Multiple sequence alignment - TraesCS3D01G354700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G354700 chr3D 100.000 5869 0 0 1 5869 465182841 465176973 0.000000e+00 10839.0
1 TraesCS3D01G354700 chr3D 97.007 1069 31 1 4802 5869 516401315 516402383 0.000000e+00 1796.0
2 TraesCS3D01G354700 chr1D 98.966 1064 10 1 4807 5869 487305029 487306092 0.000000e+00 1903.0
3 TraesCS3D01G354700 chr1D 98.692 1070 11 2 4801 5869 30695959 30697026 0.000000e+00 1895.0
4 TraesCS3D01G354700 chr1D 85.124 121 18 0 13 133 479783686 479783806 2.220000e-24 124.0
5 TraesCS3D01G354700 chr3A 89.819 1493 72 31 562 2033 608483613 608482180 0.000000e+00 1842.0
6 TraesCS3D01G354700 chr3A 88.889 1152 96 20 2699 3822 608481628 608480481 0.000000e+00 1389.0
7 TraesCS3D01G354700 chr3A 94.847 621 26 5 4006 4621 608480491 608479872 0.000000e+00 965.0
8 TraesCS3D01G354700 chr3A 94.495 218 12 0 1 218 608484256 608484039 2.620000e-88 337.0
9 TraesCS3D01G354700 chr3A 85.409 281 15 10 203 480 608484024 608483767 9.690000e-68 268.0
10 TraesCS3D01G354700 chr3A 86.996 223 19 6 2433 2650 608481854 608481637 5.880000e-60 243.0
11 TraesCS3D01G354700 chr2B 97.194 1069 29 1 4802 5869 433707 432639 0.000000e+00 1807.0
12 TraesCS3D01G354700 chr2B 90.667 150 9 2 3827 3972 484111417 484111269 1.670000e-45 195.0
13 TraesCS3D01G354700 chr7A 95.884 1069 43 1 4802 5869 303749878 303750946 0.000000e+00 1729.0
14 TraesCS3D01G354700 chr7A 87.027 185 23 1 3822 4006 89072131 89072314 2.140000e-49 207.0
15 TraesCS3D01G354700 chr7A 85.124 121 18 0 13 133 699249899 699250019 2.220000e-24 124.0
16 TraesCS3D01G354700 chr7A 84.426 122 18 1 13 133 711305711 711305590 1.030000e-22 119.0
17 TraesCS3D01G354700 chr3B 92.301 1208 57 15 2134 3333 618691607 618690428 0.000000e+00 1683.0
18 TraesCS3D01G354700 chr3B 88.889 1089 58 25 821 1903 618692744 618691713 0.000000e+00 1282.0
19 TraesCS3D01G354700 chr3B 93.423 821 23 13 4006 4799 618688546 618687730 0.000000e+00 1188.0
20 TraesCS3D01G354700 chr3B 91.093 494 34 3 3330 3822 618689020 618688536 0.000000e+00 660.0
21 TraesCS3D01G354700 chr3B 87.834 337 33 5 145 480 618743402 618743073 7.130000e-104 388.0
22 TraesCS3D01G354700 chr3B 95.745 94 4 0 1932 2025 618691714 618691621 1.020000e-32 152.0
23 TraesCS3D01G354700 chr3B 88.298 94 10 1 720 812 618740221 618740128 1.730000e-20 111.0
24 TraesCS3D01G354700 chr6A 92.991 1070 39 12 4801 5869 276501382 276500348 0.000000e+00 1528.0
25 TraesCS3D01G354700 chr6A 76.316 418 70 21 1810 2221 94214117 94213723 4.640000e-46 196.0
26 TraesCS3D01G354700 chr4B 91.130 1071 59 16 4801 5869 657005888 657004852 0.000000e+00 1419.0
27 TraesCS3D01G354700 chr4B 100.000 30 0 0 2039 2068 434655160 434655189 8.220000e-04 56.5
28 TraesCS3D01G354700 chr1A 95.550 764 33 1 4802 5564 347416821 347417584 0.000000e+00 1221.0
29 TraesCS3D01G354700 chr4A 87.500 1096 85 17 4802 5869 633927198 633928269 0.000000e+00 1218.0
30 TraesCS3D01G354700 chr4A 90.761 184 11 3 3822 4004 606762046 606762224 2.110000e-59 241.0
31 TraesCS3D01G354700 chr1B 94.177 790 40 6 5081 5869 40300712 40301496 0.000000e+00 1199.0
32 TraesCS3D01G354700 chr1B 90.556 180 10 2 3827 4006 302244393 302244565 1.270000e-56 231.0
33 TraesCS3D01G354700 chr2D 91.489 188 9 3 3821 4006 23725523 23725341 9.760000e-63 252.0
34 TraesCS3D01G354700 chr2D 91.228 171 9 3 3837 4006 523014725 523014890 1.650000e-55 228.0
35 TraesCS3D01G354700 chr2D 86.730 211 17 6 3809 4015 561236271 561236068 2.130000e-54 224.0
36 TraesCS3D01G354700 chr2D 89.011 182 15 3 3823 4004 16169913 16169737 2.750000e-53 220.0
37 TraesCS3D01G354700 chr7D 90.811 185 12 3 3822 4006 368587200 368587379 5.880000e-60 243.0
38 TraesCS3D01G354700 chr4D 88.268 179 14 5 3824 4001 473824100 473824272 2.140000e-49 207.0
39 TraesCS3D01G354700 chr6D 86.486 185 15 7 3824 4006 436295403 436295579 1.670000e-45 195.0
40 TraesCS3D01G354700 chr5D 90.435 115 11 0 3822 3936 63413271 63413157 1.020000e-32 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G354700 chr3D 465176973 465182841 5868 True 10839.000000 10839 100.000000 1 5869 1 chr3D.!!$R1 5868
1 TraesCS3D01G354700 chr3D 516401315 516402383 1068 False 1796.000000 1796 97.007000 4802 5869 1 chr3D.!!$F1 1067
2 TraesCS3D01G354700 chr1D 487305029 487306092 1063 False 1903.000000 1903 98.966000 4807 5869 1 chr1D.!!$F3 1062
3 TraesCS3D01G354700 chr1D 30695959 30697026 1067 False 1895.000000 1895 98.692000 4801 5869 1 chr1D.!!$F1 1068
4 TraesCS3D01G354700 chr3A 608479872 608484256 4384 True 840.666667 1842 90.075833 1 4621 6 chr3A.!!$R1 4620
5 TraesCS3D01G354700 chr2B 432639 433707 1068 True 1807.000000 1807 97.194000 4802 5869 1 chr2B.!!$R1 1067
6 TraesCS3D01G354700 chr7A 303749878 303750946 1068 False 1729.000000 1729 95.884000 4802 5869 1 chr7A.!!$F2 1067
7 TraesCS3D01G354700 chr3B 618687730 618692744 5014 True 993.000000 1683 92.290200 821 4799 5 chr3B.!!$R1 3978
8 TraesCS3D01G354700 chr3B 618740128 618743402 3274 True 249.500000 388 88.066000 145 812 2 chr3B.!!$R2 667
9 TraesCS3D01G354700 chr6A 276500348 276501382 1034 True 1528.000000 1528 92.991000 4801 5869 1 chr6A.!!$R2 1068
10 TraesCS3D01G354700 chr4B 657004852 657005888 1036 True 1419.000000 1419 91.130000 4801 5869 1 chr4B.!!$R1 1068
11 TraesCS3D01G354700 chr1A 347416821 347417584 763 False 1221.000000 1221 95.550000 4802 5564 1 chr1A.!!$F1 762
12 TraesCS3D01G354700 chr4A 633927198 633928269 1071 False 1218.000000 1218 87.500000 4802 5869 1 chr4A.!!$F2 1067
13 TraesCS3D01G354700 chr1B 40300712 40301496 784 False 1199.000000 1199 94.177000 5081 5869 1 chr1B.!!$F1 788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
917 3673 1.045407 TACGGAGACAACACAAGCCT 58.955 50.0 0.00 0.0 0.00 4.58 F
1925 4699 0.034896 AGCTTGAACCACGACGGATT 59.965 50.0 0.00 0.0 38.63 3.01 F
2509 5313 0.032678 CCACGGTAGATAGCAGCTGG 59.967 60.0 17.12 0.0 0.00 4.85 F
3353 7594 0.181587 TTTGTTGCTGGGAAGTCGGA 59.818 50.0 0.00 0.0 0.00 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2102 4881 0.106419 TGAAACTTTTCCCCGCCAGT 60.106 50.000 0.00 0.0 36.36 4.00 R
3030 5858 0.109919 TCGAGTTCGTGGATGTGTCG 60.110 55.000 1.07 0.0 40.80 4.35 R
3980 8227 0.175760 TGCTCCATCTACGAACAGCC 59.824 55.000 0.00 0.0 0.00 4.85 R
4949 9227 1.947456 ACTCTTGCAACGGTTCCTTTC 59.053 47.619 0.00 0.0 0.00 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 5.071519 AGGAAGATCAGTACAATCCTGATGG 59.928 44.000 7.58 0.00 46.84 3.51
62 63 3.956199 AGTACAATCCTGATGGCAATTGG 59.044 43.478 7.72 5.47 33.99 3.16
86 87 2.101917 CCAATTTCATCAGGTCCATGGC 59.898 50.000 6.96 1.78 0.00 4.40
234 265 4.093261 CCACGTTACCCTAATAAACAACCG 59.907 45.833 0.00 0.00 0.00 4.44
263 294 9.342308 GGATTATGTTGAGGATTAATCAAGTCA 57.658 33.333 17.07 12.66 37.35 3.41
