Multiple sequence alignment - TraesCS3D01G354600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G354600 chr3D 100.000 2739 0 0 1 2739 465175691 465178429 0.000000e+00 5059
1 TraesCS3D01G354600 chr3D 97.320 2351 61 2 1 2350 516403664 516401315 0.000000e+00 3991
2 TraesCS3D01G354600 chr1D 99.147 2346 19 1 1 2345 487307374 487305029 0.000000e+00 4220
3 TraesCS3D01G354600 chr1D 98.682 2352 25 4 1 2351 30698305 30695959 0.000000e+00 4167
4 TraesCS3D01G354600 chr2B 97.324 2354 57 5 1 2350 431356 433707 0.000000e+00 3993
5 TraesCS3D01G354600 chr7A 95.746 2351 97 3 1 2350 303752226 303749878 0.000000e+00 3784
6 TraesCS3D01G354600 chr5A 94.907 2356 94 15 1 2351 168957345 168959679 0.000000e+00 3663
7 TraesCS3D01G354600 chr1B 94.067 2073 110 11 1 2071 40302773 40300712 0.000000e+00 3134
8 TraesCS3D01G354600 chr4B 93.485 2072 129 6 1 2071 272432847 272430781 0.000000e+00 3073
9 TraesCS3D01G354600 chr4B 91.373 255 21 1 2097 2351 657005635 657005888 5.610000e-92 348
10 TraesCS3D01G354600 chr3A 96.913 1555 48 0 1 1555 706202316 706203870 0.000000e+00 2606
11 TraesCS3D01G354600 chr3A 91.121 214 13 5 2531 2739 608479872 608480084 4.460000e-73 285
12 TraesCS3D01G354600 chr2A 94.668 769 37 2 1588 2352 130064797 130064029 0.000000e+00 1190
13 TraesCS3D01G354600 chr3B 89.614 414 12 13 2353 2739 618687730 618688139 5.270000e-137 497
14 TraesCS3D01G354600 chr6B 93.878 245 14 1 2106 2350 658921664 658921421 4.310000e-98 368


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G354600 chr3D 465175691 465178429 2738 False 5059 5059 100.000 1 2739 1 chr3D.!!$F1 2738
1 TraesCS3D01G354600 chr3D 516401315 516403664 2349 True 3991 3991 97.320 1 2350 1 chr3D.!!$R1 2349
2 TraesCS3D01G354600 chr1D 487305029 487307374 2345 True 4220 4220 99.147 1 2345 1 chr1D.!!$R2 2344
3 TraesCS3D01G354600 chr1D 30695959 30698305 2346 True 4167 4167 98.682 1 2351 1 chr1D.!!$R1 2350
4 TraesCS3D01G354600 chr2B 431356 433707 2351 False 3993 3993 97.324 1 2350 1 chr2B.!!$F1 2349
5 TraesCS3D01G354600 chr7A 303749878 303752226 2348 True 3784 3784 95.746 1 2350 1 chr7A.!!$R1 2349
6 TraesCS3D01G354600 chr5A 168957345 168959679 2334 False 3663 3663 94.907 1 2351 1 chr5A.!!$F1 2350
7 TraesCS3D01G354600 chr1B 40300712 40302773 2061 True 3134 3134 94.067 1 2071 1 chr1B.!!$R1 2070
8 TraesCS3D01G354600 chr4B 272430781 272432847 2066 True 3073 3073 93.485 1 2071 1 chr4B.!!$R1 2070
9 TraesCS3D01G354600 chr3A 706202316 706203870 1554 False 2606 2606 96.913 1 1555 1 chr3A.!!$F2 1554
10 TraesCS3D01G354600 chr2A 130064029 130064797 768 True 1190 1190 94.668 1588 2352 1 chr2A.!!$R1 764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
949 962 6.65332 TCTCACCAATTGTGTACCTATTGTTC 59.347 38.462 4.43 0.0 45.61 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2454 2474 0.034337 GGTGAGTACCTGCGGAAACA 59.966 55.0 0.0 0.0 43.97 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
874 884 9.547753 CCTTTATTGCTTAGATTAGCTCTAACA 57.452 33.333 0.00 0.00 40.72 2.41
949 962 6.653320 TCTCACCAATTGTGTACCTATTGTTC 59.347 38.462 4.43 0.00 45.61 3.18
1054 1067 5.810587 GCGAGTAGATTTGTCCAAGATACAA 59.189 40.000 0.00 0.00 35.12 2.41
1517 1530 3.452474 CAGGCAACCAATGTTTCGAAAA 58.548 40.909 13.10 3.75 30.42 2.29
1706 1723 1.349357 TGATGATGTTCCCGGTTCACA 59.651 47.619 0.00 0.00 0.00 3.58
2132 2152 5.814705 AGATGAGATTTGAATTCCTCGACAC 59.185 40.000 2.27 0.00 0.00 3.67
2201 2221 1.947456 ACTCTTGCAACGGTTCCTTTC 59.053 47.619 0.00 0.00 0.00 2.62
2352 2372 2.097110 TGGGTCCTGTTGTAGTGAGT 57.903 50.000 0.00 0.00 0.00 3.41
2353 2373 2.404559 TGGGTCCTGTTGTAGTGAGTT 58.595 47.619 0.00 0.00 0.00 3.01
2354 2374 2.775384 TGGGTCCTGTTGTAGTGAGTTT 59.225 45.455 0.00 0.00 0.00 2.66
