Multiple sequence alignment - TraesCS3D01G356400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G356400 chr3D 100.000 7209 0 0 1 7209 468774639 468767431 0.000000e+00 13313.0
1 TraesCS3D01G356400 chr3B 95.238 3990 119 25 829 4772 622478987 622475023 0.000000e+00 6250.0
2 TraesCS3D01G356400 chr3B 93.475 2452 88 36 4802 7209 622475024 622472601 0.000000e+00 3576.0
3 TraesCS3D01G356400 chr3B 94.751 381 19 1 328 708 622481409 622481030 6.230000e-165 592.0
4 TraesCS3D01G356400 chr3B 95.378 238 11 0 93 330 389041897 389042134 5.280000e-101 379.0
5 TraesCS3D01G356400 chr3B 96.552 87 2 1 743 828 622480799 622480713 7.540000e-30 143.0
6 TraesCS3D01G356400 chr3B 93.846 65 4 0 33 97 622481469 622481405 1.660000e-16 99.0
7 TraesCS3D01G356400 chr3B 100.000 34 0 0 711 744 622480994 622480961 6.040000e-06 63.9
8 TraesCS3D01G356400 chr3A 94.854 2254 81 10 2763 4996 610555005 610552767 0.000000e+00 3487.0
9 TraesCS3D01G356400 chr3A 93.333 2130 88 30 698 2775 610557192 610555065 0.000000e+00 3097.0
10 TraesCS3D01G356400 chr3A 93.891 1506 34 11 5021 6493 610552772 610551292 0.000000e+00 2218.0
11 TraesCS3D01G356400 chr3A 92.994 314 20 2 6503 6815 610551318 610551006 2.370000e-124 457.0
12 TraesCS3D01G356400 chr3A 96.996 233 6 1 97 329 308789509 308789740 2.440000e-104 390.0
13 TraesCS3D01G356400 chr3A 90.830 229 17 3 6874 7101 610550976 610550751 3.270000e-78 303.0
14 TraesCS3D01G356400 chr3A 94.118 119 5 2 7091 7209 610550732 610550616 5.750000e-41 180.0
15 TraesCS3D01G356400 chr3A 88.000 75 9 0 2849 2923 699997971 699998045 9.960000e-14 89.8
16 TraesCS3D01G356400 chr6D 90.214 1124 89 7 2382 3495 224668959 224667847 0.000000e+00 1447.0
17 TraesCS3D01G356400 chr6B 88.754 658 64 6 2859 3508 343374382 343375037 0.000000e+00 797.0
18 TraesCS3D01G356400 chr6B 86.010 629 64 11 1530 2155 343112983 343113590 0.000000e+00 652.0
19 TraesCS3D01G356400 chr6B 86.719 256 31 2 994 1247 343112730 343112984 1.530000e-71 281.0
20 TraesCS3D01G356400 chr6B 84.507 142 19 3 1964 2104 88453632 88453493 3.510000e-28 137.0
21 TraesCS3D01G356400 chr4A 83.876 614 66 14 1972 2584 605127791 605128372 8.170000e-154 555.0
22 TraesCS3D01G356400 chr4A 81.900 221 26 13 2888 3101 605128593 605128806 2.670000e-39 174.0
23 TraesCS3D01G356400 chr4A 83.099 142 21 3 1965 2104 377610487 377610347 7.590000e-25 126.0
24 TraesCS3D01G356400 chr1A 83.388 614 69 14 1972 2584 261372601 261372020 8.230000e-149 538.0
25 TraesCS3D01G356400 chr1A 82.781 302 31 11 3649 3937 474179400 474179693 4.320000e-62 250.0
26 TraesCS3D01G356400 chr1A 89.116 147 12 2 1972 2118 474173955 474174097 5.750000e-41 180.0
27 TraesCS3D01G356400 chr1A 81.900 221 26 13 2888 3101 261371799 261371586 2.670000e-39 174.0
28 TraesCS3D01G356400 chr1A 80.995 221 28 13 2888 3101 474179159 474179372 5.790000e-36 163.0
29 TraesCS3D01G356400 chr7D 99.142 233 2 0 97 329 440202777 440202545 3.110000e-113 420.0
30 TraesCS3D01G356400 chr7D 90.948 232 20 1 99 330 428895717 428895487 1.950000e-80 311.0
31 TraesCS3D01G356400 chr7B 97.458 236 5 1 93 328 403488206 403487972 1.130000e-107 401.0
32 TraesCS3D01G356400 chr5B 96.567 233 8 0 97 329 469823614 469823382 3.150000e-103 387.0
33 TraesCS3D01G356400 chr5B 95.359 237 11 0 94 330 328549185 328549421 1.900000e-100 377.0
34 TraesCS3D01G356400 chr5B 84.615 143 17 5 1965 2104 211736280 211736140 3.510000e-28 137.0
35 TraesCS3D01G356400 chr2B 95.359 237 11 0 94 330 450340950 450341186 1.900000e-100 377.0
36 TraesCS3D01G356400 chr6A 95.690 232 10 0 97 328 485382940 485383171 2.460000e-99 374.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G356400 chr3D 468767431 468774639 7208 True 13313.000000 13313 100.000000 1 7209 1 chr3D.!!$R1 7208
1 TraesCS3D01G356400 chr3B 622472601 622481469 8868 True 1787.316667 6250 95.643667 33 7209 6 chr3B.!!$R1 7176
2 TraesCS3D01G356400 chr3A 610550616 610557192 6576 True 1623.666667 3487 93.336667 698 7209 6 chr3A.!!$R1 6511
3 TraesCS3D01G356400 chr6D 224667847 224668959 1112 True 1447.000000 1447 90.214000 2382 3495 1 chr6D.!!$R1 1113
4 TraesCS3D01G356400 chr6B 343374382 343375037 655 False 797.000000 797 88.754000 2859 3508 1 chr6B.!!$F1 649
5 TraesCS3D01G356400 chr6B 343112730 343113590 860 False 466.500000 652 86.364500 994 2155 2 chr6B.!!$F2 1161
6 TraesCS3D01G356400 chr4A 605127791 605128806 1015 False 364.500000 555 82.888000 1972 3101 2 chr4A.!!$F1 1129
7 TraesCS3D01G356400 chr1A 261371586 261372601 1015 True 356.000000 538 82.644000 1972 3101 2 chr1A.!!$R1 1129
8 TraesCS3D01G356400 chr1A 474179159 474179693 534 False 206.500000 250 81.888000 2888 3937 2 chr1A.!!$F2 1049

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 114 0.039618 ACGGGGCTGTTTGGATCATT 59.960 50.000 0.00 0.00 0.00 2.57 F
115 116 0.176449 GGGGCTGTTTGGATCATTGC 59.824 55.000 0.00 0.00 0.00 3.56 F
116 117 0.176449 GGGCTGTTTGGATCATTGCC 59.824 55.000 0.00 0.00 38.28 4.52 F
118 119 0.176449 GCTGTTTGGATCATTGCCCC 59.824 55.000 0.00 0.00 0.00 5.80 F
274 275 0.251341 GCCGATTCCTGGGCCAATAT 60.251 55.000 8.04 0.42 43.64 1.28 F
323 324 0.318107 CGCTGGCTCAAACCAAACAG 60.318 55.000 0.00 0.00 39.86 3.16 F
686 687 0.328258 ACTTTGGGGCGCTTATCAGT 59.672 50.000 7.64 1.46 0.00 3.41 F
940 2885 0.561184 TGTACGATCCCATCCCCTCT 59.439 55.000 0.00 0.00 0.00 3.69 F
2650 4663 1.148310 TACAGTTTGCTCTTGAGCGC 58.852 50.000 16.48 0.00 37.69 5.92 F
3009 5129 1.557832 AGGCGTGGAAAGGTATTGCTA 59.442 47.619 0.00 0.00 0.00 3.49 F
3784 5932 0.984230 GATGGAGGACCTCACAACCA 59.016 55.000 23.06 12.34 37.04 3.67 F
4692 6845 1.001293 CAAAGCCCTTTCTTTCCTGGC 59.999 52.381 0.00 0.00 42.48 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1275 3237 0.394565 GCGAGGCATTGGGAGTAGAT 59.605 55.000 0.00 0.0 0.00 1.98 R