364 395 2.665165 TGTGGAAAAGCATGTCCTTGT 58.335 42.857 0.00 0.00 34.77 3.16
383 414 6.828273 TCCTTGTTGAAAAGATGTCTCTTCAA 59.172 34.615 7.28 7.28 40.93 2.69
402 433 6.430925 TCTTCAAGGAAAGACATGTATGTTGG 59.569 38.462 0.00 0.00 41.95 3.77
409 440 6.016276 GGAAAGACATGTATGTTGGTGAAACT 60.016 38.462 0.00 0.00 41.95 2.66
412 443 7.615582 AGACATGTATGTTGGTGAAACTATG 57.384 36.000 0.00 0.00 41.95 2.23
452 484 6.071952 GGACATGTTACTTGGTGAAATGATGT 60.072 38.462 0.00 0.00 0.00 3.06
462 494 5.807909 TGGTGAAATGATGTCTCTTCATGA 58.192 37.500 0.00 0.00 34.14 3.07
485 517 8.696410 TGAAAAAGTATATTTGAAAATCCCGC 57.304 30.769 0.00 0.00 0.00 6.13
486 518 8.307483 TGAAAAAGTATATTTGAAAATCCCGCA 58.693 29.630 0.00 0.00 0.00 5.69
487 519 9.145865 GAAAAAGTATATTTGAAAATCCCGCAA 57.854 29.630 0.00 0.00 0.00 4.85
488 520 9.495572 AAAAAGTATATTTGAAAATCCCGCAAA 57.504 25.926 0.00 0.00 36.15 3.68
489 521 9.495572 AAAAGTATATTTGAAAATCCCGCAAAA 57.504 25.926 0.00 0.00 35.44 2.44
490 522 9.495572 AAAGTATATTTGAAAATCCCGCAAAAA 57.504 25.926 0.00 0.00 35.44 1.94
491 523 8.474006 AGTATATTTGAAAATCCCGCAAAAAC 57.526 30.769 0.00 0.00 35.44 2.43
492 524 8.091449 AGTATATTTGAAAATCCCGCAAAAACA 58.909 29.630 0.00 0.00 35.44 2.83
493 525 7.736447 ATATTTGAAAATCCCGCAAAAACAA 57.264 28.000 0.00 0.00 35.44 2.83
494 526 5.476752 TTTGAAAATCCCGCAAAAACAAG 57.523 34.783 0.00 0.00 0.00 3.16
495 527 4.130286 TGAAAATCCCGCAAAAACAAGT 57.870 36.364 0.00 0.00 0.00 3.16
496 528 5.263968 TGAAAATCCCGCAAAAACAAGTA 57.736 34.783 0.00 0.00 0.00 2.24
497 529 5.848406 TGAAAATCCCGCAAAAACAAGTAT 58.152 33.333 0.00 0.00 0.00 2.12
498 530 6.982852 TGAAAATCCCGCAAAAACAAGTATA 58.017 32.000 0.00 0.00 0.00 1.47
499 531 7.607250 TGAAAATCCCGCAAAAACAAGTATAT 58.393 30.769 0.00 0.00 0.00 0.86
500 532 8.091449 TGAAAATCCCGCAAAAACAAGTATATT 58.909 29.630 0.00 0.00 0.00 1.28
501 533 8.840833 AAAATCCCGCAAAAACAAGTATATTT 57.159 26.923 0.00 0.00 0.00 1.40
502 534 7.826260 AATCCCGCAAAAACAAGTATATTTG 57.174 32.000 6.44 6.44 36.19 2.32
557 589 7.938563 TTAACATGTTACAAAATTCAGCCAC 57.061 32.000 17.85 0.00 0.00 5.01
795 3547 4.742201 GTCGAGCAGCCGCCAAGA 62.742 66.667 0.00 0.00 39.83 3.02
888 3644 3.670311 CAGAATGCAGATTCCAGTTCG 57.330 47.619 0.00 0.00 39.14 3.95
913 3669 2.033372 TCCAGTACGGAGACAACACAA 58.967 47.619 0.00 0.00 39.64 3.33
917 3673 1.045407 TACGGAGACAACACAAGCCT 58.955 50.000 0.00 0.00 0.00 4.58
1032 3788 2.037901 GAGATGGGAGATGTGCTGAGA 58.962 52.381 0.00 0.00 0.00 3.27
1235 3997 4.389576 CAACAGCGGCGGCAGAAC 62.390 66.667 19.21 0.00 43.41 3.01
1341 4103 2.435059 GAGAAGGCGCTGTGGTCC 60.435 66.667 7.64 0.00 0.00 4.46
1398 4160 1.808411 ATTTGTAGGTGCACTCGTGG 58.192 50.000 17.98 0.00 0.00 4.94
1402 4164 1.835267 TAGGTGCACTCGTGGGTGT 60.835 57.895 17.98 0.00 39.21 4.16
1403 4165 1.812686 TAGGTGCACTCGTGGGTGTC 61.813 60.000 17.98 0.00 39.21 3.67
1404 4166 2.665185 GTGCACTCGTGGGTGTCC 60.665 66.667 10.32 0.00 39.21 4.02
1405 4167 4.293648 TGCACTCGTGGGTGTCCG 62.294 66.667 1.28 0.00 39.21 4.79
1412 4174 4.848685 GTGGGTGTCCGCGAATAT 57.151 55.556 8.23 0.00 33.43 1.28
1428 4190 3.896612 CGAATATTTTTGCGCTGATCGAG 59.103 43.478 9.73 0.00 41.67 4.04
1447 4209 1.702299 CGCTCCACGTTCGTTGATC 59.298 57.895 0.00 0.00 36.87 2.92
1448 4210 1.006825 CGCTCCACGTTCGTTGATCA 61.007 55.000 0.00 0.00 36.87 2.92
1449 4211 0.716108 GCTCCACGTTCGTTGATCAG 59.284 55.000 0.00 0.00 0.00 2.90
1450 4212 1.668919 GCTCCACGTTCGTTGATCAGA 60.669 52.381 0.00 0.00 0.00 3.27
1451 4213 2.254459 CTCCACGTTCGTTGATCAGAG 58.746 52.381 0.00 0.00 0.00 3.35
1452 4214 1.067846 TCCACGTTCGTTGATCAGAGG 60.068 52.381 0.00 0.00 0.00 3.69
1453 4215 1.067846 CCACGTTCGTTGATCAGAGGA 60.068 52.381 0.00 0.00 0.00 3.71
1454 4216 2.254459 CACGTTCGTTGATCAGAGGAG 58.746 52.381 0.00 0.00 0.00 3.69
1455 4217 1.202582 ACGTTCGTTGATCAGAGGAGG 59.797 52.381 0.00 0.00 0.00 4.30
1456 4218 1.646189 GTTCGTTGATCAGAGGAGGC 58.354 55.000 0.00 0.00 0.00 4.70
1460 4222 1.066573 CGTTGATCAGAGGAGGCAAGT 60.067 52.381 0.00 0.00 0.00 3.16
1466 4228 4.718774 TGATCAGAGGAGGCAAGTAATCTT 59.281 41.667 0.00 0.00 0.00 2.40
1550 4313 1.301716 CACACGACCAAGGTGAGGG 60.302 63.158 0.00 0.00 38.73 4.30
1659 4422 4.384247 GTGCAGTTGATCGATACATCTAGC 59.616 45.833 0.00 9.49 0.00 3.42
1766 4539 2.124024 ATCATGCATGCACCGGCT 60.124 55.556 25.37 3.10 41.91 5.52
1805 4579 7.113610 TGAATTTCCCCCATATGGATTGATA 57.886 36.000 24.00 11.13 37.39 2.15
1845 4619 4.176120 AGGCCATCCCTCAAATTTCTAG 57.824 45.455 5.01 0.00 41.21 2.43
1887 4661 5.394993 GGTTCGAGCCCTAATACAAACTACT 60.395 44.000 7.13 0.00 0.00 2.57
1925 4699 0.034896 AGCTTGAACCACGACGGATT 59.965 50.000 0.00 0.00 38.63 3.01
1937 4711 2.094390 ACGACGGATTACAAGCAAGCTA 60.094 45.455 0.00 0.00 0.00 3.32
2030 4809 9.747293 ACAGACTACAGACTAAGTTTAAACTTC 57.253 33.333 31.50 20.21 45.65 3.01
2033 4812 9.455847 GACTACAGACTAAGTTTAAACTTCGAA 57.544 33.333 31.50 16.93 45.65 3.71
2034 4813 9.242477 ACTACAGACTAAGTTTAAACTTCGAAC 57.758 33.333 31.50 22.96 45.65 3.95
2035 4814 9.241317 CTACAGACTAAGTTTAAACTTCGAACA 57.759 33.333 31.50 16.29 45.65 3.18
2036 4815 8.483307 ACAGACTAAGTTTAAACTTCGAACAA 57.517 30.769 31.50 15.66 45.65 2.83
2037 4816 8.385858 ACAGACTAAGTTTAAACTTCGAACAAC 58.614 33.333 31.50 18.10 45.65 3.32
2038 4817 8.385111 CAGACTAAGTTTAAACTTCGAACAACA 58.615 33.333 31.50 14.39 45.65 3.33
2039 4818 8.938906 AGACTAAGTTTAAACTTCGAACAACAA 58.061 29.630 31.50 13.77 45.65 2.83
2040 4819 9.712359 GACTAAGTTTAAACTTCGAACAACAAT 57.288 29.630 31.50 11.18 45.65 2.71
2041 4820 9.498307 ACTAAGTTTAAACTTCGAACAACAATG 57.502 29.630 31.50 8.95 45.65 2.82
2042 4821 9.710979 CTAAGTTTAAACTTCGAACAACAATGA 57.289 29.630 31.50 12.52 45.65 2.57
2043 4822 8.973835 AAGTTTAAACTTCGAACAACAATGAA 57.026 26.923 24.66 0.00 45.65 2.57
2044 4823 8.973835 AGTTTAAACTTCGAACAACAATGAAA 57.026 26.923 15.22 0.00 35.21 2.69
2045 4824 8.856247 AGTTTAAACTTCGAACAACAATGAAAC 58.144 29.630 15.22 0.00 35.21 2.78
2046 4825 8.640291 GTTTAAACTTCGAACAACAATGAAACA 58.360 29.630 11.18 0.00 0.00 2.83
2047 4826 8.744008 TTAAACTTCGAACAACAATGAAACAA 57.256 26.923 0.00 0.00 0.00 2.83
2048 4827 6.869421 AACTTCGAACAACAATGAAACAAG 57.131 33.333 0.00 0.00 0.00 3.16
2049 4828 6.189677 ACTTCGAACAACAATGAAACAAGA 57.810 33.333 0.00 0.00 0.00 3.02
2050 4829 6.616947 ACTTCGAACAACAATGAAACAAGAA 58.383 32.000 0.00 0.00 0.00 2.52
2051 4830 7.257722 ACTTCGAACAACAATGAAACAAGAAT 58.742 30.769 0.00 0.00 0.00 2.40
2052 4831 8.402472 ACTTCGAACAACAATGAAACAAGAATA 58.598 29.630 0.00 0.00 0.00 1.75
2053 4832 9.398170 CTTCGAACAACAATGAAACAAGAATAT 57.602 29.630 0.00 0.00 0.00 1.28
2054 4833 8.948853 TCGAACAACAATGAAACAAGAATATC 57.051 30.769 0.00 0.00 0.00 1.63
2055 4834 8.563732 TCGAACAACAATGAAACAAGAATATCA 58.436 29.630 0.00 0.00 0.00 2.15
2056 4835 9.179552 CGAACAACAATGAAACAAGAATATCAA 57.820 29.630 0.00 0.00 0.00 2.57