2355 2375 3.201266 TGGGTCCTGTTGTAGTGAGTTTT 59.799 43.478 0.00 0.00 0.00 2.43
2356 2376 3.813724 GGGTCCTGTTGTAGTGAGTTTTC 59.186 47.826 0.00 0.00 0.00 2.29
2357 2377 3.493503 GGTCCTGTTGTAGTGAGTTTTCG 59.506 47.826 0.00 0.00 0.00 3.46
2358 2378 4.365723 GTCCTGTTGTAGTGAGTTTTCGA 58.634 43.478 0.00 0.00 0.00 3.71
2359 2379 4.989168 GTCCTGTTGTAGTGAGTTTTCGAT 59.011 41.667 0.00 0.00 0.00 3.59
2360 2380 6.154445 GTCCTGTTGTAGTGAGTTTTCGATA 58.846 40.000 0.00 0.00 0.00 2.92
2361 2381 6.643770 GTCCTGTTGTAGTGAGTTTTCGATAA 59.356 38.462 0.00 0.00 0.00 1.75
2362 2382 7.170320 GTCCTGTTGTAGTGAGTTTTCGATAAA 59.830 37.037 0.00 0.00 0.00 1.40
2363 2383 7.711772 TCCTGTTGTAGTGAGTTTTCGATAAAA 59.288 33.333 0.00 0.00 32.15 1.52
2364 2384 8.339714 CCTGTTGTAGTGAGTTTTCGATAAAAA 58.660 33.333 0.00 0.00 36.37 1.94
2375 2395 4.555348 TTCGATAAAAACACACACACCC 57.445 40.909 0.00 0.00 0.00 4.61
2376 2396 2.879646 TCGATAAAAACACACACACCCC 59.120 45.455 0.00 0.00 0.00 4.95
2377 2397 2.350007 CGATAAAAACACACACACCCCG 60.350 50.000 0.00 0.00 0.00 5.73
2378 2398 1.390565 TAAAAACACACACACCCCGG 58.609 50.000 0.00 0.00 0.00 5.73
2379 2399 0.323542 AAAAACACACACACCCCGGA 60.324 50.000 0.73 0.00 0.00 5.14
2380 2400 0.323542 AAAACACACACACCCCGGAA 60.324 50.000 0.73 0.00 0.00 4.30
2381 2401 0.750182 AAACACACACACCCCGGAAG 60.750 55.000 0.73 0.00 0.00 3.46
2382 2402 2.978010 CACACACACCCCGGAAGC 60.978 66.667 0.73 0.00 0.00 3.86
2383 2403 4.265056 ACACACACCCCGGAAGCC 62.265 66.667 0.73 0.00 0.00 4.35
2391 2411 4.794648 CCCGGAAGCCGCCATGAA 62.795 66.667 0.73 0.00 46.86 2.57
2392 2412 3.204827 CCGGAAGCCGCCATGAAG 61.205 66.667 0.00 0.00 46.86 3.02
2393 2413 2.125147 CGGAAGCCGCCATGAAGA 60.125 61.111 0.00 0.00 41.17 2.87
2394 2414 1.745115 CGGAAGCCGCCATGAAGAA 60.745 57.895 0.00 0.00 41.17 2.52
2395 2415 1.709147 CGGAAGCCGCCATGAAGAAG 61.709 60.000 0.00 0.00 41.17 2.85
2396 2416 1.379642 GGAAGCCGCCATGAAGAAGG 61.380 60.000 0.00 0.00 0.00 3.46
2397 2417 0.678048 GAAGCCGCCATGAAGAAGGT 60.678 55.000 0.00 0.00 0.00 3.50
2398 2418 0.678048 AAGCCGCCATGAAGAAGGTC 60.678 55.000 0.00 0.00 0.00 3.85
2399 2419 1.377202 GCCGCCATGAAGAAGGTCA 60.377 57.895 0.00 0.00 0.00 4.02
2400 2420 1.372087 GCCGCCATGAAGAAGGTCAG 61.372 60.000 0.00 0.00 0.00 3.51
2401 2421 0.745845 CCGCCATGAAGAAGGTCAGG 60.746 60.000 0.00 0.00 0.00 3.86
2402 2422 0.036010 CGCCATGAAGAAGGTCAGGT 60.036 55.000 0.00 0.00 0.00 4.00
2403 2423 1.207089 CGCCATGAAGAAGGTCAGGTA 59.793 52.381 0.00 0.00 0.00 3.08
2404 2424 2.354704 CGCCATGAAGAAGGTCAGGTAA 60.355 50.000 0.00 0.00 0.00 2.85
2405 2425 3.682718 CGCCATGAAGAAGGTCAGGTAAT 60.683 47.826 0.00 0.00 0.00 1.89
2406 2426 4.442893 CGCCATGAAGAAGGTCAGGTAATA 60.443 45.833 0.00 0.00 0.00 0.98
2407 2427 4.816925 GCCATGAAGAAGGTCAGGTAATAC 59.183 45.833 0.00 0.00 0.00 1.89
2408 2428 5.629133 GCCATGAAGAAGGTCAGGTAATACA 60.629 44.000 0.00 0.00 0.00 2.29
2409 2429 6.595682 CCATGAAGAAGGTCAGGTAATACAT 58.404 40.000 0.00 0.00 0.00 2.29
2410 2430 6.484643 CCATGAAGAAGGTCAGGTAATACATG 59.515 42.308 0.00 0.00 0.00 3.21
2411 2431 6.620877 TGAAGAAGGTCAGGTAATACATGT 57.379 37.500 2.69 2.69 30.95 3.21
2412 2432 7.016153 TGAAGAAGGTCAGGTAATACATGTT 57.984 36.000 2.30 0.00 30.95 2.71
2413 2433 7.458397 TGAAGAAGGTCAGGTAATACATGTTT 58.542 34.615 2.30 0.95 30.95 2.83
2414 2434 7.606456 TGAAGAAGGTCAGGTAATACATGTTTC 59.394 37.037 2.30 7.88 30.95 2.78
2415 2435 7.016153 AGAAGGTCAGGTAATACATGTTTCA 57.984 36.000 2.30 0.00 30.95 2.69
2416 2436 7.106239 AGAAGGTCAGGTAATACATGTTTCAG 58.894 38.462 2.30 0.00 30.95 3.02
2417 2437 5.186198 AGGTCAGGTAATACATGTTTCAGC 58.814 41.667 2.30 0.00 30.95 4.26
2418 2438 4.941263 GGTCAGGTAATACATGTTTCAGCA 59.059 41.667 2.30 0.00 30.95 4.41
2419 2439 5.065218 GGTCAGGTAATACATGTTTCAGCAG 59.935 44.000 2.30 0.00 30.95 4.24