1326 3315 2.430367 GGAGTTGGCGTTGGAGGT 59.570 61.111 0.00 0.0 0.00 3.85 R
1429 3430 2.677003 CGGCGCCGATGTCAAAGTT 61.677 57.895 44.86 0.0 42.83 2.66 R
1788 3791 3.866883 ATTCCATTGCAGTAAAACCGG 57.133 42.857 0.00 0.0 0.00 5.28 R
1889 3892 4.035675 AGCTAAAACTTTGAGTGCTGTGAC 59.964 41.667 0.00 0.0 0.00 3.67 R
2243 4256 5.364446 AGTTACCTTTCCCGTTTCCAAAAAT 59.636 36.000 0.00 0.0 0.00 1.82 R
2650 4663 1.580942 CACCATTGCAGGAACACCG 59.419 57.895 0.00 0.0 0.00 4.94 R
2812 4897 2.550830 AAGTAGGTGTTGCTCAGGTG 57.449 50.000 0.00 0.0 0.00 4.00 R
3784 5932 2.092429 TCACAAGCTCCCAACAAAGTCT 60.092 45.455 0.00 0.0 0.00 3.24 R
4881 7043 0.531974 GTTGTGACAGCCGAGGTCAA 60.532 55.000 5.54 0.0 45.96 3.18 R
5444 7636 1.003118 TGGAAACTACGCCATGAGCTT 59.997 47.619 0.00 0.0 40.39 3.74 R
6536 8762 0.523072 CTTTTCATCACAGCCCGGTG 59.477 55.000 0.00 0.0 40.16 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.681064 ACCATGCCCGCAAATGCT 60.681 55.556 3.63 0.00 39.32 3.79
18 19 2.202824 CCATGCCCGCAAATGCTG 60.203 61.111 3.63 0.00 39.32 4.41
19 20 2.202824 CATGCCCGCAAATGCTGG 60.203 61.111 11.07 11.07 46.49 4.85
20 21 2.362760 ATGCCCGCAAATGCTGGA 60.363 55.556 18.52 4.47 46.66 3.86
21 22 1.983481 ATGCCCGCAAATGCTGGAA 60.983 52.632 18.52 9.43 46.66 3.53
22 23 1.952102 ATGCCCGCAAATGCTGGAAG 61.952 55.000 18.52 4.65 46.66 3.46
63 64 2.260869 AAGCGGCGAGTGTTTGCAT 61.261 52.632 12.98 0.00 35.24 3.96
76 77 1.535028 GTTTGCATGTGTCGATGGTCA 59.465 47.619 0.00 0.00 0.00 4.02
82 83 4.451150 TGTCGATGGTCAGCGGCC 62.451 66.667 10.63 0.00 45.01 6.13
97 98 2.813908 GCCACGGAGTTGCTACGG 60.814 66.667 5.72 0.00 46.33 4.02
98 99 2.125673 CCACGGAGTTGCTACGGG 60.126 66.667 5.72 0.52 42.90 5.28
99 100 2.125673 CACGGAGTTGCTACGGGG 60.126 66.667 5.72 0.00 42.90 5.73
100 101 4.078516 ACGGAGTTGCTACGGGGC 62.079 66.667 5.72 0.00 42.90 5.80
101 102 3.771160 CGGAGTTGCTACGGGGCT 61.771 66.667 3.75 0.00 33.64 5.19
102 103 2.125106 GGAGTTGCTACGGGGCTG 60.125 66.667 3.75 0.00 0.00 4.85
103 104 2.663196 GAGTTGCTACGGGGCTGT 59.337 61.111 3.75 0.00 0.00 4.40
104 105 1.003718 GAGTTGCTACGGGGCTGTT 60.004 57.895 3.75 0.00 0.00 3.16
105 106 0.605589 GAGTTGCTACGGGGCTGTTT 60.606 55.000 3.75 0.00 0.00 2.83
106 107 0.889186 AGTTGCTACGGGGCTGTTTG 60.889 55.000 3.75 0.00 0.00 2.93
107 108 1.602323 TTGCTACGGGGCTGTTTGG 60.602 57.895 3.75 0.00 0.00 3.28
108 109 2.058125 TTGCTACGGGGCTGTTTGGA 62.058 55.000 3.75 0.00 0.00 3.53
109 110 1.077716 GCTACGGGGCTGTTTGGAT 60.078 57.895 0.00 0.00 0.00 3.41
110 111 1.095807 GCTACGGGGCTGTTTGGATC 61.096 60.000 0.00 0.00 0.00 3.36
111 112 0.251916 CTACGGGGCTGTTTGGATCA 59.748 55.000 0.00 0.00 0.00 2.92
112 113 0.916086 TACGGGGCTGTTTGGATCAT 59.084 50.000 0.00 0.00 0.00 2.45
113 114 0.039618 ACGGGGCTGTTTGGATCATT 59.960 50.000 0.00 0.00 0.00 2.57
114 115 0.457035 CGGGGCTGTTTGGATCATTG 59.543 55.000 0.00 0.00 0.00 2.82
115 116 0.176449 GGGGCTGTTTGGATCATTGC 59.824 55.000 0.00 0.00 0.00 3.56
116 117 0.176449 GGGCTGTTTGGATCATTGCC 59.824 55.000 0.00 0.00 38.28 4.52
117 118 0.176449 GGCTGTTTGGATCATTGCCC 59.824 55.000 0.00 0.00 33.45 5.36
118 119 0.176449 GCTGTTTGGATCATTGCCCC 59.824 55.000 0.00 0.00 0.00 5.80
119 120 1.559368 CTGTTTGGATCATTGCCCCA 58.441 50.000 0.00 0.00 0.00 4.96
120 121 1.901159 CTGTTTGGATCATTGCCCCAA 59.099 47.619 0.00 5.75 38.10 4.12
121 122 1.901159 TGTTTGGATCATTGCCCCAAG 59.099 47.619 0.00 0.00 40.59 3.61
122 123 1.207811 GTTTGGATCATTGCCCCAAGG 59.792 52.381 0.00 0.00 40.59 3.61
133 134 4.424711 CCCAAGGCGCCCTGCTAA 62.425 66.667 26.15 0.00 45.43 3.09
134 135 2.361104 CCAAGGCGCCCTGCTAAA 60.361 61.111 26.15 0.00 45.43 1.85
135 136 1.976474 CCAAGGCGCCCTGCTAAAA 60.976 57.895 26.15 0.00 45.43 1.52
136 137 1.322538 CCAAGGCGCCCTGCTAAAAT 61.323 55.000 26.15 0.00 45.43 1.82
137 138 1.388547 CAAGGCGCCCTGCTAAAATA 58.611 50.000 26.15 0.00 45.43 1.40
138 139 1.956477 CAAGGCGCCCTGCTAAAATAT 59.044 47.619 26.15 0.00 45.43 1.28
139 140 2.362077 CAAGGCGCCCTGCTAAAATATT 59.638 45.455 26.15 2.48 45.43 1.28
140 141 1.956477 AGGCGCCCTGCTAAAATATTG 59.044 47.619 26.15 0.00 45.43 1.90
141 142 1.000274 GGCGCCCTGCTAAAATATTGG 60.000 52.381 18.11 0.00 45.43 3.16
142 143 1.681264 GCGCCCTGCTAAAATATTGGT 59.319 47.619 0.00 0.00 41.73 3.67
143 144 2.882137 GCGCCCTGCTAAAATATTGGTA 59.118 45.455 0.00 0.00 41.73 3.25
144 145 3.058224 GCGCCCTGCTAAAATATTGGTAG 60.058 47.826 0.00 0.00 41.73 3.18
145 146 3.058224 CGCCCTGCTAAAATATTGGTAGC 60.058 47.826 18.29 18.29 40.56 3.58
146 147 4.145052 GCCCTGCTAAAATATTGGTAGCT 58.855 43.478 22.52 0.00 40.73 3.32
147 148 4.022849 GCCCTGCTAAAATATTGGTAGCTG 60.023 45.833 22.52 21.42 40.73 4.24
148 149 5.376625 CCCTGCTAAAATATTGGTAGCTGA 58.623 41.667 24.83 12.02 40.35 4.26
149 150 5.239525 CCCTGCTAAAATATTGGTAGCTGAC 59.760 44.000 24.83 0.00 40.35 3.51
169 170 2.579873 CCAGCTCTGGGTATCCATTTG 58.420 52.381 8.03 0.00 46.81 2.32
170 171 2.579873 CAGCTCTGGGTATCCATTTGG 58.420 52.381 0.00 0.00 43.11 3.28
171 172 2.092212 CAGCTCTGGGTATCCATTTGGT 60.092 50.000 0.00 0.00 43.11 3.67
172 173 2.582636 AGCTCTGGGTATCCATTTGGTT 59.417 45.455 0.00 0.00 43.11 3.67
173 174 2.689983 GCTCTGGGTATCCATTTGGTTG 59.310 50.000 0.00 0.00 43.11 3.77
174 175 2.689983 CTCTGGGTATCCATTTGGTTGC 59.310 50.000 0.00 0.00 43.11 4.17
175 176 2.042297 TCTGGGTATCCATTTGGTTGCA 59.958 45.455 0.00 0.00 43.11 4.08
176 177 2.830923 CTGGGTATCCATTTGGTTGCAA 59.169 45.455 0.00 0.00 43.11 4.08
177 178 2.830923 TGGGTATCCATTTGGTTGCAAG 59.169 45.455 0.00 0.00 38.32 4.01
178 179 2.418609 GGGTATCCATTTGGTTGCAAGC 60.419 50.000 21.51 21.51 36.34 4.01
179 180 2.418609 GGTATCCATTTGGTTGCAAGCC 60.419 50.000 24.81 16.87 36.34 4.35
180 181 1.350071 ATCCATTTGGTTGCAAGCCA 58.650 45.000 24.81 19.11 36.34 4.75
