79
59 60 0.811281 CCCAAATTTCTGGAGACGGC 59.189 55.000 0.00 0.00 38.96 5.68
60 61 0.811281 CCAAATTTCTGGAGACGGCC 59.189 55.000 0.00 0.00 38.96 6.13
61 62 0.811281 CAAATTTCTGGAGACGGCCC 59.189 55.000 0.00 0.00 36.33 5.80
62 63 0.698818 AAATTTCTGGAGACGGCCCT 59.301 50.000 0.00 0.00 36.33 5.19
63 64 0.035056 AATTTCTGGAGACGGCCCTG 60.035 55.000 0.00 0.00 36.33 4.45
64 65 1.915078 ATTTCTGGAGACGGCCCTGG 61.915 60.000 0.00 0.00 36.33 4.45
65 66 3.846405 TTCTGGAGACGGCCCTGGT 62.846 63.158 0.00 0.00 36.33 4.00
66 67 2.363795 CTGGAGACGGCCCTGGTA 60.364 66.667 0.00 0.00 0.00 3.25
67 68 2.363795 TGGAGACGGCCCTGGTAG 60.364 66.667 0.00 0.00 0.00 3.18
68 69 3.851128 GGAGACGGCCCTGGTAGC 61.851 72.222 0.00 0.00 0.00 3.58
69 70 3.075005 GAGACGGCCCTGGTAGCA 61.075 66.667 0.00 0.00 0.00 3.49
70 71 3.077556 AGACGGCCCTGGTAGCAG 61.078 66.667 15.13 15.13 0.00 4.24
71 72 4.840005 GACGGCCCTGGTAGCAGC 62.840 72.222 16.62 7.01 0.00 5.25
82 83 1.376037 GTAGCAGCACCACCTCACC 60.376 63.158 0.00 0.00 0.00 4.02
89 90 4.250305 ACCACCTCACCGCCACAC 62.250 66.667 0.00 0.00 0.00 3.82
118 119 2.358737 CCCGTGCTTCCACCACTC 60.359 66.667 0.00 0.00 38.79 3.51
119 120 2.425592 CCGTGCTTCCACCACTCA 59.574 61.111 0.00 0.00 38.79 3.41
120 121 1.961277 CCGTGCTTCCACCACTCAC 60.961 63.158 0.00 0.00 38.79 3.51
123 124 2.358737 GCTTCCACCACTCACCGG 60.359 66.667 0.00 0.00 0.00 5.28
173 175 0.108804 ACCGCACCGAATGTAGAGTG 60.109 55.000 0.00 0.00 0.00 3.51
176 178 3.832704 CACCGAATGTAGAGTGCCA 57.167 52.632 0.00 0.00 0.00 4.92
177 179 2.093306 CACCGAATGTAGAGTGCCAA 57.907 50.000 0.00 0.00 0.00 4.52
199 201 6.918022 CCAACTAAAACCTGTTGAAGACAATC 59.082 38.462 7.33 0.00 44.29 2.67
217 219 5.945310 ACAATCTGGGCTTATACATGACAT 58.055 37.500 0.00 0.00 0.00 3.06
227 229 7.661437 GGGCTTATACATGACATTAAGTGATCA 59.339 37.037 0.00 0.00 0.00 2.92
238 240 7.336679 TGACATTAAGTGATCACATCCGAATTT 59.663 33.333 27.02 12.43 0.00 1.82
288 290 5.221702 TGGACAAAGATGATGTCTTCTGTCA 60.222 40.000 20.88 12.37 46.39 3.58
327 357 2.206515 TTTGCAATTGGTAGCCGGCG 62.207 55.000 23.20 4.86 0.00 6.46
343 373 1.440145 GGCGCCTGCTTTCCATAGTC 61.440 60.000 22.15 0.00 42.25 2.59
360 397 9.601810 TTCCATAGTCATGAGTACCATATACTT 57.398 33.333 12.50 0.00 34.45 2.24
361 398 9.601810 TCCATAGTCATGAGTACCATATACTTT 57.398 33.333 12.50 0.00 34.45 2.66
367 404 9.817809 GTCATGAGTACCATATACTTTTTCTGA 57.182 33.333 0.00 0.00 33.31 3.27
392 429 9.923143 GAAATACTAATGCAAAAGTAAAAGGGT 57.077 29.630 13.61 0.00 32.24 4.34
437 1801 5.163602 TGCCGCTTCTTGTTTTAAGAAAGAA 60.164 36.000 3.98 8.26 37.54 2.52
444 1808 7.027778 TCTTGTTTTAAGAAAGAAGAGGTGC 57.972 36.000 7.21 0.00 45.06 5.01
526 1891 3.115554 CGCAAGGCATATTTTAACTGGC 58.884 45.455 0.00 0.00 35.83 4.85
615 1988 3.256960 GCTTCTCACCCCACCCCA 61.257 66.667 0.00 0.00 0.00 4.96
617 1990 2.039298 TTCTCACCCCACCCCACA 60.039 61.111 0.00 0.00 0.00 4.17
870 2251 4.704833 GCTGCTCCCACTTCGCCA 62.705 66.667 0.00 0.00 0.00 5.69
930 2311 2.883253 GCCAGCGAGCGAGAGTTC 60.883 66.667 0.00 0.00 38.04 3.01
1292 2685 2.738643 CGCGCTCTCCCTTCTCATTTTA 60.739 50.000 5.56 0.00 0.00 1.52
1342 2737 2.109739 TGCGTTGGTTGTGCTCGTT 61.110 52.632 0.00 0.00 0.00 3.85
1343 2738 1.368850 GCGTTGGTTGTGCTCGTTC 60.369 57.895 0.00 0.00 0.00 3.95
1347 2742 1.940613 GTTGGTTGTGCTCGTTCTTCT 59.059 47.619 0.00 0.00 0.00 2.85
1458 2853 0.460987 GGCCTGATGAGTGAAGGACG 60.461 60.000 0.00 0.00 32.43 4.79
1467 2862 1.164041 AGTGAAGGACGGTTTTGCGG 61.164 55.000 0.00 0.00 0.00 5.69
1478 2873 2.545106 CGGTTTTGCGGTACAAGTACTT 59.455 45.455 1.12 1.12 40.06 2.24
1491 2886 4.778534 CAAGTACTTTGTAGGACGAGGA 57.221 45.455 5.07 0.00 40.42 3.71
1494 2889 4.727556 AGTACTTTGTAGGACGAGGAGCG 61.728 52.174 0.00 0.00 40.42 5.03
1517 2917 8.134895 AGCGTGTCAGAATTTTTCTTGAATTAA 58.865 29.630 0.00 0.00 38.11 1.40
1540 2940 7.538303 AACACACTTTTTAATCTGCTTTTGG 57.462 32.000 0.00 0.00 0.00 3.28
1582 2984 5.961395 CATTTTCATGCTGACTAATTGGC 57.039 39.130 0.00 0.00 0.00 4.52
1583 2985 5.412640 CATTTTCATGCTGACTAATTGGCA 58.587 37.500 0.00 0.00 39.06 4.92
1638 3047 6.942532 ACTGAGTGCTAAACAATGAAAAGA 57.057 33.333 0.00 0.00 0.00 2.52
1639 3048 6.963796 ACTGAGTGCTAAACAATGAAAAGAG 58.036 36.000 0.00 0.00 0.00 2.85
1640 3049 6.767902 ACTGAGTGCTAAACAATGAAAAGAGA 59.232 34.615 0.00 0.00 0.00 3.10
1641 3050 7.041508 ACTGAGTGCTAAACAATGAAAAGAGAG 60.042 37.037 0.00 0.00 0.00 3.20
1642 3051 6.992123 TGAGTGCTAAACAATGAAAAGAGAGA 59.008 34.615 0.00 0.00 0.00 3.10
1643 3052 7.172190 TGAGTGCTAAACAATGAAAAGAGAGAG 59.828 37.037 0.00 0.00 0.00 3.20
1644 3053 7.220030 AGTGCTAAACAATGAAAAGAGAGAGA 58.780 34.615 0.00 0.00 0.00 3.10
1645 3054 7.387397 AGTGCTAAACAATGAAAAGAGAGAGAG 59.613 37.037 0.00 0.00 0.00 3.20
1646 3055 7.386299 GTGCTAAACAATGAAAAGAGAGAGAGA 59.614 37.037 0.00 0.00 0.00 3.10
1647 3056 7.601886 TGCTAAACAATGAAAAGAGAGAGAGAG 59.398 37.037 0.00 0.00 0.00 3.20
1689 3100 2.013400 TGTCGAGCAAAGCTTGTTTCA 58.987 42.857 0.00 2.87 39.88 2.69
1693 3104 3.119673 TCGAGCAAAGCTTGTTTCACAAA 60.120 39.130 0.00 0.00 39.88 2.83