2420 2440 5.065218 GTCAGGTAATACATGTTTCAGCAGG 59.935 44.000 2.30 0.00 30.95 4.85
2421 2441 4.943705 CAGGTAATACATGTTTCAGCAGGT 59.056 41.667 2.30 0.00 37.20 4.00
2422 2442 6.070481 TCAGGTAATACATGTTTCAGCAGGTA 60.070 38.462 2.30 0.00 39.45 3.08
2423 2443 6.597672 CAGGTAATACATGTTTCAGCAGGTAA 59.402 38.462 2.30 0.00 38.77 2.85
2424 2444 7.120579 CAGGTAATACATGTTTCAGCAGGTAAA 59.879 37.037 2.30 0.00 38.77 2.01
2425 2445 7.120726 AGGTAATACATGTTTCAGCAGGTAAAC 59.879 37.037 2.30 0.00 38.77 2.01
2426 2446 5.897377 ATACATGTTTCAGCAGGTAAACC 57.103 39.130 2.30 0.00 38.77 3.27
2427 2447 2.552315 ACATGTTTCAGCAGGTAAACCG 59.448 45.455 0.00 0.00 42.08 4.44
2428 2448 2.623878 TGTTTCAGCAGGTAAACCGA 57.376 45.000 0.00 0.00 42.08 4.69
2429 2449 3.134574 TGTTTCAGCAGGTAAACCGAT 57.865 42.857 0.00 0.00 42.08 4.18
2430 2450 4.274602 TGTTTCAGCAGGTAAACCGATA 57.725 40.909 0.00 0.00 42.08 2.92
2431 2451 4.643463 TGTTTCAGCAGGTAAACCGATAA 58.357 39.130 0.00 0.00 42.08 1.75
2432 2452 5.250200 TGTTTCAGCAGGTAAACCGATAAT 58.750 37.500 0.00 0.00 42.08 1.28
2433 2453 6.408035 TGTTTCAGCAGGTAAACCGATAATA 58.592 36.000 0.00 0.00 42.08 0.98
2434 2454 7.051623 TGTTTCAGCAGGTAAACCGATAATAT 58.948 34.615 0.00 0.00 42.08 1.28
2435 2455 8.205512 TGTTTCAGCAGGTAAACCGATAATATA 58.794 33.333 0.00 0.00 42.08 0.86
2436 2456 9.048446 GTTTCAGCAGGTAAACCGATAATATAA 57.952 33.333 0.00 0.00 42.08 0.98
2437 2457 8.597662 TTCAGCAGGTAAACCGATAATATAAC 57.402 34.615 0.00 0.00 42.08 1.89
2438 2458 7.156673 TCAGCAGGTAAACCGATAATATAACC 58.843 38.462 0.00 0.00 42.08 2.85
2439 2459 6.370718 CAGCAGGTAAACCGATAATATAACCC 59.629 42.308 0.00 0.00 42.08 4.11
2440 2460 6.043474 AGCAGGTAAACCGATAATATAACCCA 59.957 38.462 0.00 0.00 42.08 4.51
2441 2461 6.711645 GCAGGTAAACCGATAATATAACCCAA 59.288 38.462 0.00 0.00 42.08 4.12
2442 2462 7.392393 GCAGGTAAACCGATAATATAACCCAAT 59.608 37.037 0.00 0.00 42.08 3.16
2443 2463 8.943002 CAGGTAAACCGATAATATAACCCAATC 58.057 37.037 0.00 0.00 42.08 2.67
2444 2464 8.662255 AGGTAAACCGATAATATAACCCAATCA 58.338 33.333 0.00 0.00 42.08 2.57
2445 2465 8.943002 GGTAAACCGATAATATAACCCAATCAG 58.057 37.037 0.00 0.00 0.00 2.90
2446 2466 7.448748 AAACCGATAATATAACCCAATCAGC 57.551 36.000 0.00 0.00 0.00 4.26
2447 2467 6.374417 ACCGATAATATAACCCAATCAGCT 57.626 37.500 0.00 0.00 0.00 4.24
2448 2468 7.490657 ACCGATAATATAACCCAATCAGCTA 57.509 36.000 0.00 0.00 0.00 3.32
2449 2469 7.328737 ACCGATAATATAACCCAATCAGCTAC 58.671 38.462 0.00 0.00 0.00 3.58
2450 2470 7.180408 ACCGATAATATAACCCAATCAGCTACT 59.820 37.037 0.00 0.00 0.00 2.57
2451 2471 8.692710 CCGATAATATAACCCAATCAGCTACTA 58.307 37.037 0.00 0.00 0.00 1.82
2452 2472 9.517609 CGATAATATAACCCAATCAGCTACTAC 57.482 37.037 0.00 0.00 0.00 2.73
2456 2476 4.844349 AACCCAATCAGCTACTACATGT 57.156 40.909 2.69 2.69 0.00 3.21
2457 2477 4.844349 ACCCAATCAGCTACTACATGTT 57.156 40.909 2.30 0.00 0.00 2.71
2458 2478 5.179452 ACCCAATCAGCTACTACATGTTT 57.821 39.130 2.30 0.00 0.00 2.83
2459 2479 5.186198 ACCCAATCAGCTACTACATGTTTC 58.814 41.667 2.30 0.00 0.00 2.78
2460 2480 4.576463 CCCAATCAGCTACTACATGTTTCC 59.424 45.833 2.30 0.00 0.00 3.13
2461 2481 4.271049 CCAATCAGCTACTACATGTTTCCG 59.729 45.833 2.30 0.00 0.00 4.30
2462 2482 2.888594 TCAGCTACTACATGTTTCCGC 58.111 47.619 2.30 2.60 0.00 5.54
2463 2483 2.232696 TCAGCTACTACATGTTTCCGCA 59.767 45.455 2.30 0.00 0.00 5.69
2464 2484 2.604914 CAGCTACTACATGTTTCCGCAG 59.395 50.000 2.30 0.00 0.00 5.18
2483 2503 1.821216 GGTACTCACCACCAACATGG 58.179 55.000 0.00 0.00 45.04 3.66
2485 2505 6.805215 CAGGTACTCACCACCAACATGGTT 62.805 50.000 0.00 0.00 44.86 3.67
2486 2506 7.491791 CAGGTACTCACCACCAACATGGTTA 62.492 48.000 0.00 0.00 44.86 2.85
2495 2515 3.485947 CCAACATGGTTACCACAATCG 57.514 47.619 6.10 0.00 35.80 3.34