2058 4837 9.814899 AACAACAATGAAACAAGAATATCAACA 57.185 25.926 0.00 0.00 0.00 3.33
2059 4838 9.814899 ACAACAATGAAACAAGAATATCAACAA 57.185 25.926 0.00 0.00 0.00 2.83
2066 4845 8.229811 TGAAACAAGAATATCAACAAGATCACG 58.770 33.333 0.00 0.00 38.19 4.35
2067 4846 6.668541 ACAAGAATATCAACAAGATCACGG 57.331 37.500 0.00 0.00 38.19 4.94
2068 4847 6.173339 ACAAGAATATCAACAAGATCACGGT 58.827 36.000 0.00 0.00 38.19 4.83
2069 4848 6.655003 ACAAGAATATCAACAAGATCACGGTT 59.345 34.615 0.00 0.00 38.19 4.44
2070 4849 7.822334 ACAAGAATATCAACAAGATCACGGTTA 59.178 33.333 0.00 0.00 38.19 2.85
2071 4850 8.664798 CAAGAATATCAACAAGATCACGGTTAA 58.335 33.333 0.00 0.00 38.19 2.01
2072 4851 8.786826 AGAATATCAACAAGATCACGGTTAAA 57.213 30.769 0.00 0.00 38.19 1.52
2073 4852 8.883731 AGAATATCAACAAGATCACGGTTAAAG 58.116 33.333 0.00 0.00 38.19 1.85
2074 4853 4.742438 TCAACAAGATCACGGTTAAAGC 57.258 40.909 0.00 0.00 0.00 3.51
2075 4854 4.130857 TCAACAAGATCACGGTTAAAGCA 58.869 39.130 0.00 0.00 0.00 3.91
2076 4855 4.213270 TCAACAAGATCACGGTTAAAGCAG 59.787 41.667 0.00 0.00 0.00 4.24
2077 4856 4.002906 ACAAGATCACGGTTAAAGCAGA 57.997 40.909 0.00 0.00 0.00 4.26
2078 4857 3.997021 ACAAGATCACGGTTAAAGCAGAG 59.003 43.478 0.00 0.00 0.00 3.35
2079 4858 4.245660 CAAGATCACGGTTAAAGCAGAGA 58.754 43.478 0.00 0.00 0.00 3.10
2102 4881 3.703001 AAGCTCGAAGGGAGATGAAAA 57.297 42.857 0.00 0.00 46.23 2.29
2109 4888 0.035056 AGGGAGATGAAAACTGGCGG 60.035 55.000 0.00 0.00 0.00 6.13
2110 4889 1.032114 GGGAGATGAAAACTGGCGGG 61.032 60.000 0.00 0.00 0.00 6.13
2111 4890 1.032114 GGAGATGAAAACTGGCGGGG 61.032 60.000 0.00 0.00 0.00 5.73
2114 4893 1.203001 AGATGAAAACTGGCGGGGAAA 60.203 47.619 0.00 0.00 0.00 3.13
2115 4894 1.616374 GATGAAAACTGGCGGGGAAAA 59.384 47.619 0.00 0.00 0.00 2.29
2116 4895 1.036707 TGAAAACTGGCGGGGAAAAG 58.963 50.000 0.00 0.00 0.00 2.27
2118 4897 1.411246 GAAAACTGGCGGGGAAAAGTT 59.589 47.619 0.00 0.00 34.40 2.66
2119 4898 1.491668 AAACTGGCGGGGAAAAGTTT 58.508 45.000 0.00 0.00 37.88 2.66
2122 4901 0.313987 CTGGCGGGGAAAAGTTTCAC 59.686 55.000 6.15 1.84 39.85 3.18
2123 4902 0.395862 TGGCGGGGAAAAGTTTCACA 60.396 50.000 8.24 0.00 42.34 3.58
2124 4903 0.313987 GGCGGGGAAAAGTTTCACAG 59.686 55.000 8.24 5.21 42.34 3.66
2125 4904 0.313987 GCGGGGAAAAGTTTCACAGG 59.686 55.000 8.24 1.02 42.34 4.00
2126 4905 1.687563 CGGGGAAAAGTTTCACAGGT 58.312 50.000 8.24 0.00 42.34 4.00
2127 4906 1.336755 CGGGGAAAAGTTTCACAGGTG 59.663 52.381 8.24 0.00 42.34 4.00
2128 4907 1.686587 GGGGAAAAGTTTCACAGGTGG 59.313 52.381 8.24 0.00 42.34 4.61
2129 4908 2.661718 GGGAAAAGTTTCACAGGTGGA 58.338 47.619 6.15 0.00 40.30 4.02
2130 4909 3.028130 GGGAAAAGTTTCACAGGTGGAA 58.972 45.455 6.15 0.00 40.30 3.53
2131 4910 3.641436 GGGAAAAGTTTCACAGGTGGAAT 59.359 43.478 6.15 0.00 40.30 3.01
2132 4911 4.100963 GGGAAAAGTTTCACAGGTGGAATT 59.899 41.667 6.15 0.00 40.30 2.17
2174 4953 2.277084 GCCTGTTATCGTAACCACCAG 58.723 52.381 5.75 0.00 0.00 4.00
2225 5008 3.541130 CGACGAACGATACACTTTTCGAT 59.459 43.478 9.37 0.00 42.72 3.59
2281 5069 1.844357 CTAACCGATTAGACGTGTGCG 59.156 52.381 0.00 0.00 40.38 5.34
2286 5074 1.079405 ATTAGACGTGTGCGGTGGG 60.079 57.895 0.00 0.00 43.45 4.61
2292 5080 3.050275 GTGTGCGGTGGGCTCTTC 61.050 66.667 0.00 0.00 44.05 2.87
2355 5143 9.463443 CTGATGTATAGTATTTTCGTCATGTCA 57.537 33.333 0.00 0.00 0.00 3.58
2384 5172 2.963599 AAAGAGGAAAGCCCGGTTAA 57.036 45.000 0.00 0.00 40.87 2.01
2385 5173 2.963599 AAGAGGAAAGCCCGGTTAAA 57.036 45.000 0.00 0.00 40.87 1.52
2386 5174 2.491675 AGAGGAAAGCCCGGTTAAAG 57.508 50.000 0.00 0.00 40.87 1.85
2427 5215 2.733227 CGTTTGATCAAATCAGCCTGGC 60.733 50.000 23.05 11.65 40.94 4.85
2429 5217 1.758936 TGATCAAATCAGCCTGGCAG 58.241 50.000 22.65 13.84 33.59 4.85
2430 5218 1.005097 TGATCAAATCAGCCTGGCAGT 59.995 47.619 22.65 2.79 33.59 4.40
2431 5219 1.404391 GATCAAATCAGCCTGGCAGTG 59.596 52.381 22.65 11.66 0.00 3.66
2508 5312 0.598680 GCCACGGTAGATAGCAGCTG 60.599 60.000 10.11 10.11 0.00 4.24
2509 5313 0.032678 CCACGGTAGATAGCAGCTGG 59.967 60.000 17.12 0.00 0.00 4.85
2510 5314 1.032794 CACGGTAGATAGCAGCTGGA 58.967 55.000 17.12 0.00 0.00 3.86
2511 5315 1.000827 CACGGTAGATAGCAGCTGGAG 60.001 57.143 17.12 0.00 0.00 3.86
2512 5316 1.133761 ACGGTAGATAGCAGCTGGAGA 60.134 52.381 17.12 0.00 0.00 3.71
2513 5317 1.539388 CGGTAGATAGCAGCTGGAGAG 59.461 57.143 17.12 0.00 0.00 3.20
2514 5318 1.892474 GGTAGATAGCAGCTGGAGAGG 59.108 57.143 17.12 0.00 0.00 3.69
2515 5319 1.272212 GTAGATAGCAGCTGGAGAGGC 59.728 57.143 17.12 0.00 0.00 4.70
2605 5412 2.257371 GTCGCGTGTGCTACTCCA 59.743 61.111 5.77 0.00 39.65 3.86
2630 5437 3.507233 CCAGGTCCAGTTTACGTACTGTA 59.493 47.826 15.48 0.00 43.17 2.74
2645 5452 5.574815 GTACTGTACGAGCTAGCTACTAC 57.425 47.826 19.38 18.78 0.00 2.73
2646 5453 3.122297 ACTGTACGAGCTAGCTACTACG 58.878 50.000 19.38 19.01 0.00 3.51
2647 5454 3.181482 ACTGTACGAGCTAGCTACTACGA 60.181 47.826 25.05 13.39 0.00 3.43
2648 5455 3.379240 TGTACGAGCTAGCTACTACGAG 58.621 50.000 25.05 11.06 0.00 4.18
2649 5456 2.886862 ACGAGCTAGCTACTACGAGA 57.113 50.000 25.05 0.00 0.00 4.04
2650 5457 2.472816 ACGAGCTAGCTACTACGAGAC 58.527 52.381 25.05 7.28 0.00 3.36
2651 5458 2.101249 ACGAGCTAGCTACTACGAGACT 59.899 50.000 25.05 4.90 0.00 3.24
2656 5463 3.872771 GCTAGCTACTACGAGACTGAACT 59.127 47.826 7.70 0.00 0.00 3.01
2657 5464 4.260456 GCTAGCTACTACGAGACTGAACTG 60.260 50.000 7.70 0.00 0.00 3.16
2682 5489 5.760484 AGTTTGCAACCCAAATATCCAAT 57.240 34.783 0.00 0.00 44.61 3.16
2691 5498 6.694445 ACCCAAATATCCAATCAAAACCAA 57.306 33.333 0.00 0.00 0.00 3.67
2692 5499 6.472016 ACCCAAATATCCAATCAAAACCAAC 58.528 36.000 0.00 0.00 0.00 3.77
2775 5585 1.424638 ACAAGATACCGGGATCCAGG 58.575 55.000 27.49 27.49 0.00 4.45
2997 5820 1.154016 CAGCGACCTCCACGTACTG 60.154 63.158 0.00 0.00 0.00 2.74
3001 5824 2.282674 ACCTCCACGTACTGCCGA 60.283 61.111 0.00 0.00 0.00 5.54
3030 5858 0.516439 AAGTTCGTCTCTCGTCGGAC 59.484 55.000 0.00 0.00 40.80 4.79
3174 6003 1.141657 ACATGCTGCCTTATCGACCAT 59.858 47.619 0.00 0.00 0.00 3.55
3336 6166 1.678970 GGATTGCCTCGGCCTGTTT 60.679 57.895 0.00 0.00 41.09 2.83
3353 7594 0.181587 TTTGTTGCTGGGAAGTCGGA 59.818 50.000 0.00 0.00 0.00 4.55
3429 7670 0.671163 TGGTATTCCACGGCGTCAAC 60.671 55.000 10.85 3.82 39.03 3.18
3449 7691 4.532314 ACCTTACCTAGTTTTCCGTCAG 57.468 45.455 0.00 0.00 0.00 3.51
3476 7718 4.047822 GGATCTGCATTGTCTTCTCGTAG 58.952 47.826 0.00 0.00 0.00 3.51
3509 7751 3.782889 TCGCATGGATCTACGATATGG 57.217 47.619 0.00 0.00 0.00 2.74
3511 7753 2.166459 CGCATGGATCTACGATATGGGT 59.834 50.000 0.00 0.00 0.00 4.51
3514 7756 4.507710 CATGGATCTACGATATGGGTTGG 58.492 47.826 0.00 0.00 0.00 3.77
3517 7759 3.056035 GGATCTACGATATGGGTTGGGTC 60.056 52.174 0.00 0.00 0.00 4.46
3518 7760 3.035055 TCTACGATATGGGTTGGGTCA 57.965 47.619 0.00 0.00 0.00 4.02
3520 7762 2.413310 ACGATATGGGTTGGGTCAAC 57.587 50.000 2.46 2.46 42.89 3.18