181 182 1.126488 TCCATTTGGTTGCAAGCCAA 58.874 45.000 24.81 23.14 43.51 4.52
198 199 1.639280 CAAATAATTGGCACGCCCAC 58.361 50.000 5.42 0.00 45.34 4.61
199 200 1.067283 CAAATAATTGGCACGCCCACA 60.067 47.619 5.42 0.00 45.34 4.17
200 201 0.530288 AATAATTGGCACGCCCACAC 59.470 50.000 5.42 0.00 45.34 3.82
201 202 1.319614 ATAATTGGCACGCCCACACC 61.320 55.000 5.42 0.00 45.34 4.16
202 203 2.419011 TAATTGGCACGCCCACACCT 62.419 55.000 5.42 0.00 45.34 4.00
203 204 4.947147 TTGGCACGCCCACACCTC 62.947 66.667 5.42 0.00 45.34 3.85
207 208 4.248842 CACGCCCACACCTCCACA 62.249 66.667 0.00 0.00 0.00 4.17
208 209 3.484806 ACGCCCACACCTCCACAA 61.485 61.111 0.00 0.00 0.00 3.33
209 210 2.978010 CGCCCACACCTCCACAAC 60.978 66.667 0.00 0.00 0.00 3.32
210 211 2.194597 GCCCACACCTCCACAACA 59.805 61.111 0.00 0.00 0.00 3.33
211 212 1.228552 GCCCACACCTCCACAACAT 60.229 57.895 0.00 0.00 0.00 2.71
212 213 1.244019 GCCCACACCTCCACAACATC 61.244 60.000 0.00 0.00 0.00 3.06
213 214 0.401738 CCCACACCTCCACAACATCT 59.598 55.000 0.00 0.00 0.00 2.90
214 215 1.611673 CCCACACCTCCACAACATCTC 60.612 57.143 0.00 0.00 0.00 2.75
215 216 1.349026 CCACACCTCCACAACATCTCT 59.651 52.381 0.00 0.00 0.00 3.10
216 217 2.567169 CCACACCTCCACAACATCTCTA 59.433 50.000 0.00 0.00 0.00 2.43
217 218 3.368843 CCACACCTCCACAACATCTCTAG 60.369 52.174 0.00 0.00 0.00 2.43
218 219 3.259374 CACACCTCCACAACATCTCTAGT 59.741 47.826 0.00 0.00 0.00 2.57
219 220 3.904339 ACACCTCCACAACATCTCTAGTT 59.096 43.478 0.00 0.00 0.00 2.24
220 221 4.021016 ACACCTCCACAACATCTCTAGTTC 60.021 45.833 0.00 0.00 0.00 3.01
221 222 4.021104 CACCTCCACAACATCTCTAGTTCA 60.021 45.833 0.00 0.00 0.00 3.18
222 223 4.593206 ACCTCCACAACATCTCTAGTTCAA 59.407 41.667 0.00 0.00 0.00 2.69
223 224 5.249393 ACCTCCACAACATCTCTAGTTCAAT 59.751 40.000 0.00 0.00 0.00 2.57
224 225 6.176183 CCTCCACAACATCTCTAGTTCAATT 58.824 40.000 0.00 0.00 0.00 2.32
225 226 6.314896 CCTCCACAACATCTCTAGTTCAATTC 59.685 42.308 0.00 0.00 0.00 2.17
226 227 7.009179 TCCACAACATCTCTAGTTCAATTCT 57.991 36.000 0.00 0.00 0.00 2.40
227 228 7.099764 TCCACAACATCTCTAGTTCAATTCTC 58.900 38.462 0.00 0.00 0.00 2.87
228 229 6.875726 CCACAACATCTCTAGTTCAATTCTCA 59.124 38.462 0.00 0.00 0.00 3.27
229 230 7.064371 CCACAACATCTCTAGTTCAATTCTCAG 59.936 40.741 0.00 0.00 0.00 3.35
230 231 6.593382 ACAACATCTCTAGTTCAATTCTCAGC 59.407 38.462 0.00 0.00 0.00 4.26
231 232 5.669477 ACATCTCTAGTTCAATTCTCAGCC 58.331 41.667 0.00 0.00 0.00 4.85
232 233 5.188555 ACATCTCTAGTTCAATTCTCAGCCA 59.811 40.000 0.00 0.00 0.00 4.75
233 234 5.745312 TCTCTAGTTCAATTCTCAGCCAA 57.255 39.130 0.00 0.00 0.00 4.52
234 235 6.305272 TCTCTAGTTCAATTCTCAGCCAAT 57.695 37.500 0.00 0.00 0.00 3.16
235 236 7.423844 TCTCTAGTTCAATTCTCAGCCAATA 57.576 36.000 0.00 0.00 0.00 1.90
236 237 8.027524 TCTCTAGTTCAATTCTCAGCCAATAT 57.972 34.615 0.00 0.00 0.00 1.28
237 238 8.489489 TCTCTAGTTCAATTCTCAGCCAATATT 58.511 33.333 0.00 0.00 0.00 1.28
238 239 9.118300 CTCTAGTTCAATTCTCAGCCAATATTT 57.882 33.333 0.00 0.00 0.00 1.40
239 240 9.466497 TCTAGTTCAATTCTCAGCCAATATTTT 57.534 29.630 0.00 0.00 0.00 1.82
240 241 9.512435 CTAGTTCAATTCTCAGCCAATATTTTG 57.488 33.333 0.00 0.00 0.00 2.44
251 252 3.207778 CCAATATTTTGGCAAGGCATGG 58.792 45.455 0.00 3.58 45.71 3.66
252 253 3.207778 CAATATTTTGGCAAGGCATGGG 58.792 45.455 0.00 0.00 0.00 4.00
253 254 0.540923 TATTTTGGCAAGGCATGGGC 59.459 50.000 0.00 0.00 40.13 5.36
254 255 2.524951 ATTTTGGCAAGGCATGGGCG 62.525 55.000 0.00 0.00 42.47 6.13
264 265 4.569180 CATGGGCGGCCGATTCCT 62.569 66.667 33.48 13.08 0.00 3.36
265 266 4.569180 ATGGGCGGCCGATTCCTG 62.569 66.667 33.48 0.00 0.00 3.86
272 273 2.123726 GCCGATTCCTGGGCCAAT 60.124 61.111 8.04 0.00 43.64 3.16
273 274 1.150536 GCCGATTCCTGGGCCAATA 59.849 57.895 8.04 0.00 43.64 1.90
274 275 0.251341 GCCGATTCCTGGGCCAATAT 60.251 55.000 8.04 0.42 43.64 1.28
275 276 1.823250 GCCGATTCCTGGGCCAATATT 60.823 52.381 8.04 0.00 43.64 1.28
276 277 2.597455 CCGATTCCTGGGCCAATATTT 58.403 47.619 8.04 0.00 0.00 1.40
277 278 2.965147 CCGATTCCTGGGCCAATATTTT 59.035 45.455 8.04 0.00 0.00 1.82
278 279 3.243839 CCGATTCCTGGGCCAATATTTTG 60.244 47.826 8.04 0.00 0.00 2.44
301 302 3.685435 CCAACGATTGGCAAGGCT 58.315 55.556 5.96 0.00 45.17 4.58
302 303 1.213537 CCAACGATTGGCAAGGCTG 59.786 57.895 5.96 1.93 45.17 4.85
303 304 1.213537 CAACGATTGGCAAGGCTGG 59.786 57.895 5.96 0.00 0.00 4.85
316 317 4.410743 GCTGGCGCTGGCTCAAAC 62.411 66.667 7.64 0.00 39.81 2.93
317 318 3.741476 CTGGCGCTGGCTCAAACC 61.741 66.667 7.64 0.00 39.81 3.27
318 319 4.577677 TGGCGCTGGCTCAAACCA 62.578 61.111 7.64 0.00 39.81 3.67
319 320 3.294493 GGCGCTGGCTCAAACCAA 61.294 61.111 7.64 0.00 39.86 3.67
320 321 2.727544 GCGCTGGCTCAAACCAAA 59.272 55.556 0.00 0.00 39.86 3.28
321 322 1.661509 GCGCTGGCTCAAACCAAAC 60.662 57.895 0.00 0.00 39.86 2.93
322 323 1.732917 CGCTGGCTCAAACCAAACA 59.267 52.632 0.00 0.00 39.86 2.83
323 324 0.318107 CGCTGGCTCAAACCAAACAG 60.318 55.000 0.00 0.00 39.86 3.16
324 325 1.032014 GCTGGCTCAAACCAAACAGA 58.968 50.000 0.00 0.00 39.86 3.41
325 326 1.269257 GCTGGCTCAAACCAAACAGAC 60.269 52.381 0.00 0.00 39.86 3.51
326 327 1.338020 CTGGCTCAAACCAAACAGACC 59.662 52.381 0.00 0.00 39.86 3.85
374 375 4.436998 ACGACGGTGGCTAGCTGC 62.437 66.667 15.72 7.58 41.94 5.25
380 381 1.593750 GGTGGCTAGCTGCGATCTG 60.594 63.158 15.72 0.00 44.05 2.90
433 434 2.511600 GGTCAATGGCCGACGAGG 60.512 66.667 0.00 0.00 44.97 4.63
585 586 1.294659 GGTGCTGCGTGAGGAAGAAG 61.295 60.000 0.00 0.00 0.00 2.85
588 589 1.975327 CTGCGTGAGGAAGAAGGGA 59.025 57.895 0.00 0.00 0.00 4.20
595 596 2.693074 GTGAGGAAGAAGGGAGCTCTAG 59.307 54.545 14.64 0.00 0.00 2.43
686 687 0.328258 ACTTTGGGGCGCTTATCAGT 59.672 50.000 7.64 1.46 0.00 3.41
687 688 1.017387 CTTTGGGGCGCTTATCAGTC 58.983 55.000 7.64 0.00 0.00 3.51