2496 2516 2.817258 CCAACATGGTTACCACAATCGT 59.183 45.455 6.10 0.00 35.80 3.73
2497 2517 3.254657 CCAACATGGTTACCACAATCGTT 59.745 43.478 6.10 2.82 35.80 3.85
2498 2518 4.472286 CAACATGGTTACCACAATCGTTC 58.528 43.478 6.10 0.00 35.80 3.95
2499 2519 3.745799 ACATGGTTACCACAATCGTTCA 58.254 40.909 6.10 0.00 35.80 3.18
2500 2520 4.331968 ACATGGTTACCACAATCGTTCAT 58.668 39.130 6.10 0.00 35.80 2.57
2501 2521 5.492895 ACATGGTTACCACAATCGTTCATA 58.507 37.500 6.10 0.00 35.80 2.15
2502 2522 6.119536 ACATGGTTACCACAATCGTTCATAT 58.880 36.000 6.10 0.00 35.80 1.78
2503 2523 6.038161 ACATGGTTACCACAATCGTTCATATG 59.962 38.462 6.10 0.00 35.80 1.78
2504 2524 5.735766 TGGTTACCACAATCGTTCATATGA 58.264 37.500 0.00 0.00 0.00 2.15
2505 2525 6.353323 TGGTTACCACAATCGTTCATATGAT 58.647 36.000 6.17 0.00 0.00 2.45
2506 2526 6.481976 TGGTTACCACAATCGTTCATATGATC 59.518 38.462 6.17 4.93 0.00 2.92
2507 2527 6.706270 GGTTACCACAATCGTTCATATGATCT 59.294 38.462 6.17 0.00 0.00 2.75
2508 2528 7.226720 GGTTACCACAATCGTTCATATGATCTT 59.773 37.037 6.17 0.00 0.00 2.40
2509 2529 8.612619 GTTACCACAATCGTTCATATGATCTTT 58.387 33.333 6.17 0.34 0.00 2.52
2510 2530 7.630242 ACCACAATCGTTCATATGATCTTTT 57.370 32.000 6.17 0.01 0.00 2.27
2511 2531 7.475015 ACCACAATCGTTCATATGATCTTTTG 58.525 34.615 6.17 13.08 0.00 2.44
2512 2532 7.336679 ACCACAATCGTTCATATGATCTTTTGA 59.663 33.333 20.81 10.10 0.00 2.69
2513 2533 7.641411 CCACAATCGTTCATATGATCTTTTGAC 59.359 37.037 20.81 10.24 0.00 3.18
2514 2534 7.371615 CACAATCGTTCATATGATCTTTTGACG 59.628 37.037 20.81 18.19 0.00 4.35
2515 2535 7.277760 ACAATCGTTCATATGATCTTTTGACGA 59.722 33.333 21.93 21.93 0.00 4.20
2516 2536 7.953158 ATCGTTCATATGATCTTTTGACGAT 57.047 32.000 23.69 23.69 32.67 3.73
2517 2537 7.394870 TCGTTCATATGATCTTTTGACGATC 57.605 36.000 17.95 0.00 38.17 3.69
2518 2538 7.203218 TCGTTCATATGATCTTTTGACGATCT 58.797 34.615 17.95 0.00 38.43 2.75
2519 2539 7.379797 TCGTTCATATGATCTTTTGACGATCTC 59.620 37.037 17.95 0.00 38.43 2.75
2520 2540 7.380870 CGTTCATATGATCTTTTGACGATCTCT 59.619 37.037 15.41 0.00 38.43 3.10
2521 2541 9.684448 GTTCATATGATCTTTTGACGATCTCTA 57.316 33.333 6.17 0.00 38.43 2.43
2522 2542 9.684448 TTCATATGATCTTTTGACGATCTCTAC 57.316 33.333 6.17 0.00 38.43 2.59
2523 2543 9.072375 TCATATGATCTTTTGACGATCTCTACT 57.928 33.333 0.00 0.00 38.43 2.57
2524 2544 9.127006 CATATGATCTTTTGACGATCTCTACTG 57.873 37.037 0.00 0.00 38.43 2.74
2525 2545 6.516739 TGATCTTTTGACGATCTCTACTGT 57.483 37.500 0.00 0.00 38.43 3.55
2526 2546 6.325596 TGATCTTTTGACGATCTCTACTGTG 58.674 40.000 0.00 0.00 38.43 3.66
2527 2547 5.707242 TCTTTTGACGATCTCTACTGTGT 57.293 39.130 0.00 0.00 0.00 3.72
2528 2548 6.812879 TCTTTTGACGATCTCTACTGTGTA 57.187 37.500 0.00 0.00 0.00 2.90
2529 2549 6.609533 TCTTTTGACGATCTCTACTGTGTAC 58.390 40.000 0.00 0.00 0.00 2.90
2530 2550 4.595198 TTGACGATCTCTACTGTGTACG 57.405 45.455 0.00 0.00 0.00 3.67
2531 2551 3.593096 TGACGATCTCTACTGTGTACGT 58.407 45.455 0.00 0.00 35.53 3.57
2532 2552 3.999001 TGACGATCTCTACTGTGTACGTT 59.001 43.478 0.00 0.00 33.10 3.99
2533 2553 4.142966 TGACGATCTCTACTGTGTACGTTG 60.143 45.833 0.00 0.00 33.10 4.10
2534 2554 3.750130 ACGATCTCTACTGTGTACGTTGT 59.250 43.478 0.00 0.00 0.00 3.32
2535 2555 4.931601 ACGATCTCTACTGTGTACGTTGTA 59.068 41.667 0.00 0.00 0.00 2.41
2536 2556 5.583854 ACGATCTCTACTGTGTACGTTGTAT 59.416 40.000 0.00 0.00 0.00 2.29
2537 2557 6.758416 ACGATCTCTACTGTGTACGTTGTATA 59.242 38.462 0.00 0.00 0.00 1.47
2538 2558 7.062240 CGATCTCTACTGTGTACGTTGTATAC 58.938 42.308 0.00 0.00 0.00 1.47
2539 2559 7.042858 CGATCTCTACTGTGTACGTTGTATACT 60.043 40.741 4.17 0.00 0.00 2.12
2540 2560 7.531280 TCTCTACTGTGTACGTTGTATACTC 57.469 40.000 4.17 0.00 0.00 2.59
2541 2561 6.536582 TCTCTACTGTGTACGTTGTATACTCC 59.463 42.308 4.17 0.00 0.00 3.85