1697 3108 6.560251 CGAGCAAAGCTTGTTTCACAAATTAC 60.560 38.462 0.00 0.00 39.88 1.89
1698 3109 6.340522 AGCAAAGCTTGTTTCACAAATTACT 58.659 32.000 0.00 0.00 37.69 2.24
1701 3112 5.200368 AGCTTGTTTCACAAATTACTGGG 57.800 39.130 0.00 0.00 37.69 4.45
1718 3129 4.273318 ACTGGGGTCTTTTCTTATGATGC 58.727 43.478 0.00 0.00 0.00 3.91
1749 3160 7.163441 TGGATCATATCATTACTGGTGTGATG 58.837 38.462 9.80 0.00 42.43 3.07
1757 3168 2.191128 ACTGGTGTGATGAAAGGAGC 57.809 50.000 0.00 0.00 0.00 4.70
1762 3173 1.467734 GTGTGATGAAAGGAGCAGCAG 59.532 52.381 0.00 0.00 31.65 4.24
1772 3183 0.179051 GGAGCAGCAGGATGAAGGAG 60.179 60.000 0.00 0.00 39.69 3.69
1792 3203 2.029828 AGCTCGTGTTCTTCGAATGTCT 60.030 45.455 0.00 0.00 36.89 3.41
1793 3204 3.190744 AGCTCGTGTTCTTCGAATGTCTA 59.809 43.478 0.00 0.00 36.89 2.59
1805 3216 8.425577 TCTTCGAATGTCTATTCAAATCCTTC 57.574 34.615 0.00 0.00 42.27 3.46
1806 3217 7.495934 TCTTCGAATGTCTATTCAAATCCTTCC 59.504 37.037 0.00 0.00 42.27 3.46
1807 3218 6.889198 TCGAATGTCTATTCAAATCCTTCCT 58.111 36.000 0.00 0.00 42.27 3.36
1809 3220 7.829211 TCGAATGTCTATTCAAATCCTTCCTTT 59.171 33.333 0.00 0.00 42.27 3.11
1810 3221 8.125448 CGAATGTCTATTCAAATCCTTCCTTTC 58.875 37.037 0.00 0.00 42.27 2.62
1811 3222 7.888250 ATGTCTATTCAAATCCTTCCTTTCC 57.112 36.000 0.00 0.00 0.00 3.13
1812 3223 7.032598 TGTCTATTCAAATCCTTCCTTTCCT 57.967 36.000 0.00 0.00 0.00 3.36
1813 3224 7.470192 TGTCTATTCAAATCCTTCCTTTCCTT 58.530 34.615 0.00 0.00 0.00 3.36
1814 3225 7.394359 TGTCTATTCAAATCCTTCCTTTCCTTG 59.606 37.037 0.00 0.00 0.00 3.61
1816 3227 8.170061 TCTATTCAAATCCTTCCTTTCCTTGAA 58.830 33.333 0.00 0.00 36.19 2.69
1817 3228 6.405278 TTCAAATCCTTCCTTTCCTTGAAC 57.595 37.500 0.00 0.00 0.00 3.18
1818 3229 5.705400 TCAAATCCTTCCTTTCCTTGAACT 58.295 37.500 0.00 0.00 0.00 3.01
1819 3230 6.136155 TCAAATCCTTCCTTTCCTTGAACTT 58.864 36.000 0.00 0.00 0.00 2.66
1820 3231 6.040842 TCAAATCCTTCCTTTCCTTGAACTTG 59.959 38.462 0.00 0.00 0.00 3.16
1821 3232 4.788925 TCCTTCCTTTCCTTGAACTTGA 57.211 40.909 0.00 0.00 0.00 3.02
1822 3233 4.718961 TCCTTCCTTTCCTTGAACTTGAG 58.281 43.478 0.00 0.00 0.00 3.02
1823 3234 3.254411 CCTTCCTTTCCTTGAACTTGAGC 59.746 47.826 0.00 0.00 0.00 4.26
1824 3235 3.576078 TCCTTTCCTTGAACTTGAGCA 57.424 42.857 0.00 0.00 0.00 4.26
1825 3236 4.104383 TCCTTTCCTTGAACTTGAGCAT 57.896 40.909 0.00 0.00 0.00 3.79
1826 3237 3.822735 TCCTTTCCTTGAACTTGAGCATG 59.177 43.478 0.00 0.00 0.00 4.06
1827 3238 3.822735 CCTTTCCTTGAACTTGAGCATGA 59.177 43.478 0.00 0.00 0.00 3.07
1828 3239 4.320788 CCTTTCCTTGAACTTGAGCATGAC 60.321 45.833 0.00 0.00 0.00 3.06
1829 3240 3.777106 TCCTTGAACTTGAGCATGACT 57.223 42.857 0.00 0.00 0.00 3.41
1830 3241 3.405831 TCCTTGAACTTGAGCATGACTG 58.594 45.455 0.00 0.00 0.00 3.51
1831 3242 3.144506 CCTTGAACTTGAGCATGACTGT 58.855 45.455 0.00 0.00 0.00 3.55
1832 3243 4.040339 TCCTTGAACTTGAGCATGACTGTA 59.960 41.667 0.00 0.00 0.00 2.74
1833 3244 4.756642 CCTTGAACTTGAGCATGACTGTAA 59.243 41.667 0.00 0.00 0.00 2.41
1834 3245 5.239306 CCTTGAACTTGAGCATGACTGTAAA 59.761 40.000 0.00 0.00 0.00 2.01
1835 3246 6.072286 CCTTGAACTTGAGCATGACTGTAAAT 60.072 38.462 0.00 0.00 0.00 1.40
1836 3247 6.882610 TGAACTTGAGCATGACTGTAAATT 57.117 33.333 0.00 0.00 0.00 1.82
1837 3248 6.902341 TGAACTTGAGCATGACTGTAAATTC 58.098 36.000 0.00 0.00 0.00 2.17
1838 3249 6.486320 TGAACTTGAGCATGACTGTAAATTCA 59.514 34.615 0.00 1.19 0.00 2.57
1839 3250 6.246420 ACTTGAGCATGACTGTAAATTCAC 57.754 37.500 0.00 0.00 0.00 3.18
1840 3251 5.182001 ACTTGAGCATGACTGTAAATTCACC 59.818 40.000 0.00 0.00 0.00 4.02
1842 3253 4.263462 TGAGCATGACTGTAAATTCACCCT 60.263 41.667 0.00 0.00 0.00 4.34
1846 3257 5.634859 GCATGACTGTAAATTCACCCTTTTG 59.365 40.000 0.00 0.00 0.00 2.44
1847 3258 6.738453 GCATGACTGTAAATTCACCCTTTTGT 60.738 38.462 0.00 0.00 0.00 2.83
1849 3260 6.568869 TGACTGTAAATTCACCCTTTTGTTG 58.431 36.000 0.00 0.00 0.00 3.33
1963 3374 7.818930 ACTGAAACATTTTCTGTCATTTGTTGT 59.181 29.630 5.61 0.00 36.98 3.32
1968 3379 6.980397 ACATTTTCTGTCATTTGTTGTTCCTC 59.020 34.615 0.00 0.00 29.94 3.71
1992 3403 7.096551 TCGTCAATGTGATCAAGTTCTAATCA 58.903 34.615 0.00 0.00 0.00 2.57
2006 3417 6.357367 AGTTCTAATCAAACACTGACCTGTT 58.643 36.000 0.00 0.00 36.69 3.16
2161 3575 8.017946 CACGATGAGAATACTCGAAGATATTGA 58.982 37.037 0.00 0.00 45.25 2.57
2316 3730 4.058817 AGAACTTCGTGCTTTGGTAAGAG 58.941 43.478 0.00 0.00 32.92 2.85
2322 3736 2.744202 CGTGCTTTGGTAAGAGCTCAAT 59.256 45.455 17.77 6.90 39.60 2.57
2537 3965 7.969536 TGTCCTTTCTCAGTTCTTCATTAAG 57.030 36.000 0.00 0.00 0.00 1.85
2619 4047 2.930562 GAGCCCCAGGTCACAGGT 60.931 66.667 0.00 0.00 40.37 4.00
2641 4069 0.459237 CTAGGACAAGCAGTGGAGCG 60.459 60.000 0.00 0.00 40.15 5.03
2677 4105 3.618351 TGAAAGTAGAGGTACCGAGGAG 58.382 50.000 6.18 0.00 0.00 3.69
2785 4213 7.040755 CCTTGTGTTGTGACATTTAATACTGGA 60.041 37.037 0.00 0.00 38.23 3.86
2874 4302 3.981071 ACATTTGGCAGTGCTCTAGTA 57.019 42.857 16.11 0.00 0.00 1.82
3100 4528 1.202359 GGCAACAAAAACGCTGAAGGA 60.202 47.619 0.00 0.00 0.00 3.36
3205 4633 7.967908 TCTTTCTTTCAGTCTCTTTCTGGTAT 58.032 34.615 0.00 0.00 34.15 2.73