3664 7908 0.844661 TGGGGTATCCTGTGTGCCTT 60.845 55.000 0.00 0.00 36.20 4.35
3709 7953 7.562454 TCTCTTCGGTTTTCAACAAATTAGT 57.438 32.000 0.00 0.00 0.00 2.24
3803 8050 0.884704 AACACTCTTGCGGCGACAAT 60.885 50.000 12.98 0.00 0.00 2.71
3819 8066 7.570507 GCGGCGACAATATACATAGATTTTTCA 60.571 37.037 12.98 0.00 0.00 2.69
3848 8095 9.727627 AGTAATGCTATACTCACGTAAACTTAC 57.272 33.333 0.00 0.00 30.26 2.34
3869 8116 4.996062 CGTGAGGTTTTTACGTAATGGT 57.004 40.909 9.18 0.00 33.48 3.55
3870 8117 5.347012 CGTGAGGTTTTTACGTAATGGTT 57.653 39.130 9.18 0.00 33.48 3.67
3871 8118 5.141568 CGTGAGGTTTTTACGTAATGGTTG 58.858 41.667 9.18 0.00 33.48 3.77
3872 8119 5.050227 CGTGAGGTTTTTACGTAATGGTTGA 60.050 40.000 9.18 0.00 33.48 3.18
3873 8120 6.347888 CGTGAGGTTTTTACGTAATGGTTGAT 60.348 38.462 9.18 0.00 33.48 2.57
3874 8121 6.799925 GTGAGGTTTTTACGTAATGGTTGATG 59.200 38.462 9.18 0.00 0.00 3.07
3875 8122 6.487331 TGAGGTTTTTACGTAATGGTTGATGT 59.513 34.615 9.18 0.00 0.00 3.06
3876 8123 6.674066 AGGTTTTTACGTAATGGTTGATGTG 58.326 36.000 9.18 0.00 0.00 3.21
3877 8124 5.859648 GGTTTTTACGTAATGGTTGATGTGG 59.140 40.000 9.18 0.00 0.00 4.17
3878 8125 6.294065 GGTTTTTACGTAATGGTTGATGTGGA 60.294 38.462 9.18 0.00 0.00 4.02
3879 8126 6.489127 TTTTACGTAATGGTTGATGTGGAG 57.511 37.500 9.18 0.00 0.00 3.86
3880 8127 2.985896 ACGTAATGGTTGATGTGGAGG 58.014 47.619 0.00 0.00 0.00 4.30
3881 8128 2.569853 ACGTAATGGTTGATGTGGAGGA 59.430 45.455 0.00 0.00 0.00 3.71
3882 8129 3.008594 ACGTAATGGTTGATGTGGAGGAA 59.991 43.478 0.00 0.00 0.00 3.36
3883 8130 3.623060 CGTAATGGTTGATGTGGAGGAAG 59.377 47.826 0.00 0.00 0.00 3.46
3884 8131 3.814504 AATGGTTGATGTGGAGGAAGT 57.185 42.857 0.00 0.00 0.00 3.01
3885 8132 3.814504 ATGGTTGATGTGGAGGAAGTT 57.185 42.857 0.00 0.00 0.00 2.66
3886 8133 4.927267 ATGGTTGATGTGGAGGAAGTTA 57.073 40.909 0.00 0.00 0.00 2.24
3887 8134 4.715534 TGGTTGATGTGGAGGAAGTTAA 57.284 40.909 0.00 0.00 0.00 2.01
3888 8135 5.255397 TGGTTGATGTGGAGGAAGTTAAT 57.745 39.130 0.00 0.00 0.00 1.40
3889 8136 5.640147 TGGTTGATGTGGAGGAAGTTAATT 58.360 37.500 0.00 0.00 0.00 1.40
3890 8137 5.476599 TGGTTGATGTGGAGGAAGTTAATTG 59.523 40.000 0.00 0.00 0.00 2.32
3891 8138 5.105756 GGTTGATGTGGAGGAAGTTAATTGG 60.106 44.000 0.00 0.00 0.00 3.16
3892 8139 5.512942 TGATGTGGAGGAAGTTAATTGGA 57.487 39.130 0.00 0.00 0.00 3.53
3893 8140 6.078456 TGATGTGGAGGAAGTTAATTGGAT 57.922 37.500 0.00 0.00 0.00 3.41
3894 8141 5.887598 TGATGTGGAGGAAGTTAATTGGATG 59.112 40.000 0.00 0.00 0.00 3.51
3895 8142 5.512942 TGTGGAGGAAGTTAATTGGATGA 57.487 39.130 0.00 0.00 0.00 2.92
3896 8143 5.886609 TGTGGAGGAAGTTAATTGGATGAA 58.113 37.500 0.00 0.00 0.00 2.57
3897 8144 5.945784 TGTGGAGGAAGTTAATTGGATGAAG 59.054 40.000 0.00 0.00 0.00 3.02
3898 8145 6.180472 GTGGAGGAAGTTAATTGGATGAAGA 58.820 40.000 0.00 0.00 0.00 2.87
3899 8146 6.830838 GTGGAGGAAGTTAATTGGATGAAGAT 59.169 38.462 0.00 0.00 0.00 2.40
3900 8147 7.340487 GTGGAGGAAGTTAATTGGATGAAGATT 59.660 37.037 0.00 0.00 0.00 2.40
3901 8148 8.556589 TGGAGGAAGTTAATTGGATGAAGATTA 58.443 33.333 0.00 0.00 0.00 1.75
3902 8149 9.061435 GGAGGAAGTTAATTGGATGAAGATTAG 57.939 37.037 0.00 0.00 0.00 1.73
3903 8150 9.620259 GAGGAAGTTAATTGGATGAAGATTAGT 57.380 33.333 0.00 0.00 0.00 2.24
3904 8151 9.401058 AGGAAGTTAATTGGATGAAGATTAGTG 57.599 33.333 0.00 0.00 0.00 2.74
3905 8152 8.624776 GGAAGTTAATTGGATGAAGATTAGTGG 58.375 37.037 0.00 0.00 0.00 4.00
3906 8153 7.573968 AGTTAATTGGATGAAGATTAGTGGC 57.426 36.000 0.00 0.00 0.00 5.01
3907 8154 7.349598 AGTTAATTGGATGAAGATTAGTGGCT 58.650 34.615 0.00 0.00 0.00 4.75
3908 8155 7.284034 AGTTAATTGGATGAAGATTAGTGGCTG 59.716 37.037 0.00 0.00 0.00 4.85
3909 8156 3.565764 TGGATGAAGATTAGTGGCTGG 57.434 47.619 0.00 0.00 0.00 4.85
3910 8157 3.114606 TGGATGAAGATTAGTGGCTGGA 58.885 45.455 0.00 0.00 0.00 3.86
3911 8158 3.135348 TGGATGAAGATTAGTGGCTGGAG 59.865 47.826 0.00 0.00 0.00 3.86
3912 8159 2.698855 TGAAGATTAGTGGCTGGAGC 57.301 50.000 0.00 0.00 41.14 4.70
3923 8170 3.260100 CTGGAGCCCACCCCACTT 61.260 66.667 0.00 0.00 0.00 3.16
3924 8171 3.574074 CTGGAGCCCACCCCACTTG 62.574 68.421 0.00 0.00 0.00 3.16
3925 8172 3.256960 GGAGCCCACCCCACTTGA 61.257 66.667 0.00 0.00 0.00 3.02
3926 8173 2.840753 GGAGCCCACCCCACTTGAA 61.841 63.158 0.00 0.00 0.00 2.69
3927 8174 1.152830 GAGCCCACCCCACTTGAAA 59.847 57.895 0.00 0.00 0.00 2.69
3928 8175 0.251787 GAGCCCACCCCACTTGAAAT 60.252 55.000 0.00 0.00 0.00 2.17
3929 8176 0.251787 AGCCCACCCCACTTGAAATC 60.252 55.000 0.00 0.00 0.00 2.17
3930 8177 0.541764 GCCCACCCCACTTGAAATCA 60.542 55.000 0.00 0.00 0.00 2.57
3931 8178 1.549203 CCCACCCCACTTGAAATCAG 58.451 55.000 0.00 0.00 0.00 2.90
3932 8179 1.549203 CCACCCCACTTGAAATCAGG 58.451 55.000 0.00 0.00 0.00 3.86
3933 8180 1.549203 CACCCCACTTGAAATCAGGG 58.451 55.000 4.39 4.39 40.58 4.45
3935 8182 3.288099 CCCACTTGAAATCAGGGGG 57.712 57.895 6.84 6.84 45.21 5.40
3954 8201 5.286760 GGGGGAGAGGATTATAGTTAGGA 57.713 47.826 0.00 0.00 0.00 2.94
3955 8202 5.662597 GGGGGAGAGGATTATAGTTAGGAA 58.337 45.833 0.00 0.00 0.00 3.36
3956 8203 5.722441 GGGGGAGAGGATTATAGTTAGGAAG 59.278 48.000 0.00 0.00 0.00 3.46
3957 8204 6.470420 GGGGGAGAGGATTATAGTTAGGAAGA 60.470 46.154 0.00 0.00 0.00 2.87
3958 8205 7.193338 GGGGAGAGGATTATAGTTAGGAAGAT 58.807 42.308 0.00 0.00 0.00 2.40
3959 8206 7.680739 GGGGAGAGGATTATAGTTAGGAAGATT 59.319 40.741 0.00 0.00 0.00 2.40
3960 8207 9.771140 GGGAGAGGATTATAGTTAGGAAGATTA 57.229 37.037 0.00 0.00 0.00 1.75
3963 8210 9.810870 AGAGGATTATAGTTAGGAAGATTACGT 57.189 33.333 0.00 0.00 0.00 3.57
3971 8218 9.937175 ATAGTTAGGAAGATTACGTTACGTTAC 57.063 33.333 17.42 8.04 41.54 2.50
3972 8219 8.045176 AGTTAGGAAGATTACGTTACGTTACT 57.955 34.615 17.42 6.08 41.54 2.24
3973 8220 8.515414 AGTTAGGAAGATTACGTTACGTTACTT 58.485 33.333 17.42 17.56 41.54 2.24
3974 8221 9.129209 GTTAGGAAGATTACGTTACGTTACTTT 57.871 33.333 17.42 5.11 41.54 2.66
3976 8223 8.675040 AGGAAGATTACGTTACGTTACTTTAC 57.325 34.615 17.42 14.28 41.54 2.01
3977 8224 8.296713 AGGAAGATTACGTTACGTTACTTTACA 58.703 33.333 17.42 0.00 41.54 2.41
3978 8225 9.076596 GGAAGATTACGTTACGTTACTTTACAT 57.923 33.333 17.42 0.00 41.54 2.29
3981 8228 9.722056 AGATTACGTTACGTTACTTTACATAGG 57.278 33.333 17.42 0.00 41.54 2.57
3982 8229 7.734538 TTACGTTACGTTACTTTACATAGGC 57.265 36.000 17.42 0.00 41.54 3.93
3983 8230 5.954335 ACGTTACGTTACTTTACATAGGCT 58.046 37.500 3.95 0.00 36.35 4.58
3984 8231 5.801947 ACGTTACGTTACTTTACATAGGCTG 59.198 40.000 3.95 0.00 36.35 4.85
3985 8232 5.801947 CGTTACGTTACTTTACATAGGCTGT 59.198 40.000 2.93 0.00 42.13 4.40
3986 8233 6.308766 CGTTACGTTACTTTACATAGGCTGTT 59.691 38.462 2.93 0.00 39.39 3.16
3987 8234 7.461938 CGTTACGTTACTTTACATAGGCTGTTC 60.462 40.741 2.93 0.00 39.39 3.18
3988 8235 4.860907 ACGTTACTTTACATAGGCTGTTCG 59.139 41.667 0.00 0.00 39.39 3.95
3989 8236 4.860907 CGTTACTTTACATAGGCTGTTCGT 59.139 41.667 0.00 0.00 39.39 3.85