2542 2562 6.409704 TCTACTGTGTACGTTGTATACTCCT 58.590 40.000 4.17 0.00 0.00 3.69
2543 2563 7.555965 TCTACTGTGTACGTTGTATACTCCTA 58.444 38.462 4.17 0.00 0.00 2.94
2544 2564 8.040727 TCTACTGTGTACGTTGTATACTCCTAA 58.959 37.037 4.17 0.00 0.00 2.69
2545 2565 7.636150 ACTGTGTACGTTGTATACTCCTAAT 57.364 36.000 4.17 0.00 0.00 1.73
2546 2566 8.059798 ACTGTGTACGTTGTATACTCCTAATT 57.940 34.615 4.17 0.00 0.00 1.40
2547 2567 9.177608 ACTGTGTACGTTGTATACTCCTAATTA 57.822 33.333 4.17 0.00 0.00 1.40
2553 2573 8.946797 ACGTTGTATACTCCTAATTATACCCT 57.053 34.615 4.17 0.00 32.34 4.34
2554 2574 8.800332 ACGTTGTATACTCCTAATTATACCCTG 58.200 37.037 4.17 0.00 32.34 4.45
2555 2575 8.248945 CGTTGTATACTCCTAATTATACCCTGG 58.751 40.741 4.17 0.00 32.34 4.45
2556 2576 9.097946 GTTGTATACTCCTAATTATACCCTGGT 57.902 37.037 4.17 0.00 32.34 4.00
2558 2578 9.759473 TGTATACTCCTAATTATACCCTGGTAC 57.241 37.037 4.17 0.00 32.34 3.34
2559 2579 7.951347 ATACTCCTAATTATACCCTGGTACG 57.049 40.000 0.00 0.00 33.01 3.67
2560 2580 4.525874 ACTCCTAATTATACCCTGGTACGC 59.474 45.833 0.00 0.00 33.01 4.42
2561 2581 3.834231 TCCTAATTATACCCTGGTACGCC 59.166 47.826 0.00 0.00 33.01 5.68
2562 2582 2.825861 AATTATACCCTGGTACGCCG 57.174 50.000 0.00 0.00 37.67 6.46
2563 2583 1.999648 ATTATACCCTGGTACGCCGA 58.000 50.000 0.00 0.00 37.67 5.54
2564 2584 1.774110 TTATACCCTGGTACGCCGAA 58.226 50.000 0.00 0.00 37.67 4.30
2565 2585 1.032014 TATACCCTGGTACGCCGAAC 58.968 55.000 0.00 0.00 37.67 3.95
2577 2597 1.739618 CGCCGAACGTCATAGTAGAC 58.260 55.000 0.00 0.00 36.87 2.59
2585 2605 2.303707 GTCATAGTAGACGCTCTCGC 57.696 55.000 0.00 0.00 39.84 5.03
2586 2606 1.069771 GTCATAGTAGACGCTCTCGCC 60.070 57.143 0.00 0.00 39.84 5.54
2587 2607 0.238817 CATAGTAGACGCTCTCGCCC 59.761 60.000 0.00 0.00 39.84 6.13
2588 2608 0.108963 ATAGTAGACGCTCTCGCCCT 59.891 55.000 0.00 0.00 39.84 5.19
2589 2609 0.755079 TAGTAGACGCTCTCGCCCTA 59.245 55.000 0.00 0.00 39.84 3.53
2590 2610 0.533308 AGTAGACGCTCTCGCCCTAG 60.533 60.000 0.00 0.00 39.84 3.02
2591 2611 0.814812 GTAGACGCTCTCGCCCTAGT 60.815 60.000 0.00 0.00 39.84 2.57
2592 2612 0.814410 TAGACGCTCTCGCCCTAGTG 60.814 60.000 0.00 0.00 39.84 2.74
2593 2613 3.127352 GACGCTCTCGCCCTAGTGG 62.127 68.421 0.00 0.00 39.84 4.00
2603 2623 3.852558 CCCTAGTGGCCTAGCTAGT 57.147 57.895 19.31 3.10 39.56 2.57
2604 2624 1.623163 CCCTAGTGGCCTAGCTAGTC 58.377 60.000 19.31 6.63 39.56 2.59
2605 2625 1.133450 CCCTAGTGGCCTAGCTAGTCA 60.133 57.143 19.31 13.78 39.56 3.41
2606 2626 1.957877 CCTAGTGGCCTAGCTAGTCAC 59.042 57.143 25.01 25.01 39.56 3.67
2607 2627 1.957877 CTAGTGGCCTAGCTAGTCACC 59.042 57.143 27.00 21.47 34.63 4.02
2608 2628 0.336737 AGTGGCCTAGCTAGTCACCT 59.663 55.000 27.00 17.71 0.00 4.00
2609 2629 0.747852 GTGGCCTAGCTAGTCACCTC 59.252 60.000 23.29 16.73 0.00 3.85
2610 2630 0.752009 TGGCCTAGCTAGTCACCTCG 60.752 60.000 19.31 3.46 0.00 4.63
2611 2631 0.465824 GGCCTAGCTAGTCACCTCGA 60.466 60.000 19.31 0.00 0.00 4.04
2612 2632 1.611519 GCCTAGCTAGTCACCTCGAT 58.388 55.000 19.31 0.00 0.00 3.59
2613 2633 1.538075 GCCTAGCTAGTCACCTCGATC 59.462 57.143 19.31 0.00 0.00 3.69
2614 2634 2.852449 CCTAGCTAGTCACCTCGATCA 58.148 52.381 19.31 0.00 0.00 2.92
2615 2635 2.811431 CCTAGCTAGTCACCTCGATCAG 59.189 54.545 19.31 0.00 0.00 2.90
2616 2636 2.719531 AGCTAGTCACCTCGATCAGA 57.280 50.000 0.00 0.00 0.00 3.27
2617 2637 3.222173 AGCTAGTCACCTCGATCAGAT 57.778 47.619 0.00 0.00 0.00 2.90
2618 2638 3.146066 AGCTAGTCACCTCGATCAGATC 58.854 50.000 0.00 0.00 0.00 2.75
2619 2639 2.227865 GCTAGTCACCTCGATCAGATCC 59.772 54.545 4.73 0.00 0.00 3.36
2620 2640 2.746279 AGTCACCTCGATCAGATCCT 57.254 50.000 4.73 0.00 0.00 3.24
2621 2641 2.582052 AGTCACCTCGATCAGATCCTC 58.418 52.381 4.73 0.00 0.00 3.71
2622 2642 2.174639 AGTCACCTCGATCAGATCCTCT 59.825 50.000 4.73 0.00 0.00 3.69