3264 4692 4.524316 TTTTTGGTCTCAAGATGGCATG 57.476 40.909 3.81 0.00 33.98 4.06
3265 4693 2.133281 TTGGTCTCAAGATGGCATGG 57.867 50.000 3.81 0.00 0.00 3.66
3276 4704 5.104151 TCAAGATGGCATGGGTCAATAACTA 60.104 40.000 3.81 0.00 28.67 2.24
3277 4705 5.387113 AGATGGCATGGGTCAATAACTAA 57.613 39.130 3.81 0.00 28.67 2.24
3348 4776 0.035739 TTTTGCGGGGGACAGTAGAC 59.964 55.000 0.00 0.00 0.00 2.59
3358 4786 3.000727 GGGACAGTAGACATTTCCAACG 58.999 50.000 0.00 0.00 0.00 4.10
3378 4806 1.335597 GGGTCAGTTTAAGTTTGGCGC 60.336 52.381 0.00 0.00 0.00 6.53
3440 4870 1.425412 CAATTGCTGCCAGCTTGTTC 58.575 50.000 18.96 0.00 42.97 3.18
3442 4872 0.828762 ATTGCTGCCAGCTTGTTCCA 60.829 50.000 18.96 0.00 42.97 3.53
3603 5036 8.184304 AGATACCATTAGCTTACTTGTAGGAG 57.816 38.462 0.00 0.00 0.00 3.69
3604 5037 8.005388 AGATACCATTAGCTTACTTGTAGGAGA 58.995 37.037 0.00 0.00 0.00 3.71
3605 5038 6.472686 ACCATTAGCTTACTTGTAGGAGAG 57.527 41.667 0.00 0.00 0.00 3.20
3652 5085 7.386059 ACCAAAATGTTGAATGGGAGTATTTC 58.614 34.615 0.00 0.00 36.83 2.17
3663 5096 5.269554 TGGGAGTATTTCCTGGACAAATT 57.730 39.130 0.00 0.00 45.98 1.82
3666 5099 5.125578 GGGAGTATTTCCTGGACAAATTCAC 59.874 44.000 0.00 0.00 45.98 3.18
3709 5142 2.492025 AGATGAGTTGCTTATGGGGGA 58.508 47.619 0.00 0.00 0.00 4.81
3724 5157 2.826674 GGGGACATTCCTCCATTGAA 57.173 50.000 0.00 0.00 36.57 2.69
3725 5158 2.659428 GGGGACATTCCTCCATTGAAG 58.341 52.381 0.00 0.00 36.57 3.02
3737 5170 4.142315 CCTCCATTGAAGCCACAACATTAG 60.142 45.833 0.00 0.00 32.50 1.73
3748 5181 4.386652 GCCACAACATTAGCAATTGTTCAG 59.613 41.667 7.40 0.00 34.36 3.02
3761 5194 8.089115 AGCAATTGTTCAGTTCTTAAGAGTAC 57.911 34.615 7.40 2.21 0.00 2.73
3762 5195 7.934120 AGCAATTGTTCAGTTCTTAAGAGTACT 59.066 33.333 7.40 4.66 34.27 2.73
3763 5196 8.012241 GCAATTGTTCAGTTCTTAAGAGTACTG 58.988 37.037 23.09 23.09 46.66 2.74
3764 5197 7.659652 ATTGTTCAGTTCTTAAGAGTACTGC 57.340 36.000 23.82 15.41 45.59 4.40
3772 5205 5.818678 TCTTAAGAGTACTGCCCTTTTCA 57.181 39.130 0.00 0.00 0.00 2.69
3786 5219 6.862209 TGCCCTTTTCAATTGTACATATCAC 58.138 36.000 5.13 0.00 0.00 3.06
3795 5228 5.929697 ATTGTACATATCACGGATTGCTG 57.070 39.130 0.00 0.00 0.00 4.41
3800 5233 4.375272 ACATATCACGGATTGCTGAAGAG 58.625 43.478 0.00 0.00 0.00 2.85
3802 5235 0.250234 TCACGGATTGCTGAAGAGGG 59.750 55.000 0.00 0.00 0.00 4.30
3813 5246 0.178891 TGAAGAGGGCCTGAGGTCTT 60.179 55.000 12.95 7.92 31.85 3.01
3822 5255 1.352083 CCTGAGGTCTTGGGAGTTGA 58.648 55.000 0.00 0.00 0.00 3.18
3827 5260 0.329596 GGTCTTGGGAGTTGATGGCT 59.670 55.000 0.00 0.00 0.00 4.75
3847 5280 0.698238 TGACCATGTTTCTGGGGAGG 59.302 55.000 0.00 0.00 40.85 4.30
3869 5302 3.251972 GCATTTGATTAGCAGCTAGTCCC 59.748 47.826 19.42 0.36 0.00 4.46
3870 5303 4.712476 CATTTGATTAGCAGCTAGTCCCT 58.288 43.478 19.42 4.37 0.00 4.20
3927 5360 3.372206 CCTTAAATGCAAGACAGAGTCCG 59.628 47.826 0.00 0.00 32.18 4.79
3936 5369 2.179517 CAGAGTCCGCAGTCGTCC 59.820 66.667 0.00 0.00 0.00 4.79
3952 5385 5.989777 CAGTCGTCCCTCTTTCTTTTCTTAA 59.010 40.000 0.00 0.00 0.00 1.85
3976 5409 2.046507 GTCAGTGCTCCTGCCCTG 60.047 66.667 0.00 0.00 44.29 4.45
4000 5433 2.310538 CTTCAGAAAAACACAGCCCCT 58.689 47.619 0.00 0.00 0.00 4.79
4002 5435 3.586470 TCAGAAAAACACAGCCCCTTA 57.414 42.857 0.00 0.00 0.00 2.69
4104 5539 1.274447 GACTGTACGGGCAGGTTAGTT 59.726 52.381 1.46 0.00 40.59 2.24
4218 5654 6.930475 AGGATATACTTGGGGTAGAAGTGTA 58.070 40.000 0.00 0.00 35.30 2.90
4229 5665 7.359849 TGGGGTAGAAGTGTATATGTCTTAGT 58.640 38.462 0.00 0.00 0.00 2.24
4243 5679 5.073311 TGTCTTAGTATGCCAGAACTCAC 57.927 43.478 0.00 0.00 0.00 3.51
4274 5710 1.012086 CATGATCCGCCACTCACAAG 58.988 55.000 0.00 0.00 0.00 3.16
4296 5743 8.137437 ACAAGACTTGTTTACCATCTCAAAATG 58.863 33.333 15.23 0.00 42.22 2.32
4308 5756 7.529880 CCATCTCAAAATGGTTTTATCTTGC 57.470 36.000 0.00 0.00 41.18 4.01
4315 5763 9.770097 TCAAAATGGTTTTATCTTGCAATTGTA 57.230 25.926 7.40 0.00 0.00 2.41
4321 5769 8.250332 TGGTTTTATCTTGCAATTGTATTCCTC 58.750 33.333 7.40 0.00 0.00 3.71
4338 5786 6.939132 ATTCCTCAAGACAGCAAATCTATG 57.061 37.500 0.00 0.00 0.00 2.23
4340 5788 4.225942 TCCTCAAGACAGCAAATCTATGGT 59.774 41.667 0.00 0.00 0.00 3.55
4386 5834 6.389906 TGCATATATGAGGAAGTATGTGTCG 58.610 40.000 17.10 0.00 0.00 4.35
4457 5905 9.817809 TGATTAAGGTGACATACTTGATTAGTC 57.182 33.333 5.82 0.00 38.33 2.59
4459 5907 9.823647 ATTAAGGTGACATACTTGATTAGTCTG 57.176 33.333 5.82 0.00 38.33 3.51
4739 6190 1.280133 CTGATCAAGCTGAGGTGGGAA 59.720 52.381 0.00 0.00 0.00 3.97
4749 6200 3.084786 CTGAGGTGGGAACTTTGATTCC 58.915 50.000 0.00 0.00 46.52 3.01
4758 6209 5.163353 TGGGAACTTTGATTCCTTTTTCCAC 60.163 40.000 4.63 0.00 46.46 4.02
4829 6329 4.083802 GCTGTCTGTTCACTACACCAAATC 60.084 45.833 0.00 0.00 32.10 2.17
4839 6339 9.391006 GTTCACTACACCAAATCCATAAGAATA 57.609 33.333 0.00 0.00 0.00 1.75
4912 6412 6.197842 GCTTGGAAAATAAGAATGCAAGATCG 59.802 38.462 9.90 0.00 42.85 3.69
4933 6433 0.032130 TGTCTTGTGGAGCTCGTCAC 59.968 55.000 14.22 14.22 34.71 3.67
4953 6453 6.455113 CGTCACAGTGCAATAATAACAGGTAC 60.455 42.308 0.00 0.00 0.00 3.34