868 2813 9.197694 CATACTCCTCCGAGAAACAATAATAAG 57.802 37.037 0.00 0.00 38.52 1.73
940 2885 0.561184 TGTACGATCCCATCCCCTCT 59.439 55.000 0.00 0.00 0.00 3.69
1191 3153 2.405191 CGCATCTCGTCTCGCTCA 59.595 61.111 0.00 0.00 0.00 4.26
1826 3829 8.338259 CAATGGAATAGTATGTCTTTGTACTGC 58.662 37.037 0.00 0.00 33.48 4.40
1889 3892 6.668323 CACACAGGGTTTATTGTTTCACTAG 58.332 40.000 0.00 0.00 0.00 2.57
1954 3959 3.425577 AGCAACATTTGATGTATGCCG 57.574 42.857 16.85 0.00 44.07 5.69
2342 4355 8.129211 ACAAGTAAAAGCAGAACTTAACACATC 58.871 33.333 0.00 0.00 37.75 3.06
2614 4627 1.909700 TGTCCATTGCTCCCAAAGAC 58.090 50.000 0.00 0.00 38.12 3.01
2650 4663 1.148310 TACAGTTTGCTCTTGAGCGC 58.852 50.000 16.48 0.00 37.69 5.92
2778 4863 3.149196 ACGGTGAGCACTCATTTTGATT 58.851 40.909 3.24 0.00 42.18 2.57
2786 4871 7.113965 GTGAGCACTCATTTTGATTTGTAGTTG 59.886 37.037 3.24 0.00 42.18 3.16
2789 4874 8.796475 AGCACTCATTTTGATTTGTAGTTGTAT 58.204 29.630 0.00 0.00 0.00 2.29
2814 4899 9.754382 ATTTCATTCCTGTTATTGATAATGCAC 57.246 29.630 0.00 0.00 0.00 4.57
2815 4900 7.275888 TCATTCCTGTTATTGATAATGCACC 57.724 36.000 0.00 0.00 0.00 5.01
2816 4901 7.062322 TCATTCCTGTTATTGATAATGCACCT 58.938 34.615 0.00 0.00 0.00 4.00
2817 4902 6.698008 TTCCTGTTATTGATAATGCACCTG 57.302 37.500 0.00 0.00 0.00 4.00
2818 4903 6.000246 TCCTGTTATTGATAATGCACCTGA 58.000 37.500 0.00 0.00 0.00 3.86
2819 4904 6.057533 TCCTGTTATTGATAATGCACCTGAG 58.942 40.000 0.00 0.00 0.00 3.35
2820 4905 5.278169 CCTGTTATTGATAATGCACCTGAGC 60.278 44.000 0.00 0.00 0.00 4.26
2851 4936 8.893727 CCTACTTTATTCCTTCGATTGACAATT 58.106 33.333 1.39 0.00 0.00 2.32
2924 5043 5.688766 GCTCCTGGAGGTTAATAGAATGCTT 60.689 44.000 24.43 0.00 36.34 3.91
3009 5129 1.557832 AGGCGTGGAAAGGTATTGCTA 59.442 47.619 0.00 0.00 0.00 3.49
3014 5134 4.814771 GCGTGGAAAGGTATTGCTACTTAT 59.185 41.667 0.00 0.00 0.00 1.73
3212 5346 3.958798 TCATTAGGACTAGAGGGAAACGG 59.041 47.826 0.00 0.00 0.00 4.44
3479 5617 4.623932 TGCACAACTAGAAAGAGGATGT 57.376 40.909 0.00 0.00 0.00 3.06
3483 5621 7.168219 TGCACAACTAGAAAGAGGATGTATTT 58.832 34.615 0.00 0.00 0.00 1.40
3484 5622 7.119699 TGCACAACTAGAAAGAGGATGTATTTG 59.880 37.037 0.00 0.00 0.00 2.32
3627 5765 5.876357 AGGAAAAGTGGAAGTGCATAGTTA 58.124 37.500 0.00 0.00 0.00 2.24
3751 5895 7.649533 TTCCAAAATGATTGCTCACAGATAT 57.350 32.000 0.00 0.00 33.22 1.63
3752 5896 7.649533 TCCAAAATGATTGCTCACAGATATT 57.350 32.000 0.00 0.00 33.22 1.28
3784 5932 0.984230 GATGGAGGACCTCACAACCA 59.016 55.000 23.06 12.34 37.04 3.67
3948 6100 1.124780 TTTCGACCTCACTTGACCCA 58.875 50.000 0.00 0.00 0.00 4.51
3986 6138 6.534634 AGCCTCAGTTTAACACTTTAGTCAT 58.465 36.000 0.00 0.00 30.92 3.06
3995 6147 9.447040 GTTTAACACTTTAGTCATTTCTTGGAC 57.553 33.333 0.00 0.00 0.00 4.02
4027 6179 8.050778 TGGCAGTGGAAATAACTTAATAACTG 57.949 34.615 0.00 0.00 36.46 3.16
4107 6259 8.555361 GCCTTAAAATAGCACTTTAGATGAGAG 58.445 37.037 0.00 0.00 0.00 3.20
4144 6296 6.598503 TCCATCATCATTAGCAAGATCTGTT 58.401 36.000 0.00 0.00 0.00 3.16
4146 6298 7.658982 TCCATCATCATTAGCAAGATCTGTTAC 59.341 37.037 0.00 0.00 0.00 2.50
4228 6381 6.202762 TCTGCAAGAATGTGGCGTATAATTAG 59.797 38.462 0.00 0.00 42.31 1.73
4287 6440 2.663808 TGTTTGCACTGCGATCATTTG 58.336 42.857 0.00 0.00 0.00 2.32
4692 6845 1.001293 CAAAGCCCTTTCTTTCCTGGC 59.999 52.381 0.00 0.00 42.48 4.85
4705 6858 1.695597 CCTGGCCCCTCCATTCTCT 60.696 63.158 0.00 0.00 45.50 3.10
4706 6859 1.284841 CCTGGCCCCTCCATTCTCTT 61.285 60.000 0.00 0.00 45.50 2.85
4743 6905 9.693739 TTTCAAACATAGAAATAGCCTCCAATA 57.306 29.630 0.00 0.00 30.56 1.90
4778 6940 9.444600 TGACCATTAGAAGGTTGTTAAGAATAC 57.555 33.333 0.00 0.00 40.09 1.89
4779 6941 9.444600 GACCATTAGAAGGTTGTTAAGAATACA 57.555 33.333 0.00 0.00 40.09 2.29
4780 6942 9.802039 ACCATTAGAAGGTTGTTAAGAATACAA 57.198 29.630 0.00 0.00 35.33 2.41
4798 6960 8.993424 AGAATACAATGACTTGGAGGTACTTAT 58.007 33.333 0.00 0.00 35.39 1.73
4819 6981 9.083422 ACTTATGATAGCAAAGCTACTAGATGA 57.917 33.333 0.00 0.00 44.24 2.92
4830 6992 4.464244 AGCTACTAGATGAAGCACTCACAA 59.536 41.667 0.00 0.00 38.75 3.33
4831 6993 4.564769 GCTACTAGATGAAGCACTCACAAC 59.435 45.833 0.00 0.00 36.69 3.32
4881 7043 1.349688 TGGAAATACTGCTGGAACCGT 59.650 47.619 0.00 0.00 0.00 4.83
4981 7143 5.069516 AGACTTTTGTGCTTGATGTGGAATT 59.930 36.000 0.00 0.00 0.00 2.17
4991 7182 6.373774 TGCTTGATGTGGAATTTTGTTTTGTT 59.626 30.769 0.00 0.00 0.00 2.83
4992 7183 7.094463 TGCTTGATGTGGAATTTTGTTTTGTTT 60.094 29.630 0.00 0.00 0.00 2.83
4993 7184 7.754475 GCTTGATGTGGAATTTTGTTTTGTTTT 59.246 29.630 0.00 0.00 0.00 2.43
4994 7185 8.961294 TTGATGTGGAATTTTGTTTTGTTTTG 57.039 26.923 0.00 0.00 0.00 2.44
4995 7186 7.025963 TGATGTGGAATTTTGTTTTGTTTTGC 58.974 30.769 0.00 0.00 0.00 3.68
4996 7187 6.566197 TGTGGAATTTTGTTTTGTTTTGCT 57.434 29.167 0.00 0.00 0.00 3.91
4997 7188 6.606768 TGTGGAATTTTGTTTTGTTTTGCTC 58.393 32.000 0.00 0.00 0.00 4.26
4998 7189 6.205464 TGTGGAATTTTGTTTTGTTTTGCTCA 59.795 30.769 0.00 0.00 0.00 4.26
4999 7190 7.080724 GTGGAATTTTGTTTTGTTTTGCTCAA 58.919 30.769 0.00 0.00 0.00 3.02
5000 7191 7.754475 GTGGAATTTTGTTTTGTTTTGCTCAAT 59.246 29.630 0.00 0.00 0.00 2.57
5001 7192 8.950210 TGGAATTTTGTTTTGTTTTGCTCAATA 58.050 25.926 0.00 0.00 0.00 1.90
5002 7193 9.949174 GGAATTTTGTTTTGTTTTGCTCAATAT 57.051 25.926 0.00 0.00 0.00 1.28
5006 7197 8.939201 TTTGTTTTGTTTTGCTCAATATCTCA 57.061 26.923 0.00 0.00 0.00 3.27
5007 7198 9.545105 TTTGTTTTGTTTTGCTCAATATCTCAT 57.455 25.926 0.00 0.00 0.00 2.90
5008 7199 9.545105 TTGTTTTGTTTTGCTCAATATCTCATT 57.455 25.926 0.00 0.00 0.00 2.57
5009 7200 9.545105 TGTTTTGTTTTGCTCAATATCTCATTT 57.455 25.926 0.00 0.00 0.00 2.32
5011 7202 9.985730 TTTTGTTTTGCTCAATATCTCATTTCT 57.014 25.926 0.00 0.00 0.00 2.52