3990 8237 6.029607 CGTTACTTTACATAGGCTGTTCGTA 58.970 40.000 0.00 0.00 39.39 3.43
3991 8238 6.195983 CGTTACTTTACATAGGCTGTTCGTAG 59.804 42.308 0.00 0.00 39.39 3.51
3992 8239 5.909621 ACTTTACATAGGCTGTTCGTAGA 57.090 39.130 0.00 0.00 39.39 2.59
3993 8240 6.466885 ACTTTACATAGGCTGTTCGTAGAT 57.533 37.500 0.00 0.00 39.39 1.98
3994 8241 6.273825 ACTTTACATAGGCTGTTCGTAGATG 58.726 40.000 0.00 0.00 39.39 2.90
3995 8242 3.735237 ACATAGGCTGTTCGTAGATGG 57.265 47.619 0.00 0.00 32.90 3.51
3996 8243 3.296854 ACATAGGCTGTTCGTAGATGGA 58.703 45.455 0.00 0.00 32.90 3.41
3997 8244 3.319405 ACATAGGCTGTTCGTAGATGGAG 59.681 47.826 0.00 0.00 32.90 3.86
3998 8245 0.461961 AGGCTGTTCGTAGATGGAGC 59.538 55.000 0.00 0.00 35.04 4.70
3999 8246 0.175760 GGCTGTTCGTAGATGGAGCA 59.824 55.000 0.00 0.00 35.08 4.26
4000 8247 1.202580 GGCTGTTCGTAGATGGAGCAT 60.203 52.381 0.00 0.00 35.08 3.79
4001 8248 2.555199 GCTGTTCGTAGATGGAGCATT 58.445 47.619 0.00 0.00 35.04 3.56
4002 8249 3.492656 GGCTGTTCGTAGATGGAGCATTA 60.493 47.826 0.00 0.00 35.08 1.90
4003 8250 4.310769 GCTGTTCGTAGATGGAGCATTAT 58.689 43.478 0.00 0.00 35.04 1.28
4004 8251 4.387256 GCTGTTCGTAGATGGAGCATTATC 59.613 45.833 0.00 0.00 35.04 1.75
4005 8252 4.546570 TGTTCGTAGATGGAGCATTATCG 58.453 43.478 0.00 0.00 35.04 2.92
4006 8253 4.277423 TGTTCGTAGATGGAGCATTATCGA 59.723 41.667 0.00 0.00 35.04 3.59
4007 8254 5.048013 TGTTCGTAGATGGAGCATTATCGAT 60.048 40.000 2.16 2.16 35.04 3.59
4008 8255 5.644977 TCGTAGATGGAGCATTATCGATT 57.355 39.130 1.71 0.00 0.00 3.34
4009 8256 6.025749 TCGTAGATGGAGCATTATCGATTT 57.974 37.500 1.71 0.00 0.00 2.17
4010 8257 6.455647 TCGTAGATGGAGCATTATCGATTTT 58.544 36.000 1.71 0.00 0.00 1.82
4011 8258 6.929049 TCGTAGATGGAGCATTATCGATTTTT 59.071 34.615 1.71 0.00 0.00 1.94
4012 8259 7.116376 TCGTAGATGGAGCATTATCGATTTTTC 59.884 37.037 1.71 0.00 0.00 2.29
4463 8710 0.679002 ATTCTGCTGCTGCCGTTGAT 60.679 50.000 13.47 1.15 38.71 2.57
4514 8761 2.124570 CCATGGTCCCTGGAAGCG 60.125 66.667 7.40 0.00 35.70 4.68
4520 8767 1.142097 GTCCCTGGAAGCGCTACTC 59.858 63.158 12.05 5.19 0.00 2.59
4720 8998 8.660435 ACATGTAGTAGCTGATTGGGTTATATT 58.340 33.333 0.00 0.00 0.00 1.28
4727 9005 6.779860 AGCTGATTGGGTTATATTATCGGTT 58.220 36.000 0.00 0.00 0.00 4.44
4746 9024 4.394920 CGGTTTACCTGCTGAAACATGTAT 59.605 41.667 0.00 0.00 37.30 2.29
4762 9040 6.620877 ACATGTATTACCTGACCTTCTTCA 57.379 37.500 0.00 0.00 0.00 3.02
4773 9051 1.379642 CCTTCTTCATGGCGGCTTCC 61.380 60.000 11.43 0.00 0.00 3.46
4788 9066 0.750182 CTTCCGGGGTGTGTGTGTTT 60.750 55.000 0.00 0.00 0.00 2.83
4793 9071 2.030628 CCGGGGTGTGTGTGTTTTTATC 60.031 50.000 0.00 0.00 0.00 1.75
4794 9072 2.350007 CGGGGTGTGTGTGTTTTTATCG 60.350 50.000 0.00 0.00 0.00 2.92
4798 9076 5.341617 GGGTGTGTGTGTTTTTATCGAAAA 58.658 37.500 0.00 0.00 34.93 2.29
5018 9296 5.657474 ACACTCATATACGTTGGTGGTTAG 58.343 41.667 0.00 0.00 0.00 2.34
5444 9750 3.272574 ACAGCCATCATCGTCTTCATT 57.727 42.857 0.00 0.00 0.00 2.57
5633 9939 9.920946 ACATTACTTCTTACAATGGGTCATTAT 57.079 29.630 0.00 0.00 34.63 1.28
5690 9996 9.781834 CAACTATTACAAAGAAAAGTTGTGACA 57.218 29.630 0.00 0.00 39.50 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.565090 CTGATCTTCCTTGATTAATACAATCCA 57.435 33.333 0.00 0.00 0.00 3.41
46 47 1.741327 GCGCCAATTGCCATCAGGAT 61.741 55.000 0.00 0.00 36.89 3.24
62 63 0.101219 GGACCTGATGAAATTGGCGC 59.899 55.000 0.00 0.00 0.00 6.53
86 87 1.529438 ACGTATTGTTGTGTGGCTTCG 59.471 47.619 0.00 0.00 0.00 3.79
101 102 4.021894 GCTATGGATCTCTGAACCACGTAT 60.022 45.833 0.00 0.00 37.33 3.06
104 105 2.363680 AGCTATGGATCTCTGAACCACG 59.636 50.000 0.00 0.00 37.33 4.94
234 265 9.956720 CTTGATTAATCCTCAACATAATCCAAC 57.043 33.333 12.90 0.00 35.08 3.77
263 294 5.211201 AGCCCATACTGCCAAATTCTATTT 58.789 37.500 0.00 0.00 0.00 1.40
265 296 4.459852 AGCCCATACTGCCAAATTCTAT 57.540 40.909 0.00 0.00 0.00 1.98
345 376 3.068024 TCAACAAGGACATGCTTTTCCAC 59.932 43.478 7.47 0.00 33.92 4.02
352 383 4.586001 ACATCTTTTCAACAAGGACATGCT 59.414 37.500 0.00 0.00 0.00 3.79
353 384 4.874970 ACATCTTTTCAACAAGGACATGC 58.125 39.130 0.00 0.00 0.00 4.06
383 414 5.241403 TCACCAACATACATGTCTTTCCT 57.759 39.130 0.00 0.00 40.80 3.36
462 494 9.495572 TTTGCGGGATTTTCAAATATACTTTTT 57.504 25.926 0.00 0.00 0.00 1.94
480 512 6.576662 TCAAATATACTTGTTTTTGCGGGA 57.423 33.333 0.00 0.00 0.00 5.14
481 513 7.644986 TTTCAAATATACTTGTTTTTGCGGG 57.355 32.000 0.00 0.00 0.00 6.13
687 830 7.603024 GCTTTTCTGCGGGTATTATTAGATAGT 59.397 37.037 0.00 0.00 0.00 2.12
721 864 5.646360 GCACAAATAGGGAAAGCTAGTGTAA 59.354 40.000 0.00 0.00 0.00 2.41
795 3547 1.037579 TCATGAGCCGTCGATGACCT 61.038 55.000 6.11 1.63 0.00 3.85
907 3663 0.969894 AGCGAGTAGAGGCTTGTGTT 59.030 50.000 0.00 0.00 35.61 3.32
908 3664 0.969894 AAGCGAGTAGAGGCTTGTGT 59.030 50.000 0.00 0.00 46.96 3.72
913 3669 1.267121 TGGAAAAGCGAGTAGAGGCT 58.733 50.000 0.00 0.00 42.33 4.58
917 3673 4.000988 GTGGAAATGGAAAAGCGAGTAGA 58.999 43.478 0.00 0.00 0.00 2.59
1265 4027 2.813474 CCATGCTCGACGCCGAAA 60.813 61.111 0.00 0.00 45.04 3.46
1341 4103 4.143333 CTGGAGGTGTACGGCCGG 62.143 72.222 31.76 11.88 0.00 6.13
1398 4160 2.182014 GCAAAAATATTCGCGGACACC 58.818 47.619 6.13 0.00 0.00 4.16
1405 4167 2.398451 CGATCAGCGCAAAAATATTCGC 59.602 45.455 11.47 10.36 46.95 4.70
1406 4168 3.860672 TCGATCAGCGCAAAAATATTCG 58.139 40.909 11.47 6.66 40.61 3.34
1407 4169 3.661270 GCTCGATCAGCGCAAAAATATTC 59.339 43.478 11.47 0.00 38.76 1.75
1408 4170 3.621794 GCTCGATCAGCGCAAAAATATT 58.378 40.909 11.47 0.00 38.76 1.28
1409 4171 3.259207 GCTCGATCAGCGCAAAAATAT 57.741 42.857 11.47 0.00 38.76 1.28
1410 4172 2.737467 GCTCGATCAGCGCAAAAATA 57.263 45.000 11.47 0.00 38.76 1.40
1411 4173 3.611433 GCTCGATCAGCGCAAAAAT 57.389 47.368 11.47 0.00 38.76 1.82
1419 4181 2.959071 GTGGAGCGCTCGATCAGC 60.959 66.667 29.81 15.95 45.85 4.26
1421 4183 2.867333 GAACGTGGAGCGCTCGATCA 62.867 60.000 29.81 19.84 46.11 2.92
1428 4190 2.279937 GATCAACGAACGTGGAGCGC 62.280 60.000 10.14 0.00 46.11 5.92
1433 4195 1.067846 TCCTCTGATCAACGAACGTGG 60.068 52.381 0.00 0.00 0.00 4.94
1434 4196 2.254459 CTCCTCTGATCAACGAACGTG 58.746 52.381 0.00 0.00 0.00 4.49
1447 4209 4.583871 ACAAAGATTACTTGCCTCCTCTG 58.416 43.478 0.00 0.00 36.39 3.35
1448 4210 4.917906 ACAAAGATTACTTGCCTCCTCT 57.082 40.909 0.00 0.00 36.39 3.69
1449 4211 6.599638 ACAATACAAAGATTACTTGCCTCCTC 59.400 38.462 0.00 0.00 36.39 3.71
1450 4212 6.375455 CACAATACAAAGATTACTTGCCTCCT 59.625 38.462 0.00 0.00 36.39 3.69
1451 4213 6.151144 ACACAATACAAAGATTACTTGCCTCC 59.849 38.462 0.00 0.00 36.39 4.30
1452 4214 7.145932 ACACAATACAAAGATTACTTGCCTC 57.854 36.000 0.00 0.00 36.39 4.70
1453 4215 7.524717 AACACAATACAAAGATTACTTGCCT 57.475 32.000 0.00 0.00 36.39 4.75
1454 4216 7.116233 CCAAACACAATACAAAGATTACTTGCC 59.884 37.037 0.00 0.00 36.39 4.52