4955 6879 7.762615 GTCACAGTGCAATAATAACAGGTACTA 59.237 37.037 0.00 0.00 36.02 1.82
4973 6897 8.204160 CAGGTACTATATTGTTGAGACATGGAA 58.796 37.037 0.00 0.00 36.02 3.53
4976 6900 9.035607 GTACTATATTGTTGAGACATGGAAGTG 57.964 37.037 0.00 0.00 35.29 3.16
4980 6904 3.732212 TGTTGAGACATGGAAGTGACAG 58.268 45.455 0.00 0.00 0.00 3.51
4982 6906 4.130118 GTTGAGACATGGAAGTGACAGTT 58.870 43.478 0.00 0.00 0.00 3.16
4983 6907 3.732212 TGAGACATGGAAGTGACAGTTG 58.268 45.455 0.00 0.00 0.00 3.16
4984 6908 2.481952 GAGACATGGAAGTGACAGTTGC 59.518 50.000 7.53 7.53 0.00 4.17
4985 6909 2.105477 AGACATGGAAGTGACAGTTGCT 59.895 45.455 14.67 0.00 0.00 3.91
4986 6910 2.224606 ACATGGAAGTGACAGTTGCTG 58.775 47.619 14.67 12.19 37.52 4.41
4988 6912 3.181455 ACATGGAAGTGACAGTTGCTGTA 60.181 43.478 14.67 0.00 45.44 2.74
4989 6913 3.769739 TGGAAGTGACAGTTGCTGTAT 57.230 42.857 14.67 0.00 45.44 2.29
4990 6914 4.085357 TGGAAGTGACAGTTGCTGTATT 57.915 40.909 14.67 0.00 45.44 1.89
4991 6915 4.460263 TGGAAGTGACAGTTGCTGTATTT 58.540 39.130 14.67 0.00 45.44 1.40
4992 6916 4.515191 TGGAAGTGACAGTTGCTGTATTTC 59.485 41.667 14.67 6.56 45.44 2.17
4993 6917 4.757149 GGAAGTGACAGTTGCTGTATTTCT 59.243 41.667 7.24 0.00 45.44 2.52
4994 6918 5.239525 GGAAGTGACAGTTGCTGTATTTCTT 59.760 40.000 7.24 5.05 45.44 2.52
4995 6919 6.238759 GGAAGTGACAGTTGCTGTATTTCTTT 60.239 38.462 7.24 0.00 45.44 2.52
4996 6920 6.064846 AGTGACAGTTGCTGTATTTCTTTG 57.935 37.500 1.43 0.00 45.44 2.77
4997 6921 5.822519 AGTGACAGTTGCTGTATTTCTTTGA 59.177 36.000 1.43 0.00 45.44 2.69
4998 6922 6.488006 AGTGACAGTTGCTGTATTTCTTTGAT 59.512 34.615 1.43 0.00 45.44 2.57
4999 6923 7.013655 AGTGACAGTTGCTGTATTTCTTTGATT 59.986 33.333 1.43 0.00 45.44 2.57
5000 6924 7.324616 GTGACAGTTGCTGTATTTCTTTGATTC 59.675 37.037 1.43 0.00 45.44 2.52
5001 6925 7.229306 TGACAGTTGCTGTATTTCTTTGATTCT 59.771 33.333 1.43 0.00 45.44 2.40
5002 6926 8.621532 ACAGTTGCTGTATTTCTTTGATTCTA 57.378 30.769 0.00 0.00 43.46 2.10
5003 6927 9.066892 ACAGTTGCTGTATTTCTTTGATTCTAA 57.933 29.630 0.00 0.00 43.46 2.10
5004 6928 9.334693 CAGTTGCTGTATTTCTTTGATTCTAAC 57.665 33.333 0.00 0.00 0.00 2.34
5005 6929 9.066892 AGTTGCTGTATTTCTTTGATTCTAACA 57.933 29.630 0.00 0.00 0.00 2.41
5006 6930 9.118236 GTTGCTGTATTTCTTTGATTCTAACAC 57.882 33.333 0.00 0.00 0.00 3.32
5007 6931 8.621532 TGCTGTATTTCTTTGATTCTAACACT 57.378 30.769 0.00 0.00 0.00 3.55
5008 6932 9.066892 TGCTGTATTTCTTTGATTCTAACACTT 57.933 29.630 0.00 0.00 0.00 3.16
5021 6945 9.932207 TGATTCTAACACTTACGAAATTTCCTA 57.068 29.630 12.54 2.87 0.00 2.94
5029 6953 7.876068 ACACTTACGAAATTTCCTACAGATGAA 59.124 33.333 12.54 0.00 0.00 2.57
5230 7155 3.080765 TGCATCGTCCCCGTGGAT 61.081 61.111 0.00 0.00 44.28 3.41
5334 7259 3.302347 AAGGAGGAGCCGAACTGCG 62.302 63.158 0.00 0.00 42.62 5.18
5432 7361 1.069358 TGACGGTGCATACAGTGACAA 59.931 47.619 0.00 0.00 35.32 3.18
5445 7374 5.426689 ACAGTGACAATGTGTATCCATCT 57.573 39.130 7.91 0.00 0.00 2.90
5449 7378 8.704668 ACAGTGACAATGTGTATCCATCTATTA 58.295 33.333 7.91 0.00 0.00 0.98
5450 7379 9.546428 CAGTGACAATGTGTATCCATCTATTAA 57.454 33.333 0.00 0.00 0.00 1.40
5464 7393 7.754624 TCCATCTATTAATTATTCCCTGTGCA 58.245 34.615 0.00 0.00 0.00 4.57
5465 7394 7.665559 TCCATCTATTAATTATTCCCTGTGCAC 59.334 37.037 10.75 10.75 0.00 4.57
5466 7395 7.667219 CCATCTATTAATTATTCCCTGTGCACT 59.333 37.037 19.41 0.00 0.00 4.40
5519 7448 3.851098 TGTATTGCGCTGTGTGTATACA 58.149 40.909 9.73 0.08 0.00 2.29
5656 7587 4.083377 GGCCGAAAACTACCAAAAATACGA 60.083 41.667 0.00 0.00 0.00 3.43
5719 7650 1.070038 TGACCGTTTTAACCGCGATC 58.930 50.000 8.23 0.00 0.00 3.69
5888 7831 2.716017 CCGAGCTCACTCCACTCCC 61.716 68.421 15.40 0.00 40.03 4.30
5923 7871 4.054671 CTGCTTCTGTTTCTTCTTCTCGT 58.945 43.478 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.875691 GACAAAAATCAAAATAGGGCTCTAATT 57.124 29.630 0.00 0.00 0.00 1.40
7 8 8.478066 GGACAAAAATCAAAATAGGGCTCTAAT 58.522 33.333 0.00 0.00 0.00 1.73
9 10 6.379988 GGGACAAAAATCAAAATAGGGCTCTA 59.620 38.462 0.00 0.00 0.00 2.43
10 11 5.187772 GGGACAAAAATCAAAATAGGGCTCT 59.812 40.000 0.00 0.00 0.00 4.09
11 12 5.419542 GGGACAAAAATCAAAATAGGGCTC 58.580 41.667 0.00 0.00 0.00 4.70
12 13 4.081697 CGGGACAAAAATCAAAATAGGGCT 60.082 41.667 0.00 0.00 0.00 5.19
13 14 4.180817 CGGGACAAAAATCAAAATAGGGC 58.819 43.478 0.00 0.00 0.00 5.19
14 15 4.382577 CCCGGGACAAAAATCAAAATAGGG 60.383 45.833 18.48 0.00 0.00 3.53
15 16 4.754322 CCCGGGACAAAAATCAAAATAGG 58.246 43.478 18.48 0.00 0.00 2.57
16 17 4.180817 GCCCGGGACAAAAATCAAAATAG 58.819 43.478 29.31 0.00 0.00 1.73
17 18 3.055747 GGCCCGGGACAAAAATCAAAATA 60.056 43.478 29.31 0.00 0.00 1.40
18 19 2.290008 GGCCCGGGACAAAAATCAAAAT 60.290 45.455 29.31 0.00 0.00 1.82
19 20 1.070914 GGCCCGGGACAAAAATCAAAA 59.929 47.619 29.31 0.00 0.00 2.44
20 21 0.682292 GGCCCGGGACAAAAATCAAA 59.318 50.000 29.31 0.00 0.00 2.69
21 22 1.188871 GGGCCCGGGACAAAAATCAA 61.189 55.000 32.17 0.00 0.00 2.57
22 23 1.608046 GGGCCCGGGACAAAAATCA 60.608 57.895 32.17 0.00 0.00 2.57