5028 7219 9.168451 TCTCATTTCTATTACCAATTTTGCGTA 57.832 29.630 0.00 0.00 0.00 4.42
5162 7353 2.026636 GTGGCCCATGACTGGTAAGTTA 60.027 50.000 0.00 0.00 41.37 2.24
5256 7447 6.877855 ACATGGAGTTCTAAGCATAGCATATG 59.122 38.462 0.00 0.00 0.00 1.78
5317 7508 5.278169 CCTGAAGTGTTTGAATGAGTTCCTG 60.278 44.000 0.00 0.00 33.26 3.86
5444 7636 4.682787 CTGGTAGATGCTTGACGTGAATA 58.317 43.478 0.00 0.00 0.00 1.75
5455 7647 3.307554 TGACGTGAATAAGCTCATGGCG 61.308 50.000 0.00 0.00 42.46 5.69
5512 7704 1.696063 CCCAAAGGGCATCATGTAGG 58.304 55.000 0.00 0.00 35.35 3.18
5982 8175 7.505923 CCTTACATCATCCATCGGATATACCTA 59.494 40.741 0.00 0.00 40.98 3.08
5984 8177 7.113658 ACATCATCCATCGGATATACCTAAC 57.886 40.000 0.00 0.00 40.98 2.34
5985 8178 6.667848 ACATCATCCATCGGATATACCTAACA 59.332 38.462 0.00 0.00 40.98 2.41
5987 8180 8.860088 CATCATCCATCGGATATACCTAACATA 58.140 37.037 0.00 0.00 40.98 2.29
6477 8703 4.407296 ACTTGGCAAAGGTTTTGGTGAATA 59.593 37.500 5.66 0.00 37.76 1.75
6478 8704 4.599047 TGGCAAAGGTTTTGGTGAATAG 57.401 40.909 3.97 0.00 0.00 1.73
6479 8705 4.219115 TGGCAAAGGTTTTGGTGAATAGA 58.781 39.130 3.97 0.00 0.00 1.98
6480 8706 4.280677 TGGCAAAGGTTTTGGTGAATAGAG 59.719 41.667 3.97 0.00 0.00 2.43
6481 8707 4.522789 GGCAAAGGTTTTGGTGAATAGAGA 59.477 41.667 3.97 0.00 0.00 3.10
6482 8708 5.010617 GGCAAAGGTTTTGGTGAATAGAGAA 59.989 40.000 3.97 0.00 0.00 2.87
6483 8709 6.295292 GGCAAAGGTTTTGGTGAATAGAGAAT 60.295 38.462 3.97 0.00 0.00 2.40
6484 8710 6.587608 GCAAAGGTTTTGGTGAATAGAGAATG 59.412 38.462 3.97 0.00 0.00 2.67
6485 8711 6.840780 AAGGTTTTGGTGAATAGAGAATGG 57.159 37.500 0.00 0.00 0.00 3.16
6486 8712 6.139679 AGGTTTTGGTGAATAGAGAATGGA 57.860 37.500 0.00 0.00 0.00 3.41
6487 8713 6.735556 AGGTTTTGGTGAATAGAGAATGGAT 58.264 36.000 0.00 0.00 0.00 3.41
6488 8714 6.604795 AGGTTTTGGTGAATAGAGAATGGATG 59.395 38.462 0.00 0.00 0.00 3.51
6489 8715 6.603201 GGTTTTGGTGAATAGAGAATGGATGA 59.397 38.462 0.00 0.00 0.00 2.92
6490 8716 7.201767 GGTTTTGGTGAATAGAGAATGGATGAG 60.202 40.741 0.00 0.00 0.00 2.90
6491 8717 6.813293 TTGGTGAATAGAGAATGGATGAGA 57.187 37.500 0.00 0.00 0.00 3.27
6492 8718 7.384524 TTGGTGAATAGAGAATGGATGAGAT 57.615 36.000 0.00 0.00 0.00 2.75
6493 8719 6.766429 TGGTGAATAGAGAATGGATGAGATG 58.234 40.000 0.00 0.00 0.00 2.90
6494 8720 6.556116 TGGTGAATAGAGAATGGATGAGATGA 59.444 38.462 0.00 0.00 0.00 2.92
6531 8757 7.338703 TGAGGAAAGAGAATGGATGAGATTTTG 59.661 37.037 0.00 0.00 0.00 2.44
6536 8762 5.126707 AGAGAATGGATGAGATTTTGGTTGC 59.873 40.000 0.00 0.00 0.00 4.17
6539 8765 2.562298 TGGATGAGATTTTGGTTGCACC 59.438 45.455 0.00 0.00 39.22 5.01
6653 8880 3.181451 TGGTCCATTGGATCTCATGTAGC 60.181 47.826 16.80 0.00 33.22 3.58
6660 8887 4.077300 TGGATCTCATGTAGCATTGGAC 57.923 45.455 0.00 0.00 0.00 4.02
6697 8924 8.637986 AGCTTTTCCATGTCAACTTTTATGTAA 58.362 29.630 0.00 0.00 0.00 2.41
6778 9005 1.691434 GGGGTGAAAAATGACAAGCCA 59.309 47.619 0.00 0.00 0.00 4.75
6830 9057 3.535561 CATAAGACGGACAGGAGCATTT 58.464 45.455 0.00 0.00 0.00 2.32
6832 9059 2.100605 AGACGGACAGGAGCATTTTC 57.899 50.000 0.00 0.00 0.00 2.29
6903 9138 4.837860 AGCAATGGGATTGGAACACTTTTA 59.162 37.500 0.00 0.00 39.29 1.52
7038 9298 0.837691 ACTGACCATGGGCTCTCACA 60.838 55.000 21.02 0.00 0.00 3.58
7063 9324 1.392589 CCAACAGGCCGAGCAATAAT 58.607 50.000 0.00 0.00 0.00 1.28
7087 9348 2.041701 GGAGCCCTAAACCGTACCATA 58.958 52.381 0.00 0.00 0.00 2.74
7089 9350 2.431782 GAGCCCTAAACCGTACCATACA 59.568 50.000 0.00 0.00 0.00 2.29
7101 9391 6.938507 ACCGTACCATACAGTGAAAATCTAA 58.061 36.000 0.00 0.00 0.00 2.10
7102 9392 7.562135 ACCGTACCATACAGTGAAAATCTAAT 58.438 34.615 0.00 0.00 0.00 1.73
7180 9470 5.170748 CCTAATGCCAAACAAATTGACTCC 58.829 41.667 0.00 0.00 41.85 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.507769 GCCGCTTCCAGCATTTGC 60.508 61.111 0.00 0.00 42.58 3.68
10 11 2.202518 CGCCGCTTCCAGCATTTG 60.203 61.111 0.00 0.00 42.58 2.32
11 12 2.359850 TCGCCGCTTCCAGCATTT 60.360 55.556 0.00 0.00 42.58 2.32
12 13 3.127533 GTCGCCGCTTCCAGCATT 61.128 61.111 0.00 0.00 42.58 3.56
13 14 4.087892 AGTCGCCGCTTCCAGCAT 62.088 61.111 0.00 0.00 42.58 3.79
19 20 3.782244 CACTGCAGTCGCCGCTTC 61.782 66.667 18.64 0.00 37.32 3.86
23 24 3.181967 GTAGCACTGCAGTCGCCG 61.182 66.667 26.94 15.26 37.32 6.46
24 25 3.181967 CGTAGCACTGCAGTCGCC 61.182 66.667 26.94 15.90 37.32 5.54
25 26 2.126463 TCGTAGCACTGCAGTCGC 60.126 61.111 24.74 24.74 39.24 5.19
26 27 2.155194 GCTCGTAGCACTGCAGTCG 61.155 63.158 18.64 17.66 41.89 4.18
27 28 3.773974 GCTCGTAGCACTGCAGTC 58.226 61.111 18.64 12.12 41.89 3.51
63 64 2.261361 CCGCTGACCATCGACACA 59.739 61.111 0.00 0.00 0.00 3.72
82 83 2.125673 CCCCGTAGCAACTCCGTG 60.126 66.667 0.00 0.00 0.00 4.94
88 89 1.579429 CAAACAGCCCCGTAGCAAC 59.421 57.895 0.00 0.00 34.23 4.17
92 93 0.251916 TGATCCAAACAGCCCCGTAG 59.748 55.000 0.00 0.00 0.00 3.51
93 94 0.916086 ATGATCCAAACAGCCCCGTA 59.084 50.000 0.00 0.00 0.00 4.02
94 95 0.039618 AATGATCCAAACAGCCCCGT 59.960 50.000 0.00 0.00 0.00 5.28
95 96 0.457035 CAATGATCCAAACAGCCCCG 59.543 55.000 0.00 0.00 0.00 5.73
96 97 0.176449 GCAATGATCCAAACAGCCCC 59.824 55.000 0.00 0.00 0.00 5.80
97 98 0.176449 GGCAATGATCCAAACAGCCC 59.824 55.000 0.00 0.00 34.71 5.19
98 99 0.176449 GGGCAATGATCCAAACAGCC 59.824 55.000 0.00 0.00 39.86 4.85
99 100 0.176449 GGGGCAATGATCCAAACAGC 59.824 55.000 0.00 0.00 0.00 4.40
100 101 1.559368 TGGGGCAATGATCCAAACAG 58.441 50.000 0.00 0.00 0.00 3.16
101 102 1.901159 CTTGGGGCAATGATCCAAACA 59.099 47.619 8.55 0.00 39.69 2.83
102 103 1.207811 CCTTGGGGCAATGATCCAAAC 59.792 52.381 8.55 0.00 39.69 2.93
103 104 1.570803 CCTTGGGGCAATGATCCAAA 58.429 50.000 8.55 0.00 39.69 3.28
104 105 3.303462 CCTTGGGGCAATGATCCAA 57.697 52.632 7.33 7.33 38.13 3.53
116 117 3.936772 TTTAGCAGGGCGCCTTGGG 62.937 63.158 36.00 19.54 44.04 4.12