2623 2643 2.552315 GTCACCTCGATCAGATCCTCTC 59.448 54.545 4.73 0.00 0.00 3.20
2624 2644 2.441375 TCACCTCGATCAGATCCTCTCT 59.559 50.000 4.73 0.00 33.14 3.10
2625 2645 3.648545 TCACCTCGATCAGATCCTCTCTA 59.351 47.826 4.73 0.00 31.13 2.43
2626 2646 3.751175 CACCTCGATCAGATCCTCTCTAC 59.249 52.174 4.73 0.00 31.13 2.59
2627 2647 3.000041 CCTCGATCAGATCCTCTCTACG 59.000 54.545 4.73 0.00 31.13 3.51
2628 2648 3.000041 CTCGATCAGATCCTCTCTACGG 59.000 54.545 4.73 0.00 31.13 4.02
2629 2649 2.080693 CGATCAGATCCTCTCTACGGG 58.919 57.143 4.73 0.00 31.13 5.28
2630 2650 2.442413 GATCAGATCCTCTCTACGGGG 58.558 57.143 0.00 0.00 31.13 5.73
2631 2651 1.519498 TCAGATCCTCTCTACGGGGA 58.481 55.000 0.00 0.00 31.13 4.81
2632 2652 1.422024 TCAGATCCTCTCTACGGGGAG 59.578 57.143 0.00 1.23 31.13 4.30
2633 2653 1.144093 CAGATCCTCTCTACGGGGAGT 59.856 57.143 6.76 0.00 35.11 3.85
2634 2654 2.372504 CAGATCCTCTCTACGGGGAGTA 59.627 54.545 6.76 0.00 35.11 2.59
2640 2660 3.522808 CTACGGGGAGTAGCGCTT 58.477 61.111 18.68 0.00 45.35 4.68
2641 2661 1.359475 CTACGGGGAGTAGCGCTTC 59.641 63.158 18.68 11.64 45.35 3.86
2642 2662 2.073037 CTACGGGGAGTAGCGCTTCC 62.073 65.000 18.68 18.39 45.35 3.46
2643 2663 2.842188 TACGGGGAGTAGCGCTTCCA 62.842 60.000 25.55 6.19 45.18 3.53
2644 2664 2.501610 GGGGAGTAGCGCTTCCAG 59.498 66.667 25.55 0.00 45.18 3.86
2645 2665 2.501610 GGGAGTAGCGCTTCCAGG 59.498 66.667 25.55 0.00 42.76 4.45
2646 2666 2.501610 GGAGTAGCGCTTCCAGGG 59.498 66.667 18.68 0.00 0.00 4.45
2647 2667 2.058595 GGAGTAGCGCTTCCAGGGA 61.059 63.158 18.68 0.00 0.00 4.20
2648 2668 1.142097 GAGTAGCGCTTCCAGGGAC 59.858 63.158 18.68 5.50 0.00 4.46
2649 2669 2.187163 GTAGCGCTTCCAGGGACC 59.813 66.667 18.68 0.00 0.00 4.46
2650 2670 2.284331 TAGCGCTTCCAGGGACCA 60.284 61.111 18.68 0.00 0.00 4.02
2651 2671 1.689233 TAGCGCTTCCAGGGACCAT 60.689 57.895 18.68 0.00 0.00 3.55
2652 2672 1.971505 TAGCGCTTCCAGGGACCATG 61.972 60.000 18.68 0.00 0.00 3.66
2653 2673 2.124570 CGCTTCCAGGGACCATGG 60.125 66.667 19.53 19.53 39.33 3.66
2654 2674 2.971598 CGCTTCCAGGGACCATGGT 61.972 63.158 24.06 19.89 39.01 3.55
2655 2675 1.379044 GCTTCCAGGGACCATGGTG 60.379 63.158 25.52 18.19 39.01 4.17
2656 2676 1.852157 GCTTCCAGGGACCATGGTGA 61.852 60.000 25.52 10.25 39.01 4.02
2657 2677 0.254178 CTTCCAGGGACCATGGTGAG 59.746 60.000 25.52 18.31 39.01 3.51
2658 2678 0.475632 TTCCAGGGACCATGGTGAGT 60.476 55.000 25.52 2.37 39.01 3.41
2659 2679 0.909610 TCCAGGGACCATGGTGAGTC 60.910 60.000 25.52 7.54 39.01 3.36
2669 2689 3.786495 TGGTGAGTCCAGGCTAGAA 57.214 52.632 0.00 0.00 41.93 2.10
2670 2690 1.561643 TGGTGAGTCCAGGCTAGAAG 58.438 55.000 0.00 0.00 41.93 2.85
2671 2691 1.077169 TGGTGAGTCCAGGCTAGAAGA 59.923 52.381 0.00 0.00 41.93 2.87
2672 2692 2.180276 GGTGAGTCCAGGCTAGAAGAA 58.820 52.381 0.00 0.00 35.97 2.52
2673 2693 2.167487 GGTGAGTCCAGGCTAGAAGAAG 59.833 54.545 0.00 0.00 35.97 2.85
2674 2694 3.093057 GTGAGTCCAGGCTAGAAGAAGA 58.907 50.000 0.00 0.00 0.00 2.87
2675 2695 3.511934 GTGAGTCCAGGCTAGAAGAAGAA 59.488 47.826 0.00 0.00 0.00 2.52
2676 2696 4.021016 GTGAGTCCAGGCTAGAAGAAGAAA 60.021 45.833 0.00 0.00 0.00 2.52
2677 2697 4.221703 TGAGTCCAGGCTAGAAGAAGAAAG 59.778 45.833 0.00 0.00 0.00 2.62
2678 2698 3.055458 AGTCCAGGCTAGAAGAAGAAAGC 60.055 47.826 0.00 0.00 0.00 3.51
2679 2699 2.906389 TCCAGGCTAGAAGAAGAAAGCA 59.094 45.455 0.00 0.00 36.68 3.91
2680 2700 3.006247 CCAGGCTAGAAGAAGAAAGCAC 58.994 50.000 0.00 0.00 36.68 4.40
2681 2701 3.557898 CCAGGCTAGAAGAAGAAAGCACA 60.558 47.826 0.00 0.00 36.68 4.57
2682 2702 3.683822 CAGGCTAGAAGAAGAAAGCACAG 59.316 47.826 0.00 0.00 36.68 3.66
2683 2703 3.326297 AGGCTAGAAGAAGAAAGCACAGT 59.674 43.478 0.00 0.00 36.68 3.55
2684 2704 4.068599 GGCTAGAAGAAGAAAGCACAGTT 58.931 43.478 0.00 0.00 36.68 3.16