23 24 2.355986 GGGGCCCGGGACAAAAATC 61.356 63.158 32.17 9.53 0.00 2.17
24 25 2.284331 GGGGCCCGGGACAAAAAT 60.284 61.111 32.17 0.00 0.00 1.82
25 26 4.624628 GGGGGCCCGGGACAAAAA 62.625 66.667 32.17 0.00 0.00 1.94
30 31 3.916438 AAATTTGGGGGCCCGGGAC 62.916 63.158 29.31 25.86 39.42 4.46
31 32 3.606242 AAATTTGGGGGCCCGGGA 61.606 61.111 29.31 0.00 39.42 5.14
32 33 3.080765 GAAATTTGGGGGCCCGGG 61.081 66.667 19.09 19.09 39.42 5.73
33 34 2.038813 AGAAATTTGGGGGCCCGG 59.961 61.111 17.79 0.00 39.42 5.73
34 35 2.358372 CCAGAAATTTGGGGGCCCG 61.358 63.158 17.79 0.00 39.42 6.13
35 36 0.977627 CTCCAGAAATTTGGGGGCCC 60.978 60.000 15.76 15.76 38.81 5.80
36 37 0.041090 TCTCCAGAAATTTGGGGGCC 59.959 55.000 0.00 0.00 39.32 5.80
37 38 1.186200 GTCTCCAGAAATTTGGGGGC 58.814 55.000 0.00 0.00 39.32 5.80
38 39 1.463674 CGTCTCCAGAAATTTGGGGG 58.536 55.000 0.00 0.00 39.32 5.40
39 40 1.463674 CCGTCTCCAGAAATTTGGGG 58.536 55.000 0.00 0.00 40.27 4.96
40 41 0.811281 GCCGTCTCCAGAAATTTGGG 59.189 55.000 0.00 0.00 38.81 4.12
41 42 0.811281 GGCCGTCTCCAGAAATTTGG 59.189 55.000 0.00 0.00 39.70 3.28
42 43 0.811281 GGGCCGTCTCCAGAAATTTG 59.189 55.000 0.00 0.00 0.00 2.32
43 44 0.698818 AGGGCCGTCTCCAGAAATTT 59.301 50.000 0.00 0.00 0.00 1.82
44 45 0.035056 CAGGGCCGTCTCCAGAAATT 60.035 55.000 0.00 0.00 0.00 1.82
45 46 1.604378 CAGGGCCGTCTCCAGAAAT 59.396 57.895 0.00 0.00 0.00 2.17
46 47 2.592993 CCAGGGCCGTCTCCAGAAA 61.593 63.158 0.00 0.00 0.00 2.52
47 48 2.449967 TACCAGGGCCGTCTCCAGAA 62.450 60.000 0.00 0.00 0.00 3.02
48 49 2.856039 CTACCAGGGCCGTCTCCAGA 62.856 65.000 0.00 0.00 0.00 3.86
49 50 2.363795 TACCAGGGCCGTCTCCAG 60.364 66.667 0.00 0.00 0.00 3.86
50 51 2.363795 CTACCAGGGCCGTCTCCA 60.364 66.667 0.00 0.00 0.00 3.86
51 52 3.851128 GCTACCAGGGCCGTCTCC 61.851 72.222 0.00 0.00 0.00 3.71
52 53 3.075005 TGCTACCAGGGCCGTCTC 61.075 66.667 0.00 0.00 0.00 3.36
53 54 3.077556 CTGCTACCAGGGCCGTCT 61.078 66.667 0.00 0.00 35.38 4.18
54 55 4.840005 GCTGCTACCAGGGCCGTC 62.840 72.222 0.00 0.00 39.54 4.79
57 58 4.803908 GGTGCTGCTACCAGGGCC 62.804 72.222 13.89 0.00 40.54 5.80
58 59 4.033776 TGGTGCTGCTACCAGGGC 62.034 66.667 16.47 0.00 45.46 5.19
64 65 1.376037 GGTGAGGTGGTGCTGCTAC 60.376 63.158 0.00 0.00 0.00 3.58
65 66 2.942796 CGGTGAGGTGGTGCTGCTA 61.943 63.158 0.00 0.00 0.00 3.49
66 67 4.320456 CGGTGAGGTGGTGCTGCT 62.320 66.667 0.00 0.00 0.00 4.24
71 72 4.248842 TGTGGCGGTGAGGTGGTG 62.249 66.667 0.00 0.00 0.00 4.17
72 73 4.250305 GTGTGGCGGTGAGGTGGT 62.250 66.667 0.00 0.00 0.00 4.16
105 106 2.425592 CGGTGAGTGGTGGAAGCA 59.574 61.111 0.00 0.00 45.41 3.91
108 109 3.948719 GGCCGGTGAGTGGTGGAA 61.949 66.667 1.90 0.00 0.00 3.53
173 175 4.097286 TGTCTTCAACAGGTTTTAGTTGGC 59.903 41.667 0.00 0.00 43.91 4.52
174 176 5.828299 TGTCTTCAACAGGTTTTAGTTGG 57.172 39.130 0.00 0.00 43.91 3.77
175 177 7.645340 CAGATTGTCTTCAACAGGTTTTAGTTG 59.355 37.037 0.00 0.00 44.84 3.16
176 178 7.201821 CCAGATTGTCTTCAACAGGTTTTAGTT 60.202 37.037 0.00 0.00 39.58 2.24
177 179 6.263168 CCAGATTGTCTTCAACAGGTTTTAGT 59.737 38.462 0.00 0.00 39.58 2.24
199 201 6.992123 TCACTTAATGTCATGTATAAGCCCAG 59.008 38.462 0.00 0.00 0.00 4.45
217 219 6.414732 AGGAAATTCGGATGTGATCACTTAA 58.585 36.000 25.55 11.73 0.00 1.85
247 249 7.882791 TCTTTGTCCATTGTAGAAGAATTAGCA 59.117 33.333 0.00 0.00 0.00 3.49
252 254 8.900781 CATCATCTTTGTCCATTGTAGAAGAAT 58.099 33.333 0.00 0.00 0.00 2.40
257 259 6.950842 AGACATCATCTTTGTCCATTGTAGA 58.049 36.000 0.46 0.00 43.62 2.59
300 326 5.863397 CGGCTACCAATTGCAAATATAATGG 59.137 40.000 1.71 8.08 0.00 3.16
314 340 4.856801 CAGGCGCCGGCTACCAAT 62.857 66.667 30.28 13.35 36.44 3.16
327 357 2.877168 CTCATGACTATGGAAAGCAGGC 59.123 50.000 0.00 0.00 34.97 4.85
367 404 9.923143 GACCCTTTTACTTTTGCATTAGTATTT 57.077 29.630 8.69 0.00 0.00 1.40
437 1801 1.521457 CACACACACACGCACCTCT 60.521 57.895 0.00 0.00 0.00 3.69
438 1802 3.014036 CACACACACACGCACCTC 58.986 61.111 0.00 0.00 0.00 3.85
440 1804 4.589700 CGCACACACACACGCACC 62.590 66.667 0.00 0.00 0.00 5.01
442 1806 3.559344 GACGCACACACACACGCA 61.559 61.111 0.00 0.00 0.00 5.24
444 1808 1.201578 GATGACGCACACACACACG 59.798 57.895 0.00 0.00 0.00 4.49
659 2040 3.938637 GAAGGGCGGAGGTTTGGGG 62.939 68.421 0.00 0.00 0.00 4.96
663 2044 1.423794 TTCTGGAAGGGCGGAGGTTT 61.424 55.000 0.00 0.00 0.00 3.27
870 2251 0.827507 AGATGGCGTTGGTTTGGCTT 60.828 50.000 0.00 0.00 0.00 4.35
926 2307 3.816524 CGCCCTCGCTCTCGAACT 61.817 66.667 0.00 0.00 44.98 3.01
927 2308 2.992407 GATCGCCCTCGCTCTCGAAC 62.992 65.000 0.00 0.00 44.98 3.95
928 2309 2.829003 ATCGCCCTCGCTCTCGAA 60.829 61.111 0.00 0.00 44.98 3.71
929 2310 3.280634 GATCGCCCTCGCTCTCGA 61.281 66.667 0.00 0.00 43.28 4.04
930 2311 4.674904 CGATCGCCCTCGCTCTCG 62.675 72.222 0.26 0.00 35.26 4.04
931 2312 3.248630 CTCGATCGCCCTCGCTCTC 62.249 68.421 11.09 0.00 38.52 3.20
932 2313 3.283684 CTCGATCGCCCTCGCTCT 61.284 66.667 11.09 0.00 38.52 4.09
933 2314 4.335584 CCTCGATCGCCCTCGCTC 62.336 72.222 11.09 0.00 38.52 5.03
936 2317 3.486252 GAACCCTCGATCGCCCTCG 62.486 68.421 11.09 0.00 39.99 4.63
