Multiple sequence alignment - TraesCS3D01G355100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G355100 | chr3D | 100.000 | 8482 | 0 | 0 | 1 | 8482 | 466292218 | 466283737 | 0.000000e+00 | 15664.0 |
1 | TraesCS3D01G355100 | chr3D | 95.096 | 1774 | 65 | 9 | 3314 | 5077 | 341506622 | 341508383 | 0.000000e+00 | 2774.0 |
2 | TraesCS3D01G355100 | chr3D | 86.739 | 460 | 44 | 10 | 2011 | 2461 | 466289603 | 466289152 | 5.910000e-136 | 496.0 |
3 | TraesCS3D01G355100 | chr3D | 86.739 | 460 | 44 | 10 | 2616 | 3067 | 466290208 | 466289758 | 5.910000e-136 | 496.0 |
4 | TraesCS3D01G355100 | chr3D | 91.630 | 227 | 17 | 2 | 4 | 229 | 499865860 | 499865635 | 6.390000e-81 | 313.0 |
5 | TraesCS3D01G355100 | chr3D | 89.316 | 234 | 21 | 4 | 1 | 232 | 356979794 | 356980025 | 3.000000e-74 | 291.0 |
6 | TraesCS3D01G355100 | chr3D | 97.122 | 139 | 4 | 0 | 3180 | 3318 | 327325984 | 327325846 | 1.420000e-57 | 235.0 |
7 | TraesCS3D01G355100 | chr3D | 85.088 | 228 | 34 | 0 | 1 | 228 | 56603464 | 56603691 | 5.120000e-57 | 233.0 |
8 | TraesCS3D01G355100 | chr3D | 80.702 | 114 | 22 | 0 | 345 | 458 | 497823428 | 497823315 | 1.170000e-13 | 89.8 |
9 | TraesCS3D01G355100 | chr3A | 95.662 | 3043 | 88 | 13 | 5079 | 8092 | 609480200 | 609477173 | 0.000000e+00 | 4848.0 |
10 | TraesCS3D01G355100 | chr3A | 93.759 | 1442 | 57 | 10 | 601 | 2024 | 609483911 | 609482485 | 0.000000e+00 | 2134.0 |
11 | TraesCS3D01G355100 | chr3A | 94.264 | 1168 | 52 | 11 | 2018 | 3182 | 609481365 | 609480210 | 0.000000e+00 | 1772.0 |
12 | TraesCS3D01G355100 | chr3A | 94.751 | 762 | 26 | 7 | 4318 | 5077 | 308689281 | 308688532 | 0.000000e+00 | 1173.0 |
13 | TraesCS3D01G355100 | chr3A | 86.334 | 461 | 45 | 11 | 2011 | 2462 | 609480773 | 609480322 | 3.560000e-133 | 486.0 |
14 | TraesCS3D01G355100 | chr3A | 91.011 | 356 | 32 | 0 | 231 | 586 | 609484164 | 609483809 | 1.660000e-131 | 481.0 |
15 | TraesCS3D01G355100 | chr3A | 91.935 | 124 | 9 | 1 | 8273 | 8395 | 609476924 | 609476801 | 1.130000e-38 | 172.0 |
16 | TraesCS3D01G355100 | chr3A | 90.769 | 65 | 5 | 1 | 8186 | 8249 | 8867840 | 8867776 | 1.520000e-12 | 86.1 |
17 | TraesCS3D01G355100 | chr3A | 89.231 | 65 | 7 | 0 | 373 | 437 | 145649753 | 145649817 | 1.960000e-11 | 82.4 |
18 | TraesCS3D01G355100 | chr3B | 96.743 | 2057 | 46 | 9 | 5600 | 7644 | 620206777 | 620204730 | 0.000000e+00 | 3408.0 |
19 | TraesCS3D01G355100 | chr3B | 95.739 | 1760 | 58 | 6 | 3314 | 5066 | 275340347 | 275342096 | 0.000000e+00 | 2819.0 |
20 | TraesCS3D01G355100 | chr3B | 94.303 | 1457 | 61 | 11 | 1740 | 3182 | 620208933 | 620207485 | 0.000000e+00 | 2211.0 |
21 | TraesCS3D01G355100 | chr3B | 95.648 | 1034 | 28 | 6 | 705 | 1731 | 620210111 | 620209088 | 0.000000e+00 | 1644.0 |
22 | TraesCS3D01G355100 | chr3B | 94.815 | 540 | 18 | 3 | 5079 | 5615 | 620207475 | 620206943 | 0.000000e+00 | 833.0 |
23 | TraesCS3D01G355100 | chr3B | 88.069 | 461 | 44 | 6 | 2610 | 3067 | 620208656 | 620208204 | 3.480000e-148 | 536.0 |
24 | TraesCS3D01G355100 | chr3B | 86.304 | 460 | 45 | 11 | 2011 | 2461 | 620208050 | 620207600 | 1.280000e-132 | 484.0 |
25 | TraesCS3D01G355100 | chr3B | 87.173 | 382 | 19 | 11 | 7691 | 8071 | 620204577 | 620204225 | 2.850000e-109 | 407.0 |
26 | TraesCS3D01G355100 | chr3B | 96.018 | 226 | 9 | 0 | 8257 | 8482 | 620203237 | 620203012 | 1.350000e-97 | 368.0 |
27 | TraesCS3D01G355100 | chr3B | 89.700 | 233 | 21 | 3 | 4 | 234 | 512861160 | 512860929 | 2.320000e-75 | 294.0 |
28 | TraesCS3D01G355100 | chr3B | 97.810 | 137 | 3 | 0 | 3180 | 3316 | 669125398 | 669125534 | 3.960000e-58 | 237.0 |
29 | TraesCS3D01G355100 | chr3B | 81.739 | 115 | 21 | 0 | 346 | 460 | 666473184 | 666473298 | 7.010000e-16 | 97.1 |
30 | TraesCS3D01G355100 | chr4A | 95.989 | 1770 | 55 | 7 | 3314 | 5074 | 495111450 | 495113212 | 0.000000e+00 | 2861.0 |
31 | TraesCS3D01G355100 | chr4A | 95.406 | 1763 | 57 | 7 | 3314 | 5067 | 48292274 | 48294021 | 0.000000e+00 | 2785.0 |
32 | TraesCS3D01G355100 | chr4A | 89.796 | 49 | 4 | 1 | 8186 | 8233 | 87402615 | 87402663 | 2.560000e-05 | 62.1 |
33 | TraesCS3D01G355100 | chr2A | 95.817 | 1769 | 52 | 7 | 3314 | 5073 | 578392234 | 578390479 | 0.000000e+00 | 2837.0 |
34 | TraesCS3D01G355100 | chr2A | 95.657 | 1773 | 54 | 8 | 3314 | 5076 | 440076552 | 440074793 | 0.000000e+00 | 2826.0 |
35 | TraesCS3D01G355100 | chr2A | 95.635 | 1764 | 55 | 7 | 3314 | 5068 | 101856609 | 101854859 | 0.000000e+00 | 2811.0 |
36 | TraesCS3D01G355100 | chr2A | 91.667 | 228 | 19 | 0 | 1 | 228 | 753460737 | 753460964 | 4.940000e-82 | 316.0 |
37 | TraesCS3D01G355100 | chr2A | 78.632 | 117 | 20 | 4 | 346 | 460 | 602728607 | 602728494 | 1.180000e-08 | 73.1 |
38 | TraesCS3D01G355100 | chr2D | 95.601 | 1773 | 58 | 7 | 3314 | 5077 | 136425054 | 136426815 | 0.000000e+00 | 2824.0 |
39 | TraesCS3D01G355100 | chr2D | 93.895 | 344 | 11 | 1 | 4734 | 5077 | 180879744 | 180879411 | 2.110000e-140 | 510.0 |
40 | TraesCS3D01G355100 | chr2D | 97.122 | 139 | 4 | 0 | 3180 | 3318 | 226565458 | 226565596 | 1.420000e-57 | 235.0 |
41 | TraesCS3D01G355100 | chr2D | 95.833 | 144 | 6 | 0 | 3174 | 3317 | 463076576 | 463076719 | 5.120000e-57 | 233.0 |
42 | TraesCS3D01G355100 | chr5A | 95.774 | 1751 | 52 | 7 | 3314 | 5055 | 524722197 | 524723934 | 0.000000e+00 | 2804.0 |
43 | TraesCS3D01G355100 | chr5A | 93.792 | 902 | 32 | 8 | 4176 | 5074 | 366235694 | 366234814 | 0.000000e+00 | 1334.0 |
44 | TraesCS3D01G355100 | chr5A | 96.070 | 229 | 8 | 1 | 1 | 228 | 433557872 | 433558100 | 1.040000e-98 | 372.0 |
45 | TraesCS3D01G355100 | chr5A | 88.546 | 227 | 22 | 4 | 5 | 229 | 27235325 | 27235549 | 1.080000e-68 | 272.0 |
46 | TraesCS3D01G355100 | chr1A | 95.504 | 1757 | 57 | 7 | 3314 | 5061 | 477662439 | 477660696 | 0.000000e+00 | 2787.0 |
47 | TraesCS3D01G355100 | chr1A | 94.758 | 1774 | 71 | 8 | 3314 | 5078 | 341232484 | 341230724 | 0.000000e+00 | 2741.0 |
48 | TraesCS3D01G355100 | chr1A | 96.685 | 181 | 5 | 1 | 47 | 227 | 485337516 | 485337695 | 4.980000e-77 | 300.0 |
49 | TraesCS3D01G355100 | chr1A | 89.286 | 224 | 22 | 1 | 5 | 228 | 547885639 | 547885860 | 6.480000e-71 | 279.0 |
50 | TraesCS3D01G355100 | chr1A | 97.826 | 138 | 3 | 0 | 3180 | 3317 | 447068071 | 447067934 | 1.100000e-58 | 239.0 |
51 | TraesCS3D01G355100 | chr5D | 94.795 | 903 | 33 | 3 | 4176 | 5077 | 277243985 | 277243096 | 0.000000e+00 | 1395.0 |
52 | TraesCS3D01G355100 | chr6B | 88.338 | 343 | 37 | 3 | 4734 | 5076 | 422323491 | 422323152 | 7.930000e-110 | 409.0 |
53 | TraesCS3D01G355100 | chr6B | 92.116 | 241 | 9 | 1 | 4838 | 5078 | 597080489 | 597080719 | 1.760000e-86 | 331.0 |
54 | TraesCS3D01G355100 | chr6B | 97.826 | 138 | 3 | 0 | 3180 | 3317 | 415122823 | 415122686 | 1.100000e-58 | 239.0 |
55 | TraesCS3D01G355100 | chr6B | 87.500 | 88 | 10 | 1 | 377 | 464 | 6836398 | 6836312 | 5.420000e-17 | 100.0 |
56 | TraesCS3D01G355100 | chr6B | 87.931 | 58 | 6 | 1 | 8193 | 8249 | 554605268 | 554605325 | 5.490000e-07 | 67.6 |
57 | TraesCS3D01G355100 | chr7A | 97.817 | 229 | 4 | 1 | 1 | 228 | 94207636 | 94207864 | 2.220000e-105 | 394.0 |
58 | TraesCS3D01G355100 | chr7A | 97.797 | 227 | 4 | 1 | 3 | 228 | 94170384 | 94170610 | 2.870000e-104 | 390.0 |
59 | TraesCS3D01G355100 | chr5B | 95.133 | 226 | 11 | 0 | 1 | 226 | 543254228 | 543254003 | 2.910000e-94 | 357.0 |
60 | TraesCS3D01G355100 | chr5B | 87.773 | 229 | 26 | 2 | 1 | 228 | 447220943 | 447221170 | 5.050000e-67 | 267.0 |
61 | TraesCS3D01G355100 | chr2B | 92.920 | 226 | 16 | 0 | 1 | 226 | 222583000 | 222583225 | 6.350000e-86 | 329.0 |
62 | TraesCS3D01G355100 | chr2B | 97.826 | 138 | 3 | 0 | 3180 | 3317 | 236460081 | 236460218 | 1.100000e-58 | 239.0 |
63 | TraesCS3D01G355100 | chr2B | 82.000 | 200 | 31 | 2 | 347 | 543 | 699071381 | 699071184 | 1.890000e-36 | 165.0 |
64 | TraesCS3D01G355100 | chr6A | 91.593 | 226 | 19 | 0 | 1 | 226 | 74804169 | 74803944 | 6.390000e-81 | 313.0 |
65 | TraesCS3D01G355100 | chr6A | 97.826 | 138 | 3 | 0 | 3180 | 3317 | 379827950 | 379827813 | 1.100000e-58 | 239.0 |
66 | TraesCS3D01G355100 | chr6A | 84.545 | 220 | 33 | 1 | 10 | 228 | 141366711 | 141366492 | 5.160000e-52 | 217.0 |
67 | TraesCS3D01G355100 | chr6A | 88.889 | 144 | 13 | 3 | 88 | 228 | 595586952 | 595586809 | 3.150000e-39 | 174.0 |
68 | TraesCS3D01G355100 | chr6A | 89.394 | 66 | 6 | 1 | 8185 | 8249 | 19821512 | 19821577 | 1.960000e-11 | 82.4 |
69 | TraesCS3D01G355100 | chr7D | 88.444 | 225 | 26 | 0 | 5 | 229 | 69492180 | 69491956 | 1.080000e-68 | 272.0 |
70 | TraesCS3D01G355100 | chr7D | 97.826 | 138 | 3 | 0 | 3180 | 3317 | 578354746 | 578354883 | 1.100000e-58 | 239.0 |
71 | TraesCS3D01G355100 | chr7D | 89.873 | 79 | 8 | 0 | 382 | 460 | 213516667 | 213516589 | 1.510000e-17 | 102.0 |
72 | TraesCS3D01G355100 | chr6D | 88.261 | 230 | 22 | 5 | 1 | 227 | 387752253 | 387752480 | 3.900000e-68 | 270.0 |
73 | TraesCS3D01G355100 | chr1D | 87.946 | 224 | 27 | 0 | 4 | 227 | 62408383 | 62408160 | 1.820000e-66 | 265.0 |
74 | TraesCS3D01G355100 | chr1D | 97.101 | 138 | 4 | 0 | 3180 | 3317 | 37516218 | 37516081 | 5.120000e-57 | 233.0 |
75 | TraesCS3D01G355100 | chr1D | 85.116 | 215 | 31 | 1 | 1 | 214 | 208112611 | 208112825 | 1.430000e-52 | 219.0 |
76 | TraesCS3D01G355100 | chr1D | 77.707 | 314 | 55 | 12 | 5954 | 6261 | 379793852 | 379794156 | 2.430000e-40 | 178.0 |
77 | TraesCS3D01G355100 | chrUn | 97.826 | 138 | 3 | 0 | 3180 | 3317 | 468628672 | 468628535 | 1.100000e-58 | 239.0 |
78 | TraesCS3D01G355100 | chrUn | 97.101 | 138 | 4 | 0 | 3180 | 3317 | 87050723 | 87050586 | 5.120000e-57 | 233.0 |
79 | TraesCS3D01G355100 | chrUn | 97.101 | 138 | 4 | 0 | 3180 | 3317 | 377047393 | 377047256 | 5.120000e-57 | 233.0 |
80 | TraesCS3D01G355100 | chrUn | 97.101 | 138 | 4 | 0 | 3180 | 3317 | 419797159 | 419797022 | 5.120000e-57 | 233.0 |
81 | TraesCS3D01G355100 | chrUn | 97.101 | 138 | 4 | 0 | 3180 | 3317 | 435604198 | 435604061 | 5.120000e-57 | 233.0 |
82 | TraesCS3D01G355100 | chrUn | 97.101 | 138 | 4 | 0 | 3180 | 3317 | 442546761 | 442546898 | 5.120000e-57 | 233.0 |
83 | TraesCS3D01G355100 | chrUn | 96.403 | 139 | 5 | 0 | 3180 | 3318 | 340765879 | 340766017 | 6.620000e-56 | 230.0 |
84 | TraesCS3D01G355100 | chrUn | 96.403 | 139 | 5 | 0 | 3180 | 3318 | 340770943 | 340771081 | 6.620000e-56 | 230.0 |
85 | TraesCS3D01G355100 | chrUn | 96.377 | 138 | 5 | 0 | 3180 | 3317 | 1039250 | 1039113 | 2.380000e-55 | 228.0 |
86 | TraesCS3D01G355100 | chr4B | 97.826 | 138 | 3 | 0 | 3180 | 3317 | 68064497 | 68064634 | 1.100000e-58 | 239.0 |
87 | TraesCS3D01G355100 | chr4B | 81.746 | 126 | 21 | 2 | 371 | 494 | 60178468 | 60178593 | 4.190000e-18 | 104.0 |
88 | TraesCS3D01G355100 | chr4D | 97.101 | 138 | 4 | 0 | 3180 | 3317 | 83143623 | 83143760 | 5.120000e-57 | 233.0 |
89 | TraesCS3D01G355100 | chr4D | 97.101 | 138 | 4 | 0 | 3180 | 3317 | 93830109 | 93830246 | 5.120000e-57 | 233.0 |
90 | TraesCS3D01G355100 | chr7B | 89.744 | 78 | 8 | 0 | 382 | 459 | 188001362 | 188001439 | 5.420000e-17 | 100.0 |
91 | TraesCS3D01G355100 | chr7B | 87.143 | 70 | 8 | 1 | 382 | 451 | 734135194 | 734135126 | 2.540000e-10 | 78.7 |
92 | TraesCS3D01G355100 | chr1B | 82.243 | 107 | 17 | 2 | 354 | 460 | 115652131 | 115652235 | 3.260000e-14 | 91.6 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G355100 | chr3D | 466283737 | 466292218 | 8481 | True | 5552.000000 | 15664 | 91.159333 | 1 | 8482 | 3 | chr3D.!!$R4 | 8481 |
1 | TraesCS3D01G355100 | chr3D | 341506622 | 341508383 | 1761 | False | 2774.000000 | 2774 | 95.096000 | 3314 | 5077 | 1 | chr3D.!!$F2 | 1763 |
2 | TraesCS3D01G355100 | chr3A | 609476801 | 609484164 | 7363 | True | 1648.833333 | 4848 | 92.160833 | 231 | 8395 | 6 | chr3A.!!$R3 | 8164 |
3 | TraesCS3D01G355100 | chr3A | 308688532 | 308689281 | 749 | True | 1173.000000 | 1173 | 94.751000 | 4318 | 5077 | 1 | chr3A.!!$R2 | 759 |
4 | TraesCS3D01G355100 | chr3B | 275340347 | 275342096 | 1749 | False | 2819.000000 | 2819 | 95.739000 | 3314 | 5066 | 1 | chr3B.!!$F1 | 1752 |