2685 2705 4.083590 GGCTAGAAGAAGAAAGCACAGTTG 60.084 45.833 0.00 0.00 36.68 3.16
2699 2719 2.644418 GTTGCATCAACGGCAGCA 59.356 55.556 0.00 0.00 43.05 4.41
2700 2720 1.443194 GTTGCATCAACGGCAGCAG 60.443 57.895 0.00 0.00 43.05 4.24
2701 2721 3.271706 TTGCATCAACGGCAGCAGC 62.272 57.895 0.00 0.00 43.05 5.25
2702 2722 3.740397 GCATCAACGGCAGCAGCA 61.740 61.111 2.65 0.00 44.61 4.41
2703 2723 2.483745 CATCAACGGCAGCAGCAG 59.516 61.111 2.65 0.52 44.61 4.24
2704 2724 2.036571 CATCAACGGCAGCAGCAGA 61.037 57.895 8.44 0.00 44.61 4.26
2705 2725 1.302752 ATCAACGGCAGCAGCAGAA 60.303 52.632 8.44 0.00 44.61 3.02
2706 2726 0.679002 ATCAACGGCAGCAGCAGAAT 60.679 50.000 8.44 0.00 44.61 2.40
2707 2727 1.154093 CAACGGCAGCAGCAGAATG 60.154 57.895 8.44 3.09 44.61 2.67
2718 2738 3.506108 CAGAATGCGGCAGGGAAG 58.494 61.111 9.25 0.00 0.00 3.46
2719 2739 1.078214 CAGAATGCGGCAGGGAAGA 60.078 57.895 9.25 0.00 0.00 2.87
2720 2740 1.094073 CAGAATGCGGCAGGGAAGAG 61.094 60.000 9.25 0.00 0.00 2.85
2721 2741 1.821332 GAATGCGGCAGGGAAGAGG 60.821 63.158 9.25 0.00 0.00 3.69
2722 2742 4.496336 ATGCGGCAGGGAAGAGGC 62.496 66.667 9.25 0.00 0.00 4.70
2726 2746 2.044551 GGCAGGGAAGAGGCCAAG 60.045 66.667 5.01 0.00 46.92 3.61
2727 2747 2.044551 GCAGGGAAGAGGCCAAGG 60.045 66.667 5.01 0.00 0.00 3.61
2728 2748 2.606587 GCAGGGAAGAGGCCAAGGA 61.607 63.158 5.01 0.00 0.00 3.36
2729 2749 1.606531 CAGGGAAGAGGCCAAGGAG 59.393 63.158 5.01 0.00 0.00 3.69
2730 2750 1.162085 AGGGAAGAGGCCAAGGAGT 59.838 57.895 5.01 0.00 0.00 3.85
2731 2751 0.912006 AGGGAAGAGGCCAAGGAGTC 60.912 60.000 5.01 0.00 0.00 3.36
2732 2752 1.604915 GGAAGAGGCCAAGGAGTCC 59.395 63.158 5.01 0.00 0.00 3.85
2733 2753 1.219393 GAAGAGGCCAAGGAGTCCG 59.781 63.158 5.01 0.00 0.00 4.79
2734 2754 1.536662 AAGAGGCCAAGGAGTCCGT 60.537 57.895 5.01 0.00 0.00 4.69
2735 2755 1.545706 AAGAGGCCAAGGAGTCCGTC 61.546 60.000 5.01 0.00 0.00 4.79
2736 2756 3.358076 GAGGCCAAGGAGTCCGTCG 62.358 68.421 5.01 0.00 0.00 5.12
2737 2757 4.452733 GGCCAAGGAGTCCGTCGG 62.453 72.222 4.39 4.39 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
874 884 5.922053 AGCAGAAAAGAAGGCTGAAAAATT 58.078 33.333 0.00 0.00 34.83 1.82
949 962 4.342772 GCGCCTCACATTAAATTACACAG 58.657 43.478 0.00 0.00 0.00 3.66
1054 1067 5.335740 CCAGAACTATGACTACGAACACTGT 60.336 44.000 0.00 0.00 0.00 3.55
1162 1175 7.663905 AGTGGTCACTTTAGCAATGTACAAATA 59.336 33.333 0.00 0.00 38.83 1.40
1460 1473 9.781834 CAACTATTACAAAGAAAAGTTGTGACA 57.218 29.630 0.00 0.00 39.50 3.58
1517 1530 9.920946 ACATTACTTCTTACAATGGGTCATTAT 57.079 29.630 0.00 0.00 34.63 1.28
1706 1723 3.272574 ACAGCCATCATCGTCTTCATT 57.727 42.857 0.00 0.00 0.00 2.57
2132 2152 5.657474 ACACTCATATACGTTGGTGGTTAG 58.343 41.667 0.00 0.00 0.00 2.34
2352 2372 5.341617 GGGTGTGTGTGTTTTTATCGAAAA 58.658 37.500 0.00 0.00 34.93 2.29
2353 2373 4.202030 GGGGTGTGTGTGTTTTTATCGAAA 60.202 41.667 0.00 0.00 0.00 3.46
2354 2374 3.315749 GGGGTGTGTGTGTTTTTATCGAA 59.684 43.478 0.00 0.00 0.00 3.71
2355 2375 2.879646 GGGGTGTGTGTGTTTTTATCGA 59.120 45.455 0.00 0.00 0.00 3.59
2356 2376 2.350007 CGGGGTGTGTGTGTTTTTATCG 60.350 50.000 0.00 0.00 0.00 2.92
2357 2377 2.030628 CCGGGGTGTGTGTGTTTTTATC 60.031 50.000 0.00 0.00 0.00 1.75
2358 2378 1.957877 CCGGGGTGTGTGTGTTTTTAT 59.042 47.619 0.00 0.00 0.00 1.40
2359 2379 1.064906 TCCGGGGTGTGTGTGTTTTTA 60.065 47.619 0.00 0.00 0.00 1.52
2360 2380 0.323542 TCCGGGGTGTGTGTGTTTTT 60.324 50.000 0.00 0.00 0.00 1.94
2361 2381 0.323542 TTCCGGGGTGTGTGTGTTTT 60.324 50.000 0.00 0.00 0.00 2.43
2362 2382 0.750182 CTTCCGGGGTGTGTGTGTTT 60.750 55.000 0.00 0.00 0.00 2.83
2363 2383 1.153046 CTTCCGGGGTGTGTGTGTT 60.153 57.895 0.00 0.00 0.00 3.32
2364 2384 2.508928 CTTCCGGGGTGTGTGTGT 59.491 61.111 0.00 0.00 0.00 3.72