117 118 1.322538 ATTTTAGCAGGGCGCCTTGG 61.323 55.000 36.00 21.95 44.04 3.61
118 119 1.388547 TATTTTAGCAGGGCGCCTTG 58.611 50.000 32.52 32.52 44.04 3.61
119 120 2.362077 CAATATTTTAGCAGGGCGCCTT 59.638 45.455 28.56 18.19 44.04 4.35
120 121 1.956477 CAATATTTTAGCAGGGCGCCT 59.044 47.619 28.56 9.11 44.04 5.52
121 122 1.000274 CCAATATTTTAGCAGGGCGCC 60.000 52.381 21.18 21.18 44.04 6.53
122 123 1.681264 ACCAATATTTTAGCAGGGCGC 59.319 47.619 0.00 0.00 42.91 6.53
123 124 3.058224 GCTACCAATATTTTAGCAGGGCG 60.058 47.826 16.24 0.00 38.50 6.13
124 125 4.022849 CAGCTACCAATATTTTAGCAGGGC 60.023 45.833 20.58 5.11 40.67 5.19
125 126 5.239525 GTCAGCTACCAATATTTTAGCAGGG 59.760 44.000 20.58 13.02 40.67 4.45
126 127 6.305693 GTCAGCTACCAATATTTTAGCAGG 57.694 41.667 20.58 14.69 40.67 4.85
157 158 2.418609 GCTTGCAACCAAATGGATACCC 60.419 50.000 6.42 0.00 38.94 3.69
158 159 2.418609 GGCTTGCAACCAAATGGATACC 60.419 50.000 6.42 0.00 38.94 2.73
159 160 2.233431 TGGCTTGCAACCAAATGGATAC 59.767 45.455 15.57 0.00 38.94 2.24
160 161 2.533916 TGGCTTGCAACCAAATGGATA 58.466 42.857 15.57 0.00 38.94 2.59
161 162 1.350071 TGGCTTGCAACCAAATGGAT 58.650 45.000 15.57 0.00 38.94 3.41
162 163 1.126488 TTGGCTTGCAACCAAATGGA 58.874 45.000 22.92 7.73 44.11 3.41
163 164 3.702147 TTGGCTTGCAACCAAATGG 57.298 47.368 22.92 0.00 44.11 3.16
167 168 4.070716 CCAATTATTTGGCTTGCAACCAA 58.929 39.130 21.93 21.93 45.71 3.67
168 169 3.672808 CCAATTATTTGGCTTGCAACCA 58.327 40.909 14.38 14.38 45.71 3.67
179 180 1.067283 TGTGGGCGTGCCAATTATTTG 60.067 47.619 13.76 0.00 37.98 2.32
180 181 1.067213 GTGTGGGCGTGCCAATTATTT 60.067 47.619 13.76 0.00 37.98 1.40
181 182 0.530288 GTGTGGGCGTGCCAATTATT 59.470 50.000 13.76 0.00 37.98 1.40
182 183 1.319614 GGTGTGGGCGTGCCAATTAT 61.320 55.000 13.76 0.00 37.98 1.28
183 184 1.974343 GGTGTGGGCGTGCCAATTA 60.974 57.895 13.76 0.00 37.98 1.40
184 185 3.302344 GGTGTGGGCGTGCCAATT 61.302 61.111 13.76 0.00 37.98 2.32
185 186 4.284550 AGGTGTGGGCGTGCCAAT 62.285 61.111 13.76 0.00 37.98 3.16
186 187 4.947147 GAGGTGTGGGCGTGCCAA 62.947 66.667 13.76 0.00 37.98 4.52
190 191 3.765894 TTGTGGAGGTGTGGGCGTG 62.766 63.158 0.00 0.00 0.00 5.34
191 192 3.484806 TTGTGGAGGTGTGGGCGT 61.485 61.111 0.00 0.00 0.00 5.68
192 193 2.978010 GTTGTGGAGGTGTGGGCG 60.978 66.667 0.00 0.00 0.00 6.13
193 194 1.228552 ATGTTGTGGAGGTGTGGGC 60.229 57.895 0.00 0.00 0.00 5.36
194 195 0.401738 AGATGTTGTGGAGGTGTGGG 59.598 55.000 0.00 0.00 0.00 4.61
195 196 1.349026 AGAGATGTTGTGGAGGTGTGG 59.651 52.381 0.00 0.00 0.00 4.17
196 197 2.847327 AGAGATGTTGTGGAGGTGTG 57.153 50.000 0.00 0.00 0.00 3.82
197 198 3.511477 ACTAGAGATGTTGTGGAGGTGT 58.489 45.455 0.00 0.00 0.00 4.16
198 199 4.021104 TGAACTAGAGATGTTGTGGAGGTG 60.021 45.833 0.00 0.00 0.00 4.00
199 200 4.160329 TGAACTAGAGATGTTGTGGAGGT 58.840 43.478 0.00 0.00 0.00 3.85
200 201 4.808414 TGAACTAGAGATGTTGTGGAGG 57.192 45.455 0.00 0.00 0.00 4.30
201 202 7.102346 AGAATTGAACTAGAGATGTTGTGGAG 58.898 38.462 0.00 0.00 0.00 3.86
202 203 7.009179 AGAATTGAACTAGAGATGTTGTGGA 57.991 36.000 0.00 0.00 0.00 4.02
203 204 6.875726 TGAGAATTGAACTAGAGATGTTGTGG 59.124 38.462 0.00 0.00 0.00 4.17
204 205 7.412781 GCTGAGAATTGAACTAGAGATGTTGTG 60.413 40.741 0.00 0.00 0.00 3.33
205 206 6.593382 GCTGAGAATTGAACTAGAGATGTTGT 59.407 38.462 0.00 0.00 0.00 3.32
206 207 6.036953 GGCTGAGAATTGAACTAGAGATGTTG 59.963 42.308 0.00 0.00 0.00 3.33
207 208 6.112058 GGCTGAGAATTGAACTAGAGATGTT 58.888 40.000 0.00 0.00 0.00 2.71
208 209 5.188555 TGGCTGAGAATTGAACTAGAGATGT 59.811 40.000 0.00 0.00 0.00 3.06
209 210 5.668471 TGGCTGAGAATTGAACTAGAGATG 58.332 41.667 0.00 0.00 0.00 2.90
210 211 5.946942 TGGCTGAGAATTGAACTAGAGAT 57.053 39.130 0.00 0.00 0.00 2.75
211 212 5.745312 TTGGCTGAGAATTGAACTAGAGA 57.255 39.130 0.00 0.00 0.00 3.10
212 213 8.674263 AATATTGGCTGAGAATTGAACTAGAG 57.326 34.615 0.00 0.00 0.00 2.43
213 214 9.466497 AAAATATTGGCTGAGAATTGAACTAGA 57.534 29.630 0.00 0.00 0.00 2.43
214 215 9.512435 CAAAATATTGGCTGAGAATTGAACTAG 57.488 33.333 0.00 0.00 32.69 2.57
231 232 3.207778 CCCATGCCTTGCCAAAATATTG 58.792 45.455 0.00 0.00 36.25 1.90
232 233 2.421811 GCCCATGCCTTGCCAAAATATT 60.422 45.455 0.00 0.00 0.00 1.28
233 234 1.141455 GCCCATGCCTTGCCAAAATAT 59.859 47.619 0.00 0.00 0.00 1.28
234 235 0.540923 GCCCATGCCTTGCCAAAATA 59.459 50.000 0.00 0.00 0.00 1.40
235 236 1.300634 GCCCATGCCTTGCCAAAAT 59.699 52.632 0.00 0.00 0.00 1.82
236 237 2.749016 GCCCATGCCTTGCCAAAA 59.251 55.556 0.00 0.00 0.00 2.44
237 238 3.693471 CGCCCATGCCTTGCCAAA 61.693 61.111 0.00 0.00 0.00 3.28
247 248 4.569180 AGGAATCGGCCGCCCATG 62.569 66.667 23.51 0.00 0.00 3.66
248 249 4.569180 CAGGAATCGGCCGCCCAT 62.569 66.667 23.51 6.03 0.00 4.00
255 256 0.251341 ATATTGGCCCAGGAATCGGC 60.251 55.000 0.00 0.00 44.92 5.54
256 257 2.292828 AATATTGGCCCAGGAATCGG 57.707 50.000 0.00 0.00 0.00 4.18
257 258 3.981211 CAAAATATTGGCCCAGGAATCG 58.019 45.455 0.00 0.00 32.69 3.34
269 270 3.583806 TCGTTGGCTTGCCAAAATATTG 58.416 40.909 26.12 13.03 36.25 1.90
270 271 3.951775 TCGTTGGCTTGCCAAAATATT 57.048 38.095 26.12 0.00 0.00 1.28
271 272 4.183101 CAATCGTTGGCTTGCCAAAATAT 58.817 39.130 26.12 16.92 0.00 1.28
272 273 3.583806 CAATCGTTGGCTTGCCAAAATA 58.416 40.909 26.12 15.59 0.00 1.40
273 274 2.415776 CAATCGTTGGCTTGCCAAAAT 58.584 42.857 26.12 19.35 0.00 1.82
274 275 1.539929 CCAATCGTTGGCTTGCCAAAA 60.540 47.619 26.12 18.12 45.17 2.44
275 276 0.033228 CCAATCGTTGGCTTGCCAAA 59.967 50.000 26.12 13.99 45.17 3.28
276 277 1.664873 CCAATCGTTGGCTTGCCAA 59.335 52.632 21.59 21.59 45.17 4.52
277 278 3.364442 CCAATCGTTGGCTTGCCA 58.636 55.556 10.65 10.65 45.17 4.92
285 286 1.213537 CCAGCCTTGCCAATCGTTG 59.786 57.895 0.00 0.00 0.00 4.10
286 287 2.639327 GCCAGCCTTGCCAATCGTT 61.639 57.895 0.00 0.00 0.00 3.85