5 | TraesCS3D01G355100 | chr3B | 620203012 | 620210111 | 7099 | True | 1236.375000 | 3408 | 92.384125 | 705 | 8482 | 8 | chr3B.!!$R2 | 7777 |
6 | TraesCS3D01G355100 | chr4A | 495111450 | 495113212 | 1762 | False | 2861.000000 | 2861 | 95.989000 | 3314 | 5074 | 1 | chr4A.!!$F3 | 1760 |
7 | TraesCS3D01G355100 | chr4A | 48292274 | 48294021 | 1747 | False | 2785.000000 | 2785 | 95.406000 | 3314 | 5067 | 1 | chr4A.!!$F1 | 1753 |
8 | TraesCS3D01G355100 | chr2A | 578390479 | 578392234 | 1755 | True | 2837.000000 | 2837 | 95.817000 | 3314 | 5073 | 1 | chr2A.!!$R3 | 1759 |
9 | TraesCS3D01G355100 | chr2A | 440074793 | 440076552 | 1759 | True | 2826.000000 | 2826 | 95.657000 | 3314 | 5076 | 1 | chr2A.!!$R2 | 1762 |
10 | TraesCS3D01G355100 | chr2A | 101854859 | 101856609 | 1750 | True | 2811.000000 | 2811 | 95.635000 | 3314 | 5068 | 1 | chr2A.!!$R1 | 1754 |
11 | TraesCS3D01G355100 | chr2D | 136425054 | 136426815 | 1761 | False | 2824.000000 | 2824 | 95.601000 | 3314 | 5077 | 1 | chr2D.!!$F1 | 1763 |
12 | TraesCS3D01G355100 | chr5A | 524722197 | 524723934 | 1737 | False | 2804.000000 | 2804 | 95.774000 | 3314 | 5055 | 1 | chr5A.!!$F3 | 1741 |
13 | TraesCS3D01G355100 | chr5A | 366234814 | 366235694 | 880 | True | 1334.000000 | 1334 | 93.792000 | 4176 | 5074 | 1 | chr5A.!!$R1 | 898 |
14 | TraesCS3D01G355100 | chr1A | 477660696 | 477662439 | 1743 | True | 2787.000000 | 2787 | 95.504000 | 3314 | 5061 | 1 | chr1A.!!$R3 | 1747 |
15 | TraesCS3D01G355100 | chr1A | 341230724 | 341232484 | 1760 | True | 2741.000000 | 2741 | 94.758000 | 3314 | 5078 | 1 | chr1A.!!$R1 | 1764 |
16 | TraesCS3D01G355100 | chr5D | 277243096 | 277243985 | 889 | True | 1395.000000 | 1395 | 94.795000 | 4176 | 5077 | 1 | chr5D.!!$R1 | 901 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
643 | 644 | 0.030235 | TTGTCGACCTCACGTGACTG | 59.970 | 55.0 | 15.76 | 11.41 | 32.64 | 3.51 | F |
645 | 646 | 0.309922 | GTCGACCTCACGTGACTGAA | 59.690 | 55.0 | 15.76 | 0.00 | 34.70 | 3.02 | F |
2021 | 3328 | 0.248843 | CAGAGGGTGTCTTCAGCTCC | 59.751 | 60.0 | 0.00 | 0.00 | 41.24 | 4.70 | F |
2082 | 3389 | 0.310854 | GAAACCTGCGTTGTTCCCAG | 59.689 | 55.0 | 0.00 | 0.00 | 30.72 | 4.45 | F |
2430 | 3741 | 0.512952 | GCAGACGTCAACGATTTGCT | 59.487 | 50.0 | 19.50 | 0.00 | 43.02 | 3.91 | F |
3267 | 4578 | 0.530870 | GGCATAACCCTCTCAGCGAC | 60.531 | 60.0 | 0.00 | 0.00 | 0.00 | 5.19 | F |
3268 | 4579 | 0.872021 | GCATAACCCTCTCAGCGACG | 60.872 | 60.0 | 0.00 | 0.00 | 0.00 | 5.12 | F |
4796 | 6127 | 0.326595 | TATTCAACGCAGGCCTCCAA | 59.673 | 50.0 | 0.00 | 0.00 | 0.00 | 3.53 | F |
4860 | 6191 | 1.001282 | AAGAGAGGTCGGGGTAGACT | 58.999 | 55.0 | 0.00 | 0.00 | 40.76 | 3.24 | F |
5478 | 6812 | 1.870064 | AATGGAAAATGGAGGCCCTG | 58.130 | 50.0 | 0.00 | 0.00 | 0.00 | 4.45 | F |
6335 | 7854 | 0.471191 | TCTGATGATTGGAGGCGCAT | 59.529 | 50.0 | 10.83 | 0.00 | 0.00 | 4.73 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1533 | 1551 | 0.539051 | GTCCACCTCCCACTGAGATG | 59.461 | 60.000 | 0.00 | 0.00 | 44.42 | 2.90 | R |
2080 | 3387 | 0.597568 | TTTTCCTTGTCGGCATGCTG | 59.402 | 50.000 | 21.02 | 21.02 | 0.00 | 4.41 | R |
3248 | 4559 | 0.530870 | GTCGCTGAGAGGGTTATGCC | 60.531 | 60.000 | 0.00 | 0.00 | 0.00 | 4.40 | R |
3606 | 4922 | 0.811915 | CTATCGCTATGTCCCCGAGG | 59.188 | 60.000 | 0.00 | 0.00 | 34.21 | 4.63 | R |
4151 | 5473 | 0.325933 | TGACCTCAGCCATCACCAAG | 59.674 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 | R |
4639 | 5970 | 0.459899 | TCAACATACGCATCTCCGCT | 59.540 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 | R |
5134 | 6468 | 2.226962 | AAGTCCTTGCCATGCAGATT | 57.773 | 45.000 | 0.00 | 0.00 | 40.61 | 2.40 | R |
5789 | 7308 | 1.000060 | GCTTGCCAAATCAACTGCAGA | 60.000 | 47.619 | 23.35 | 0.00 | 34.81 | 4.26 | R |
5862 | 7381 | 5.105269 | TCCTATTGTACATCGGCAAACAGTA | 60.105 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 | R |
7294 | 8848 | 0.116940 | ATGCCCCATGGTTCCTGTTT | 59.883 | 50.000 | 11.73 | 0.00 | 0.00 | 2.83 | R |
7519 | 9073 | 0.521867 | CACTTGCGGCATGATTCACG | 60.522 | 55.000 | 21.01 | 0.00 | 0.00 | 4.35 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
60 | 61 | 7.963981 | ACATCAAACTTGTATTACTCATGTCG | 58.036 | 34.615 | 0.00 | 0.00 | 0.00 | 4.35 |
61 | 62 | 7.817478 | ACATCAAACTTGTATTACTCATGTCGA | 59.183 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
62 | 63 | 8.820933 | CATCAAACTTGTATTACTCATGTCGAT | 58.179 | 33.333 | 0.00 | 0.00 | 0.00 | 3.59 |
63 | 64 | 8.407457 | TCAAACTTGTATTACTCATGTCGATC | 57.593 | 34.615 | 0.00 | 0.00 | 0.00 | 3.69 |
64 | 65 | 7.220108 | TCAAACTTGTATTACTCATGTCGATCG | 59.780 | 37.037 | 9.36 | 9.36 | 0.00 | 3.69 |
65 | 66 | 6.132791 | ACTTGTATTACTCATGTCGATCGT | 57.867 | 37.500 | 15.94 | 0.00 | 0.00 | 3.73 |
66 | 67 | 6.561614 | ACTTGTATTACTCATGTCGATCGTT | 58.438 | 36.000 | 15.94 | 0.00 | 0.00 | 3.85 |
67 | 68 | 6.691818 | ACTTGTATTACTCATGTCGATCGTTC | 59.308 | 38.462 | 15.94 | 10.24 | 0.00 | 3.95 |
68 | 69 | 5.202640 | TGTATTACTCATGTCGATCGTTCG | 58.797 | 41.667 | 15.94 | 9.59 | 46.87 | 3.95 |
69 | 70 | 2.101053 | TACTCATGTCGATCGTTCGC | 57.899 | 50.000 | 15.94 | 7.10 | 45.10 | 4.70 |
70 | 71 | 0.170339 | ACTCATGTCGATCGTTCGCA | 59.830 | 50.000 | 15.94 | 12.07 | 45.10 | 5.10 |
71 | 72 | 1.268265 | CTCATGTCGATCGTTCGCAA | 58.732 | 50.000 | 15.94 | 2.28 | 45.10 | 4.85 |
72 | 73 | 1.653609 | CTCATGTCGATCGTTCGCAAA | 59.346 | 47.619 | 15.94 | 0.00 | 45.10 | 3.68 |
73 | 74 | 2.062519 | TCATGTCGATCGTTCGCAAAA | 58.937 | 42.857 | 15.94 | 3.40 | 45.10 | 2.44 |
74 | 75 | 2.670905 | TCATGTCGATCGTTCGCAAAAT | 59.329 | 40.909 | 15.94 | 0.00 | 45.10 | 1.82 |
75 | 76 | 3.860536 | TCATGTCGATCGTTCGCAAAATA | 59.139 | 39.130 | 15.94 | 0.00 | 45.10 | 1.40 |
76 | 77 | 4.327627 | TCATGTCGATCGTTCGCAAAATAA | 59.672 | 37.500 | 15.94 | 0.00 | 45.10 | 1.40 |
77 | 78 | 4.648917 | TGTCGATCGTTCGCAAAATAAA | 57.351 | 36.364 | 15.94 | 0.00 | 45.10 | 1.40 |
78 | 79 | 4.634000 | TGTCGATCGTTCGCAAAATAAAG | 58.366 | 39.130 | 15.94 | 0.00 | 45.10 | 1.85 |
79 | 80 | 3.473902 | GTCGATCGTTCGCAAAATAAAGC | 59.526 | 43.478 | 15.94 | 0.00 | 45.10 | 3.51 |
87 | 88 | 2.241259 | GCAAAATAAAGCGAGCGACA | 57.759 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
88 | 89 | 2.580589 | GCAAAATAAAGCGAGCGACAA | 58.419 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
89 | 90 | 2.589841 | GCAAAATAAAGCGAGCGACAAG | 59.410 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
90 | 91 | 3.810373 | CAAAATAAAGCGAGCGACAAGT | 58.190 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
91 | 92 | 4.219033 | CAAAATAAAGCGAGCGACAAGTT | 58.781 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
92 | 93 | 5.379003 | CAAAATAAAGCGAGCGACAAGTTA | 58.621 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
93 | 94 | 4.842139 | AATAAAGCGAGCGACAAGTTAG | 57.158 | 40.909 | 0.00 | 0.00 | 0.00 | 2.34 |
94 | 95 | 0.790814 | AAAGCGAGCGACAAGTTAGC | 59.209 | 50.000 | 0.00 | 0.00 | 32.31 | 3.09 |
95 | 96 | 0.038159 | AAGCGAGCGACAAGTTAGCT | 60.038 | 50.000 | 0.00 | 0.00 | 43.04 | 3.32 |
96 | 97 | 0.734253 | AGCGAGCGACAAGTTAGCTG | 60.734 | 55.000 | 0.00 | 3.94 | 40.13 | 4.24 |
97 | 98 | 1.704582 | CGAGCGACAAGTTAGCTGC | 59.295 | 57.895 | 0.00 | 0.00 | 41.84 | 5.25 |
98 | 99 | 0.734253 | CGAGCGACAAGTTAGCTGCT | 60.734 | 55.000 | 7.57 | 7.57 | 41.84 | 4.24 |
99 | 100 | 1.433534 | GAGCGACAAGTTAGCTGCTT | 58.566 | 50.000 | 7.79 | 0.00 | 41.84 | 3.91 |
100 | 101 | 1.801178 | GAGCGACAAGTTAGCTGCTTT | 59.199 | 47.619 | 7.79 | 0.00 | 41.84 | 3.51 |
101 | 102 | 2.222027 | AGCGACAAGTTAGCTGCTTTT | 58.778 | 42.857 | 7.79 | 0.00 | 40.07 | 2.27 |
102 | 103 | 2.031682 | AGCGACAAGTTAGCTGCTTTTG | 60.032 | 45.455 | 7.79 | 12.81 | 40.07 | 2.44 |
103 | 104 | 2.918131 | GCGACAAGTTAGCTGCTTTTGG | 60.918 | 50.000 | 7.79 | 0.00 | 0.00 | 3.28 |
104 | 105 | 2.290641 | CGACAAGTTAGCTGCTTTTGGT | 59.709 | 45.455 | 7.79 | 0.09 | 0.00 | 3.67 |
105 | 106 | 3.607078 | CGACAAGTTAGCTGCTTTTGGTC | 60.607 | 47.826 | 7.79 | 9.00 | 0.00 | 4.02 |
106 | 107 | 2.290641 | ACAAGTTAGCTGCTTTTGGTCG | 59.709 | 45.455 | 7.79 | 0.00 | 0.00 | 4.79 |
107 | 108 | 2.256117 | AGTTAGCTGCTTTTGGTCGT | 57.744 | 45.000 | 7.79 | 0.00 | 0.00 | 4.34 |
108 | 109 | 3.396260 | AGTTAGCTGCTTTTGGTCGTA | 57.604 | 42.857 | 7.79 | 0.00 | 0.00 | 3.43 |
109 | 110 | 3.939066 | AGTTAGCTGCTTTTGGTCGTAT | 58.061 | 40.909 | 7.79 | 0.00 | 0.00 | 3.06 |
110 | 111 | 4.324267 | AGTTAGCTGCTTTTGGTCGTATT | 58.676 | 39.130 | 7.79 | 0.00 | 0.00 | 1.89 |
111 | 112 | 5.484715 | AGTTAGCTGCTTTTGGTCGTATTA | 58.515 | 37.500 | 7.79 | 0.00 | 0.00 | 0.98 |
112 | 113 | 5.935789 | AGTTAGCTGCTTTTGGTCGTATTAA | 59.064 | 36.000 | 7.79 | 0.00 | 0.00 | 1.40 |
113 | 114 | 6.598064 | AGTTAGCTGCTTTTGGTCGTATTAAT | 59.402 | 34.615 | 7.79 | 0.00 | 0.00 | 1.40 |
114 | 115 | 7.767198 | AGTTAGCTGCTTTTGGTCGTATTAATA | 59.233 | 33.333 | 7.79 | 0.00 | 0.00 | 0.98 |
115 | 116 | 6.995511 | AGCTGCTTTTGGTCGTATTAATAA | 57.004 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
116 | 117 | 7.568199 | AGCTGCTTTTGGTCGTATTAATAAT | 57.432 | 32.000 | 0.00 | 0.00 | 0.00 | 1.28 |
117 | 118 | 8.671384 | AGCTGCTTTTGGTCGTATTAATAATA | 57.329 | 30.769 | 0.00 | 0.00 | 0.00 | 0.98 |
118 | 119 | 8.774586 | AGCTGCTTTTGGTCGTATTAATAATAG | 58.225 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
119 | 120 | 8.015658 | GCTGCTTTTGGTCGTATTAATAATAGG | 58.984 | 37.037 | 6.42 | 6.42 | 0.00 | 2.57 |
120 | 121 | 9.268268 | CTGCTTTTGGTCGTATTAATAATAGGA | 57.732 | 33.333 | 10.34 | 10.34 | 36.29 | 2.94 |
137 | 138 | 6.749036 | AATAGGACTATGACTTGGTTAGGG | 57.251 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
138 | 139 | 4.076175 | AGGACTATGACTTGGTTAGGGT | 57.924 | 45.455 | 0.00 | 0.00 | 0.00 | 4.34 |
139 | 140 | 4.031611 | AGGACTATGACTTGGTTAGGGTC | 58.968 | 47.826 | 0.00 | 0.00 | 0.00 | 4.46 |
140 | 141 | 3.773119 | GGACTATGACTTGGTTAGGGTCA | 59.227 | 47.826 | 0.00 | 0.00 | 42.85 | 4.02 |
141 | 142 | 4.141914 | GGACTATGACTTGGTTAGGGTCAG | 60.142 | 50.000 | 0.00 | 0.00 | 42.13 | 3.51 |
142 | 143 | 3.775316 | ACTATGACTTGGTTAGGGTCAGG | 59.225 | 47.826 | 0.00 | 0.00 | 42.13 | 3.86 |
143 | 144 | 2.112279 | TGACTTGGTTAGGGTCAGGT | 57.888 | 50.000 | 0.00 | 0.00 | 35.44 | 4.00 |
144 | 145 | 1.975680 | TGACTTGGTTAGGGTCAGGTC | 59.024 | 52.381 | 0.00 | 0.00 | 39.46 | 3.85 |
145 | 146 | 1.278413 | GACTTGGTTAGGGTCAGGTCC | 59.722 | 57.143 | 0.00 | 0.00 | 35.02 | 4.46 |
146 | 147 | 1.132495 | ACTTGGTTAGGGTCAGGTCCT | 60.132 | 52.381 | 0.00 | 0.00 | 38.36 | 3.85 |
147 | 148 | 1.555533 | CTTGGTTAGGGTCAGGTCCTC | 59.444 | 57.143 | 0.00 | 0.00 | 35.92 | 3.71 |
148 | 149 | 0.252558 | TGGTTAGGGTCAGGTCCTCC | 60.253 | 60.000 | 0.00 | 0.00 | 35.92 | 4.30 |
149 | 150 | 0.252558 | GGTTAGGGTCAGGTCCTCCA | 60.253 | 60.000 | 0.00 | 0.00 | 35.92 | 3.86 |
150 | 151 | 1.196012 | GTTAGGGTCAGGTCCTCCAG | 58.804 | 60.000 | 0.00 | 0.00 | 35.92 | 3.86 |
151 | 152 | 1.089978 | TTAGGGTCAGGTCCTCCAGA | 58.910 | 55.000 | 0.00 | 0.00 | 35.92 | 3.86 |
152 | 153 | 1.089978 | TAGGGTCAGGTCCTCCAGAA | 58.910 | 55.000 | 0.00 | 0.00 | 35.92 | 3.02 |
153 | 154 | 0.252467 | AGGGTCAGGTCCTCCAGAAG | 60.252 | 60.000 | 0.00 | 0.00 | 35.89 | 2.85 |
154 | 155 | 0.545548 | GGGTCAGGTCCTCCAGAAGT | 60.546 | 60.000 | 0.00 | 0.00 | 35.89 | 3.01 |
155 | 156 | 1.353091 | GGTCAGGTCCTCCAGAAGTT | 58.647 | 55.000 | 0.00 | 0.00 | 35.89 | 2.66 |
156 | 157 | 1.700186 | GGTCAGGTCCTCCAGAAGTTT | 59.300 | 52.381 | 0.00 | 0.00 | 35.89 | 2.66 |
157 | 158 | 2.106684 | GGTCAGGTCCTCCAGAAGTTTT | 59.893 | 50.000 | 0.00 | 0.00 | 35.89 | 2.43 |
158 | 159 | 3.142174 | GTCAGGTCCTCCAGAAGTTTTG | 58.858 | 50.000 | 0.00 | 0.00 | 35.89 | 2.44 |
159 | 160 | 2.106511 | TCAGGTCCTCCAGAAGTTTTGG | 59.893 | 50.000 | 6.08 | 6.08 | 37.04 | 3.28 |
160 | 161 | 2.106511 | CAGGTCCTCCAGAAGTTTTGGA | 59.893 | 50.000 | 14.10 | 14.10 | 42.30 | 3.53 |
169 | 170 | 5.003804 | TCCAGAAGTTTTGGAGATAGTTGC | 58.996 | 41.667 | 11.02 | 0.00 | 39.74 | 4.17 |
170 | 171 | 5.006386 | CCAGAAGTTTTGGAGATAGTTGCT | 58.994 | 41.667 | 6.59 | 0.00 | 37.96 | 3.91 |