1455 4217 7.651704 ACCAAACACAATACAAAGATTACTTGC 59.348 33.333 0.00 0.00 36.39 4.01
1456 4218 9.528018 AACCAAACACAATACAAAGATTACTTG 57.472 29.630 0.00 0.00 36.39 3.16
1460 4222 7.492524 TGCAACCAAACACAATACAAAGATTA 58.507 30.769 0.00 0.00 0.00 1.75
1466 4228 6.801539 TTTTTGCAACCAAACACAATACAA 57.198 29.167 0.00 0.00 40.45 2.41
1627 4390 0.033796 ATCAACTGCACCTGGGATGG 60.034 55.000 0.00 0.00 0.00 3.51
1659 4422 5.606348 AGTTGAAGTAGGCAGGAAGATAG 57.394 43.478 0.00 0.00 0.00 2.08
1766 4539 7.256154 GGGGGAAATTCATTGAACTTAAACTCA 60.256 37.037 0.15 0.00 0.00 3.41
1843 4617 6.984474 CGAACCAGATGGCTTCTTTAATACTA 59.016 38.462 0.00 0.00 39.32 1.82
1844 4618 5.817816 CGAACCAGATGGCTTCTTTAATACT 59.182 40.000 0.00 0.00 39.32 2.12
1845 4619 5.815740 TCGAACCAGATGGCTTCTTTAATAC 59.184 40.000 0.00 0.00 39.32 1.89
1856 4630 1.686325 TAGGGCTCGAACCAGATGGC 61.686 60.000 7.26 0.00 39.32 4.40
1887 4661 9.830975 TTCAAGCTTACTGTATGATAAATGCTA 57.169 29.630 0.00 0.00 0.00 3.49
1903 4677 0.788391 CCGTCGTGGTTCAAGCTTAC 59.212 55.000 0.00 0.00 0.00 2.34
1910 4684 2.679450 CTTGTAATCCGTCGTGGTTCA 58.321 47.619 0.00 0.00 39.52 3.18
2030 4809 8.726650 TGATATTCTTGTTTCATTGTTGTTCG 57.273 30.769 0.00 0.00 0.00 3.95
2033 4812 9.814899 TTGTTGATATTCTTGTTTCATTGTTGT 57.185 25.926 0.00 0.00 0.00 3.32
2040 4819 8.229811 CGTGATCTTGTTGATATTCTTGTTTCA 58.770 33.333 0.00 0.00 35.14 2.69
2041 4820 7.693951 CCGTGATCTTGTTGATATTCTTGTTTC 59.306 37.037 0.00 0.00 35.14 2.78
2042 4821 7.174946 ACCGTGATCTTGTTGATATTCTTGTTT 59.825 33.333 0.00 0.00 35.14 2.83
2043 4822 6.655003 ACCGTGATCTTGTTGATATTCTTGTT 59.345 34.615 0.00 0.00 35.14 2.83
2044 4823 6.173339 ACCGTGATCTTGTTGATATTCTTGT 58.827 36.000 0.00 0.00 35.14 3.16
2045 4824 6.668541 ACCGTGATCTTGTTGATATTCTTG 57.331 37.500 0.00 0.00 35.14 3.02
2046 4825 8.786826 TTAACCGTGATCTTGTTGATATTCTT 57.213 30.769 0.00 0.00 35.14 2.52
2047 4826 8.786826 TTTAACCGTGATCTTGTTGATATTCT 57.213 30.769 0.00 0.00 35.14 2.40
2048 4827 7.640240 GCTTTAACCGTGATCTTGTTGATATTC 59.360 37.037 0.00 0.00 35.14 1.75
2049 4828 7.120579 TGCTTTAACCGTGATCTTGTTGATATT 59.879 33.333 0.00 0.00 35.14 1.28
2050 4829 6.597672 TGCTTTAACCGTGATCTTGTTGATAT 59.402 34.615 0.00 0.00 35.14 1.63
2051 4830 5.935206 TGCTTTAACCGTGATCTTGTTGATA 59.065 36.000 0.00 0.00 35.14 2.15
2052 4831 4.759693 TGCTTTAACCGTGATCTTGTTGAT 59.240 37.500 0.00 0.00 38.27 2.57
2053 4832 4.130857 TGCTTTAACCGTGATCTTGTTGA 58.869 39.130 0.00 0.00 0.00 3.18
2054 4833 4.213270 TCTGCTTTAACCGTGATCTTGTTG 59.787 41.667 0.00 0.00 0.00 3.33
2055 4834 4.385825 TCTGCTTTAACCGTGATCTTGTT 58.614 39.130 0.00 0.00 0.00 2.83
2056 4835 3.997021 CTCTGCTTTAACCGTGATCTTGT 59.003 43.478 0.00 0.00 0.00 3.16
2057 4836 4.245660 TCTCTGCTTTAACCGTGATCTTG 58.754 43.478 0.00 0.00 0.00 3.02
2058 4837 4.220821 TCTCTCTGCTTTAACCGTGATCTT 59.779 41.667 0.00 0.00 0.00 2.40
2059 4838 3.764434 TCTCTCTGCTTTAACCGTGATCT 59.236 43.478 0.00 0.00 0.00 2.75
2060 4839 4.111375 TCTCTCTGCTTTAACCGTGATC 57.889 45.455 0.00 0.00 0.00 2.92
2061 4840 4.537135 TTCTCTCTGCTTTAACCGTGAT 57.463 40.909 0.00 0.00 0.00 3.06
2062 4841 4.307432 CTTTCTCTCTGCTTTAACCGTGA 58.693 43.478 0.00 0.00 0.00 4.35
2063 4842 3.120511 GCTTTCTCTCTGCTTTAACCGTG 60.121 47.826 0.00 0.00 0.00 4.94
2064 4843 3.067833 GCTTTCTCTCTGCTTTAACCGT 58.932 45.455 0.00 0.00 0.00 4.83
2065 4844 3.330267 AGCTTTCTCTCTGCTTTAACCG 58.670 45.455 0.00 0.00 32.61 4.44
2066 4845 3.369451 CGAGCTTTCTCTCTGCTTTAACC 59.631 47.826 0.00 0.00 37.16 2.85
2067 4846 4.238514 TCGAGCTTTCTCTCTGCTTTAAC 58.761 43.478 0.00 0.00 37.16 2.01
2068 4847 4.521130 TCGAGCTTTCTCTCTGCTTTAA 57.479 40.909 0.00 0.00 37.16 1.52
2069 4848 4.489810 CTTCGAGCTTTCTCTCTGCTTTA 58.510 43.478 0.00 0.00 37.16 1.85
2070 4849 3.324993 CTTCGAGCTTTCTCTCTGCTTT 58.675 45.455 0.00 0.00 37.16 3.51
2071 4850 2.353605 CCTTCGAGCTTTCTCTCTGCTT 60.354 50.000 0.00 0.00 37.16 3.91
2072 4851 1.204467 CCTTCGAGCTTTCTCTCTGCT 59.796 52.381 0.00 0.00 40.02 4.24
2073 4852 1.639280 CCTTCGAGCTTTCTCTCTGC 58.361 55.000 0.00 0.00 37.19 4.26
2074 4853 1.821753 TCCCTTCGAGCTTTCTCTCTG 59.178 52.381 0.00 0.00 37.19 3.35
2075 4854 2.099405 CTCCCTTCGAGCTTTCTCTCT 58.901 52.381 0.00 0.00 37.19 3.10
2076 4855 2.096248 TCTCCCTTCGAGCTTTCTCTC 58.904 52.381 0.00 0.00 38.62 3.20
2077 4856 2.223803 TCTCCCTTCGAGCTTTCTCT 57.776 50.000 0.00 0.00 38.62 3.10
2078 4857 2.428890 TCATCTCCCTTCGAGCTTTCTC 59.571 50.000 0.00 0.00 38.62 2.87
2079 4858 2.461695 TCATCTCCCTTCGAGCTTTCT 58.538 47.619 0.00 0.00 38.62 2.52
2102 4881 0.106419 TGAAACTTTTCCCCGCCAGT 60.106 50.000 0.00 0.00 36.36 4.00
2109 4888 2.661718 TCCACCTGTGAAACTTTTCCC 58.338 47.619 0.00 0.00 38.04 3.97
2110 4889 4.937201 ATTCCACCTGTGAAACTTTTCC 57.063 40.909 0.00 0.00 38.04 3.13
2111 4890 7.598869 GGATTAATTCCACCTGTGAAACTTTTC 59.401 37.037 0.00 0.00 44.74 2.29
2114 4893 6.590234 GGATTAATTCCACCTGTGAAACTT 57.410 37.500 0.00 0.00 44.74 2.66
2127 4906 3.696051 TGCTCTGCTGTTGGATTAATTCC 59.304 43.478 0.00 0.00 45.69 3.01
2128 4907 4.439289 GGTGCTCTGCTGTTGGATTAATTC 60.439 45.833 0.00 0.00 0.00 2.17
2129 4908 3.445096 GGTGCTCTGCTGTTGGATTAATT 59.555 43.478 0.00 0.00 0.00 1.40
2130 4909 3.019564 GGTGCTCTGCTGTTGGATTAAT 58.980 45.455 0.00 0.00 0.00 1.40
2131 4910 2.436417 GGTGCTCTGCTGTTGGATTAA 58.564 47.619 0.00 0.00 0.00 1.40
2132 4911 1.340017 GGGTGCTCTGCTGTTGGATTA 60.340 52.381 0.00 0.00 0.00 1.75
2174 4953 0.951558 AGACATGGTGTTTTGCGGAC 59.048 50.000 0.00 0.00 0.00 4.79
2225 5008 4.447616 CCATTCATATGGGGGCAAGACTTA 60.448 45.833 2.13 0.00 46.43 2.24
2258 5041 4.553351 CGCACACGTCTAATCGGTTAGATA 60.553 45.833 20.56 0.00 45.84 1.98
2286 5074 0.995803 AAGAGGGAAAGGGGAAGAGC 59.004 55.000 0.00 0.00 0.00 4.09
2292 5080 1.966845 TACAGGAAGAGGGAAAGGGG 58.033 55.000 0.00 0.00 0.00 4.79
2338 5126 9.214957 TCATTACTTTGACATGACGAAAATACT 57.785 29.630 0.00 0.00 0.00 2.12
2347 5135 8.099364 TCCTCTTTTCATTACTTTGACATGAC 57.901 34.615 0.00 0.00 0.00 3.06
2355 5143 5.048013 CGGGCTTTCCTCTTTTCATTACTTT 60.048 40.000 0.00 0.00 0.00 2.66
2429 5217 2.906897 CCCACCAGTGTGTGCCAC 60.907 66.667 6.30 0.00 44.89 5.01
2430 5218 3.414136 GACCCACCAGTGTGTGCCA 62.414 63.158 6.30 0.00 41.09 4.92
2431 5219 2.594592 GACCCACCAGTGTGTGCC 60.595 66.667 6.30 0.00 41.09 5.01
2492 5289 1.133761 TCTCCAGCTGCTATCTACCGT 60.134 52.381 8.66 0.00 0.00 4.83
2508 5312 1.153469 CTTTGCTCTCCGCCTCTCC 60.153 63.158 0.00 0.00 38.05 3.71
2509 5313 0.459411 GACTTTGCTCTCCGCCTCTC 60.459 60.000 0.00 0.00 38.05 3.20
2510 5314 1.594310 GACTTTGCTCTCCGCCTCT 59.406 57.895 0.00 0.00 38.05 3.69
2511 5315 1.807573 CGACTTTGCTCTCCGCCTC 60.808 63.158 0.00 0.00 38.05 4.70
2512 5316 2.262915 CGACTTTGCTCTCCGCCT 59.737 61.111 0.00 0.00 38.05 5.52
2513 5317 3.491652 GCGACTTTGCTCTCCGCC 61.492 66.667 0.00 0.00 39.97 6.13
2514 5318 2.433318 AGCGACTTTGCTCTCCGC 60.433 61.111 0.00 0.00 42.95 5.54