287 288 3.064324 GCCAGCCTTGCCAATCGT 61.064 61.111 0.00 0.00 0.00 3.73
288 289 4.183686 CGCCAGCCTTGCCAATCG 62.184 66.667 0.00 0.00 0.00 3.34
289 290 4.503314 GCGCCAGCCTTGCCAATC 62.503 66.667 0.00 0.00 37.42 2.67
299 300 4.410743 GTTTGAGCCAGCGCCAGC 62.411 66.667 11.10 11.10 45.58 4.85
300 301 3.741476 GGTTTGAGCCAGCGCCAG 61.741 66.667 2.29 0.00 34.57 4.85
301 302 4.577677 TGGTTTGAGCCAGCGCCA 62.578 61.111 2.29 0.00 33.97 5.69
302 303 2.855514 TTTGGTTTGAGCCAGCGCC 61.856 57.895 2.29 0.00 40.01 6.53
303 304 1.661509 GTTTGGTTTGAGCCAGCGC 60.662 57.895 0.00 0.00 40.01 5.92
304 305 0.318107 CTGTTTGGTTTGAGCCAGCG 60.318 55.000 0.00 0.00 40.01 5.18
305 306 1.032014 TCTGTTTGGTTTGAGCCAGC 58.968 50.000 0.00 0.00 40.01 4.85
306 307 1.338020 GGTCTGTTTGGTTTGAGCCAG 59.662 52.381 0.00 0.00 40.01 4.85
307 308 1.398692 GGTCTGTTTGGTTTGAGCCA 58.601 50.000 0.00 0.00 36.62 4.75
308 309 0.673985 GGGTCTGTTTGGTTTGAGCC 59.326 55.000 0.00 0.00 39.41 4.70
309 310 1.692411 AGGGTCTGTTTGGTTTGAGC 58.308 50.000 0.00 0.00 0.00 4.26
310 311 2.806244 CGTAGGGTCTGTTTGGTTTGAG 59.194 50.000 0.00 0.00 0.00 3.02
311 312 2.435069 TCGTAGGGTCTGTTTGGTTTGA 59.565 45.455 0.00 0.00 0.00 2.69
312 313 2.546789 GTCGTAGGGTCTGTTTGGTTTG 59.453 50.000 0.00 0.00 0.00 2.93
313 314 2.436911 AGTCGTAGGGTCTGTTTGGTTT 59.563 45.455 0.00 0.00 0.00 3.27
314 315 2.044758 AGTCGTAGGGTCTGTTTGGTT 58.955 47.619 0.00 0.00 0.00 3.67
315 316 1.713297 AGTCGTAGGGTCTGTTTGGT 58.287 50.000 0.00 0.00 0.00 3.67
316 317 2.036733 TGAAGTCGTAGGGTCTGTTTGG 59.963 50.000 0.00 0.00 0.00 3.28
317 318 3.380479 TGAAGTCGTAGGGTCTGTTTG 57.620 47.619 0.00 0.00 0.00 2.93
318 319 3.367087 CGATGAAGTCGTAGGGTCTGTTT 60.367 47.826 0.00 0.00 45.19 2.83
319 320 2.163815 CGATGAAGTCGTAGGGTCTGTT 59.836 50.000 0.00 0.00 45.19 3.16
320 321 1.743958 CGATGAAGTCGTAGGGTCTGT 59.256 52.381 0.00 0.00 45.19 3.41
321 322 2.476873 CGATGAAGTCGTAGGGTCTG 57.523 55.000 0.00 0.00 45.19 3.51
362 363 1.593750 CAGATCGCAGCTAGCCACC 60.594 63.158 12.13 0.00 41.38 4.61
443 444 4.498520 CTCGCCGCACCTCATCGT 62.499 66.667 0.00 0.00 0.00 3.73
525 526 4.181010 CATGCACCCCCTCCCTCG 62.181 72.222 0.00 0.00 0.00 4.63
585 586 3.636153 AAATGGTTCACTAGAGCTCCC 57.364 47.619 10.93 2.78 0.00 4.30
610 611 2.670414 CGTATAGACCGTCGGATCTACC 59.330 54.545 20.51 13.12 30.34 3.18
611 612 3.579709 TCGTATAGACCGTCGGATCTAC 58.420 50.000 20.51 11.57 30.34 2.59
660 661 2.554272 CGCCCCAAAGTTTCGACG 59.446 61.111 0.00 0.00 0.00 5.12
666 667 1.271926 ACTGATAAGCGCCCCAAAGTT 60.272 47.619 2.29 0.00 0.00 2.66
709 710 8.767478 AAATCATGGACATTTCTGCTAAAAAG 57.233 30.769 0.00 0.00 0.00 2.27
827 1043 6.097839 GGAGGAGTATGTACAGTGGTTGATAA 59.902 42.308 0.33 0.00 0.00 1.75
1131 3093 2.476126 AGACGGACGAGAAGAAGAGA 57.524 50.000 0.00 0.00 0.00 3.10
1191 3153 2.893398 GAGATGGCGACGGAAGGT 59.107 61.111 0.00 0.00 0.00 3.50
1275 3237 0.394565 GCGAGGCATTGGGAGTAGAT 59.605 55.000 0.00 0.00 0.00 1.98
1326 3315 2.430367 GGAGTTGGCGTTGGAGGT 59.570 61.111 0.00 0.00 0.00 3.85
1429 3430 2.677003 CGGCGCCGATGTCAAAGTT 61.677 57.895 44.86 0.00 42.83 2.66
1788 3791 3.866883 ATTCCATTGCAGTAAAACCGG 57.133 42.857 0.00 0.00 0.00 5.28
1826 3829 6.348868 GCAGAAACCCAAGAAGAAGATTACTG 60.349 42.308 0.00 0.00 0.00 2.74
1889 3892 4.035675 AGCTAAAACTTTGAGTGCTGTGAC 59.964 41.667 0.00 0.00 0.00 3.67
1954 3959 7.640240 GGTTCAATTCGATTCTGTAGCAATAAC 59.360 37.037 0.00 0.00 0.00 1.89
2243 4256 5.364446 AGTTACCTTTCCCGTTTCCAAAAAT 59.636 36.000 0.00 0.00 0.00 1.82
2342 4355 3.464907 CACTGATGCATCTAGAACCCAG 58.535 50.000 26.32 15.70 0.00 4.45
2614 4627 7.397194 CAAACTGTATCTGATTCTCATGAACG 58.603 38.462 0.00 0.00 34.71 3.95
2650 4663 1.580942 CACCATTGCAGGAACACCG 59.419 57.895 0.00 0.00 0.00 4.94
2789 4874 8.196771 GGTGCATTATCAATAACAGGAATGAAA 58.803 33.333 0.00 0.00 0.00 2.69
2796 4881 5.278169 GCTCAGGTGCATTATCAATAACAGG 60.278 44.000 0.00 0.00 0.00 4.00
2799 4884 5.756195 TGCTCAGGTGCATTATCAATAAC 57.244 39.130 0.00 0.00 38.12 1.89
2812 4897 2.550830 AAGTAGGTGTTGCTCAGGTG 57.449 50.000 0.00 0.00 0.00 4.00
2813 4898 4.910458 ATAAAGTAGGTGTTGCTCAGGT 57.090 40.909 0.00 0.00 0.00 4.00
2814 4899 4.636206 GGAATAAAGTAGGTGTTGCTCAGG 59.364 45.833 0.00 0.00 0.00 3.86
2815 4900 5.491982 AGGAATAAAGTAGGTGTTGCTCAG 58.508 41.667 0.00 0.00 0.00 3.35
2816 4901 5.499004 AGGAATAAAGTAGGTGTTGCTCA 57.501 39.130 0.00 0.00 0.00 4.26
2817 4902 5.063564 CGAAGGAATAAAGTAGGTGTTGCTC 59.936 44.000 0.00 0.00 0.00 4.26
2818 4903 4.935808 CGAAGGAATAAAGTAGGTGTTGCT 59.064 41.667 0.00 0.00 0.00 3.91
2819 4904 4.933400 TCGAAGGAATAAAGTAGGTGTTGC 59.067 41.667 0.00 0.00 0.00 4.17
2820 4905 7.333423 TCAATCGAAGGAATAAAGTAGGTGTTG 59.667 37.037 0.00 0.00 0.00 3.33
2821 4906 7.333672 GTCAATCGAAGGAATAAAGTAGGTGTT 59.666 37.037 0.00 0.00 0.00 3.32
2822 4907 6.817140 GTCAATCGAAGGAATAAAGTAGGTGT 59.183 38.462 0.00 0.00 0.00 4.16
2924 5043 2.576191 AGCAAAATACCCACCAGCTCTA 59.424 45.455 0.00 0.00 0.00 2.43
3069 5194 8.985315 ATAGATGCATCTTGTGGAAAAATAGA 57.015 30.769 32.94 11.24 38.32 1.98
3171 5305 7.442062 CCTAATGAACTTTTTGTTTCCATTGCT 59.558 33.333 0.00 0.00 39.30 3.91
3173 5307 8.764287 GTCCTAATGAACTTTTTGTTTCCATTG 58.236 33.333 0.00 0.00 39.30 2.82
3185 5319 7.395617 GTTTCCCTCTAGTCCTAATGAACTTT 58.604 38.462 0.00 0.00 0.00 2.66
3212 5346 0.321919 TTCTGGCAGTGCATCAGACC 60.322 55.000 19.79 1.43 37.28 3.85
3271 5406 6.262944 TGCAATAGGATAGCACGAATCAAAAT 59.737 34.615 0.00 0.00 32.55 1.82
3479 5617 7.725818 TTGTTCACGTGTAACCATACAAATA 57.274 32.000 16.51 0.00 43.41 1.40
3483 5621 7.908827 AATATTGTTCACGTGTAACCATACA 57.091 32.000 16.51 6.90 39.70 2.29
3484 5622 9.615295 AAAAATATTGTTCACGTGTAACCATAC 57.385 29.630 16.51 4.53 0.00 2.39