171 | 172 | 5.106396 | CCAGAAGTTTTGGAGATAGTTGCTG | 60.106 | 44.000 | 6.59 | 0.00 | 37.96 | 4.41 |
172 | 173 | 5.702670 | CAGAAGTTTTGGAGATAGTTGCTGA | 59.297 | 40.000 | 0.00 | 0.00 | 0.00 | 4.26 |
173 | 174 | 6.205464 | CAGAAGTTTTGGAGATAGTTGCTGAA | 59.795 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
174 | 175 | 6.429385 | AGAAGTTTTGGAGATAGTTGCTGAAG | 59.571 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
175 | 176 | 5.869579 | AGTTTTGGAGATAGTTGCTGAAGA | 58.130 | 37.500 | 0.00 | 0.00 | 0.00 | 2.87 |
176 | 177 | 6.479884 | AGTTTTGGAGATAGTTGCTGAAGAT | 58.520 | 36.000 | 0.00 | 0.00 | 0.00 | 2.40 |
177 | 178 | 6.944862 | AGTTTTGGAGATAGTTGCTGAAGATT | 59.055 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
178 | 179 | 6.748333 | TTTGGAGATAGTTGCTGAAGATTG | 57.252 | 37.500 | 0.00 | 0.00 | 0.00 | 2.67 |
179 | 180 | 5.426689 | TGGAGATAGTTGCTGAAGATTGT | 57.573 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
180 | 181 | 6.544928 | TGGAGATAGTTGCTGAAGATTGTA | 57.455 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
181 | 182 | 6.946340 | TGGAGATAGTTGCTGAAGATTGTAA | 58.054 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
182 | 183 | 7.568349 | TGGAGATAGTTGCTGAAGATTGTAAT | 58.432 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
183 | 184 | 7.496920 | TGGAGATAGTTGCTGAAGATTGTAATG | 59.503 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
184 | 185 | 7.712639 | GGAGATAGTTGCTGAAGATTGTAATGA | 59.287 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
185 | 186 | 9.270640 | GAGATAGTTGCTGAAGATTGTAATGAT | 57.729 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
189 | 190 | 8.798859 | AGTTGCTGAAGATTGTAATGATACTT | 57.201 | 30.769 | 0.00 | 0.00 | 32.98 | 2.24 |
190 | 191 | 9.236006 | AGTTGCTGAAGATTGTAATGATACTTT | 57.764 | 29.630 | 0.00 | 0.00 | 32.98 | 2.66 |
191 | 192 | 9.282247 | GTTGCTGAAGATTGTAATGATACTTTG | 57.718 | 33.333 | 0.00 | 0.00 | 32.98 | 2.77 |
192 | 193 | 8.791327 | TGCTGAAGATTGTAATGATACTTTGA | 57.209 | 30.769 | 0.00 | 0.00 | 32.98 | 2.69 |
193 | 194 | 9.230122 | TGCTGAAGATTGTAATGATACTTTGAA | 57.770 | 29.630 | 0.00 | 0.00 | 32.98 | 2.69 |
212 | 213 | 9.337396 | ACTTTGAATGAGTAATACAAGTGTTGA | 57.663 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
213 | 214 | 9.817365 | CTTTGAATGAGTAATACAAGTGTTGAG | 57.183 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
214 | 215 | 7.364522 | TGAATGAGTAATACAAGTGTTGAGC | 57.635 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
215 | 216 | 6.371548 | TGAATGAGTAATACAAGTGTTGAGCC | 59.628 | 38.462 | 0.00 | 0.00 | 0.00 | 4.70 |
216 | 217 | 4.575885 | TGAGTAATACAAGTGTTGAGCCC | 58.424 | 43.478 | 0.00 | 0.00 | 0.00 | 5.19 |
217 | 218 | 3.596214 | AGTAATACAAGTGTTGAGCCCG | 58.404 | 45.455 | 0.00 | 0.00 | 0.00 | 6.13 |
218 | 219 | 1.165270 | AATACAAGTGTTGAGCCCGC | 58.835 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
219 | 220 | 0.036164 | ATACAAGTGTTGAGCCCGCA | 59.964 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
220 | 221 | 0.179043 | TACAAGTGTTGAGCCCGCAA | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
221 | 222 | 1.034838 | ACAAGTGTTGAGCCCGCAAA | 61.035 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
222 | 223 | 0.102120 | CAAGTGTTGAGCCCGCAAAA | 59.898 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
223 | 224 | 0.820871 | AAGTGTTGAGCCCGCAAAAA | 59.179 | 45.000 | 0.00 | 0.00 | 0.00 | 1.94 |
264 | 265 | 1.909700 | TCATTGGTCAGAAGGGCAAC | 58.090 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
279 | 280 | 2.841215 | GGCAACCAAAACCCCTAAAAC | 58.159 | 47.619 | 0.00 | 0.00 | 0.00 | 2.43 |
330 | 331 | 1.135972 | CAAGAACGGAGGAAATGTGCG | 60.136 | 52.381 | 0.00 | 0.00 | 34.52 | 5.34 |
341 | 342 | 2.440501 | GAAATGTGCGCCTCAAATACG | 58.559 | 47.619 | 4.18 | 0.00 | 0.00 | 3.06 |
344 | 345 | 0.319986 | TGTGCGCCTCAAATACGTGA | 60.320 | 50.000 | 4.18 | 0.00 | 0.00 | 4.35 |
360 | 361 | 2.271800 | CGTGAGGACCTTGATAAGTGC | 58.728 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
363 | 364 | 2.846206 | TGAGGACCTTGATAAGTGCCAT | 59.154 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
366 | 367 | 3.780294 | AGGACCTTGATAAGTGCCATACA | 59.220 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
390 | 391 | 7.495934 | ACATAAGGTACAAGCATATGACAACTC | 59.504 | 37.037 | 6.97 | 0.00 | 0.00 | 3.01 |
396 | 397 | 2.540515 | AGCATATGACAACTCCGAACG | 58.459 | 47.619 | 6.97 | 0.00 | 0.00 | 3.95 |
402 | 403 | 3.392769 | TGACAACTCCGAACGTTTTTG | 57.607 | 42.857 | 0.46 | 4.33 | 0.00 | 2.44 |
463 | 464 | 2.788786 | CCAAACATGACAACTTTCGTGC | 59.211 | 45.455 | 0.00 | 0.00 | 36.15 | 5.34 |
466 | 467 | 1.003972 | ACATGACAACTTTCGTGCGTG | 60.004 | 47.619 | 0.00 | 0.00 | 36.15 | 5.34 |
468 | 469 | 0.927537 | TGACAACTTTCGTGCGTGAG | 59.072 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
492 | 493 | 7.496747 | AGCTTATTTTTAACAGAAACTTGCCA | 58.503 | 30.769 | 0.00 | 0.00 | 0.00 | 4.92 |
502 | 503 | 5.804639 | ACAGAAACTTGCCATATGTCACTA | 58.195 | 37.500 | 1.24 | 0.00 | 0.00 | 2.74 |
503 | 504 | 5.877012 | ACAGAAACTTGCCATATGTCACTAG | 59.123 | 40.000 | 1.24 | 0.48 | 0.00 | 2.57 |
515 | 516 | 7.443575 | GCCATATGTCACTAGAAATTGTCATCT | 59.556 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
532 | 533 | 6.887368 | TGTCATCTTTACGTGACTGAAATTG | 58.113 | 36.000 | 0.00 | 0.00 | 43.87 | 2.32 |
537 | 538 | 8.655970 | CATCTTTACGTGACTGAAATTGTCATA | 58.344 | 33.333 | 0.00 | 0.00 | 44.74 | 2.15 |
584 | 585 | 3.268330 | GCATCTCACATGTGACACTCAT | 58.732 | 45.455 | 24.56 | 8.70 | 35.46 | 2.90 |
585 | 586 | 3.309138 | GCATCTCACATGTGACACTCATC | 59.691 | 47.826 | 24.56 | 6.67 | 35.46 | 2.92 |
586 | 587 | 4.756502 | CATCTCACATGTGACACTCATCT | 58.243 | 43.478 | 24.56 | 0.00 | 35.46 | 2.90 |
587 | 588 | 4.446994 | TCTCACATGTGACACTCATCTC | 57.553 | 45.455 | 24.56 | 0.00 | 35.46 | 2.75 |
588 | 589 | 3.828451 | TCTCACATGTGACACTCATCTCA | 59.172 | 43.478 | 24.56 | 0.00 | 35.46 | 3.27 |
589 | 590 | 3.917988 | TCACATGTGACACTCATCTCAC | 58.082 | 45.455 | 24.56 | 0.00 | 37.83 | 3.51 |
594 | 595 | 3.656559 | TGTGACACTCATCTCACATGTG | 58.343 | 45.455 | 20.18 | 20.18 | 41.46 | 3.21 |
595 | 596 | 3.321682 | TGTGACACTCATCTCACATGTGA | 59.678 | 43.478 | 26.33 | 26.33 | 41.46 | 3.58 |
596 | 597 | 3.677121 | GTGACACTCATCTCACATGTGAC | 59.323 | 47.826 | 24.56 | 11.82 | 37.36 | 3.67 |
597 | 598 | 3.321682 | TGACACTCATCTCACATGTGACA | 59.678 | 43.478 | 24.56 | 15.56 | 35.46 | 3.58 |
598 | 599 | 3.657634 | ACACTCATCTCACATGTGACAC | 58.342 | 45.455 | 24.56 | 0.00 | 35.46 | 3.67 |
599 | 600 | 3.323115 | ACACTCATCTCACATGTGACACT | 59.677 | 43.478 | 24.56 | 9.13 | 35.46 | 3.55 |
600 | 601 | 4.524328 | ACACTCATCTCACATGTGACACTA | 59.476 | 41.667 | 24.56 | 10.67 | 35.46 | 2.74 |
601 | 602 | 5.011023 | ACACTCATCTCACATGTGACACTAA | 59.989 | 40.000 | 24.56 | 8.29 | 35.46 | 2.24 |
602 | 603 | 5.928264 | CACTCATCTCACATGTGACACTAAA | 59.072 | 40.000 | 24.56 | 7.45 | 35.46 | 1.85 |
603 | 604 | 6.424812 | CACTCATCTCACATGTGACACTAAAA | 59.575 | 38.462 | 24.56 | 1.83 | 35.46 | 1.52 |
604 | 605 | 7.118825 | CACTCATCTCACATGTGACACTAAAAT | 59.881 | 37.037 | 24.56 | 6.89 | 35.46 | 1.82 |
605 | 606 | 7.663081 | ACTCATCTCACATGTGACACTAAAATT | 59.337 | 33.333 | 24.56 | 1.31 | 35.46 | 1.82 |
606 | 607 | 7.809665 | TCATCTCACATGTGACACTAAAATTG | 58.190 | 34.615 | 24.56 | 10.83 | 35.46 | 2.32 |
607 | 608 | 6.000891 | TCTCACATGTGACACTAAAATTGC | 57.999 | 37.500 | 24.56 | 0.00 | 35.46 | 3.56 |
608 | 609 | 5.048782 | TCTCACATGTGACACTAAAATTGCC | 60.049 | 40.000 | 24.56 | 0.00 | 35.46 | 4.52 |
609 | 610 | 3.913763 | CACATGTGACACTAAAATTGCCG | 59.086 | 43.478 | 21.64 | 0.00 | 0.00 | 5.69 |
610 | 611 | 3.568007 | ACATGTGACACTAAAATTGCCGT | 59.432 | 39.130 | 7.20 | 0.00 | 0.00 | 5.68 |
611 | 612 | 4.757657 | ACATGTGACACTAAAATTGCCGTA | 59.242 | 37.500 | 7.20 | 0.00 | 0.00 | 4.02 |
612 | 613 | 4.735662 | TGTGACACTAAAATTGCCGTAC | 57.264 | 40.909 | 7.20 | 0.00 | 0.00 | 3.67 |
613 | 614 | 3.184783 | TGTGACACTAAAATTGCCGTACG | 59.815 | 43.478 | 8.69 | 8.69 | 0.00 | 3.67 |
614 | 615 | 3.184986 | GTGACACTAAAATTGCCGTACGT | 59.815 | 43.478 | 15.21 | 0.00 | 0.00 | 3.57 |
615 | 616 | 3.429543 | TGACACTAAAATTGCCGTACGTC | 59.570 | 43.478 | 15.21 | 0.71 | 0.00 | 4.34 |
616 | 617 | 3.391965 | ACACTAAAATTGCCGTACGTCA | 58.608 | 40.909 | 15.21 | 4.24 | 0.00 | 4.35 |
617 | 618 | 3.184986 | ACACTAAAATTGCCGTACGTCAC | 59.815 | 43.478 | 15.21 | 3.86 | 0.00 | 3.67 |
618 | 619 | 3.430895 | CACTAAAATTGCCGTACGTCACT | 59.569 | 43.478 | 15.21 | 0.00 | 0.00 | 3.41 |
619 | 620 | 2.961522 | AAAATTGCCGTACGTCACTG | 57.038 | 45.000 | 15.21 | 0.00 | 0.00 | 3.66 |
620 | 621 | 1.153353 | AAATTGCCGTACGTCACTGG | 58.847 | 50.000 | 15.21 | 0.00 | 0.00 | 4.00 |
621 | 622 | 0.319083 | AATTGCCGTACGTCACTGGA | 59.681 | 50.000 | 15.21 | 0.00 | 0.00 | 3.86 |
622 | 623 | 0.319083 | ATTGCCGTACGTCACTGGAA | 59.681 | 50.000 | 15.21 | 6.20 | 0.00 | 3.53 |
623 | 624 | 0.104487 | TTGCCGTACGTCACTGGAAA | 59.896 | 50.000 | 15.21 | 0.00 | 0.00 | 3.13 |
624 | 625 | 0.319083 | TGCCGTACGTCACTGGAAAT | 59.681 | 50.000 | 15.21 | 0.00 | 0.00 | 2.17 |
625 | 626 | 1.270412 | TGCCGTACGTCACTGGAAATT | 60.270 | 47.619 | 15.21 | 0.00 | 0.00 | 1.82 |
626 | 627 | 1.127951 | GCCGTACGTCACTGGAAATTG | 59.872 | 52.381 | 15.21 | 0.00 | 0.00 | 2.32 |
627 | 628 | 2.409975 | CCGTACGTCACTGGAAATTGT | 58.590 | 47.619 | 15.21 | 0.00 | 0.00 | 2.71 |
628 | 629 | 2.410730 | CCGTACGTCACTGGAAATTGTC | 59.589 | 50.000 | 15.21 | 0.00 | 0.00 | 3.18 |
629 | 630 | 2.090041 | CGTACGTCACTGGAAATTGTCG | 59.910 | 50.000 | 7.22 | 0.00 | 0.00 | 4.35 |
630 | 631 | 2.519377 | ACGTCACTGGAAATTGTCGA | 57.481 | 45.000 | 0.00 | 0.00 | 0.00 | 4.20 |
631 | 632 | 2.132762 | ACGTCACTGGAAATTGTCGAC | 58.867 | 47.619 | 9.11 | 9.11 | 0.00 | 4.20 |
632 | 633 | 1.459592 | CGTCACTGGAAATTGTCGACC | 59.540 | 52.381 | 14.12 | 0.00 | 0.00 | 4.79 |
633 | 634 | 2.767505 | GTCACTGGAAATTGTCGACCT | 58.232 | 47.619 | 14.12 | 0.00 | 0.00 | 3.85 |
634 | 635 | 2.737252 | GTCACTGGAAATTGTCGACCTC | 59.263 | 50.000 | 14.12 | 4.39 | 0.00 | 3.85 |
635 | 636 | 2.367241 | TCACTGGAAATTGTCGACCTCA | 59.633 | 45.455 | 14.12 | 0.00 | 0.00 | 3.86 |
636 | 637 | 2.480419 | CACTGGAAATTGTCGACCTCAC | 59.520 | 50.000 | 14.12 | 0.84 | 0.00 | 3.51 |
637 | 638 | 1.726791 | CTGGAAATTGTCGACCTCACG | 59.273 | 52.381 | 14.12 | 0.00 | 0.00 | 4.35 |
638 | 639 | 1.069513 | TGGAAATTGTCGACCTCACGT | 59.930 | 47.619 | 14.12 | 0.00 | 34.70 | 4.49 |
639 | 640 | 1.459592 | GGAAATTGTCGACCTCACGTG | 59.540 | 52.381 | 14.12 | 9.94 | 34.70 | 4.49 |
640 | 641 | 2.400399 | GAAATTGTCGACCTCACGTGA | 58.600 | 47.619 | 18.88 | 18.88 | 34.70 | 4.35 |
641 | 642 | 1.779569 | AATTGTCGACCTCACGTGAC | 58.220 | 50.000 | 15.76 | 4.90 | 34.70 | 3.67 |
642 | 643 | 0.959553 | ATTGTCGACCTCACGTGACT | 59.040 | 50.000 | 15.76 | 1.88 | 32.64 | 3.41 |
643 | 644 | 0.030235 | TTGTCGACCTCACGTGACTG | 59.970 | 55.000 | 15.76 | 11.41 | 32.64 | 3.51 |
644 | 645 | 0.816421 | TGTCGACCTCACGTGACTGA | 60.816 | 55.000 | 15.76 | 7.15 | 32.64 | 3.41 |
645 | 646 | 0.309922 | GTCGACCTCACGTGACTGAA | 59.690 | 55.000 | 15.76 | 0.00 | 34.70 | 3.02 |
646 | 647 | 1.026584 | TCGACCTCACGTGACTGAAA | 58.973 | 50.000 | 15.76 | 0.00 | 34.70 | 2.69 |
647 | 648 | 1.611977 | TCGACCTCACGTGACTGAAAT | 59.388 | 47.619 | 15.76 | 0.00 | 34.70 | 2.17 |
648 | 649 | 2.035449 | TCGACCTCACGTGACTGAAATT | 59.965 | 45.455 | 15.76 | 0.00 | 34.70 | 1.82 |
649 | 650 | 3.253921 | TCGACCTCACGTGACTGAAATTA | 59.746 | 43.478 | 15.76 | 0.00 | 34.70 | 1.40 |
650 | 651 | 4.082408 | TCGACCTCACGTGACTGAAATTAT | 60.082 | 41.667 | 15.76 | 0.00 | 34.70 | 1.28 |
651 | 652 | 4.265556 | CGACCTCACGTGACTGAAATTATC | 59.734 | 45.833 | 15.76 | 0.85 | 0.00 | 1.75 |
652 | 653 | 5.147330 | ACCTCACGTGACTGAAATTATCA | 57.853 | 39.130 | 15.76 | 0.00 | 36.38 | 2.15 |
653 | 654 | 5.734720 | ACCTCACGTGACTGAAATTATCAT | 58.265 | 37.500 | 15.76 | 0.00 | 37.44 | 2.45 |
654 | 655 | 6.873997 | ACCTCACGTGACTGAAATTATCATA | 58.126 | 36.000 | 15.76 | 0.00 | 37.44 | 2.15 |