2515 5319 2.734673 GCAGCGACTTTGCTCTCCG 61.735 63.158 0.00 0.00 45.23 4.63
2591 5398 1.446272 GGACTGGAGTAGCACACGC 60.446 63.158 0.00 0.00 38.99 5.34
2605 5412 1.713297 ACGTAAACTGGACCTGGACT 58.287 50.000 0.00 0.00 0.00 3.85
2630 5437 2.101249 AGTCTCGTAGTAGCTAGCTCGT 59.899 50.000 23.26 12.33 0.00 4.18
2638 5445 2.161808 TGCAGTTCAGTCTCGTAGTAGC 59.838 50.000 0.00 0.00 0.00 3.58
2639 5446 4.083217 ACTTGCAGTTCAGTCTCGTAGTAG 60.083 45.833 0.00 0.00 0.00 2.57
2640 5447 3.819337 ACTTGCAGTTCAGTCTCGTAGTA 59.181 43.478 0.00 0.00 0.00 1.82
2641 5448 2.623889 ACTTGCAGTTCAGTCTCGTAGT 59.376 45.455 0.00 0.00 0.00 2.73
2642 5449 3.290308 ACTTGCAGTTCAGTCTCGTAG 57.710 47.619 0.00 0.00 0.00 3.51
2644 5451 2.604046 AACTTGCAGTTCAGTCTCGT 57.396 45.000 0.00 0.00 31.77 4.18
2645 5452 3.244670 CAAACTTGCAGTTCAGTCTCG 57.755 47.619 2.65 0.00 37.47 4.04
2682 5489 4.590918 TGTAGGTTGACAGTTGGTTTTGA 58.409 39.130 0.00 0.00 0.00 2.69
2775 5585 1.429148 CCTCGTCGGTTGCTATTGGC 61.429 60.000 0.00 0.00 42.22 4.52
2872 5691 9.330063 TCGTTTATTAGATTGATTGAATGCTCT 57.670 29.630 0.00 0.00 0.00 4.09
2991 5814 2.960129 GCGGGAATCGGCAGTACG 60.960 66.667 0.00 0.00 38.81 3.67
2997 5820 2.305826 GAACTTTCGCGGGAATCGGC 62.306 60.000 16.24 3.15 39.69 5.54
3030 5858 0.109919 TCGAGTTCGTGGATGTGTCG 60.110 55.000 1.07 0.00 40.80 4.35
3174 6003 2.783510 GTTAATGGATGGGAAGGGGAGA 59.216 50.000 0.00 0.00 0.00 3.71
3273 6103 4.042398 CGACTATCTCAACCAATACCACG 58.958 47.826 0.00 0.00 0.00 4.94
3275 6105 3.181469 GCCGACTATCTCAACCAATACCA 60.181 47.826 0.00 0.00 0.00 3.25
3336 6166 1.371183 CTCCGACTTCCCAGCAACA 59.629 57.895 0.00 0.00 0.00 3.33
3353 7594 0.900647 AAGACTCTACCACCGCAGCT 60.901 55.000 0.00 0.00 0.00 4.24
3429 7670 4.220163 ACTCTGACGGAAAACTAGGTAAGG 59.780 45.833 0.00 0.00 0.00 2.69
3449 7691 2.593346 AGACAATGCAGATCCGACTC 57.407 50.000 0.00 0.00 0.00 3.36
3476 7718 0.449388 CATGCGAAAACTCAGCCTCC 59.551 55.000 0.00 0.00 0.00 4.30
3509 7751 0.314935 TAGACGTCGTTGACCCAACC 59.685 55.000 10.46 0.00 40.82 3.77
3511 7753 1.067425 CCATAGACGTCGTTGACCCAA 60.067 52.381 18.60 0.00 0.00 4.12
3514 7756 1.138047 CGCCATAGACGTCGTTGACC 61.138 60.000 18.60 10.23 0.00 4.02
3517 7759 1.342555 TTTCGCCATAGACGTCGTTG 58.657 50.000 10.46 11.52 0.00 4.10
3518 7760 1.924524 CATTTCGCCATAGACGTCGTT 59.075 47.619 10.46 0.00 0.00 3.85
3520 7762 0.852777 CCATTTCGCCATAGACGTCG 59.147 55.000 10.46 0.00 0.00 5.12
3553 7796 2.802057 CGTCATCGTCATCCTAAACCCC 60.802 54.545 0.00 0.00 0.00 4.95
3616 7859 0.596577 TCAAAGAGGGTCACGTCGAG 59.403 55.000 0.00 0.00 36.64 4.04
3618 7861 1.860676 TTTCAAAGAGGGTCACGTCG 58.139 50.000 0.00 0.00 36.64 5.12
3664 7908 5.324409 AGAATACCAACTCAAATTCCTGCA 58.676 37.500 0.00 0.00 0.00 4.41
3769 8016 6.476706 GCAAGAGTGTTTTTATGCTTGTCTTT 59.523 34.615 0.00 0.00 36.16 2.52
3846 8093 5.537188 ACCATTACGTAAAAACCTCACGTA 58.463 37.500 12.81 2.38 46.23 3.57
3848 8095 4.996062 ACCATTACGTAAAAACCTCACG 57.004 40.909 12.81 0.00 41.32 4.35
3849 8096 6.303021 TCAACCATTACGTAAAAACCTCAC 57.697 37.500 12.81 0.00 0.00 3.51
3850 8097 6.487331 ACATCAACCATTACGTAAAAACCTCA 59.513 34.615 12.81 0.00 0.00 3.86
3851 8098 6.799925 CACATCAACCATTACGTAAAAACCTC 59.200 38.462 12.81 0.00 0.00 3.85
3852 8099 6.294286 CCACATCAACCATTACGTAAAAACCT 60.294 38.462 12.81 0.00 0.00 3.50
3853 8100 5.859648 CCACATCAACCATTACGTAAAAACC 59.140 40.000 12.81 0.00 0.00 3.27
3854 8101 6.670233 TCCACATCAACCATTACGTAAAAAC 58.330 36.000 12.81 0.00 0.00 2.43
3855 8102 6.072397 CCTCCACATCAACCATTACGTAAAAA 60.072 38.462 12.81 0.00 0.00 1.94
3856 8103 5.413213 CCTCCACATCAACCATTACGTAAAA 59.587 40.000 12.81 0.00 0.00 1.52
3857 8104 4.938832 CCTCCACATCAACCATTACGTAAA 59.061 41.667 12.81 0.00 0.00 2.01
3858 8105 4.223255 TCCTCCACATCAACCATTACGTAA 59.777 41.667 11.02 11.02 0.00 3.18
3859 8106 3.770388 TCCTCCACATCAACCATTACGTA 59.230 43.478 0.00 0.00 0.00 3.57
3860 8107 2.569853 TCCTCCACATCAACCATTACGT 59.430 45.455 0.00 0.00 0.00 3.57
3861 8108 3.260475 TCCTCCACATCAACCATTACG 57.740 47.619 0.00 0.00 0.00 3.18
3862 8109 4.589908 ACTTCCTCCACATCAACCATTAC 58.410 43.478 0.00 0.00 0.00 1.89
3863 8110 4.927267 ACTTCCTCCACATCAACCATTA 57.073 40.909 0.00 0.00 0.00 1.90
3864 8111 3.814504 ACTTCCTCCACATCAACCATT 57.185 42.857 0.00 0.00 0.00 3.16
3865 8112 3.814504 AACTTCCTCCACATCAACCAT 57.185 42.857 0.00 0.00 0.00 3.55
3866 8113 4.715534 TTAACTTCCTCCACATCAACCA 57.284 40.909 0.00 0.00 0.00 3.67
3867 8114 5.105756 CCAATTAACTTCCTCCACATCAACC 60.106 44.000 0.00 0.00 0.00 3.77
3868 8115 5.710099 TCCAATTAACTTCCTCCACATCAAC 59.290 40.000 0.00 0.00 0.00 3.18
3869 8116 5.886609 TCCAATTAACTTCCTCCACATCAA 58.113 37.500 0.00 0.00 0.00 2.57
3870 8117 5.512942 TCCAATTAACTTCCTCCACATCA 57.487 39.130 0.00 0.00 0.00 3.07
3871 8118 6.122277 TCATCCAATTAACTTCCTCCACATC 58.878 40.000 0.00 0.00 0.00 3.06
3872 8119 6.078456 TCATCCAATTAACTTCCTCCACAT 57.922 37.500 0.00 0.00 0.00 3.21
3873 8120 5.512942 TCATCCAATTAACTTCCTCCACA 57.487 39.130 0.00 0.00 0.00 4.17
3874 8121 6.180472 TCTTCATCCAATTAACTTCCTCCAC 58.820 40.000 0.00 0.00 0.00 4.02
3875 8122 6.387192 TCTTCATCCAATTAACTTCCTCCA 57.613 37.500 0.00 0.00 0.00 3.86
3876 8123 7.888250 AATCTTCATCCAATTAACTTCCTCC 57.112 36.000 0.00 0.00 0.00 4.30
3877 8124 9.620259 ACTAATCTTCATCCAATTAACTTCCTC 57.380 33.333 0.00 0.00 0.00 3.71
3878 8125 9.401058 CACTAATCTTCATCCAATTAACTTCCT 57.599 33.333 0.00 0.00 0.00 3.36
3879 8126 8.624776 CCACTAATCTTCATCCAATTAACTTCC 58.375 37.037 0.00 0.00 0.00 3.46
3880 8127 8.131731 GCCACTAATCTTCATCCAATTAACTTC 58.868 37.037 0.00 0.00 0.00 3.01
3881 8128 7.836183 AGCCACTAATCTTCATCCAATTAACTT 59.164 33.333 0.00 0.00 0.00 2.66
3882 8129 7.284034 CAGCCACTAATCTTCATCCAATTAACT 59.716 37.037 0.00 0.00 0.00 2.24
3883 8130 7.420800 CAGCCACTAATCTTCATCCAATTAAC 58.579 38.462 0.00 0.00 0.00 2.01
3884 8131 6.547141 CCAGCCACTAATCTTCATCCAATTAA 59.453 38.462 0.00 0.00 0.00 1.40
3885 8132 6.064060 CCAGCCACTAATCTTCATCCAATTA 58.936 40.000 0.00 0.00 0.00 1.40
3886 8133 4.891756 CCAGCCACTAATCTTCATCCAATT 59.108 41.667 0.00 0.00 0.00 2.32
3887 8134 4.166725 TCCAGCCACTAATCTTCATCCAAT 59.833 41.667 0.00 0.00 0.00 3.16
3888 8135 3.523157 TCCAGCCACTAATCTTCATCCAA 59.477 43.478 0.00 0.00 0.00 3.53
3889 8136 3.114606 TCCAGCCACTAATCTTCATCCA 58.885 45.455 0.00 0.00 0.00 3.41
3890 8137 3.737850 CTCCAGCCACTAATCTTCATCC 58.262 50.000 0.00 0.00 0.00 3.51
3891 8138 3.137533 GCTCCAGCCACTAATCTTCATC 58.862 50.000 0.00 0.00 34.31 2.92
3892 8139 3.205784 GCTCCAGCCACTAATCTTCAT 57.794 47.619 0.00 0.00 34.31 2.57
3893 8140 2.698855 GCTCCAGCCACTAATCTTCA 57.301 50.000 0.00 0.00 34.31 3.02
3907 8154 3.579302 CAAGTGGGGTGGGCTCCA 61.579 66.667 2.29 0.00 44.53 3.86
3908 8155 2.366153 TTTCAAGTGGGGTGGGCTCC 62.366 60.000 0.00 0.00 35.21 4.70
3909 8156 0.251787 ATTTCAAGTGGGGTGGGCTC 60.252 55.000 0.00 0.00 0.00 4.70