937 2318 2.417936 GAACCCTCGATCGCCCTC 59.582 66.667 11.09 0.00 0.00 4.30
1292 2685 3.490761 CCAGAACACAAACGGAGCAAAAT 60.491 43.478 0.00 0.00 0.00 1.82
1458 2853 4.201940 ACAAAGTACTTGTACCGCAAAACC 60.202 41.667 9.34 0.00 46.75 3.27
1467 2862 5.182001 TCCTCGTCCTACAAAGTACTTGTAC 59.818 44.000 9.34 2.94 46.75 2.90
1486 2881 1.714794 AAATTCTGACACGCTCCTCG 58.285 50.000 0.00 0.00 45.38 4.63
1487 2882 3.748568 AGAAAAATTCTGACACGCTCCTC 59.251 43.478 0.00 0.00 38.91 3.71
1490 2885 5.095691 TCAAGAAAAATTCTGACACGCTC 57.904 39.130 0.00 0.00 40.59 5.03
1491 2886 5.499139 TTCAAGAAAAATTCTGACACGCT 57.501 34.783 0.00 0.00 40.59 5.07
1517 2917 6.872920 TCCAAAAGCAGATTAAAAAGTGTGT 58.127 32.000 0.00 0.00 0.00 3.72
1526 2926 6.093495 CGGTCACTATTCCAAAAGCAGATTAA 59.907 38.462 0.00 0.00 0.00 1.40
1527 2927 5.584649 CGGTCACTATTCCAAAAGCAGATTA 59.415 40.000 0.00 0.00 0.00 1.75
1540 2940 3.064207 TGCAACTTCACGGTCACTATTC 58.936 45.455 0.00 0.00 0.00 1.75
1573 2974 4.644685 ACACAACTTCACTTGCCAATTAGT 59.355 37.500 0.00 0.00 0.00 2.24
1582 2984 2.159254 CCCAACCACACAACTTCACTTG 60.159 50.000 0.00 0.00 0.00 3.16
1583 2985 2.099405 CCCAACCACACAACTTCACTT 58.901 47.619 0.00 0.00 0.00 3.16
1638 3047 3.713764 CCTTCCTCTCTCTCTCTCTCTCT 59.286 52.174 0.00 0.00 0.00 3.10
1639 3048 3.181450 CCCTTCCTCTCTCTCTCTCTCTC 60.181 56.522 0.00 0.00 0.00 3.20
1640 3049 2.780010 CCCTTCCTCTCTCTCTCTCTCT 59.220 54.545 0.00 0.00 0.00 3.10
1641 3050 2.509964 ACCCTTCCTCTCTCTCTCTCTC 59.490 54.545 0.00 0.00 0.00 3.20
1642 3051 2.573463 ACCCTTCCTCTCTCTCTCTCT 58.427 52.381 0.00 0.00 0.00 3.10
1643 3052 3.382083 AACCCTTCCTCTCTCTCTCTC 57.618 52.381 0.00 0.00 0.00 3.20
1644 3053 3.594232 TGTAACCCTTCCTCTCTCTCTCT 59.406 47.826 0.00 0.00 0.00 3.10
1645 3054 3.970842 TGTAACCCTTCCTCTCTCTCTC 58.029 50.000 0.00 0.00 0.00 3.20
1646 3055 4.618378 ATGTAACCCTTCCTCTCTCTCT 57.382 45.455 0.00 0.00 0.00 3.10
1647 3056 5.046231 ACAAATGTAACCCTTCCTCTCTCTC 60.046 44.000 0.00 0.00 0.00 3.20
1689 3100 7.947890 TCATAAGAAAAGACCCCAGTAATTTGT 59.052 33.333 0.00 0.00 0.00 2.83
1693 3104 6.547510 GCATCATAAGAAAAGACCCCAGTAAT 59.452 38.462 0.00 0.00 0.00 1.89
1697 3108 4.530875 AGCATCATAAGAAAAGACCCCAG 58.469 43.478 0.00 0.00 0.00 4.45
1698 3109 4.228210 AGAGCATCATAAGAAAAGACCCCA 59.772 41.667 0.00 0.00 37.82 4.96
1718 3129 7.764901 CACCAGTAATGATATGATCCATGAGAG 59.235 40.741 0.00 0.00 0.00 3.20
1749 3160 2.015587 CTTCATCCTGCTGCTCCTTTC 58.984 52.381 0.00 0.00 0.00 2.62
1750 3161 1.340795 CCTTCATCCTGCTGCTCCTTT 60.341 52.381 0.00 0.00 0.00 3.11
1757 3168 0.530211 CGAGCTCCTTCATCCTGCTG 60.530 60.000 8.47 0.00 33.83 4.41
1762 3173 1.205893 AGAACACGAGCTCCTTCATCC 59.794 52.381 8.47 0.00 0.00 3.51
1772 3183 2.329379 AGACATTCGAAGAACACGAGC 58.671 47.619 3.35 0.00 45.90 5.03
1792 3203 7.950124 AGTTCAAGGAAAGGAAGGATTTGAATA 59.050 33.333 0.00 0.00 36.05 1.75
1793 3204 6.784473 AGTTCAAGGAAAGGAAGGATTTGAAT 59.216 34.615 0.00 0.00 36.05 2.57
1805 3216 3.822735 TCATGCTCAAGTTCAAGGAAAGG 59.177 43.478 0.00 0.00 0.00 3.11
1806 3217 4.518211 AGTCATGCTCAAGTTCAAGGAAAG 59.482 41.667 0.00 0.00 0.00 2.62
1807 3218 4.276678 CAGTCATGCTCAAGTTCAAGGAAA 59.723 41.667 0.00 0.00 0.00 3.13
1809 3220 3.181451 ACAGTCATGCTCAAGTTCAAGGA 60.181 43.478 0.00 0.00 0.00 3.36
1810 3221 3.144506 ACAGTCATGCTCAAGTTCAAGG 58.855 45.455 0.00 0.00 0.00 3.61
1811 3222 5.929697 TTACAGTCATGCTCAAGTTCAAG 57.070 39.130 0.00 0.00 0.00 3.02
1812 3223 6.882610 ATTTACAGTCATGCTCAAGTTCAA 57.117 33.333 0.00 0.00 0.00 2.69
1813 3224 6.486320 TGAATTTACAGTCATGCTCAAGTTCA 59.514 34.615 10.90 10.90 29.95 3.18
1814 3225 6.798959 GTGAATTTACAGTCATGCTCAAGTTC 59.201 38.462 0.00 0.12 27.71 3.01
1816 3227 5.182001 GGTGAATTTACAGTCATGCTCAAGT 59.818 40.000 2.50 0.00 27.71 3.16
1817 3228 5.392380 GGGTGAATTTACAGTCATGCTCAAG 60.392 44.000 2.50 0.00 27.71 3.02
1818 3229 4.458989 GGGTGAATTTACAGTCATGCTCAA 59.541 41.667 2.50 0.00 27.71 3.02
1819 3230 4.009675 GGGTGAATTTACAGTCATGCTCA 58.990 43.478 2.50 0.00 27.71 4.26
1820 3231 4.265073 AGGGTGAATTTACAGTCATGCTC 58.735 43.478 2.50 0.00 27.71 4.26
1821 3232 4.307032 AGGGTGAATTTACAGTCATGCT 57.693 40.909 2.50 0.00 27.71 3.79
1822 3233 5.391312 AAAGGGTGAATTTACAGTCATGC 57.609 39.130 2.50 0.00 27.71 4.06
1823 3234 6.748132 ACAAAAGGGTGAATTTACAGTCATG 58.252 36.000 2.50 0.00 27.71 3.07
1824 3235 6.976934 ACAAAAGGGTGAATTTACAGTCAT 57.023 33.333 2.50 0.00 27.71 3.06
1825 3236 6.406400 CCAACAAAAGGGTGAATTTACAGTCA 60.406 38.462 2.50 0.00 0.00 3.41
1826 3237 5.983118 CCAACAAAAGGGTGAATTTACAGTC 59.017 40.000 2.50 0.00 0.00 3.51
1827 3238 5.423931 ACCAACAAAAGGGTGAATTTACAGT 59.576 36.000 2.50 0.00 35.67 3.55
1828 3239 5.912892 ACCAACAAAAGGGTGAATTTACAG 58.087 37.500 2.50 0.00 35.67 2.74
1829 3240 5.941555 ACCAACAAAAGGGTGAATTTACA 57.058 34.783 2.50 0.00 35.67 2.41
1837 3248 1.138069 GGTCCAACCAACAAAAGGGTG 59.862 52.381 0.00 0.00 43.61 4.61
1838 3249 1.491668 GGTCCAACCAACAAAAGGGT 58.508 50.000 0.00 0.00 38.42 4.34
1849 3260 4.563140 TTCTGTAGGTATTGGTCCAACC 57.437 45.455 6.41 5.44 39.22 3.77