655 | 656 | 7.327975 | ACCTCACGTGACTGAAATTATCATAA | 58.672 | 34.615 | 15.76 | 0.00 | 37.44 | 1.90 |
656 | 657 | 7.822334 | ACCTCACGTGACTGAAATTATCATAAA | 59.178 | 33.333 | 15.76 | 0.00 | 37.44 | 1.40 |
657 | 658 | 8.664798 | CCTCACGTGACTGAAATTATCATAAAA | 58.335 | 33.333 | 15.76 | 0.00 | 37.44 | 1.52 |
677 | 678 | 4.657436 | AAAACGTAGAACCAAAATGCCA | 57.343 | 36.364 | 0.00 | 0.00 | 0.00 | 4.92 |
678 | 679 | 4.864704 | AAACGTAGAACCAAAATGCCAT | 57.135 | 36.364 | 0.00 | 0.00 | 0.00 | 4.40 |
679 | 680 | 3.848272 | ACGTAGAACCAAAATGCCATG | 57.152 | 42.857 | 0.00 | 0.00 | 0.00 | 3.66 |
680 | 681 | 2.094752 | ACGTAGAACCAAAATGCCATGC | 60.095 | 45.455 | 0.00 | 0.00 | 0.00 | 4.06 |
681 | 682 | 2.094803 | CGTAGAACCAAAATGCCATGCA | 60.095 | 45.455 | 0.00 | 0.00 | 44.86 | 3.96 |
690 | 691 | 4.324471 | TGCCATGCATCTGGTGAC | 57.676 | 55.556 | 8.13 | 0.00 | 38.63 | 3.67 |
691 | 692 | 1.379531 | TGCCATGCATCTGGTGACA | 59.620 | 52.632 | 8.13 | 0.00 | 38.63 | 3.58 |
692 | 693 | 0.961857 | TGCCATGCATCTGGTGACAC | 60.962 | 55.000 | 8.13 | 0.00 | 38.63 | 3.67 |
693 | 694 | 0.679002 | GCCATGCATCTGGTGACACT | 60.679 | 55.000 | 8.13 | 0.00 | 38.63 | 3.55 |
694 | 695 | 1.830279 | CCATGCATCTGGTGACACTT | 58.170 | 50.000 | 5.39 | 0.00 | 35.60 | 3.16 |
695 | 696 | 2.940971 | GCCATGCATCTGGTGACACTTA | 60.941 | 50.000 | 8.13 | 0.00 | 38.63 | 2.24 |
698 | 699 | 3.979101 | TGCATCTGGTGACACTTATCA | 57.021 | 42.857 | 5.39 | 0.00 | 35.60 | 2.15 |
1373 | 1386 | 2.295602 | GGCCCCTGTCTTCCGGTTA | 61.296 | 63.158 | 0.00 | 0.00 | 0.00 | 2.85 |
1533 | 1551 | 5.645497 | AGCTCAATCAGTCAATCTTGGTAAC | 59.355 | 40.000 | 0.00 | 0.00 | 0.00 | 2.50 |
1600 | 1618 | 1.445238 | GACGAGTGTCCTGCTCTGC | 60.445 | 63.158 | 0.00 | 0.00 | 39.30 | 4.26 |
1696 | 1714 | 6.056428 | ACATAGAAGTCCACAAAAACGAAC | 57.944 | 37.500 | 0.00 | 0.00 | 0.00 | 3.95 |
1700 | 1718 | 3.708563 | AGTCCACAAAAACGAACATGG | 57.291 | 42.857 | 0.00 | 0.00 | 0.00 | 3.66 |
1845 | 2014 | 7.986889 | ACCATCTTTAACTTGCACAAAGAATTT | 59.013 | 29.630 | 13.06 | 0.00 | 40.58 | 1.82 |
1852 | 2021 | 9.906660 | TTAACTTGCACAAAGAATTTATAGTGG | 57.093 | 29.630 | 0.00 | 0.00 | 35.03 | 4.00 |
1872 | 2041 | 3.894427 | TGGCCAAATGTAACACATCAGTT | 59.106 | 39.130 | 0.61 | 0.00 | 37.97 | 3.16 |
1967 | 2144 | 5.007234 | TCTGTTCACGACATTTTGGTAGTTG | 59.993 | 40.000 | 0.00 | 0.00 | 37.69 | 3.16 |
2021 | 3328 | 0.248843 | CAGAGGGTGTCTTCAGCTCC | 59.751 | 60.000 | 0.00 | 0.00 | 41.24 | 4.70 |
2080 | 3387 | 0.822121 | AGGAAACCTGCGTTGTTCCC | 60.822 | 55.000 | 5.66 | 0.00 | 31.60 | 3.97 |
2081 | 3388 | 1.104577 | GGAAACCTGCGTTGTTCCCA | 61.105 | 55.000 | 0.00 | 0.00 | 30.72 | 4.37 |
2082 | 3389 | 0.310854 | GAAACCTGCGTTGTTCCCAG | 59.689 | 55.000 | 0.00 | 0.00 | 30.72 | 4.45 |
2084 | 3391 | 2.594303 | CCTGCGTTGTTCCCAGCA | 60.594 | 61.111 | 0.00 | 0.00 | 38.03 | 4.41 |
2085 | 3392 | 1.973281 | CCTGCGTTGTTCCCAGCAT | 60.973 | 57.895 | 0.00 | 0.00 | 39.02 | 3.79 |
2086 | 3393 | 1.210931 | CTGCGTTGTTCCCAGCATG | 59.789 | 57.895 | 0.00 | 0.00 | 39.02 | 4.06 |
2087 | 3394 | 2.126346 | GCGTTGTTCCCAGCATGC | 60.126 | 61.111 | 10.51 | 10.51 | 31.97 | 4.06 |
2088 | 3395 | 2.568090 | CGTTGTTCCCAGCATGCC | 59.432 | 61.111 | 15.66 | 0.00 | 31.97 | 4.40 |
2089 | 3396 | 2.568090 | GTTGTTCCCAGCATGCCG | 59.432 | 61.111 | 15.66 | 3.33 | 31.97 | 5.69 |
2109 | 3416 | 3.300009 | CGACAAGGAAAAACACAGCATC | 58.700 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
2158 | 3465 | 5.723672 | TGAAGGATGTCGGAAGGATATAC | 57.276 | 43.478 | 0.00 | 0.00 | 0.00 | 1.47 |
2196 | 3504 | 7.556275 | TCATAAAGGGGAGCACAATACTAAAAG | 59.444 | 37.037 | 0.00 | 0.00 | 0.00 | 2.27 |
2202 | 3510 | 6.015772 | GGGGAGCACAATACTAAAAGACAAAA | 60.016 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
2378 | 3689 | 1.079405 | CACCAGTACCGCCAACGAT | 60.079 | 57.895 | 0.00 | 0.00 | 43.93 | 3.73 |
2430 | 3741 | 0.512952 | GCAGACGTCAACGATTTGCT | 59.487 | 50.000 | 19.50 | 0.00 | 43.02 | 3.91 |
2433 | 3744 | 2.413112 | CAGACGTCAACGATTTGCTGAT | 59.587 | 45.455 | 19.50 | 0.00 | 43.02 | 2.90 |
2515 | 3826 | 4.832266 | TCACCATCCTTAACTTGCACAAAT | 59.168 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
2572 | 3883 | 8.163408 | TCATTATATCATTAAACCCCTGGTCTG | 58.837 | 37.037 | 0.00 | 0.00 | 33.12 | 3.51 |
2683 | 3994 | 3.578688 | CACCATTTTAAGAAGCCTGTGC | 58.421 | 45.455 | 0.00 | 0.00 | 37.95 | 4.57 |
2756 | 4067 | 6.251471 | ACCAATTTCTTGAAGGATGTCAGAT | 58.749 | 36.000 | 0.00 | 0.00 | 34.04 | 2.90 |
3020 | 4331 | 2.434359 | GGGTGTCGCTAGTGGCAC | 60.434 | 66.667 | 28.71 | 28.71 | 41.91 | 5.01 |
3088 | 4399 | 7.656137 | AGTGGTGTGTGTTATATCCGATTATTC | 59.344 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
3090 | 4401 | 7.988028 | TGGTGTGTGTTATATCCGATTATTCAA | 59.012 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
3131 | 4442 | 8.175431 | TCGTAAGGGAAGGATATATAACTCCTT | 58.825 | 37.037 | 14.84 | 14.84 | 45.74 | 3.36 |
3205 | 4516 | 2.645802 | TGGTGAGCCAACGTAAAAACT | 58.354 | 42.857 | 0.00 | 0.00 | 42.83 | 2.66 |
3206 | 4517 | 2.614983 | TGGTGAGCCAACGTAAAAACTC | 59.385 | 45.455 | 0.00 | 0.00 | 42.83 | 3.01 |
3207 | 4518 | 2.614983 | GGTGAGCCAACGTAAAAACTCA | 59.385 | 45.455 | 0.00 | 0.00 | 34.09 | 3.41 |
3208 | 4519 | 3.303791 | GGTGAGCCAACGTAAAAACTCAG | 60.304 | 47.826 | 6.86 | 0.00 | 35.02 | 3.35 |
3209 | 4520 | 2.289547 | TGAGCCAACGTAAAAACTCAGC | 59.710 | 45.455 | 0.00 | 0.00 | 31.01 | 4.26 |
3210 | 4521 | 1.607148 | AGCCAACGTAAAAACTCAGCC | 59.393 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
3211 | 4522 | 1.335496 | GCCAACGTAAAAACTCAGCCA | 59.665 | 47.619 | 0.00 | 0.00 | 0.00 | 4.75 |
3212 | 4523 | 2.857104 | GCCAACGTAAAAACTCAGCCAC | 60.857 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
3213 | 4524 | 2.616842 | CCAACGTAAAAACTCAGCCACT | 59.383 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
3214 | 4525 | 3.303791 | CCAACGTAAAAACTCAGCCACTC | 60.304 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
3215 | 4526 | 3.470645 | ACGTAAAAACTCAGCCACTCT | 57.529 | 42.857 | 0.00 | 0.00 | 0.00 | 3.24 |
3216 | 4527 | 3.805207 | ACGTAAAAACTCAGCCACTCTT | 58.195 | 40.909 | 0.00 | 0.00 | 0.00 | 2.85 |
3217 | 4528 | 4.952460 | ACGTAAAAACTCAGCCACTCTTA | 58.048 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
3218 | 4529 | 5.548406 | ACGTAAAAACTCAGCCACTCTTAT | 58.452 | 37.500 | 0.00 | 0.00 | 0.00 | 1.73 |
3219 | 4530 | 5.408604 | ACGTAAAAACTCAGCCACTCTTATG | 59.591 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
3220 | 4531 | 5.163854 | CGTAAAAACTCAGCCACTCTTATGG | 60.164 | 44.000 | 0.00 | 0.00 | 43.26 | 2.74 |
3221 | 4532 | 4.640771 | AAAACTCAGCCACTCTTATGGA | 57.359 | 40.909 | 0.00 | 0.00 | 43.02 | 3.41 |
3222 | 4533 | 3.902881 | AACTCAGCCACTCTTATGGAG | 57.097 | 47.619 | 0.00 | 0.00 | 43.02 | 3.86 |
3223 | 4534 | 3.107402 | ACTCAGCCACTCTTATGGAGA | 57.893 | 47.619 | 0.00 | 0.00 | 44.45 | 3.71 |
3224 | 4535 | 3.652055 | ACTCAGCCACTCTTATGGAGAT | 58.348 | 45.455 | 0.00 | 0.00 | 44.45 | 2.75 |
3225 | 4536 | 3.387374 | ACTCAGCCACTCTTATGGAGATG | 59.613 | 47.826 | 0.00 | 0.00 | 44.45 | 2.90 |
3226 | 4537 | 3.640498 | CTCAGCCACTCTTATGGAGATGA | 59.360 | 47.826 | 0.00 | 0.00 | 44.45 | 2.92 |
3227 | 4538 | 4.033009 | TCAGCCACTCTTATGGAGATGAA | 58.967 | 43.478 | 0.00 | 0.00 | 44.45 | 2.57 |
3228 | 4539 | 4.471025 | TCAGCCACTCTTATGGAGATGAAA | 59.529 | 41.667 | 0.00 | 0.00 | 44.45 | 2.69 |
3229 | 4540 | 4.574013 | CAGCCACTCTTATGGAGATGAAAC | 59.426 | 45.833 | 0.00 | 0.00 | 44.45 | 2.78 |
3230 | 4541 | 3.879892 | GCCACTCTTATGGAGATGAAACC | 59.120 | 47.826 | 0.00 | 0.00 | 44.45 | 3.27 |
3231 | 4542 | 4.455606 | CCACTCTTATGGAGATGAAACCC | 58.544 | 47.826 | 4.83 | 0.00 | 44.45 | 4.11 |
3232 | 4543 | 4.080356 | CCACTCTTATGGAGATGAAACCCA | 60.080 | 45.833 | 4.83 | 0.00 | 44.45 | 4.51 |
3233 | 4544 | 5.500234 | CACTCTTATGGAGATGAAACCCAA | 58.500 | 41.667 | 4.83 | 0.00 | 44.45 | 4.12 |
3234 | 4545 | 5.945784 | CACTCTTATGGAGATGAAACCCAAA | 59.054 | 40.000 | 4.83 | 0.00 | 44.45 | 3.28 |
3235 | 4546 | 6.434028 | CACTCTTATGGAGATGAAACCCAAAA | 59.566 | 38.462 | 4.83 | 0.00 | 44.45 | 2.44 |
3236 | 4547 | 6.660949 | ACTCTTATGGAGATGAAACCCAAAAG | 59.339 | 38.462 | 4.83 | 0.00 | 44.45 | 2.27 |
3237 | 4548 | 6.789268 | TCTTATGGAGATGAAACCCAAAAGA | 58.211 | 36.000 | 0.00 | 0.00 | 33.15 | 2.52 |
3238 | 4549 | 7.413446 | TCTTATGGAGATGAAACCCAAAAGAT | 58.587 | 34.615 | 0.00 | 0.00 | 33.15 | 2.40 |
3239 | 4550 | 7.895429 | TCTTATGGAGATGAAACCCAAAAGATT | 59.105 | 33.333 | 0.00 | 0.00 | 33.15 | 2.40 |
3240 | 4551 | 6.940430 | ATGGAGATGAAACCCAAAAGATTT | 57.060 | 33.333 | 0.00 | 0.00 | 33.15 | 2.17 |
3241 | 4552 | 6.745794 | TGGAGATGAAACCCAAAAGATTTT | 57.254 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
3242 | 4553 | 6.758254 | TGGAGATGAAACCCAAAAGATTTTC | 58.242 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3243 | 4554 | 5.863935 | GGAGATGAAACCCAAAAGATTTTCG | 59.136 | 40.000 | 0.00 | 0.00 | 31.76 | 3.46 |
3244 | 4555 | 6.405278 | AGATGAAACCCAAAAGATTTTCGT | 57.595 | 33.333 | 0.00 | 0.00 | 31.76 | 3.85 |
3245 | 4556 | 6.816136 | AGATGAAACCCAAAAGATTTTCGTT | 58.184 | 32.000 | 0.00 | 0.00 | 31.76 | 3.85 |
3246 | 4557 | 6.701400 | AGATGAAACCCAAAAGATTTTCGTTG | 59.299 | 34.615 | 0.00 | 0.00 | 31.76 | 4.10 |
3247 | 4558 | 5.112686 | TGAAACCCAAAAGATTTTCGTTGG | 58.887 | 37.500 | 0.00 | 0.00 | 36.67 | 3.77 |
3249 | 4560 | 3.038788 | CCCAAAAGATTTTCGTTGGGG | 57.961 | 47.619 | 17.61 | 11.08 | 45.27 | 4.96 |
3250 | 4561 | 2.412870 | CCAAAAGATTTTCGTTGGGGC | 58.587 | 47.619 | 0.00 | 0.00 | 34.69 | 5.80 |
3251 | 4562 | 2.224161 | CCAAAAGATTTTCGTTGGGGCA | 60.224 | 45.455 | 0.00 | 0.00 | 34.69 | 5.36 |
3252 | 4563 | 3.556843 | CCAAAAGATTTTCGTTGGGGCAT | 60.557 | 43.478 | 0.00 | 0.00 | 34.69 | 4.40 |
3253 | 4564 | 4.322349 | CCAAAAGATTTTCGTTGGGGCATA | 60.322 | 41.667 | 0.00 | 0.00 | 34.69 | 3.14 |
3254 | 4565 | 5.233988 | CAAAAGATTTTCGTTGGGGCATAA | 58.766 | 37.500 | 0.00 | 0.00 | 0.00 | 1.90 |
3255 | 4566 | 4.450082 | AAGATTTTCGTTGGGGCATAAC | 57.550 | 40.909 | 0.00 | 0.00 | 0.00 | 1.89 |
3256 | 4567 | 2.758423 | AGATTTTCGTTGGGGCATAACC | 59.242 | 45.455 | 0.00 | 0.00 | 37.93 | 2.85 |
3265 | 4576 | 4.445699 | GGCATAACCCTCTCAGCG | 57.554 | 61.111 | 0.00 | 0.00 | 0.00 | 5.18 |
3266 | 4577 | 1.823295 | GGCATAACCCTCTCAGCGA | 59.177 | 57.895 | 0.00 | 0.00 | 0.00 | 4.93 |
3267 | 4578 | 0.530870 | GGCATAACCCTCTCAGCGAC | 60.531 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
3268 | 4579 | 0.872021 | GCATAACCCTCTCAGCGACG | 60.872 | 60.000 | 0.00 | 0.00 | 0.00 | 5.12 |
3269 | 4580 | 0.872021 | CATAACCCTCTCAGCGACGC | 60.872 | 60.000 | 13.03 | 13.03 | 0.00 | 5.19 |
3270 | 4581 | 2.337749 | ATAACCCTCTCAGCGACGCG | 62.338 | 60.000 | 15.18 | 3.53 | 0.00 | 6.01 |
3282 | 4593 | 3.849953 | GACGCGCCACATCGGAAC | 61.850 | 66.667 | 5.73 | 0.00 | 36.56 | 3.62 |
3295 | 4606 | 4.653888 | GGAACCCGGGTGTGGTGG | 62.654 | 72.222 | 31.05 | 0.00 | 35.88 | 4.61 |
3299 | 4610 | 4.904590 | CCCGGGTGTGGTGGCAAA | 62.905 | 66.667 | 14.18 | 0.00 | 0.00 | 3.68 |
3300 | 4611 | 2.600173 | CCGGGTGTGGTGGCAAAT | 60.600 | 61.111 | 0.00 | 0.00 | 0.00 | 2.32 |
3301 | 4612 | 2.650196 | CGGGTGTGGTGGCAAATG | 59.350 | 61.111 | 0.00 | 0.00 | 0.00 | 2.32 |
3302 | 4613 | 2.929903 | CGGGTGTGGTGGCAAATGG | 61.930 | 63.158 | 0.00 | 0.00 | 0.00 | 3.16 |
3303 | 4614 | 2.582493 | GGGTGTGGTGGCAAATGGG | 61.582 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
3304 | 4615 | 2.343387 | GTGTGGTGGCAAATGGGC | 59.657 | 61.111 | 0.00 | 0.00 | 43.73 | 5.36 |
3311 | 4622 | 2.981302 | GGCAAATGGGCAAGGGAC | 59.019 | 61.111 | 0.00 | 0.00 | 42.77 | 4.46 |
3312 | 4623 | 2.573340 | GCAAATGGGCAAGGGACG | 59.427 | 61.111 | 0.00 | 0.00 | 0.00 | 4.79 |
3378 | 4689 | 1.219124 | GCATCAAGGACGGAGCAGA | 59.781 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
3384 | 4695 | 2.047179 | GGACGGAGCAGACCAACC | 60.047 | 66.667 | 0.00 | 0.00 | 0.00 | 3.77 |
3423 | 4738 | 1.717032 | AGCATAGATGGCGGGAGTAA | 58.283 | 50.000 | 0.00 | 0.00 | 36.08 | 2.24 |