3910 8157 0.251787 GATTTCAAGTGGGGTGGGCT 60.252 55.000 0.00 0.00 0.00 5.19
3911 8158 0.541764 TGATTTCAAGTGGGGTGGGC 60.542 55.000 0.00 0.00 0.00 5.36
3912 8159 1.549203 CTGATTTCAAGTGGGGTGGG 58.451 55.000 0.00 0.00 0.00 4.61
3913 8160 1.549203 CCTGATTTCAAGTGGGGTGG 58.451 55.000 0.00 0.00 0.00 4.61
3914 8161 1.549203 CCCTGATTTCAAGTGGGGTG 58.451 55.000 0.00 0.00 34.46 4.61
3917 8164 3.288099 CCCCCTGATTTCAAGTGGG 57.712 57.895 0.00 0.00 37.68 4.61
3932 8179 5.286760 TCCTAACTATAATCCTCTCCCCC 57.713 47.826 0.00 0.00 0.00 5.40
3933 8180 6.563163 TCTTCCTAACTATAATCCTCTCCCC 58.437 44.000 0.00 0.00 0.00 4.81
3934 8181 8.673456 AATCTTCCTAACTATAATCCTCTCCC 57.327 38.462 0.00 0.00 0.00 4.30
3937 8184 9.810870 ACGTAATCTTCCTAACTATAATCCTCT 57.189 33.333 0.00 0.00 0.00 3.69
3945 8192 9.937175 GTAACGTAACGTAATCTTCCTAACTAT 57.063 33.333 0.00 0.00 39.99 2.12
3946 8193 9.162764 AGTAACGTAACGTAATCTTCCTAACTA 57.837 33.333 0.00 0.00 39.99 2.24
3947 8194 8.045176 AGTAACGTAACGTAATCTTCCTAACT 57.955 34.615 0.00 0.00 39.99 2.24
3948 8195 8.675040 AAGTAACGTAACGTAATCTTCCTAAC 57.325 34.615 0.00 0.00 39.99 2.34
3950 8197 9.769093 GTAAAGTAACGTAACGTAATCTTCCTA 57.231 33.333 0.00 0.00 39.99 2.94
3951 8198 8.296713 TGTAAAGTAACGTAACGTAATCTTCCT 58.703 33.333 0.00 0.00 39.99 3.36
3952 8199 8.447787 TGTAAAGTAACGTAACGTAATCTTCC 57.552 34.615 0.00 0.00 39.99 3.46
3955 8202 9.722056 CCTATGTAAAGTAACGTAACGTAATCT 57.278 33.333 0.00 0.00 39.99 2.40
3956 8203 8.472236 GCCTATGTAAAGTAACGTAACGTAATC 58.528 37.037 0.00 0.00 39.99 1.75
3957 8204 8.190784 AGCCTATGTAAAGTAACGTAACGTAAT 58.809 33.333 0.00 0.00 39.99 1.89
3958 8205 7.484641 CAGCCTATGTAAAGTAACGTAACGTAA 59.515 37.037 0.00 0.00 39.99 3.18
3959 8206 6.966632 CAGCCTATGTAAAGTAACGTAACGTA 59.033 38.462 0.00 0.00 39.99 3.57
3960 8207 5.801947 CAGCCTATGTAAAGTAACGTAACGT 59.198 40.000 0.00 0.00 43.97 3.99
3961 8208 5.801947 ACAGCCTATGTAAAGTAACGTAACG 59.198 40.000 0.00 0.00 41.60 3.18
3962 8209 7.461938 CGAACAGCCTATGTAAAGTAACGTAAC 60.462 40.741 0.00 0.00 43.00 2.50
3963 8210 6.527722 CGAACAGCCTATGTAAAGTAACGTAA 59.472 38.462 0.00 0.00 43.00 3.18
3964 8211 6.029607 CGAACAGCCTATGTAAAGTAACGTA 58.970 40.000 0.00 0.00 43.00 3.57
3965 8212 4.860907 CGAACAGCCTATGTAAAGTAACGT 59.139 41.667 0.00 0.00 43.00 3.99
3966 8213 4.860907 ACGAACAGCCTATGTAAAGTAACG 59.139 41.667 0.00 0.00 43.00 3.18
3967 8214 7.253422 TCTACGAACAGCCTATGTAAAGTAAC 58.747 38.462 0.00 0.00 43.00 2.50
3968 8215 7.395190 TCTACGAACAGCCTATGTAAAGTAA 57.605 36.000 0.00 0.00 43.00 2.24
3969 8216 7.423199 CATCTACGAACAGCCTATGTAAAGTA 58.577 38.462 0.00 0.00 43.00 2.24
3970 8217 5.909621 TCTACGAACAGCCTATGTAAAGT 57.090 39.130 0.00 0.00 43.00 2.66
3971 8218 5.692204 CCATCTACGAACAGCCTATGTAAAG 59.308 44.000 0.00 0.00 43.00 1.85
3972 8219 5.361571 TCCATCTACGAACAGCCTATGTAAA 59.638 40.000 0.00 0.00 43.00 2.01
3973 8220 4.891168 TCCATCTACGAACAGCCTATGTAA 59.109 41.667 0.00 0.00 43.00 2.41
3974 8221 4.466827 TCCATCTACGAACAGCCTATGTA 58.533 43.478 0.00 0.00 43.00 2.29
3975 8222 3.296854 TCCATCTACGAACAGCCTATGT 58.703 45.455 0.00 0.00 46.97 2.29
3976 8223 3.858877 GCTCCATCTACGAACAGCCTATG 60.859 52.174 0.00 0.00 0.00 2.23
3977 8224 2.297597 GCTCCATCTACGAACAGCCTAT 59.702 50.000 0.00 0.00 0.00 2.57
3978 8225 1.681793 GCTCCATCTACGAACAGCCTA 59.318 52.381 0.00 0.00 0.00 3.93
3979 8226 0.461961 GCTCCATCTACGAACAGCCT 59.538 55.000 0.00 0.00 0.00 4.58
3980 8227 0.175760 TGCTCCATCTACGAACAGCC 59.824 55.000 0.00 0.00 0.00 4.85
3981 8228 2.231215 ATGCTCCATCTACGAACAGC 57.769 50.000 0.00 0.00 0.00 4.40
3982 8229 4.618912 CGATAATGCTCCATCTACGAACAG 59.381 45.833 0.00 0.00 0.00 3.16
3983 8230 4.277423 TCGATAATGCTCCATCTACGAACA 59.723 41.667 0.00 0.00 0.00 3.18
3984 8231 4.795268 TCGATAATGCTCCATCTACGAAC 58.205 43.478 0.00 0.00 0.00 3.95
3985 8232 5.644977 ATCGATAATGCTCCATCTACGAA 57.355 39.130 0.00 0.00 30.76 3.85
3986 8233 5.644977 AATCGATAATGCTCCATCTACGA 57.355 39.130 0.00 0.00 0.00 3.43
3987 8234 6.712241 AAAATCGATAATGCTCCATCTACG 57.288 37.500 0.00 0.00 0.00 3.51
3988 8235 8.087982 TGAAAAATCGATAATGCTCCATCTAC 57.912 34.615 0.00 0.00 0.00 2.59
3989 8236 8.675705 TTGAAAAATCGATAATGCTCCATCTA 57.324 30.769 0.00 0.00 0.00 1.98
3990 8237 7.255381 CCTTGAAAAATCGATAATGCTCCATCT 60.255 37.037 0.00 0.00 0.00 2.90
3991 8238 6.860023 CCTTGAAAAATCGATAATGCTCCATC 59.140 38.462 0.00 0.00 0.00 3.51
3992 8239 6.239120 CCCTTGAAAAATCGATAATGCTCCAT 60.239 38.462 0.00 0.00 0.00 3.41
3993 8240 5.067674 CCCTTGAAAAATCGATAATGCTCCA 59.932 40.000 0.00 0.00 0.00 3.86
3994 8241 5.523369 CCCTTGAAAAATCGATAATGCTCC 58.477 41.667 0.00 0.00 0.00 4.70
3995 8242 4.978580 GCCCTTGAAAAATCGATAATGCTC 59.021 41.667 0.00 0.00 0.00 4.26
3996 8243 4.498009 CGCCCTTGAAAAATCGATAATGCT 60.498 41.667 0.00 0.00 0.00 3.79
3997 8244 3.730715 CGCCCTTGAAAAATCGATAATGC 59.269 43.478 0.00 0.00 0.00 3.56
3998 8245 3.730715 GCGCCCTTGAAAAATCGATAATG 59.269 43.478 0.00 0.00 0.00 1.90
3999 8246 3.632145 AGCGCCCTTGAAAAATCGATAAT 59.368 39.130 2.29 0.00 0.00 1.28
4000 8247 3.013921 AGCGCCCTTGAAAAATCGATAA 58.986 40.909 2.29 0.00 0.00 1.75
4001 8248 2.639065 AGCGCCCTTGAAAAATCGATA 58.361 42.857 2.29 0.00 0.00 2.92
4002 8249 1.463674 AGCGCCCTTGAAAAATCGAT 58.536 45.000 2.29 0.00 0.00 3.59
4003 8250 1.243902 AAGCGCCCTTGAAAAATCGA 58.756 45.000 2.29 0.00 0.00 3.59
4004 8251 2.064573 AAAGCGCCCTTGAAAAATCG 57.935 45.000 2.29 0.00 0.00 3.34
4285 8532 2.202743 GTACGCTGCAGCCGATCA 60.203 61.111 32.07 10.48 37.91 2.92
4520 8767 2.442413 GATCAGATCCTCTCTACGGGG 58.558 57.143 0.00 0.00 31.13 5.73
4627 8878 9.072375 TCATATGATCTTTTGACGATCTCTACT 57.928 33.333 0.00 0.00 38.43 2.57
4690 8965 4.576463 CCCAATCAGCTACTACATGTTTCC 59.424 45.833 2.30 0.00 0.00 3.13
4720 8998 4.274602 TGTTTCAGCAGGTAAACCGATA 57.725 40.909 0.00 0.00 42.08 2.92
4727 9005 6.597672 CAGGTAATACATGTTTCAGCAGGTAA 59.402 38.462 2.30 0.00 38.77 2.85
4746 9024 2.354704 CGCCATGAAGAAGGTCAGGTAA 60.355 50.000 0.00 0.00 0.00 2.85
4773 9051 2.350007 CGATAAAAACACACACACCCCG 60.350 50.000 0.00 0.00 0.00 5.73
4788 9066 7.170320 GTCCTGTTGTAGTGAGTTTTCGATAAA 59.830 37.037 0.00 0.00 0.00 1.40
4793 9071 3.493503 GGTCCTGTTGTAGTGAGTTTTCG 59.506 47.826 0.00 0.00 0.00 3.46
4794 9072 3.813724 GGGTCCTGTTGTAGTGAGTTTTC 59.186 47.826 0.00 0.00 0.00 2.29
4798 9076 2.097110 TGGGTCCTGTTGTAGTGAGT 57.903 50.000 0.00 0.00 0.00 3.41
4799 9077 2.567169 TGATGGGTCCTGTTGTAGTGAG 59.433 50.000 0.00 0.00 0.00 3.51
4949 9227 1.947456 ACTCTTGCAACGGTTCCTTTC 59.053 47.619 0.00 0.00 0.00 2.62
5018 9296 5.814705 AGATGAGATTTGAATTCCTCGACAC 59.185 40.000 2.27 0.00 0.00 3.67
5444 9750 1.349357 TGATGATGTTCCCGGTTCACA 59.651 47.619 0.00 0.00 0.00 3.58
5633 9939 3.452474 CAGGCAACCAATGTTTCGAAAA 58.548 40.909 13.10 3.75 30.42 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.