1864 3275 7.382898 TGTACAGTACATCAGCAAATTCTGTA 58.617 34.615 9.51 0.00 36.52 2.74
1963 3374 4.271696 ACTTGATCACATTGACGAGGAA 57.728 40.909 0.00 0.00 0.00 3.36
1968 3379 7.294676 TGATTAGAACTTGATCACATTGACG 57.705 36.000 0.00 0.00 0.00 4.35
2006 3417 6.545666 TCCAGACTCTAAAGCAAATGAAACAA 59.454 34.615 0.00 0.00 0.00 2.83
2161 3575 3.451178 AGATGTACAAGAGGCCACGTTAT 59.549 43.478 5.01 0.00 0.00 1.89
2537 3965 7.606349 AGCATTTAACCCTTCTGAAGATTTTC 58.394 34.615 18.68 0.00 0.00 2.29
2540 3968 7.669722 TGTAAGCATTTAACCCTTCTGAAGATT 59.330 33.333 18.68 13.86 0.00 2.40
2619 4047 1.895798 CTCCACTGCTTGTCCTAGACA 59.104 52.381 0.00 0.00 41.09 3.41
2641 4069 2.290577 ACTTTCAGAAGGACCAGATGCC 60.291 50.000 0.00 0.00 37.19 4.40
2677 4105 2.811317 CGTCGCCTCTTGGTGCTC 60.811 66.667 0.00 0.00 43.26 4.26
2785 4213 3.684788 CAGCTACTGCCGTTATTTTCACT 59.315 43.478 0.00 0.00 40.80 3.41
2874 4302 8.171337 AGTTCCCCAGATAGGTTAAAAATAGT 57.829 34.615 0.00 0.00 34.66 2.12
3205 4633 9.798994 GTCTCTACAAGGATACGATAAAAGAAA 57.201 33.333 0.00 0.00 46.39 2.52
3213 4641 5.764192 GGTACTGTCTCTACAAGGATACGAT 59.236 44.000 0.00 0.00 46.39 3.73
3254 4682 4.255510 AGTTATTGACCCATGCCATCTT 57.744 40.909 0.00 0.00 0.00 2.40
3264 4692 5.766174 TGTGTCCAACTTTAGTTATTGACCC 59.234 40.000 12.58 6.02 36.32 4.46
3265 4693 6.870971 TGTGTCCAACTTTAGTTATTGACC 57.129 37.500 12.58 7.75 36.32 4.02
3332 4760 0.907704 AATGTCTACTGTCCCCCGCA 60.908 55.000 0.00 0.00 0.00 5.69
3333 4761 0.252197 AAATGTCTACTGTCCCCCGC 59.748 55.000 0.00 0.00 0.00 6.13
3334 4762 1.134491 GGAAATGTCTACTGTCCCCCG 60.134 57.143 0.00 0.00 0.00 5.73
3348 4776 4.277423 ACTTAAACTGACCCGTTGGAAATG 59.723 41.667 0.00 0.00 34.81 2.32
3358 4786 1.335597 GCGCCAAACTTAAACTGACCC 60.336 52.381 0.00 0.00 0.00 4.46
3406 4836 5.163794 GCAGCAATTGGATTTTCATTCTTGG 60.164 40.000 7.72 0.00 0.00 3.61
3440 4870 1.171308 CCATCACTTTGCTCCAGTGG 58.829 55.000 1.40 1.40 41.83 4.00
3442 4872 1.901591 CACCATCACTTTGCTCCAGT 58.098 50.000 0.00 0.00 0.00 4.00
3446 4876 2.813754 TGTAAGCACCATCACTTTGCTC 59.186 45.455 0.00 0.00 45.93 4.26
3477 4907 2.833631 AGCAGTACCACACAGTAACC 57.166 50.000 0.00 0.00 0.00 2.85
3478 4908 4.922103 GTCTAAGCAGTACCACACAGTAAC 59.078 45.833 0.00 0.00 0.00 2.50
3479 4909 4.021719 GGTCTAAGCAGTACCACACAGTAA 60.022 45.833 0.00 0.00 33.28 2.24
3480 4910 3.508793 GGTCTAAGCAGTACCACACAGTA 59.491 47.826 0.00 0.00 33.28 2.74
3481 4911 2.299297 GGTCTAAGCAGTACCACACAGT 59.701 50.000 0.00 0.00 33.28 3.55
3482 4912 2.353803 GGGTCTAAGCAGTACCACACAG 60.354 54.545 0.00 0.00 34.83 3.66
3483 4913 1.621814 GGGTCTAAGCAGTACCACACA 59.378 52.381 0.00 0.00 34.83 3.72
3484 4914 1.900486 AGGGTCTAAGCAGTACCACAC 59.100 52.381 0.00 0.00 34.83 3.82
3485 4915 2.320681 AGGGTCTAAGCAGTACCACA 57.679 50.000 0.00 0.00 34.83 4.17
3486 4916 4.499357 CGAATAGGGTCTAAGCAGTACCAC 60.499 50.000 0.00 0.00 34.83 4.16
3583 5016 6.716934 TCTCTCCTACAAGTAAGCTAATGG 57.283 41.667 0.00 0.00 0.00 3.16
3603 5036 8.261522 GGTTGGAAATACCTAGATGGATATCTC 58.738 40.741 2.05 0.00 38.14 2.75
3604 5037 7.739444 TGGTTGGAAATACCTAGATGGATATCT 59.261 37.037 2.05 0.00 40.57 1.98
3605 5038 7.918076 TGGTTGGAAATACCTAGATGGATATC 58.082 38.462 0.00 0.00 39.71 1.63
3652 5085 5.416639 TCTCATGATTGTGAATTTGTCCAGG 59.583 40.000 0.00 0.00 0.00 4.45
3704 5137 0.926293 TCAATGGAGGAATGTCCCCC 59.074 55.000 0.00 0.00 37.19 5.40
3709 5142 2.225091 TGTGGCTTCAATGGAGGAATGT 60.225 45.455 0.00 0.00 0.00 2.71
3724 5157 4.039004 TGAACAATTGCTAATGTTGTGGCT 59.961 37.500 6.32 0.00 39.73 4.75
3725 5158 4.305769 TGAACAATTGCTAATGTTGTGGC 58.694 39.130 6.32 0.00 39.73 5.01
3737 5170 8.012241 CAGTACTCTTAAGAACTGAACAATTGC 58.988 37.037 24.12 0.00 41.47 3.56
3748 5181 5.995897 TGAAAAGGGCAGTACTCTTAAGAAC 59.004 40.000 6.63 2.90 0.00 3.01
3761 5194 6.974622 GTGATATGTACAATTGAAAAGGGCAG 59.025 38.462 13.59 0.00 0.00 4.85
3762 5195 6.404184 CGTGATATGTACAATTGAAAAGGGCA 60.404 38.462 13.59 0.03 0.00 5.36
3763 5196 5.971202 CGTGATATGTACAATTGAAAAGGGC 59.029 40.000 13.59 0.00 0.00 5.19
3764 5197 6.317642 TCCGTGATATGTACAATTGAAAAGGG 59.682 38.462 13.59 4.21 0.00 3.95
3772 5205 6.054941 TCAGCAATCCGTGATATGTACAATT 58.945 36.000 0.00 0.00 0.00 2.32
3786 5219 1.821332 GGCCCTCTTCAGCAATCCG 60.821 63.158 0.00 0.00 0.00 4.18
3795 5228 0.251634 CAAGACCTCAGGCCCTCTTC 59.748 60.000 0.00 0.00 0.00 2.87
3800 5233 2.610859 TCCCAAGACCTCAGGCCC 60.611 66.667 0.00 0.00 0.00 5.80
3802 5235 0.322008 CAACTCCCAAGACCTCAGGC 60.322 60.000 0.00 0.00 0.00 4.85
3813 5246 0.038166 GGTCAAGCCATCAACTCCCA 59.962 55.000 0.00 0.00 37.17 4.37
3827 5260 1.075374 CCTCCCCAGAAACATGGTCAA 59.925 52.381 0.00 0.00 38.81 3.18
3847 5280 3.251972 GGGACTAGCTGCTAATCAAATGC 59.748 47.826 18.50 2.25 0.00 3.56
3879 5312 1.303643 GCCAGGACCAACCCAGAAG 60.304 63.158 0.00 0.00 40.05 2.85
3889 5322 4.048470 GGGGACAAGGCCAGGACC 62.048 72.222 5.01 6.03 0.00 4.46
3927 5360 2.171341 AAAGAAAGAGGGACGACTGC 57.829 50.000 0.00 0.00 0.00 4.40
3976 5409 4.499188 GGGGCTGTGTTTTTCTGAAGTAAC 60.499 45.833 9.29 9.29 0.00 2.50