3514 | 4829 | 3.593551 | ATGCGTTTTGTGCGGCGAG | 62.594 | 57.895 | 12.98 | 0.00 | 34.24 | 5.03 |
3525 | 4840 | 3.827898 | CGGCGAGTCCAGGAGTCC | 61.828 | 72.222 | 17.53 | 0.00 | 34.01 | 3.85 |
3564 | 4880 | 6.933514 | TTAAAAAGGATGAAAGGAGGCAAT | 57.066 | 33.333 | 0.00 | 0.00 | 0.00 | 3.56 |
3592 | 4908 | 2.426268 | GGCCCTGATTGTATCCCCATTT | 60.426 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3606 | 4922 | 1.824852 | CCCATTTAGGTGTGGAAAGGC | 59.175 | 52.381 | 0.00 | 0.00 | 37.72 | 4.35 |
3703 | 5023 | 9.845214 | AAGAATGGAGGAGTATATTAGTACCAT | 57.155 | 33.333 | 0.00 | 0.00 | 37.23 | 3.55 |
3779 | 5099 | 3.216800 | TGATGAGCCATACAATGAAGCC | 58.783 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
3784 | 5104 | 2.091720 | AGCCATACAATGAAGCCATGGA | 60.092 | 45.455 | 18.40 | 0.00 | 38.77 | 3.41 |
3823 | 5143 | 3.436704 | CCGCTTAAGAAGAATGACAAGCA | 59.563 | 43.478 | 6.67 | 0.00 | 38.59 | 3.91 |
3910 | 5231 | 6.194967 | TGACAACTTATGGAGAGATACAGGA | 58.805 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4074 | 5395 | 2.092995 | TGTTGTGACAAGTGTTCGAACG | 59.907 | 45.455 | 22.48 | 11.14 | 31.49 | 3.95 |
4075 | 5396 | 1.999048 | TGTGACAAGTGTTCGAACGT | 58.001 | 45.000 | 22.48 | 14.25 | 0.00 | 3.99 |
4151 | 5473 | 4.498241 | CTTTGAGCCCTTATCTTTTTGCC | 58.502 | 43.478 | 0.00 | 0.00 | 0.00 | 4.52 |
4235 | 5557 | 3.742327 | CGGATGATGTGGTGCTAGTTGAT | 60.742 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
4345 | 5669 | 3.609853 | AGTACATGATGTGCGGTTTCAT | 58.390 | 40.909 | 8.61 | 0.00 | 38.05 | 2.57 |
4351 | 5675 | 5.822519 | ACATGATGTGCGGTTTCATTACTAT | 59.177 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
4554 | 5885 | 4.051237 | CCACAAAAGCTAAAAGGCAAGTC | 58.949 | 43.478 | 0.00 | 0.00 | 34.17 | 3.01 |
4589 | 5920 | 2.931325 | GTTCGACCCGCAATGTTGTATA | 59.069 | 45.455 | 0.00 | 0.00 | 0.00 | 1.47 |
4639 | 5970 | 4.986034 | CGACATGTTCAACAGTTAGGTGTA | 59.014 | 41.667 | 0.00 | 0.00 | 35.97 | 2.90 |
4783 | 6114 | 6.317140 | GTCTGAGATGGTTTGAGCATATTCAA | 59.683 | 38.462 | 0.00 | 0.00 | 36.31 | 2.69 |
4796 | 6127 | 0.326595 | TATTCAACGCAGGCCTCCAA | 59.673 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
4805 | 6136 | 1.075659 | AGGCCTCCAAAAGCTCCAC | 59.924 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
4860 | 6191 | 1.001282 | AAGAGAGGTCGGGGTAGACT | 58.999 | 55.000 | 0.00 | 0.00 | 40.76 | 3.24 |
4888 | 6219 | 3.515502 | TGACATGGGAGGAGTCTGTTAAG | 59.484 | 47.826 | 0.00 | 0.00 | 33.56 | 1.85 |
4889 | 6220 | 3.769844 | GACATGGGAGGAGTCTGTTAAGA | 59.230 | 47.826 | 0.00 | 0.00 | 0.00 | 2.10 |
4890 | 6221 | 3.772025 | ACATGGGAGGAGTCTGTTAAGAG | 59.228 | 47.826 | 0.00 | 0.00 | 31.37 | 2.85 |
4891 | 6222 | 3.827817 | TGGGAGGAGTCTGTTAAGAGA | 57.172 | 47.619 | 0.00 | 0.00 | 31.37 | 3.10 |
5125 | 6458 | 5.410067 | GCTGTATTTTATTGCCTTGCTTCA | 58.590 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
5134 | 6468 | 2.725637 | TGCCTTGCTTCATATCTTGCA | 58.274 | 42.857 | 0.00 | 0.00 | 0.00 | 4.08 |
5161 | 6495 | 2.561478 | TGGCAAGGACTTTACAGACC | 57.439 | 50.000 | 0.00 | 0.00 | 35.23 | 3.85 |
5252 | 6586 | 9.665719 | TTAAGATGTGCACATTTTACTGAGATA | 57.334 | 29.630 | 31.54 | 18.38 | 34.12 | 1.98 |
5344 | 6678 | 1.963515 | GGATGGTGCACCTTTTCTGTT | 59.036 | 47.619 | 34.75 | 10.56 | 36.82 | 3.16 |
5478 | 6812 | 1.870064 | AATGGAAAATGGAGGCCCTG | 58.130 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
5541 | 6875 | 4.260212 | CCAAAACTTCTGTGTGTACGTCTG | 60.260 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
5542 | 6876 | 2.795175 | ACTTCTGTGTGTACGTCTGG | 57.205 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
5543 | 6877 | 2.029623 | ACTTCTGTGTGTACGTCTGGT | 58.970 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
5544 | 6878 | 3.216800 | ACTTCTGTGTGTACGTCTGGTA | 58.783 | 45.455 | 0.00 | 0.00 | 0.00 | 3.25 |
5545 | 6879 | 3.825014 | ACTTCTGTGTGTACGTCTGGTAT | 59.175 | 43.478 | 0.00 | 0.00 | 32.74 | 2.73 |
5546 | 6880 | 5.005740 | ACTTCTGTGTGTACGTCTGGTATA | 58.994 | 41.667 | 0.00 | 0.00 | 32.74 | 1.47 |
5547 | 6881 | 4.952262 | TCTGTGTGTACGTCTGGTATAC | 57.048 | 45.455 | 0.00 | 0.00 | 41.92 | 1.47 |
5634 | 7153 | 2.627699 | GCCATTTTCAACTGAAGGGTGA | 59.372 | 45.455 | 8.01 | 0.00 | 40.31 | 4.02 |
5861 | 7380 | 1.135575 | GCTGTGTACTGAAAGCCATGC | 60.136 | 52.381 | 0.00 | 0.00 | 37.60 | 4.06 |
5862 | 7381 | 2.430465 | CTGTGTACTGAAAGCCATGCT | 58.570 | 47.619 | 0.00 | 0.00 | 42.56 | 3.79 |
5909 | 7428 | 2.687935 | ACAACTTACCTTGTTGCCTGTG | 59.312 | 45.455 | 6.53 | 0.00 | 46.03 | 3.66 |
6335 | 7854 | 0.471191 | TCTGATGATTGGAGGCGCAT | 59.529 | 50.000 | 10.83 | 0.00 | 0.00 | 4.73 |
6921 | 8441 | 2.105134 | ACCTGTCCATTCAAACGGTGTA | 59.895 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
6934 | 8454 | 6.146216 | TCAAACGGTGTAAAATGCAGTATTG | 58.854 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
7315 | 8869 | 1.825191 | CAGGAACCATGGGGCATCG | 60.825 | 63.158 | 18.09 | 0.00 | 37.90 | 3.84 |
7553 | 9107 | 2.864343 | GCAAGTGTAAGGTACATAGCGG | 59.136 | 50.000 | 0.00 | 0.00 | 41.34 | 5.52 |
7555 | 9109 | 3.022557 | AGTGTAAGGTACATAGCGGGA | 57.977 | 47.619 | 0.00 | 0.00 | 41.34 | 5.14 |
7721 | 9400 | 0.744874 | GGCTCGCCTGTACTCATACA | 59.255 | 55.000 | 0.00 | 0.00 | 39.06 | 2.29 |
7906 | 9586 | 6.898041 | TGAATCCGTGAAATCTGTTTACAAG | 58.102 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
7915 | 9597 | 7.587757 | GTGAAATCTGTTTACAAGATGTGTGTC | 59.412 | 37.037 | 0.00 | 0.00 | 41.89 | 3.67 |
7916 | 9598 | 7.498900 | TGAAATCTGTTTACAAGATGTGTGTCT | 59.501 | 33.333 | 0.00 | 0.00 | 41.89 | 3.41 |
7946 | 9628 | 1.372582 | CTACGCATGCTTGTGACCAT | 58.627 | 50.000 | 17.13 | 0.22 | 36.82 | 3.55 |
7971 | 9653 | 0.892358 | GGGTTTTTCCTGGTCCGACC | 60.892 | 60.000 | 10.96 | 10.96 | 39.22 | 4.79 |
8076 | 10319 | 2.562298 | CAATTTGGGAGCTGTTTGCCTA | 59.438 | 45.455 | 0.00 | 0.00 | 44.23 | 3.93 |
8081 | 10324 | 0.523519 | GGAGCTGTTTGCCTAGTTGC | 59.476 | 55.000 | 0.00 | 0.00 | 44.23 | 4.17 |
8085 | 10328 | 0.883833 | CTGTTTGCCTAGTTGCCTGG | 59.116 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
8128 | 10371 | 2.433838 | CCAGCGGTGACAGCAGAG | 60.434 | 66.667 | 17.83 | 0.00 | 37.01 | 3.35 |
8129 | 10372 | 3.117171 | CAGCGGTGACAGCAGAGC | 61.117 | 66.667 | 9.50 | 0.14 | 37.01 | 4.09 |
8130 | 10373 | 3.619767 | AGCGGTGACAGCAGAGCA | 61.620 | 61.111 | 10.82 | 0.00 | 37.01 | 4.26 |
8131 | 10374 | 2.666190 | GCGGTGACAGCAGAGCAA | 60.666 | 61.111 | 2.09 | 0.00 | 34.19 | 3.91 |
8132 | 10375 | 2.675056 | GCGGTGACAGCAGAGCAAG | 61.675 | 63.158 | 2.09 | 0.00 | 34.19 | 4.01 |
8133 | 10376 | 1.301244 | CGGTGACAGCAGAGCAAGT | 60.301 | 57.895 | 5.35 | 0.00 | 0.00 | 3.16 |
8136 | 10379 | 3.295734 | TGACAGCAGAGCAAGTCAC | 57.704 | 52.632 | 11.47 | 0.00 | 39.53 | 3.67 |
8137 | 10380 | 0.250038 | TGACAGCAGAGCAAGTCACC | 60.250 | 55.000 | 11.47 | 0.00 | 39.53 | 4.02 |
8138 | 10381 | 0.034616 | GACAGCAGAGCAAGTCACCT | 59.965 | 55.000 | 8.91 | 0.00 | 36.42 | 4.00 |
8142 | 10531 | 1.233285 | GCAGAGCAAGTCACCTGTGG | 61.233 | 60.000 | 0.00 | 0.00 | 0.00 | 4.17 |
8199 | 10588 | 9.106070 | GTTTTTATGAAATACTACATCCGTCCT | 57.894 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
8266 | 10830 | 7.039853 | ACACTAAAAAGACAGAGGAGGTAGTAC | 60.040 | 40.741 | 0.00 | 0.00 | 0.00 | 2.73 |
8268 | 10832 | 5.986501 | AAAAGACAGAGGAGGTAGTACTG | 57.013 | 43.478 | 5.39 | 0.00 | 35.14 | 2.74 |
8270 | 10834 | 5.775813 | AAGACAGAGGAGGTAGTACTGTA | 57.224 | 43.478 | 5.39 | 0.00 | 41.01 | 2.74 |
8342 | 10907 | 6.433093 | AGGGGTAGTAACACTAAATGCAAAAG | 59.567 | 38.462 | 0.00 | 0.00 | 31.62 | 2.27 |
8396 | 10961 | 4.822350 | TCTGAATCTAGACCAGTATCACGG | 59.178 | 45.833 | 18.25 | 0.00 | 0.00 | 4.94 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
34 | 35 | 9.083080 | CGACATGAGTAATACAAGTTTGATGTA | 57.917 | 33.333 | 0.00 | 0.00 | 37.64 | 2.29 |
35 | 36 | 7.817478 | TCGACATGAGTAATACAAGTTTGATGT | 59.183 | 33.333 | 0.00 | 0.00 | 34.81 | 3.06 |
36 | 37 | 8.185003 | TCGACATGAGTAATACAAGTTTGATG | 57.815 | 34.615 | 0.00 | 0.00 | 0.00 | 3.07 |
37 | 38 | 8.948631 | ATCGACATGAGTAATACAAGTTTGAT | 57.051 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
38 | 39 | 7.220108 | CGATCGACATGAGTAATACAAGTTTGA | 59.780 | 37.037 | 10.26 | 0.00 | 0.00 | 2.69 |
39 | 40 | 7.009265 | ACGATCGACATGAGTAATACAAGTTTG | 59.991 | 37.037 | 24.34 | 0.00 | 0.00 | 2.93 |
40 | 41 | 7.033791 | ACGATCGACATGAGTAATACAAGTTT | 58.966 | 34.615 | 24.34 | 0.00 | 0.00 | 2.66 |
41 | 42 | 6.561614 | ACGATCGACATGAGTAATACAAGTT | 58.438 | 36.000 | 24.34 | 0.00 | 0.00 | 2.66 |
42 | 43 | 6.132791 | ACGATCGACATGAGTAATACAAGT | 57.867 | 37.500 | 24.34 | 0.00 | 0.00 | 3.16 |
43 | 44 | 7.083502 | GAACGATCGACATGAGTAATACAAG | 57.916 | 40.000 | 24.34 | 0.00 | 0.00 | 3.16 |
68 | 69 | 2.241259 | TGTCGCTCGCTTTATTTTGC | 57.759 | 45.000 | 0.00 | 0.00 | 0.00 | 3.68 |
69 | 70 | 3.810373 | ACTTGTCGCTCGCTTTATTTTG | 58.190 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
70 | 71 | 4.483476 | AACTTGTCGCTCGCTTTATTTT | 57.517 | 36.364 | 0.00 | 0.00 | 0.00 | 1.82 |
71 | 72 | 4.435651 | GCTAACTTGTCGCTCGCTTTATTT | 60.436 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
72 | 73 | 3.062234 | GCTAACTTGTCGCTCGCTTTATT | 59.938 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
73 | 74 | 2.603560 | GCTAACTTGTCGCTCGCTTTAT | 59.396 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
74 | 75 | 1.990563 | GCTAACTTGTCGCTCGCTTTA | 59.009 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
75 | 76 | 0.790814 | GCTAACTTGTCGCTCGCTTT | 59.209 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
76 | 77 | 0.038159 | AGCTAACTTGTCGCTCGCTT | 60.038 | 50.000 | 0.00 | 0.00 | 0.00 | 4.68 |
77 | 78 | 0.734253 | CAGCTAACTTGTCGCTCGCT | 60.734 | 55.000 | 0.00 | 0.00 | 0.00 | 4.93 |
78 | 79 | 1.704582 | CAGCTAACTTGTCGCTCGC | 59.295 | 57.895 | 0.00 | 0.00 | 0.00 | 5.03 |
79 | 80 | 0.734253 | AGCAGCTAACTTGTCGCTCG | 60.734 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
80 | 81 | 1.433534 | AAGCAGCTAACTTGTCGCTC | 58.566 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
81 | 82 | 1.884235 | AAAGCAGCTAACTTGTCGCT | 58.116 | 45.000 | 0.00 | 0.00 | 0.00 | 4.93 |
82 | 83 | 2.310577 | CAAAAGCAGCTAACTTGTCGC | 58.689 | 47.619 | 0.00 | 0.00 | 0.00 | 5.19 |
83 | 84 | 2.290641 | ACCAAAAGCAGCTAACTTGTCG | 59.709 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
84 | 85 | 3.607078 | CGACCAAAAGCAGCTAACTTGTC | 60.607 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
85 | 86 | 2.290641 | CGACCAAAAGCAGCTAACTTGT | 59.709 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
86 | 87 | 2.290641 | ACGACCAAAAGCAGCTAACTTG | 59.709 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
87 | 88 | 2.572290 | ACGACCAAAAGCAGCTAACTT | 58.428 | 42.857 | 0.00 | 0.00 | 0.00 | 2.66 |
88 | 89 | 2.256117 | ACGACCAAAAGCAGCTAACT | 57.744 | 45.000 | 0.00 | 0.00 | 0.00 | 2.24 |
89 | 90 | 4.680171 | AATACGACCAAAAGCAGCTAAC | 57.320 | 40.909 | 0.00 | 0.00 | 0.00 | 2.34 |
90 | 91 | 6.995511 | ATTAATACGACCAAAAGCAGCTAA | 57.004 | 33.333 | 0.00 | 0.00 | 0.00 | 3.09 |
91 | 92 | 8.671384 | ATTATTAATACGACCAAAAGCAGCTA | 57.329 | 30.769 | 0.00 | 0.00 | 0.00 | 3.32 |
92 | 93 | 6.995511 | TTATTAATACGACCAAAAGCAGCT | 57.004 | 33.333 | 0.00 | 0.00 | 0.00 | 4.24 |
93 | 94 | 8.015658 | CCTATTATTAATACGACCAAAAGCAGC | 58.984 | 37.037 | 0.00 | 0.00 | 0.00 | 5.25 |
94 | 95 | 9.268268 | TCCTATTATTAATACGACCAAAAGCAG | 57.732 | 33.333 | 0.00 | 0.00 | 0.00 | 4.24 |
95 | 96 | 9.048446 | GTCCTATTATTAATACGACCAAAAGCA | 57.952 | 33.333 | 11.50 | 0.00 | 0.00 | 3.91 |
96 | 97 | 9.269453 | AGTCCTATTATTAATACGACCAAAAGC | 57.731 | 33.333 | 15.87 | 0.00 | 32.94 | 3.51 |
111 | 112 | 8.881262 | CCCTAACCAAGTCATAGTCCTATTATT | 58.119 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
112 | 113 | 8.017251 | ACCCTAACCAAGTCATAGTCCTATTAT | 58.983 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
113 | 114 | 7.367828 | ACCCTAACCAAGTCATAGTCCTATTA | 58.632 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