3627 5765 3.242011 ACATCCCAAGGATTTGCAGTTT 58.758 40.909 0.00 0.00 39.79 2.66
3670 5809 9.381038 AGGCTTCTTGACCTGATATAAGTAATA 57.619 33.333 0.00 0.00 34.07 0.98
3756 5900 4.223032 GTGAGGTCCTCCATCTCTACAAAA 59.777 45.833 16.60 0.00 35.89 2.44
3784 5932 2.092429 TCACAAGCTCCCAACAAAGTCT 60.092 45.455 0.00 0.00 0.00 3.24
3986 6138 2.951642 CTGCCAAGACTTGTCCAAGAAA 59.048 45.455 14.03 0.00 40.79 2.52
3995 6147 4.520492 AGTTATTTCCACTGCCAAGACTTG 59.480 41.667 8.31 8.31 0.00 3.16
4027 6179 4.519540 AAACAATGTGGCCAGTAATGAC 57.480 40.909 5.11 0.00 0.00 3.06
4107 6259 5.428496 TGATGATGGAAATGAAAGATCGC 57.572 39.130 0.00 0.00 0.00 4.58
4144 6296 3.559655 GTCATACTGATGGCAAATGCGTA 59.440 43.478 0.00 0.00 43.26 4.42
4146 6298 2.355444 TGTCATACTGATGGCAAATGCG 59.645 45.455 0.00 0.00 44.69 4.73
4287 6440 8.710551 CAGTCTATATGAATTTCAGCATCTGTC 58.289 37.037 5.21 0.00 32.61 3.51
4692 6845 3.265479 ACAAGAGAAAGAGAATGGAGGGG 59.735 47.826 0.00 0.00 0.00 4.79
4743 6905 3.261897 CCTTCTAATGGTCAGAGGTGTGT 59.738 47.826 0.00 0.00 0.00 3.72
4778 6940 7.386299 GCTATCATAAGTACCTCCAAGTCATTG 59.614 40.741 0.00 0.00 36.09 2.82
4779 6941 7.071196 TGCTATCATAAGTACCTCCAAGTCATT 59.929 37.037 0.00 0.00 0.00 2.57
4780 6942 6.554982 TGCTATCATAAGTACCTCCAAGTCAT 59.445 38.462 0.00 0.00 0.00 3.06
4781 6943 5.897250 TGCTATCATAAGTACCTCCAAGTCA 59.103 40.000 0.00 0.00 0.00 3.41
4798 6960 6.183360 TGCTTCATCTAGTAGCTTTGCTATCA 60.183 38.462 0.00 0.00 43.30 2.15
4819 6981 2.722094 TCCAAACAGTTGTGAGTGCTT 58.278 42.857 0.00 0.00 32.40 3.91
4830 6992 4.102524 TCGGGCTATATTCATCCAAACAGT 59.897 41.667 0.00 0.00 0.00 3.55
4831 6993 4.641396 TCGGGCTATATTCATCCAAACAG 58.359 43.478 0.00 0.00 0.00 3.16
4881 7043 0.531974 GTTGTGACAGCCGAGGTCAA 60.532 55.000 5.54 0.00 45.96 3.18
4981 7143 8.939201 TGAGATATTGAGCAAAACAAAACAAA 57.061 26.923 0.00 0.00 0.00 2.83
5001 7192 8.686334 ACGCAAAATTGGTAATAGAAATGAGAT 58.314 29.630 0.00 0.00 0.00 2.75
5002 7193 8.050778 ACGCAAAATTGGTAATAGAAATGAGA 57.949 30.769 0.00 0.00 0.00 3.27
5003 7194 9.950680 ATACGCAAAATTGGTAATAGAAATGAG 57.049 29.630 0.00 0.00 0.00 2.90
5007 7198 9.398538 ACCTATACGCAAAATTGGTAATAGAAA 57.601 29.630 0.00 0.00 31.82 2.52
5008 7199 8.967664 ACCTATACGCAAAATTGGTAATAGAA 57.032 30.769 0.00 0.00 31.82 2.10
5009 7200 8.967664 AACCTATACGCAAAATTGGTAATAGA 57.032 30.769 0.00 0.00 32.31 1.98
5010 7201 9.445786 CAAACCTATACGCAAAATTGGTAATAG 57.554 33.333 0.00 0.00 32.31 1.73
5011 7202 7.916450 GCAAACCTATACGCAAAATTGGTAATA 59.084 33.333 0.00 0.00 32.31 0.98
5012 7203 6.754675 GCAAACCTATACGCAAAATTGGTAAT 59.245 34.615 0.00 0.00 32.31 1.89
5013 7204 6.094061 GCAAACCTATACGCAAAATTGGTAA 58.906 36.000 0.00 0.00 32.31 2.85
5014 7205 5.183331 TGCAAACCTATACGCAAAATTGGTA 59.817 36.000 0.00 0.00 32.31 3.25
5015 7206 4.021894 TGCAAACCTATACGCAAAATTGGT 60.022 37.500 0.00 0.00 34.50 3.67
5016 7207 4.489810 TGCAAACCTATACGCAAAATTGG 58.510 39.130 0.00 0.00 0.00 3.16
5017 7208 4.031652 GCTGCAAACCTATACGCAAAATTG 59.968 41.667 0.00 0.00 33.21 2.32
5018 7209 4.082245 AGCTGCAAACCTATACGCAAAATT 60.082 37.500 1.02 0.00 33.21 1.82
5019 7210 3.443681 AGCTGCAAACCTATACGCAAAAT 59.556 39.130 1.02 0.00 33.21 1.82
5020 7211 2.817258 AGCTGCAAACCTATACGCAAAA 59.183 40.909 1.02 0.00 33.21 2.44
5162 7353 2.870435 GCCAGGCAACGAATATACCGAT 60.870 50.000 6.55 0.00 46.39 4.18
5317 7508 1.089920 ATGCATGGCAACTCGTTCTC 58.910 50.000 0.00 0.00 43.62 2.87
5366 7558 8.882415 AAAATATAGGAAGCAAAGCATTGATG 57.118 30.769 5.73 0.00 38.94 3.07
5444 7636 1.003118 TGGAAACTACGCCATGAGCTT 59.997 47.619 0.00 0.00 40.39 3.74
5455 7647 7.329588 TCTTCAAGAAAAAGGTGGAAACTAC 57.670 36.000 0.00 0.00 0.00 2.73
5512 7704 2.733956 TGGGCAATATCAAGGTGGAAC 58.266 47.619 0.00 0.00 0.00 3.62
5614 7806 3.110705 TCTGCTCCTTTGAGAATAGCCT 58.889 45.455 0.00 0.00 41.42 4.58
5982 8175 7.633789 ACACCTGGTAATGAGAGAAATATGTT 58.366 34.615 0.00 0.00 0.00 2.71
6010 8216 3.261643 TCTCAAGCAAGATAACTGAGGCA 59.738 43.478 0.00 0.00 0.00 4.75
6064 8270 9.720769 ATCGTTTCCTTTTTATCACGGATATAT 57.279 29.630 0.00 0.00 0.00 0.86
6318 8544 3.068165 CCTATCTACGGAGCACAATGTCA 59.932 47.826 0.00 0.00 0.00 3.58
6502 8728 6.782986 TCTCATCCATTCTCTTTCCTCAAAA 58.217 36.000 0.00 0.00 0.00 2.44
6505 8731 6.572182 AATCTCATCCATTCTCTTTCCTCA 57.428 37.500 0.00 0.00 0.00 3.86
6506 8732 7.201803 CCAAAATCTCATCCATTCTCTTTCCTC 60.202 40.741 0.00 0.00 0.00 3.71
6536 8762 0.523072 CTTTTCATCACAGCCCGGTG 59.477 55.000 0.00 0.00 40.16 4.94
6539 8765 1.466167 CACTCTTTTCATCACAGCCCG 59.534 52.381 0.00 0.00 0.00 6.13
6653 8880 1.195448 GCTGTCGACACAAGTCCAATG 59.805 52.381 15.76 1.68 41.87 2.82
6660 8887 1.939934 TGGAAAAGCTGTCGACACAAG 59.060 47.619 15.76 6.53 29.82 3.16
6697 8924 5.948162 ACAGCATGGAAGAACATATCAAAGT 59.052 36.000 0.00 0.00 43.62 2.66
6741 8968 2.091389 ACCCCCACATATAGCATGCAAA 60.091 45.455 21.98 7.96 0.00 3.68
6809 9036 2.898729 ATGCTCCTGTCCGTCTTATG 57.101 50.000 0.00 0.00 0.00 1.90
6830 9057 5.677319 ATCCTACAGACCGATCAAAAGAA 57.323 39.130 0.00 0.00 0.00 2.52
6832 9059 6.743575 AAAATCCTACAGACCGATCAAAAG 57.256 37.500 0.00 0.00 0.00 2.27
6869 9097 4.748277 ATCCCATTGCTCATTTCCAAAG 57.252 40.909 0.00 0.00 0.00 2.77
6886 9119 7.666623 TCTCAAAATAAAAGTGTTCCAATCCC 58.333 34.615 0.00 0.00 0.00 3.85
6928 9163 6.490040 AGCTTTAACAAAAATCCTACTGCTCA 59.510 34.615 0.00 0.00 0.00 4.26
6964 9223 2.296073 TACAATGTTCCAACCCCACC 57.704 50.000 0.00 0.00 0.00 4.61
6995 9255 3.018856 TGCCGATCGGACTCTAAACTAA 58.981 45.455 37.64 6.82 37.50 2.24
6996 9256 2.646930 TGCCGATCGGACTCTAAACTA 58.353 47.619 37.64 7.51 37.50 2.24
7063 9324 0.395586 TACGGTTTAGGGCTCCGCTA 60.396 55.000 2.72 0.00 46.92 4.26
7180 9470 4.842091 GAGCTTTGCCCGCATGCG 62.842 66.667 32.60 32.60 39.44 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.