4218 5654 7.437748 GTGAGTTCTGGCATACTAAGACATAT 58.562 38.462 2.78 0.00 0.00 1.78
4229 5665 2.575735 TCCATTGGTGAGTTCTGGCATA 59.424 45.455 1.86 0.00 0.00 3.14
4232 5668 2.019984 GATCCATTGGTGAGTTCTGGC 58.980 52.381 1.86 0.00 0.00 4.85
4262 5698 1.299541 AACAAGTCTTGTGAGTGGCG 58.700 50.000 18.84 0.00 44.59 5.69
4296 5743 8.250332 TGAGGAATACAATTGCAAGATAAAACC 58.750 33.333 4.94 4.19 0.00 3.27
4303 5751 6.003326 TGTCTTGAGGAATACAATTGCAAGA 58.997 36.000 14.54 14.54 38.23 3.02
4308 5756 5.885230 TGCTGTCTTGAGGAATACAATTG 57.115 39.130 3.24 3.24 0.00 2.32
4315 5763 5.826737 CCATAGATTTGCTGTCTTGAGGAAT 59.173 40.000 0.00 0.00 0.00 3.01
4321 5769 3.181493 GCCACCATAGATTTGCTGTCTTG 60.181 47.826 0.00 0.00 0.00 3.02
4338 5786 9.143631 GCATAAAATTATATCAGAATTGCCACC 57.856 33.333 0.00 0.00 0.00 4.61
4477 5925 9.262358 GTCAGGTCAAAACATATAGACTAATCC 57.738 37.037 0.00 0.00 0.00 3.01
4536 5986 6.215845 CCTTGTCCACACTGAAAAATAAAGG 58.784 40.000 0.00 0.00 0.00 3.11
4739 6190 8.712228 ATAAGAGTGGAAAAAGGAATCAAAGT 57.288 30.769 0.00 0.00 0.00 2.66
4779 6279 9.690913 TTTATCAGAACCAATCTTGAATCAGAT 57.309 29.630 0.00 1.20 35.73 2.90
4789 6289 5.879223 CAGACAGCTTTATCAGAACCAATCT 59.121 40.000 0.00 0.00 39.68 2.40
4794 6294 4.997395 TGAACAGACAGCTTTATCAGAACC 59.003 41.667 0.00 0.00 0.00 3.62
4803 6303 3.118408 TGGTGTAGTGAACAGACAGCTTT 60.118 43.478 14.70 0.00 41.14 3.51
4912 6412 0.667792 GACGAGCTCCACAAGACACC 60.668 60.000 8.47 0.00 0.00 4.16
4953 6453 7.765819 TGTCACTTCCATGTCTCAACAATATAG 59.234 37.037 0.00 0.00 39.30 1.31
4955 6879 6.475504 TGTCACTTCCATGTCTCAACAATAT 58.524 36.000 0.00 0.00 39.30 1.28
4966 6890 2.224606 CAGCAACTGTCACTTCCATGT 58.775 47.619 0.00 0.00 0.00 3.21
4967 6891 2.224606 ACAGCAACTGTCACTTCCATG 58.775 47.619 0.00 0.00 41.21 3.66
4973 6897 5.822519 TCAAAGAAATACAGCAACTGTCACT 59.177 36.000 3.01 0.00 41.21 3.41
4976 6900 7.588512 AGAATCAAAGAAATACAGCAACTGTC 58.411 34.615 3.01 0.00 41.21 3.51
4980 6904 9.118236 GTGTTAGAATCAAAGAAATACAGCAAC 57.882 33.333 0.00 0.00 0.00 4.17
4982 6906 8.621532 AGTGTTAGAATCAAAGAAATACAGCA 57.378 30.769 0.00 0.00 0.00 4.41
4993 6917 9.887406 GGAAATTTCGTAAGTGTTAGAATCAAA 57.113 29.630 11.95 0.00 39.48 2.69
4994 6918 9.280174 AGGAAATTTCGTAAGTGTTAGAATCAA 57.720 29.630 11.54 0.00 39.48 2.57
4995 6919 8.842358 AGGAAATTTCGTAAGTGTTAGAATCA 57.158 30.769 11.54 0.00 39.48 2.57
4997 6921 9.715121 TGTAGGAAATTTCGTAAGTGTTAGAAT 57.285 29.630 19.28 0.00 39.48 2.40
4998 6922 9.199982 CTGTAGGAAATTTCGTAAGTGTTAGAA 57.800 33.333 19.28 0.00 39.48 2.10
4999 6923 8.579006 TCTGTAGGAAATTTCGTAAGTGTTAGA 58.421 33.333 19.28 13.43 39.48 2.10
5000 6924 8.752766 TCTGTAGGAAATTTCGTAAGTGTTAG 57.247 34.615 19.28 11.90 39.48 2.34
5001 6925 9.146984 CATCTGTAGGAAATTTCGTAAGTGTTA 57.853 33.333 19.28 5.90 39.48 2.41
5002 6926 7.876068 TCATCTGTAGGAAATTTCGTAAGTGTT 59.124 33.333 19.28 7.56 39.48 3.32
5003 6927 7.383687 TCATCTGTAGGAAATTTCGTAAGTGT 58.616 34.615 19.28 6.71 39.48 3.55
5004 6928 7.827819 TCATCTGTAGGAAATTTCGTAAGTG 57.172 36.000 19.28 15.10 39.48 3.16
5005 6929 7.549488 CCTTCATCTGTAGGAAATTTCGTAAGT 59.451 37.037 19.28 6.13 34.90 2.24
5006 6930 7.466050 GCCTTCATCTGTAGGAAATTTCGTAAG 60.466 40.741 19.28 17.31 34.90 2.34
5007 6931 6.315393 GCCTTCATCTGTAGGAAATTTCGTAA 59.685 38.462 19.28 7.50 34.90 3.18
5008 6932 5.815740 GCCTTCATCTGTAGGAAATTTCGTA 59.184 40.000 14.92 14.92 34.90 3.43
5009 6933 4.636206 GCCTTCATCTGTAGGAAATTTCGT 59.364 41.667 16.84 16.84 34.90 3.85
5010 6934 4.260375 CGCCTTCATCTGTAGGAAATTTCG 60.260 45.833 11.95 0.00 34.90 3.46
5021 6945 2.564947 AGAAGACTTCGCCTTCATCTGT 59.435 45.455 9.53 0.00 41.73 3.41
5029 6953 1.294780 CCAGCAGAAGACTTCGCCT 59.705 57.895 20.77 13.70 32.34 5.52
5230 7155 0.317160 CGTTCAGCAGGTGGTACTCA 59.683 55.000 0.00 0.00 0.00 3.41
5241 7166 3.326981 CGCACGACACGTTCAGCA 61.327 61.111 0.00 0.00 38.32 4.41
5445 7374 6.668645 ACCAGTGCACAGGGAATAATTAATA 58.331 36.000 29.40 0.00 0.00 0.98
5449 7378 3.456380 ACCAGTGCACAGGGAATAATT 57.544 42.857 29.40 6.37 0.00 1.40
5450 7379 3.265737 TGTACCAGTGCACAGGGAATAAT 59.734 43.478 29.40 11.97 0.00 1.28
5452 7381 2.236146 CTGTACCAGTGCACAGGGAATA 59.764 50.000 29.40 14.51 38.79 1.75
5453 7382 1.003580 CTGTACCAGTGCACAGGGAAT 59.996 52.381 29.40 13.37 38.79 3.01
5454 7383 0.396435 CTGTACCAGTGCACAGGGAA 59.604 55.000 29.40 16.01 38.79 3.97
5456 7385 0.036952 CTCTGTACCAGTGCACAGGG 60.037 60.000 29.40 25.50 42.01 4.45
5457 7386 0.681733 ACTCTGTACCAGTGCACAGG 59.318 55.000 25.37 25.37 42.01 4.00
5459 7388 3.986970 CACTCTGTACCAGTGCACA 57.013 52.632 21.04 0.00 35.15 4.57
5464 7393 0.979665 ATGCTGCACTCTGTACCAGT 59.020 50.000 3.57 0.00 32.61 4.00
5465 7394 1.736126 CAATGCTGCACTCTGTACCAG 59.264 52.381 3.57 0.00 0.00 4.00
5466 7395 1.611410 CCAATGCTGCACTCTGTACCA 60.611 52.381 3.57 0.00 0.00 3.25
5519 7448 3.100671 AGCAAATCCTCCTAACTCGACT 58.899 45.455 0.00 0.00 0.00 4.18
5719 7650 1.302832 GTGGGCCACTCAAGTCAGG 60.303 63.158 29.22 0.00 0.00 3.86
5888 7831 0.461135 GAAGCAGAGGAGAGCAGAGG 59.539 60.000 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.