114 | 115 | 6.210522 | ACCCTAACCAAGTCATAGTCCTATT | 58.789 | 40.000 | 0.00 | 0.00 | 0.00 | 1.73 |
115 | 116 | 5.789535 | ACCCTAACCAAGTCATAGTCCTAT | 58.210 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
116 | 117 | 5.206587 | GACCCTAACCAAGTCATAGTCCTA | 58.793 | 45.833 | 0.00 | 0.00 | 0.00 | 2.94 |
117 | 118 | 4.031611 | GACCCTAACCAAGTCATAGTCCT | 58.968 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
118 | 119 | 3.773119 | TGACCCTAACCAAGTCATAGTCC | 59.227 | 47.826 | 0.00 | 0.00 | 35.67 | 3.85 |
119 | 120 | 4.141914 | CCTGACCCTAACCAAGTCATAGTC | 60.142 | 50.000 | 0.00 | 0.00 | 39.64 | 2.59 |
120 | 121 | 3.775316 | CCTGACCCTAACCAAGTCATAGT | 59.225 | 47.826 | 0.00 | 0.00 | 39.64 | 2.12 |
121 | 122 | 3.775316 | ACCTGACCCTAACCAAGTCATAG | 59.225 | 47.826 | 0.00 | 0.00 | 39.64 | 2.23 |
122 | 123 | 3.773119 | GACCTGACCCTAACCAAGTCATA | 59.227 | 47.826 | 0.00 | 0.00 | 39.64 | 2.15 |
123 | 124 | 2.572104 | GACCTGACCCTAACCAAGTCAT | 59.428 | 50.000 | 0.00 | 0.00 | 39.64 | 3.06 |
124 | 125 | 1.975680 | GACCTGACCCTAACCAAGTCA | 59.024 | 52.381 | 0.00 | 0.00 | 38.17 | 3.41 |
125 | 126 | 1.278413 | GGACCTGACCCTAACCAAGTC | 59.722 | 57.143 | 0.00 | 0.00 | 0.00 | 3.01 |
126 | 127 | 1.132495 | AGGACCTGACCCTAACCAAGT | 60.132 | 52.381 | 0.00 | 0.00 | 30.92 | 3.16 |
127 | 128 | 1.555533 | GAGGACCTGACCCTAACCAAG | 59.444 | 57.143 | 0.00 | 0.00 | 33.36 | 3.61 |
128 | 129 | 1.652947 | GAGGACCTGACCCTAACCAA | 58.347 | 55.000 | 0.00 | 0.00 | 33.36 | 3.67 |
129 | 130 | 0.252558 | GGAGGACCTGACCCTAACCA | 60.253 | 60.000 | 0.00 | 0.00 | 33.36 | 3.67 |
130 | 131 | 0.252558 | TGGAGGACCTGACCCTAACC | 60.253 | 60.000 | 0.00 | 0.00 | 37.04 | 2.85 |
131 | 132 | 1.196012 | CTGGAGGACCTGACCCTAAC | 58.804 | 60.000 | 0.00 | 0.00 | 37.31 | 2.34 |
132 | 133 | 1.089978 | TCTGGAGGACCTGACCCTAA | 58.910 | 55.000 | 0.00 | 0.00 | 38.81 | 2.69 |
133 | 134 | 1.007238 | CTTCTGGAGGACCTGACCCTA | 59.993 | 57.143 | 0.00 | 0.00 | 42.36 | 3.53 |
134 | 135 | 0.252467 | CTTCTGGAGGACCTGACCCT | 60.252 | 60.000 | 0.00 | 0.00 | 42.36 | 4.34 |
135 | 136 | 0.545548 | ACTTCTGGAGGACCTGACCC | 60.546 | 60.000 | 0.00 | 0.00 | 42.36 | 4.46 |
136 | 137 | 1.353091 | AACTTCTGGAGGACCTGACC | 58.647 | 55.000 | 0.00 | 0.00 | 42.36 | 4.02 |
137 | 138 | 3.142174 | CAAAACTTCTGGAGGACCTGAC | 58.858 | 50.000 | 0.00 | 0.00 | 42.36 | 3.51 |
138 | 139 | 2.106511 | CCAAAACTTCTGGAGGACCTGA | 59.893 | 50.000 | 0.00 | 0.00 | 41.27 | 3.86 |
139 | 140 | 2.106511 | TCCAAAACTTCTGGAGGACCTG | 59.893 | 50.000 | 0.00 | 0.00 | 38.07 | 4.00 |
140 | 141 | 2.418669 | TCCAAAACTTCTGGAGGACCT | 58.581 | 47.619 | 0.00 | 0.00 | 38.07 | 3.85 |
141 | 142 | 2.951229 | TCCAAAACTTCTGGAGGACC | 57.049 | 50.000 | 0.00 | 0.00 | 38.07 | 4.46 |
146 | 147 | 5.003804 | GCAACTATCTCCAAAACTTCTGGA | 58.996 | 41.667 | 0.00 | 0.00 | 40.77 | 3.86 |
147 | 148 | 5.006386 | AGCAACTATCTCCAAAACTTCTGG | 58.994 | 41.667 | 0.00 | 0.00 | 35.05 | 3.86 |
148 | 149 | 5.702670 | TCAGCAACTATCTCCAAAACTTCTG | 59.297 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
149 | 150 | 5.869579 | TCAGCAACTATCTCCAAAACTTCT | 58.130 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
150 | 151 | 6.428159 | TCTTCAGCAACTATCTCCAAAACTTC | 59.572 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
151 | 152 | 6.299141 | TCTTCAGCAACTATCTCCAAAACTT | 58.701 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
152 | 153 | 5.869579 | TCTTCAGCAACTATCTCCAAAACT | 58.130 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
153 | 154 | 6.749923 | ATCTTCAGCAACTATCTCCAAAAC | 57.250 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
154 | 155 | 6.716628 | ACAATCTTCAGCAACTATCTCCAAAA | 59.283 | 34.615 | 0.00 | 0.00 | 0.00 | 2.44 |
155 | 156 | 6.240894 | ACAATCTTCAGCAACTATCTCCAAA | 58.759 | 36.000 | 0.00 | 0.00 | 0.00 | 3.28 |
156 | 157 | 5.809001 | ACAATCTTCAGCAACTATCTCCAA | 58.191 | 37.500 | 0.00 | 0.00 | 0.00 | 3.53 |
157 | 158 | 5.426689 | ACAATCTTCAGCAACTATCTCCA | 57.573 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
158 | 159 | 7.712639 | TCATTACAATCTTCAGCAACTATCTCC | 59.287 | 37.037 | 0.00 | 0.00 | 0.00 | 3.71 |
159 | 160 | 8.654230 | TCATTACAATCTTCAGCAACTATCTC | 57.346 | 34.615 | 0.00 | 0.00 | 0.00 | 2.75 |
163 | 164 | 9.890629 | AAGTATCATTACAATCTTCAGCAACTA | 57.109 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
164 | 165 | 8.798859 | AAGTATCATTACAATCTTCAGCAACT | 57.201 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
165 | 166 | 9.282247 | CAAAGTATCATTACAATCTTCAGCAAC | 57.718 | 33.333 | 0.00 | 0.00 | 0.00 | 4.17 |
166 | 167 | 9.230122 | TCAAAGTATCATTACAATCTTCAGCAA | 57.770 | 29.630 | 0.00 | 0.00 | 0.00 | 3.91 |
167 | 168 | 8.791327 | TCAAAGTATCATTACAATCTTCAGCA | 57.209 | 30.769 | 0.00 | 0.00 | 0.00 | 4.41 |
186 | 187 | 9.337396 | TCAACACTTGTATTACTCATTCAAAGT | 57.663 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
187 | 188 | 9.817365 | CTCAACACTTGTATTACTCATTCAAAG | 57.183 | 33.333 | 0.00 | 0.00 | 0.00 | 2.77 |
188 | 189 | 8.289618 | GCTCAACACTTGTATTACTCATTCAAA | 58.710 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
189 | 190 | 7.094805 | GGCTCAACACTTGTATTACTCATTCAA | 60.095 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
190 | 191 | 6.371548 | GGCTCAACACTTGTATTACTCATTCA | 59.628 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
191 | 192 | 6.183360 | GGGCTCAACACTTGTATTACTCATTC | 60.183 | 42.308 | 0.00 | 0.00 | 0.00 | 2.67 |
192 | 193 | 5.648092 | GGGCTCAACACTTGTATTACTCATT | 59.352 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
193 | 194 | 5.186198 | GGGCTCAACACTTGTATTACTCAT | 58.814 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
194 | 195 | 4.575885 | GGGCTCAACACTTGTATTACTCA | 58.424 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
195 | 196 | 3.617263 | CGGGCTCAACACTTGTATTACTC | 59.383 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
196 | 197 | 3.596214 | CGGGCTCAACACTTGTATTACT | 58.404 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
197 | 198 | 2.095372 | GCGGGCTCAACACTTGTATTAC | 59.905 | 50.000 | 0.00 | 0.00 | 0.00 | 1.89 |
198 | 199 | 2.289756 | TGCGGGCTCAACACTTGTATTA | 60.290 | 45.455 | 0.00 | 0.00 | 0.00 | 0.98 |
199 | 200 | 1.165270 | GCGGGCTCAACACTTGTATT | 58.835 | 50.000 | 0.00 | 0.00 | 0.00 | 1.89 |
200 | 201 | 0.036164 | TGCGGGCTCAACACTTGTAT | 59.964 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
201 | 202 | 0.179043 | TTGCGGGCTCAACACTTGTA | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
202 | 203 | 1.034838 | TTTGCGGGCTCAACACTTGT | 61.035 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
203 | 204 | 0.102120 | TTTTGCGGGCTCAACACTTG | 59.898 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
204 | 205 | 0.820871 | TTTTTGCGGGCTCAACACTT | 59.179 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
205 | 206 | 2.499214 | TTTTTGCGGGCTCAACACT | 58.501 | 47.368 | 0.00 | 0.00 | 0.00 | 3.55 |
234 | 235 | 5.125100 | TCTGACCAATGAAGTTTGAATGC | 57.875 | 39.130 | 0.00 | 0.00 | 0.00 | 3.56 |
249 | 250 | 0.260230 | TTTGGTTGCCCTTCTGACCA | 59.740 | 50.000 | 0.00 | 0.00 | 40.23 | 4.02 |
279 | 280 | 3.592059 | CCAAGGTCATTTTGATTGCCTG | 58.408 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
341 | 342 | 2.027192 | TGGCACTTATCAAGGTCCTCAC | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
344 | 345 | 3.780294 | TGTATGGCACTTATCAAGGTCCT | 59.220 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
347 | 348 | 6.126478 | ACCTTATGTATGGCACTTATCAAGGT | 60.126 | 38.462 | 12.76 | 12.76 | 0.00 | 3.50 |
350 | 351 | 7.797062 | TGTACCTTATGTATGGCACTTATCAA | 58.203 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
352 | 353 | 7.095187 | GCTTGTACCTTATGTATGGCACTTATC | 60.095 | 40.741 | 0.00 | 0.00 | 0.00 | 1.75 |
360 | 361 | 7.877612 | TGTCATATGCTTGTACCTTATGTATGG | 59.122 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
363 | 364 | 8.482943 | AGTTGTCATATGCTTGTACCTTATGTA | 58.517 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
366 | 367 | 6.992715 | GGAGTTGTCATATGCTTGTACCTTAT | 59.007 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
396 | 397 | 7.317269 | CGTGTCACTAAACTTATCGTCAAAAAC | 59.683 | 37.037 | 0.65 | 0.00 | 0.00 | 2.43 |
402 | 403 | 4.792189 | CCTCGTGTCACTAAACTTATCGTC | 59.208 | 45.833 | 0.65 | 0.00 | 0.00 | 4.20 |
405 | 406 | 6.472808 | GTCATCCTCGTGTCACTAAACTTATC | 59.527 | 42.308 | 0.65 | 0.00 | 0.00 | 1.75 |
406 | 407 | 6.071560 | TGTCATCCTCGTGTCACTAAACTTAT | 60.072 | 38.462 | 0.65 | 0.00 | 0.00 | 1.73 |
442 | 443 | 2.788786 | GCACGAAAGTTGTCATGTTTGG | 59.211 | 45.455 | 0.00 | 0.00 | 46.40 | 3.28 |
463 | 464 | 8.682016 | CAAGTTTCTGTTAAAAATAAGCTCACG | 58.318 | 33.333 | 0.00 | 0.00 | 0.00 | 4.35 |
466 | 467 | 7.651704 | TGGCAAGTTTCTGTTAAAAATAAGCTC | 59.348 | 33.333 | 0.00 | 0.00 | 0.00 | 4.09 |
468 | 469 | 7.707774 | TGGCAAGTTTCTGTTAAAAATAAGC | 57.292 | 32.000 | 0.00 | 0.00 | 0.00 | 3.09 |
476 | 477 | 6.714810 | AGTGACATATGGCAAGTTTCTGTTAA | 59.285 | 34.615 | 14.28 | 0.00 | 32.99 | 2.01 |
480 | 481 | 6.108687 | TCTAGTGACATATGGCAAGTTTCTG | 58.891 | 40.000 | 14.28 | 1.67 | 32.99 | 3.02 |
502 | 503 | 6.929049 | TCAGTCACGTAAAGATGACAATTTCT | 59.071 | 34.615 | 7.10 | 0.00 | 46.34 | 2.52 |
503 | 504 | 7.117241 | TCAGTCACGTAAAGATGACAATTTC | 57.883 | 36.000 | 7.10 | 0.00 | 46.34 | 2.17 |
563 | 564 | 2.691927 | TGAGTGTCACATGTGAGATGC | 58.308 | 47.619 | 28.54 | 21.20 | 40.75 | 3.91 |
584 | 585 | 5.048782 | GGCAATTTTAGTGTCACATGTGAGA | 60.049 | 40.000 | 28.54 | 24.65 | 40.75 | 3.27 |
585 | 586 | 5.156355 | GGCAATTTTAGTGTCACATGTGAG | 58.844 | 41.667 | 28.54 | 13.56 | 40.75 | 3.51 |
586 | 587 | 4.320129 | CGGCAATTTTAGTGTCACATGTGA | 60.320 | 41.667 | 24.56 | 24.56 | 37.24 | 3.58 |
587 | 588 | 3.913763 | CGGCAATTTTAGTGTCACATGTG | 59.086 | 43.478 | 20.18 | 20.18 | 0.00 | 3.21 |
588 | 589 | 3.568007 | ACGGCAATTTTAGTGTCACATGT | 59.432 | 39.130 | 5.62 | 0.00 | 0.00 | 3.21 |
589 | 590 | 4.159377 | ACGGCAATTTTAGTGTCACATG | 57.841 | 40.909 | 5.62 | 0.00 | 0.00 | 3.21 |
590 | 591 | 4.142988 | CGTACGGCAATTTTAGTGTCACAT | 60.143 | 41.667 | 7.57 | 0.00 | 0.00 | 3.21 |
591 | 592 | 3.184783 | CGTACGGCAATTTTAGTGTCACA | 59.815 | 43.478 | 7.57 | 0.00 | 0.00 | 3.58 |
592 | 593 | 3.184986 | ACGTACGGCAATTTTAGTGTCAC | 59.815 | 43.478 | 21.06 | 0.00 | 0.00 | 3.67 |
593 | 594 | 3.391965 | ACGTACGGCAATTTTAGTGTCA | 58.608 | 40.909 | 21.06 | 0.00 | 0.00 | 3.58 |
594 | 595 | 3.429543 | TGACGTACGGCAATTTTAGTGTC | 59.570 | 43.478 | 24.19 | 3.93 | 0.00 | 3.67 |
595 | 596 | 3.184986 | GTGACGTACGGCAATTTTAGTGT | 59.815 | 43.478 | 28.29 | 0.00 | 33.39 | 3.55 |
596 | 597 | 3.430895 | AGTGACGTACGGCAATTTTAGTG | 59.569 | 43.478 | 28.29 | 0.00 | 33.39 | 2.74 |
597 | 598 | 3.430895 | CAGTGACGTACGGCAATTTTAGT | 59.569 | 43.478 | 28.29 | 1.07 | 33.39 | 2.24 |
598 | 599 | 3.181524 | CCAGTGACGTACGGCAATTTTAG | 60.182 | 47.826 | 28.29 | 12.70 | 33.39 | 1.85 |
599 | 600 | 2.737783 | CCAGTGACGTACGGCAATTTTA | 59.262 | 45.455 | 28.29 | 0.00 | 33.39 | 1.52 |
600 | 601 | 1.533731 | CCAGTGACGTACGGCAATTTT | 59.466 | 47.619 | 28.29 | 9.19 | 33.39 | 1.82 |
601 | 602 | 1.153353 | CCAGTGACGTACGGCAATTT | 58.847 | 50.000 | 28.29 | 11.99 | 33.39 | 1.82 |
602 | 603 | 0.319083 | TCCAGTGACGTACGGCAATT | 59.681 | 50.000 | 28.29 | 14.86 | 33.39 | 2.32 |
603 | 604 | 0.319083 | TTCCAGTGACGTACGGCAAT | 59.681 | 50.000 | 28.29 | 24.09 | 33.39 | 3.56 |
604 | 605 | 0.104487 | TTTCCAGTGACGTACGGCAA | 59.896 | 50.000 | 28.29 | 7.38 | 33.39 | 4.52 |
605 | 606 | 0.319083 | ATTTCCAGTGACGTACGGCA | 59.681 | 50.000 | 22.42 | 22.42 | 0.00 | 5.69 |
606 | 607 | 1.127951 | CAATTTCCAGTGACGTACGGC | 59.872 | 52.381 | 21.06 | 18.72 | 0.00 | 5.68 |
607 | 608 | 2.409975 | ACAATTTCCAGTGACGTACGG | 58.590 | 47.619 | 21.06 | 0.37 | 0.00 | 4.02 |
608 | 609 | 2.090041 | CGACAATTTCCAGTGACGTACG | 59.910 | 50.000 | 15.01 | 15.01 | 32.69 | 3.67 |
609 | 610 | 3.120782 | GTCGACAATTTCCAGTGACGTAC | 59.879 | 47.826 | 11.55 | 0.00 | 37.42 | 3.67 |
610 | 611 | 3.311106 | GTCGACAATTTCCAGTGACGTA | 58.689 | 45.455 | 11.55 | 0.00 | 37.42 | 3.57 |
611 | 612 | 2.132762 | GTCGACAATTTCCAGTGACGT | 58.867 | 47.619 | 11.55 | 0.00 | 37.42 | 4.34 |
612 | 613 | 1.459592 | GGTCGACAATTTCCAGTGACG | 59.540 | 52.381 | 18.91 | 0.00 | 37.47 | 4.35 |
613 | 614 | 2.737252 | GAGGTCGACAATTTCCAGTGAC | 59.263 | 50.000 | 18.91 | 0.00 | 0.00 | 3.67 |
614 | 615 | 2.367241 | TGAGGTCGACAATTTCCAGTGA | 59.633 | 45.455 | 18.91 | 0.00 | 0.00 | 3.41 |
615 | 616 | 2.480419 | GTGAGGTCGACAATTTCCAGTG | 59.520 | 50.000 | 18.91 | 0.00 | 0.00 | 3.66 |
616 | 617 | 2.767505 | GTGAGGTCGACAATTTCCAGT | 58.232 | 47.619 | 18.91 | 0.00 | 0.00 | 4.00 |
617 | 618 | 1.726791 | CGTGAGGTCGACAATTTCCAG | 59.273 | 52.381 | 18.91 | 2.72 | 0.00 | 3.86 |
618 | 619 | 1.069513 | ACGTGAGGTCGACAATTTCCA | 59.930 | 47.619 | 18.91 | 2.51 | 34.70 | 3.53 |
619 | 620 | 1.459592 | CACGTGAGGTCGACAATTTCC | 59.540 | 52.381 | 18.91 | 0.00 | 34.70 | 3.13 |
620 | 621 | 2.155155 | GTCACGTGAGGTCGACAATTTC | 59.845 | 50.000 | 20.73 | 9.48 | 34.70 | 2.17 |
621 | 622 | 2.132762 | GTCACGTGAGGTCGACAATTT | 58.867 | 47.619 | 20.73 | 0.00 | 34.70 | 1.82 |
622 | 623 | 1.340248 | AGTCACGTGAGGTCGACAATT | 59.660 | 47.619 | 20.73 | 1.61 | 32.52 | 2.32 |
623 | 624 | 0.959553 | AGTCACGTGAGGTCGACAAT | 59.040 | 50.000 | 20.73 | 4.87 | 32.52 | 2.71 |
624 | 625 | 0.030235 | CAGTCACGTGAGGTCGACAA | 59.970 | 55.000 | 20.73 | 0.00 | 32.52 | 3.18 |
625 | 626 | 0.816421 | TCAGTCACGTGAGGTCGACA | 60.816 | 55.000 | 20.73 | 0.00 | 32.52 | 4.35 |
626 | 627 | 0.309922 | TTCAGTCACGTGAGGTCGAC | 59.690 | 55.000 | 20.73 | 7.13 | 34.70 | 4.20 |
627 | 628 | 1.026584 | TTTCAGTCACGTGAGGTCGA | 58.973 | 50.000 | 20.73 | 10.15 | 34.70 | 4.20 |
628 | 629 | 2.065993 | ATTTCAGTCACGTGAGGTCG | 57.934 | 50.000 | 20.73 | 7.78 | 0.00 | 4.79 |
629 | 630 | 5.168569 | TGATAATTTCAGTCACGTGAGGTC | 58.831 | 41.667 | 20.73 | 7.60 | 0.00 | 3.85 |
630 | 631 | 5.147330 | TGATAATTTCAGTCACGTGAGGT | 57.853 | 39.130 | 20.73 | 6.50 | 0.00 | 3.85 |
631 | 632 | 7.770801 | TTATGATAATTTCAGTCACGTGAGG | 57.229 | 36.000 | 20.73 | 14.59 | 37.89 | 3.86 |
655 | 656 | 5.012328 | TGGCATTTTGGTTCTACGTTTTT | 57.988 | 34.783 | 0.00 | 0.00 | 0.00 | 1.94 |
656 | 657 | 4.657436 | TGGCATTTTGGTTCTACGTTTT | 57.343 | 36.364 | 0.00 | 0.00 | 0.00 | 2.43 |
657 | 658 | 4.555262 | CATGGCATTTTGGTTCTACGTTT | 58.445 | 39.130 | 0.00 | 0.00 | 0.00 | 3.60 |
658 | 659 | 3.613910 | GCATGGCATTTTGGTTCTACGTT | 60.614 | 43.478 | 0.00 | 0.00 | 0.00 | 3.99 |
659 | 660 | 2.094752 | GCATGGCATTTTGGTTCTACGT | 60.095 | 45.455 | 0.00 | 0.00 | 0.00 | 3.57 |
660 | 661 | 2.094803 | TGCATGGCATTTTGGTTCTACG | 60.095 | 45.455 | 0.00 | 0.00 | 31.71 | 3.51 |
661 | 662 | 3.591196 | TGCATGGCATTTTGGTTCTAC | 57.409 | 42.857 | 0.00 | 0.00 | 31.71 | 2.59 |
673 | 674 | 0.961857 | GTGTCACCAGATGCATGGCA | 60.962 | 55.000 | 2.46 | 0.00 | 44.80 | 4.92 |
674 | 675 | 0.679002 | AGTGTCACCAGATGCATGGC | 60.679 | 55.000 | 2.46 | 0.00 | 44.80 | 4.40 |
675 | 676 | 1.830279 | AAGTGTCACCAGATGCATGG | 58.170 | 50.000 | 2.46 | 3.82 | 46.47 | 3.66 |
676 | 677 | 4.193865 | TGATAAGTGTCACCAGATGCATG | 58.806 | 43.478 | 2.46 | 0.00 | 0.00 | 4.06 |
677 | 678 | 4.492494 | TGATAAGTGTCACCAGATGCAT | 57.508 | 40.909 | 0.00 | 0.00 | 0.00 | 3.96 |
678 | 679 | 3.979101 | TGATAAGTGTCACCAGATGCA | 57.021 | 42.857 | 0.00 | 0.00 | 0.00 | 3.96 |
679 | 680 | 5.824904 | AAATGATAAGTGTCACCAGATGC | 57.175 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
680 | 681 | 7.275183 | TCCTAAATGATAAGTGTCACCAGATG | 58.725 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
681 | 682 | 7.437713 | TCCTAAATGATAAGTGTCACCAGAT | 57.562 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
682 | 683 | 6.867519 | TCCTAAATGATAAGTGTCACCAGA | 57.132 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
683 | 684 | 7.275183 | TCATCCTAAATGATAAGTGTCACCAG | 58.725 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
684 | 685 | 7.194112 | TCATCCTAAATGATAAGTGTCACCA | 57.806 | 36.000 | 0.00 | 0.00 | 0.00 | 4.17 |
685 | 686 | 8.682936 | AATCATCCTAAATGATAAGTGTCACC | 57.317 | 34.615 | 0.00 | 0.00 | 37.75 | 4.02 |
698 | 699 | 9.412460 | TGCAATCAGAGTAAAATCATCCTAAAT | 57.588 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
712 | 713 | 1.737838 | CGGCCTTTGCAATCAGAGTA | 58.262 | 50.000 | 0.00 | 0.00 | 40.13 | 2.59 |
717 | 719 | 2.964174 | CTGCGGCCTTTGCAATCA | 59.036 | 55.556 | 0.00 | 0.00 | 42.70 | 2.57 |
718 | 720 | 2.507769 | GCTGCGGCCTTTGCAATC | 60.508 | 61.111 | 6.12 | 0.00 | 42.70 | 2.67 |
806 | 818 | 4.436998 | CAGGTGGACGTCCGGAGC | 62.437 | 72.222 | 28.70 | 21.21 | 39.43 | 4.70 |
807 | 819 | 4.436998 | GCAGGTGGACGTCCGGAG | 62.437 | 72.222 | 28.70 | 18.82 | 39.43 | 4.63 |
1317 | 1330 | 2.514824 | GAAGCGGGATCTGGGTGC | 60.515 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
1373 | 1386 | 1.568504 | TGTCTGAGGCCTAATTCGGT | 58.431 | 50.000 | 4.42 | 0.00 | 0.00 | 4.69 |
1533 | 1551 | 0.539051 | GTCCACCTCCCACTGAGATG | 59.461 | 60.000 | 0.00 | 0.00 | 44.42 | 2.90 |
1600 | 1618 | 1.265095 | GTGTGTCAGTGTGCAAGGATG | 59.735 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
1696 | 1714 | 7.022055 | TGTGTAAACAGTTTGTACTTCCATG | 57.978 | 36.000 | 8.93 | 0.00 | 30.26 | 3.66 |
1700 | 1718 | 8.178964 | TGACATTGTGTAAACAGTTTGTACTTC | 58.821 | 33.333 | 8.93 | 4.70 | 30.26 | 3.01 |
1772 | 1941 | 9.791820 | CATATCTTGCTTGTCATGTCAAAATTA | 57.208 | 29.630 | 6.82 | 0.00 | 0.00 | 1.40 |
1778 | 1947 | 5.529800 | CCATCATATCTTGCTTGTCATGTCA | 59.470 | 40.000 | 0.00 | 0.00 | 0.00 | 3.58 |
1785 | 1954 | 3.572682 | CCATGCCATCATATCTTGCTTGT | 59.427 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
1845 | 2014 | 6.418946 | TGATGTGTTACATTTGGCCACTATA | 58.581 | 36.000 | 3.88 | 0.00 | 39.27 | 1.31 |
1852 | 2021 | 6.843069 | AAAAACTGATGTGTTACATTTGGC | 57.157 | 33.333 | 0.00 | 0.00 | 39.27 | 4.52 |
1882 | 2051 | 6.890268 | AGGCTAAAAATAGAACAGGGGTTTAG | 59.110 | 38.462 | 0.00 | 0.00 | 37.36 | 1.85 |
1967 | 2144 | 9.921637 | TGTATGACATTTTGGGAGTTTAAATTC | 57.078 | 29.630 | 2.22 | 2.22 | 0.00 | 2.17 |
1978 | 2155 | 7.825681 | TGTTCACTAATGTATGACATTTTGGG | 58.174 | 34.615 | 9.92 | 5.76 | 45.80 | 4.12 |
2047 | 3354 | 5.105351 | GCAGGTTTCCTAAAATGGTGCTAAT | 60.105 | 40.000 | 0.00 | 0.00 | 29.64 | 1.73 |
2062 | 3369 | 1.104577 | TGGGAACAACGCAGGTTTCC | 61.105 | 55.000 | 5.12 | 5.12 | 43.11 | 3.13 |
2080 | 3387 | 0.597568 | TTTTCCTTGTCGGCATGCTG | 59.402 | 50.000 | 21.02 | 21.02 | 0.00 | 4.41 |
2081 | 3388 | 1.000274 | GTTTTTCCTTGTCGGCATGCT | 60.000 | 47.619 | 18.92 | 0.00 | 0.00 | 3.79 |
2082 | 3389 | 1.269517 | TGTTTTTCCTTGTCGGCATGC | 60.270 | 47.619 | 9.90 | 9.90 | 0.00 | 4.06 |
2084 | 3391 | 2.028130 | TGTGTTTTTCCTTGTCGGCAT | 58.972 | 42.857 | 0.00 | 0.00 | 0.00 | 4.40 |
2085 | 3392 | 1.403679 | CTGTGTTTTTCCTTGTCGGCA | 59.596 | 47.619 | 0.00 | 0.00 | 0.00 | 5.69 |
2086 | 3393 | 1.864029 | GCTGTGTTTTTCCTTGTCGGC | 60.864 | 52.381 | 0.00 | 0.00 | 0.00 | 5.54 |
2087 | 3394 | 1.403679 | TGCTGTGTTTTTCCTTGTCGG | 59.596 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
2088 | 3395 | 2.842208 | TGCTGTGTTTTTCCTTGTCG | 57.158 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2089 | 3396 | 3.552890 | GGGATGCTGTGTTTTTCCTTGTC | 60.553 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
2109 | 3416 | 3.496131 | CGGCGGTTCATTGTCGGG | 61.496 | 66.667 | 0.00 | 0.00 | 0.00 | 5.14 |
2158 | 3465 | 6.517864 | GCTCCCCTTTATGATGAATGGATTTG | 60.518 | 42.308 | 0.00 | 0.00 | 0.00 | 2.32 |
2232 | 3540 | 4.320202 | GCGTCACCTTTGCTCTTGAAAATA | 60.320 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
2378 | 3689 | 3.203487 | ACCCACTTGTTCTTCAGGGTTTA | 59.797 | 43.478 | 0.00 | 0.00 | 46.99 | 2.01 |
2430 | 3741 | 1.414550 | TCACACGAGACCCAAACATCA | 59.585 | 47.619 | 0.00 | 0.00 | 0.00 | 3.07 |
2433 | 3744 | 3.372795 | GTCACACGAGACCCAAACA | 57.627 | 52.632 | 0.00 | 0.00 | 32.36 | 2.83 |
2515 | 3826 | 9.549078 | TGTGTTACATTTAGTGAGTGTGAATTA | 57.451 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2609 | 3920 | 7.357303 | GCTATAGTTAGAGCTGAGACTTACAC | 58.643 | 42.308 | 0.00 | 0.00 | 37.54 | 2.90 |
2683 | 3994 | 0.821711 | TTCCTTTTGGTGCCGGACAG | 60.822 | 55.000 | 5.05 | 0.00 | 41.38 | 3.51 |
2713 | 4024 | 1.017177 | TAGCGGTTCATTGTCGGCAC | 61.017 | 55.000 | 0.00 | 0.00 | 33.44 | 5.01 |
2847 | 4158 | 0.746204 | TCAGTTGCGTCACCTTTGCA | 60.746 | 50.000 | 0.00 | 0.00 | 36.72 | 4.08 |
3020 | 4331 | 2.478894 | ACGTCAGCAAATCGTTAACCTG | 59.521 | 45.455 | 0.00 | 0.66 | 34.07 | 4.00 |
3088 | 4399 | 1.273606 | ACGACTCAGATCCACCTGTTG | 59.726 | 52.381 | 0.00 | 0.00 | 35.71 | 3.33 |
3090 | 4401 | 2.509166 | TACGACTCAGATCCACCTGT | 57.491 | 50.000 | 0.00 | 0.00 | 35.71 | 4.00 |
3140 | 4451 | 9.571816 | AAATCTCTCTTTTCATTTCTTGAGAGT | 57.428 | 29.630 | 14.73 | 0.00 | 44.40 | 3.24 |
3186 | 4497 | 2.614983 | TGAGTTTTTACGTTGGCTCACC | 59.385 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
3187 | 4498 | 3.848554 | GCTGAGTTTTTACGTTGGCTCAC | 60.849 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
3189 | 4500 | 2.350484 | GGCTGAGTTTTTACGTTGGCTC | 60.350 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
3190 | 4501 | 1.607148 | GGCTGAGTTTTTACGTTGGCT | 59.393 | 47.619 | 0.00 | 0.00 | 0.00 | 4.75 |
3191 | 4502 | 1.335496 | TGGCTGAGTTTTTACGTTGGC | 59.665 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
3192 | 4503 | 2.616842 | AGTGGCTGAGTTTTTACGTTGG | 59.383 | 45.455 | 0.00 | 0.00 | 0.00 | 3.77 |
3193 | 4504 | 3.560068 | AGAGTGGCTGAGTTTTTACGTTG | 59.440 | 43.478 | 0.00 | 0.00 | 0.00 | 4.10 |
3194 | 4505 | 3.805207 | AGAGTGGCTGAGTTTTTACGTT | 58.195 | 40.909 | 0.00 | 0.00 | 0.00 | 3.99 |
3195 | 4506 | 3.470645 | AGAGTGGCTGAGTTTTTACGT | 57.529 | 42.857 | 0.00 | 0.00 | 0.00 | 3.57 |
3196 | 4507 | 5.163854 | CCATAAGAGTGGCTGAGTTTTTACG | 60.164 | 44.000 | 0.00 | 0.00 | 31.43 | 3.18 |
3197 | 4508 | 5.938125 | TCCATAAGAGTGGCTGAGTTTTTAC | 59.062 | 40.000 | 0.00 | 0.00 | 39.19 | 2.01 |
3198 | 4509 | 6.013725 | TCTCCATAAGAGTGGCTGAGTTTTTA | 60.014 | 38.462 | 0.00 | 0.00 | 43.71 | 1.52 |
3199 | 4510 | 4.985538 | TCCATAAGAGTGGCTGAGTTTTT | 58.014 | 39.130 | 0.00 | 0.00 | 39.19 | 1.94 |
3200 | 4511 | 4.287067 | TCTCCATAAGAGTGGCTGAGTTTT | 59.713 | 41.667 | 0.00 | 0.00 | 43.71 | 2.43 |
3201 | 4512 | 3.840666 | TCTCCATAAGAGTGGCTGAGTTT | 59.159 | 43.478 | 0.00 | 0.00 | 43.71 | 2.66 |
3202 | 4513 | 3.445008 | TCTCCATAAGAGTGGCTGAGTT | 58.555 | 45.455 | 0.00 | 0.00 | 43.71 | 3.01 |
3203 | 4514 | 3.107402 | TCTCCATAAGAGTGGCTGAGT | 57.893 | 47.619 | 0.00 | 0.00 | 43.71 | 3.41 |
3204 | 4515 | 3.640498 | TCATCTCCATAAGAGTGGCTGAG | 59.360 | 47.826 | 0.00 | 0.00 | 43.71 | 3.35 |
3205 | 4516 | 3.646534 | TCATCTCCATAAGAGTGGCTGA | 58.353 | 45.455 | 0.00 | 0.00 | 43.71 | 4.26 |
3206 | 4517 | 4.412796 | TTCATCTCCATAAGAGTGGCTG | 57.587 | 45.455 | 0.00 | 0.00 | 43.71 | 4.85 |
3207 | 4518 | 4.384647 | GGTTTCATCTCCATAAGAGTGGCT | 60.385 | 45.833 | 0.00 | 0.00 | 43.71 | 4.75 |
3208 | 4519 | 3.879892 | GGTTTCATCTCCATAAGAGTGGC | 59.120 | 47.826 | 0.00 | 0.00 | 43.71 | 5.01 |
3209 | 4520 | 4.080356 | TGGGTTTCATCTCCATAAGAGTGG | 60.080 | 45.833 | 0.00 | 0.00 | 43.71 | 4.00 |
3210 | 4521 | 5.102953 | TGGGTTTCATCTCCATAAGAGTG | 57.897 | 43.478 | 0.00 | 0.00 | 43.71 | 3.51 |
3211 | 4522 | 5.779241 | TTGGGTTTCATCTCCATAAGAGT | 57.221 | 39.130 | 0.00 | 0.00 | 43.71 | 3.24 |
3212 | 4523 | 6.886459 | TCTTTTGGGTTTCATCTCCATAAGAG | 59.114 | 38.462 | 9.33 | 0.00 | 40.80 | 2.85 |
3213 | 4524 | 6.789268 | TCTTTTGGGTTTCATCTCCATAAGA | 58.211 | 36.000 | 9.33 | 9.33 | 42.22 | 2.10 |
3214 | 4525 | 7.651027 | ATCTTTTGGGTTTCATCTCCATAAG | 57.349 | 36.000 | 0.00 | 0.00 | 39.39 | 1.73 |
3215 | 4526 | 8.434589 | AAATCTTTTGGGTTTCATCTCCATAA | 57.565 | 30.769 | 0.00 | 0.00 | 0.00 | 1.90 |
3216 | 4527 | 8.434589 | AAAATCTTTTGGGTTTCATCTCCATA | 57.565 | 30.769 | 0.00 | 0.00 | 0.00 | 2.74 |
3217 | 4528 | 6.940430 | AAATCTTTTGGGTTTCATCTCCAT | 57.060 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
3218 | 4529 | 6.516527 | CGAAAATCTTTTGGGTTTCATCTCCA | 60.517 | 38.462 | 0.00 | 0.00 | 31.66 | 3.86 |
3219 | 4530 | 5.863935 | CGAAAATCTTTTGGGTTTCATCTCC | 59.136 | 40.000 | 0.00 | 0.00 | 31.66 | 3.71 |
3220 | 4531 | 6.447162 | ACGAAAATCTTTTGGGTTTCATCTC | 58.553 | 36.000 | 0.00 | 0.00 | 31.27 | 2.75 |
3221 | 4532 | 6.405278 | ACGAAAATCTTTTGGGTTTCATCT | 57.595 | 33.333 | 0.00 | 0.00 | 31.27 | 2.90 |
3222 | 4533 | 6.073819 | CCAACGAAAATCTTTTGGGTTTCATC | 60.074 | 38.462 | 0.00 | 0.00 | 35.76 | 2.92 |
3223 | 4534 | 5.757808 | CCAACGAAAATCTTTTGGGTTTCAT | 59.242 | 36.000 | 0.00 | 0.00 | 35.76 | 2.57 |
3224 | 4535 | 5.112686 | CCAACGAAAATCTTTTGGGTTTCA | 58.887 | 37.500 | 0.00 | 0.00 | 35.76 | 2.69 |
3225 | 4536 | 5.651172 | CCAACGAAAATCTTTTGGGTTTC | 57.349 | 39.130 | 0.00 | 0.00 | 35.76 | 2.78 |
3230 | 4541 | 2.224161 | TGCCCCAACGAAAATCTTTTGG | 60.224 | 45.455 | 0.00 | 0.00 | 38.62 | 3.28 |
3231 | 4542 | 3.104843 | TGCCCCAACGAAAATCTTTTG | 57.895 | 42.857 | 0.00 | 0.00 | 0.00 | 2.44 |
3232 | 4543 | 5.234752 | GTTATGCCCCAACGAAAATCTTTT | 58.765 | 37.500 | 0.00 | 0.00 | 0.00 | 2.27 |
3233 | 4544 | 4.322424 | GGTTATGCCCCAACGAAAATCTTT | 60.322 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
3234 | 4545 | 3.194755 | GGTTATGCCCCAACGAAAATCTT | 59.805 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
3235 | 4546 | 2.758423 | GGTTATGCCCCAACGAAAATCT | 59.242 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
3236 | 4547 | 3.159353 | GGTTATGCCCCAACGAAAATC | 57.841 | 47.619 | 0.00 | 0.00 | 0.00 | 2.17 |
3248 | 4559 | 0.530870 | GTCGCTGAGAGGGTTATGCC | 60.531 | 60.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3249 | 4560 | 0.872021 | CGTCGCTGAGAGGGTTATGC | 60.872 | 60.000 | 0.00 | 0.00 | 0.00 | 3.14 |
3250 | 4561 | 0.872021 | GCGTCGCTGAGAGGGTTATG | 60.872 | 60.000 | 10.68 | 0.00 | 35.42 | 1.90 |
3251 | 4562 | 1.437986 | GCGTCGCTGAGAGGGTTAT | 59.562 | 57.895 | 10.68 | 0.00 | 35.42 | 1.89 |
3252 | 4563 | 2.882876 | GCGTCGCTGAGAGGGTTA | 59.117 | 61.111 | 10.68 | 0.00 | 35.42 | 2.85 |
3253 | 4564 | 4.421479 | CGCGTCGCTGAGAGGGTT | 62.421 | 66.667 | 16.36 | 0.00 | 35.42 | 4.11 |
3265 | 4576 | 3.849953 | GTTCCGATGTGGCGCGTC | 61.850 | 66.667 | 2.29 | 2.29 | 37.80 | 5.19 |
3278 | 4589 | 4.653888 | CCACCACACCCGGGTTCC | 62.654 | 72.222 | 27.83 | 0.00 | 36.19 | 3.62 |
3282 | 4593 | 4.904590 | TTTGCCACCACACCCGGG | 62.905 | 66.667 | 22.25 | 22.25 | 0.00 | 5.73 |
3283 | 4594 | 2.600173 | ATTTGCCACCACACCCGG | 60.600 | 61.111 | 0.00 | 0.00 | 0.00 | 5.73 |
3284 | 4595 | 2.650196 | CATTTGCCACCACACCCG | 59.350 | 61.111 | 0.00 | 0.00 | 0.00 | 5.28 |
3285 | 4596 | 2.582493 | CCCATTTGCCACCACACCC | 61.582 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
3286 | 4597 | 3.059099 | CCCATTTGCCACCACACC | 58.941 | 61.111 | 0.00 | 0.00 | 0.00 | 4.16 |
3287 | 4598 | 2.037620 | TTGCCCATTTGCCACCACAC | 62.038 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
3288 | 4599 | 1.756408 | CTTGCCCATTTGCCACCACA | 61.756 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
3289 | 4600 | 1.004679 | CTTGCCCATTTGCCACCAC | 60.005 | 57.895 | 0.00 | 0.00 | 0.00 | 4.16 |
3290 | 4601 | 2.215625 | CCTTGCCCATTTGCCACCA | 61.216 | 57.895 | 0.00 | 0.00 | 0.00 | 4.17 |
3291 | 4602 | 2.664398 | CCTTGCCCATTTGCCACC | 59.336 | 61.111 | 0.00 | 0.00 | 0.00 | 4.61 |
3292 | 4603 | 1.912763 | TCCCTTGCCCATTTGCCAC | 60.913 | 57.895 | 0.00 | 0.00 | 0.00 | 5.01 |
3293 | 4604 | 1.912763 | GTCCCTTGCCCATTTGCCA | 60.913 | 57.895 | 0.00 | 0.00 | 0.00 | 4.92 |
3294 | 4605 | 2.981302 | GTCCCTTGCCCATTTGCC | 59.019 | 61.111 | 0.00 | 0.00 | 0.00 | 4.52 |
3295 | 4606 | 2.573340 | CGTCCCTTGCCCATTTGC | 59.427 | 61.111 | 0.00 | 0.00 | 0.00 | 3.68 |
3296 | 4607 | 2.350458 | CCCGTCCCTTGCCCATTTG | 61.350 | 63.158 | 0.00 | 0.00 | 0.00 | 2.32 |
3297 | 4608 | 2.037208 | CCCGTCCCTTGCCCATTT | 59.963 | 61.111 | 0.00 | 0.00 | 0.00 | 2.32 |
3298 | 4609 | 4.759205 | GCCCGTCCCTTGCCCATT | 62.759 | 66.667 | 0.00 | 0.00 | 0.00 | 3.16 |
3303 | 4614 | 3.645268 | ATCTTGGCCCGTCCCTTGC | 62.645 | 63.158 | 0.00 | 0.00 | 0.00 | 4.01 |
3304 | 4615 | 1.452108 | GATCTTGGCCCGTCCCTTG | 60.452 | 63.158 | 0.00 | 0.00 | 0.00 | 3.61 |
3305 | 4616 | 2.680370 | GGATCTTGGCCCGTCCCTT | 61.680 | 63.158 | 0.00 | 0.00 | 0.00 | 3.95 |
3306 | 4617 | 3.090532 | GGATCTTGGCCCGTCCCT | 61.091 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
3307 | 4618 | 4.547367 | CGGATCTTGGCCCGTCCC | 62.547 | 72.222 | 0.00 | 0.00 | 40.78 | 4.46 |
3308 | 4619 | 3.447025 | CTCGGATCTTGGCCCGTCC | 62.447 | 68.421 | 0.00 | 1.11 | 45.48 | 4.79 |
3309 | 4620 | 2.107141 | CTCGGATCTTGGCCCGTC | 59.893 | 66.667 | 0.00 | 0.00 | 45.48 | 4.79 |
3310 | 4621 | 2.363795 | TCTCGGATCTTGGCCCGT | 60.364 | 61.111 | 0.00 | 0.00 | 45.48 | 5.28 |
3311 | 4622 | 2.081425 | CTCTCTCGGATCTTGGCCCG | 62.081 | 65.000 | 0.00 | 0.00 | 46.57 | 6.13 |
3312 | 4623 | 1.745264 | CTCTCTCGGATCTTGGCCC | 59.255 | 63.158 | 0.00 | 0.00 | 0.00 | 5.80 |
3423 | 4738 | 3.007182 | CCCCATTGAACAGCTTGTCAAAT | 59.993 | 43.478 | 11.79 | 3.03 | 0.00 | 2.32 |
3514 | 4829 | 0.898789 | TTGACCTCGGACTCCTGGAC | 60.899 | 60.000 | 10.05 | 5.58 | 0.00 | 4.02 |
3525 | 4840 | 2.762535 | TTAAAGCCTCCTTGACCTCG | 57.237 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3564 | 4880 | 1.294041 | TACAATCAGGGCCCATCACA | 58.706 | 50.000 | 27.56 | 2.01 | 0.00 | 3.58 |
3592 | 4908 | 1.550130 | CCGAGGCCTTTCCACACCTA | 61.550 | 60.000 | 6.77 | 0.00 | 37.29 | 3.08 |
3606 | 4922 | 0.811915 | CTATCGCTATGTCCCCGAGG | 59.188 | 60.000 | 0.00 | 0.00 | 34.21 | 4.63 |
3703 | 5023 | 3.140144 | ACATCCCCCTTGTTCTTGAAGAA | 59.860 | 43.478 | 3.02 | 3.02 | 0.00 | 2.52 |
3729 | 5049 | 7.605410 | AATTCCACGGTAATTAGTACAACTG | 57.395 | 36.000 | 0.00 | 0.00 | 34.01 | 3.16 |
3779 | 5099 | 3.622163 | GTGCTCAATGACTCTCTTCCATG | 59.378 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
3784 | 5104 | 1.674221 | GCGGTGCTCAATGACTCTCTT | 60.674 | 52.381 | 0.00 | 0.00 | 0.00 | 2.85 |
3910 | 5231 | 5.337009 | CCATATGCAAGTCCTTCTTTTGCTT | 60.337 | 40.000 | 9.47 | 6.13 | 45.53 | 3.91 |
4151 | 5473 | 0.325933 | TGACCTCAGCCATCACCAAG | 59.674 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
4162 | 5484 | 5.453903 | CCTTGTATATCCCTTGTGACCTCAG | 60.454 | 48.000 | 0.00 | 0.00 | 0.00 | 3.35 |
4235 | 5557 | 5.839063 | CCTATTTACCCCTGTCTGACTATCA | 59.161 | 44.000 | 9.51 | 0.00 | 0.00 | 2.15 |
4345 | 5669 | 5.195146 | TCCTCCTCCTCACACCTAATAGTAA | 59.805 | 44.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4351 | 5675 | 1.007238 | CCTCCTCCTCCTCACACCTAA | 59.993 | 57.143 | 0.00 | 0.00 | 0.00 | 2.69 |
4470 | 5801 | 5.530915 | CACTTAATCCATCCGGCTTTGATTA | 59.469 | 40.000 | 0.00 | 4.10 | 0.00 | 1.75 |
4567 | 5898 | 0.816018 | ACAACATTGCGGGTCGAACA | 60.816 | 50.000 | 1.31 | 0.00 | 0.00 | 3.18 |
4639 | 5970 | 0.459899 | TCAACATACGCATCTCCGCT | 59.540 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
4783 | 6114 | 2.985847 | GCTTTTGGAGGCCTGCGT | 60.986 | 61.111 | 20.39 | 0.00 | 0.00 | 5.24 |
4796 | 6127 | 2.772739 | CGCTATGCAGTGGAGCTTT | 58.227 | 52.632 | 9.99 | 0.00 | 33.91 | 3.51 |
4860 | 6191 | 3.588842 | AGACTCCTCCCATGTCAAATTCA | 59.411 | 43.478 | 0.00 | 0.00 | 33.56 | 2.57 |
4888 | 6219 | 5.654650 | TCCTTCAGGTCTCTCTTAACATCTC | 59.345 | 44.000 | 0.00 | 0.00 | 36.34 | 2.75 |
4889 | 6220 | 5.584913 | TCCTTCAGGTCTCTCTTAACATCT | 58.415 | 41.667 | 0.00 | 0.00 | 36.34 | 2.90 |
4890 | 6221 | 5.923733 | TCCTTCAGGTCTCTCTTAACATC | 57.076 | 43.478 | 0.00 | 0.00 | 36.34 | 3.06 |
4891 | 6222 | 6.352565 | CCAATCCTTCAGGTCTCTCTTAACAT | 60.353 | 42.308 | 0.00 | 0.00 | 36.34 | 2.71 |
5039 | 6372 | 5.789521 | ACAACAACAACAAAGCCTTTAGTT | 58.210 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
5134 | 6468 | 2.226962 | AAGTCCTTGCCATGCAGATT | 57.773 | 45.000 | 0.00 | 0.00 | 40.61 | 2.40 |
5141 | 6475 | 2.375174 | TGGTCTGTAAAGTCCTTGCCAT | 59.625 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
5161 | 6495 | 3.896648 | AGCCGTTTGTTGATAACAGTG | 57.103 | 42.857 | 0.00 | 0.00 | 43.27 | 3.66 |
5168 | 6502 | 4.336993 | TGTTGAGTAAAGCCGTTTGTTGAT | 59.663 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
5252 | 6586 | 4.374399 | CTTGAAGCAAGCAAAAGAACCAT | 58.626 | 39.130 | 0.00 | 0.00 | 34.63 | 3.55 |
5284 | 6618 | 1.071471 | AGTCCGAACAAGGCACTGG | 59.929 | 57.895 | 0.00 | 0.00 | 40.86 | 4.00 |
5344 | 6678 | 0.250295 | CCCTCTTGGTGACGAAGCAA | 60.250 | 55.000 | 2.21 | 0.00 | 43.85 | 3.91 |
5542 | 6876 | 3.092301 | GGGTCAGGGGTATACCGTATAC | 58.908 | 54.545 | 15.80 | 17.23 | 41.60 | 1.47 |
5543 | 6877 | 2.721355 | TGGGTCAGGGGTATACCGTATA | 59.279 | 50.000 | 15.80 | 0.00 | 41.60 | 1.47 |
5544 | 6878 | 1.504660 | TGGGTCAGGGGTATACCGTAT | 59.495 | 52.381 | 15.80 | 1.13 | 41.60 | 3.06 |
5545 | 6879 | 0.932955 | TGGGTCAGGGGTATACCGTA | 59.067 | 55.000 | 15.80 | 0.00 | 41.60 | 4.02 |
5546 | 6880 | 0.043032 | TTGGGTCAGGGGTATACCGT | 59.957 | 55.000 | 15.80 | 2.64 | 41.60 | 4.83 |
5547 | 6881 | 0.466963 | GTTGGGTCAGGGGTATACCG | 59.533 | 60.000 | 15.80 | 2.40 | 41.60 | 4.02 |
5634 | 7153 | 4.297299 | CACACTTTGTGCATTCTTGTCT | 57.703 | 40.909 | 0.00 | 0.00 | 41.89 | 3.41 |
5756 | 7275 | 2.572290 | GCATACAAGTCCACCCATACC | 58.428 | 52.381 | 0.00 | 0.00 | 0.00 | 2.73 |
5789 | 7308 | 1.000060 | GCTTGCCAAATCAACTGCAGA | 60.000 | 47.619 | 23.35 | 0.00 | 34.81 | 4.26 |
5861 | 7380 | 5.234329 | CCTATTGTACATCGGCAAACAGTAG | 59.766 | 44.000 | 0.00 | 0.00 | 34.03 | 2.57 |
5862 | 7381 | 5.105269 | TCCTATTGTACATCGGCAAACAGTA | 60.105 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
6250 | 7769 | 8.391106 | CACAAGCATACTCACTAAAGTAAATCC | 58.609 | 37.037 | 0.00 | 0.00 | 35.47 | 3.01 |
6588 | 8107 | 5.193679 | AGGGATCCTATTTTTCAAACCTCG | 58.806 | 41.667 | 12.58 | 0.00 | 28.47 | 4.63 |
6880 | 8400 | 0.396435 | AGAAAGCACGGTCATGGACA | 59.604 | 50.000 | 0.00 | 0.00 | 33.68 | 4.02 |
6986 | 8508 | 3.960102 | AGTGGTCTGAATTTTTCTTGCCA | 59.040 | 39.130 | 0.00 | 0.00 | 0.00 | 4.92 |
7209 | 8756 | 7.404671 | AAAACCGAGTGCATATTTTAGGAAT | 57.595 | 32.000 | 0.00 | 0.00 | 0.00 | 3.01 |
7294 | 8848 | 0.116940 | ATGCCCCATGGTTCCTGTTT | 59.883 | 50.000 | 11.73 | 0.00 | 0.00 | 2.83 |
7315 | 8869 | 3.833732 | AGGGGAAAGAGTTGAGAAAACC | 58.166 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
7519 | 9073 | 0.521867 | CACTTGCGGCATGATTCACG | 60.522 | 55.000 | 21.01 | 0.00 | 0.00 | 4.35 |
7854 | 9534 | 9.750125 | CATCTATAACACAACAGCTCTATACAA | 57.250 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
7906 | 9586 | 2.535984 | GCAGCACGTATAGACACACATC | 59.464 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
7967 | 9649 | 3.976701 | ATGGCCTGCTTTCCGGTCG | 62.977 | 63.158 | 3.32 | 0.00 | 0.00 | 4.79 |
7971 | 9653 | 3.912899 | AAAAATGGCCTGCTTTCCG | 57.087 | 47.368 | 3.32 | 0.00 | 0.00 | 4.30 |
8061 | 10304 | 1.168714 | CAACTAGGCAAACAGCTCCC | 58.831 | 55.000 | 0.00 | 0.00 | 44.79 | 4.30 |
8081 | 10324 | 1.979155 | TCTCGTGACAGCCTCCAGG | 60.979 | 63.158 | 0.00 | 0.00 | 38.53 | 4.45 |
8092 | 10335 | 2.131067 | TGGTGCCACTGTCTCGTGA | 61.131 | 57.895 | 0.00 | 0.00 | 37.06 | 4.35 |
8093 | 10336 | 1.956170 | GTGGTGCCACTGTCTCGTG | 60.956 | 63.158 | 13.68 | 0.00 | 43.12 | 4.35 |
8128 | 10371 | 2.472695 | TGTATCCACAGGTGACTTGC | 57.527 | 50.000 | 0.00 | 0.00 | 40.21 | 4.01 |
8138 | 10381 | 3.517500 | TCATGTTGCCTACTGTATCCACA | 59.482 | 43.478 | 0.00 | 0.00 | 0.00 | 4.17 |
8190 | 10579 | 8.195436 | TCTAAGACAACTAATTTAGGACGGATG | 58.805 | 37.037 | 8.26 | 0.90 | 0.00 | 3.51 |
8250 | 10665 | 4.080413 | ACCTACAGTACTACCTCCTCTGTC | 60.080 | 50.000 | 0.00 | 0.00 | 39.54 | 3.51 |
8252 | 10667 | 4.164604 | AGACCTACAGTACTACCTCCTCTG | 59.835 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
8253 | 10668 | 4.164604 | CAGACCTACAGTACTACCTCCTCT | 59.835 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
8287 | 10851 | 9.522804 | ACAGACGAGTAGAAATCATAAGAATTC | 57.477 | 33.333 | 0.00 | 0.00 | 34.54 | 2.17 |
8291 | 10856 | 8.953313 | TGTAACAGACGAGTAGAAATCATAAGA | 58.047 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
8342 | 10907 | 0.519077 | CTTTCTTGCCGTGCTTCTCC | 59.481 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.