2365 2385 2.978010 GCTTCCGGGGTGTGTGTG 60.978 66.667 0.00 0.00 0.00 3.82
2366 2386 4.265056 GGCTTCCGGGGTGTGTGT 62.265 66.667 0.00 0.00 0.00 3.72
2377 2397 1.379642 CCTTCTTCATGGCGGCTTCC 61.380 60.000 11.43 0.00 0.00 3.46
2378 2398 0.678048 ACCTTCTTCATGGCGGCTTC 60.678 55.000 11.43 0.00 0.00 3.86
2379 2399 0.678048 GACCTTCTTCATGGCGGCTT 60.678 55.000 11.43 0.00 0.00 4.35
2380 2400 1.078143 GACCTTCTTCATGGCGGCT 60.078 57.895 11.43 0.00 0.00 5.52
2381 2401 1.372087 CTGACCTTCTTCATGGCGGC 61.372 60.000 0.00 0.00 0.00 6.53
2382 2402 0.745845 CCTGACCTTCTTCATGGCGG 60.746 60.000 0.00 0.00 0.00 6.13
2383 2403 0.036010 ACCTGACCTTCTTCATGGCG 60.036 55.000 0.00 0.00 0.00 5.69
2384 2404 3.350219 TTACCTGACCTTCTTCATGGC 57.650 47.619 0.00 0.00 0.00 4.40
2385 2405 5.989477 TGTATTACCTGACCTTCTTCATGG 58.011 41.667 0.00 0.00 0.00 3.66
2386 2406 7.050377 ACATGTATTACCTGACCTTCTTCATG 58.950 38.462 0.00 0.00 35.45 3.07
2387 2407 7.200434 ACATGTATTACCTGACCTTCTTCAT 57.800 36.000 0.00 0.00 0.00 2.57
2388 2408 6.620877 ACATGTATTACCTGACCTTCTTCA 57.379 37.500 0.00 0.00 0.00 3.02
2389 2409 7.606456 TGAAACATGTATTACCTGACCTTCTTC 59.394 37.037 0.00 0.00 0.00 2.87
2390 2410 7.458397 TGAAACATGTATTACCTGACCTTCTT 58.542 34.615 0.00 0.00 0.00 2.52
2391 2411 7.016153 TGAAACATGTATTACCTGACCTTCT 57.984 36.000 0.00 0.00 0.00 2.85
2392 2412 6.183360 GCTGAAACATGTATTACCTGACCTTC 60.183 42.308 0.00 0.00 0.00 3.46
2393 2413 5.648092 GCTGAAACATGTATTACCTGACCTT 59.352 40.000 0.00 0.00 0.00 3.50
2394 2414 5.186198 GCTGAAACATGTATTACCTGACCT 58.814 41.667 0.00 0.00 0.00 3.85
2395 2415 4.941263 TGCTGAAACATGTATTACCTGACC 59.059 41.667 0.00 0.00 0.00 4.02
2396 2416 5.065218 CCTGCTGAAACATGTATTACCTGAC 59.935 44.000 0.00 0.00 0.00 3.51
2397 2417 5.185454 CCTGCTGAAACATGTATTACCTGA 58.815 41.667 0.00 0.00 0.00 3.86
2398 2418 4.943705 ACCTGCTGAAACATGTATTACCTG 59.056 41.667 0.00 0.00 0.00 4.00
2399 2419 5.179452 ACCTGCTGAAACATGTATTACCT 57.821 39.130 0.00 0.00 0.00 3.08
2400 2420 6.995511 TTACCTGCTGAAACATGTATTACC 57.004 37.500 0.00 0.00 0.00 2.85
2401 2421 7.248437 GGTTTACCTGCTGAAACATGTATTAC 58.752 38.462 0.00 0.00 37.30 1.89
2402 2422 6.092944 CGGTTTACCTGCTGAAACATGTATTA 59.907 38.462 0.00 0.00 37.30 0.98
2403 2423 5.106317 CGGTTTACCTGCTGAAACATGTATT 60.106 40.000 0.00 0.00 37.30 1.89
2404 2424 4.394920 CGGTTTACCTGCTGAAACATGTAT 59.605 41.667 0.00 0.00 37.30 2.29
2405 2425 3.749088 CGGTTTACCTGCTGAAACATGTA 59.251 43.478 0.00 0.00 37.30 2.29
2406 2426 2.552315 CGGTTTACCTGCTGAAACATGT 59.448 45.455 0.00 0.00 37.30 3.21
2407 2427 2.811431 TCGGTTTACCTGCTGAAACATG 59.189 45.455 9.20 0.00 37.30 3.21
2408 2428 3.134574 TCGGTTTACCTGCTGAAACAT 57.865 42.857 9.20 0.00 37.30 2.71
2409 2429 2.623878 TCGGTTTACCTGCTGAAACA 57.376 45.000 9.20 0.00 37.30 2.83
2410 2430 5.813080 ATTATCGGTTTACCTGCTGAAAC 57.187 39.130 0.00 0.00 35.28 2.78
2411 2431 9.048446 GTTATATTATCGGTTTACCTGCTGAAA 57.952 33.333 0.00 0.00 0.00 2.69
2412 2432 7.658575 GGTTATATTATCGGTTTACCTGCTGAA 59.341 37.037 0.00 0.00 0.00 3.02
2413 2433 7.156673 GGTTATATTATCGGTTTACCTGCTGA 58.843 38.462 0.00 0.00 0.00 4.26
2414 2434 6.370718 GGGTTATATTATCGGTTTACCTGCTG 59.629 42.308 0.00 0.00 0.00 4.41
2415 2435 6.043474 TGGGTTATATTATCGGTTTACCTGCT 59.957 38.462 0.00 0.00 0.00 4.24
2416 2436 6.232692 TGGGTTATATTATCGGTTTACCTGC 58.767 40.000 0.00 0.00 0.00 4.85
2417 2437 8.857694 ATTGGGTTATATTATCGGTTTACCTG 57.142 34.615 0.00 0.00 0.00 4.00
2418 2438 8.662255 TGATTGGGTTATATTATCGGTTTACCT 58.338 33.333 0.00 0.00 0.00 3.08
2419 2439 8.851541 TGATTGGGTTATATTATCGGTTTACC 57.148 34.615 0.00 0.00 0.00 2.85
2420 2440 8.448615 GCTGATTGGGTTATATTATCGGTTTAC 58.551 37.037 0.00 0.00 0.00 2.01
2421 2441 8.380099 AGCTGATTGGGTTATATTATCGGTTTA 58.620 33.333 0.00 0.00 0.00 2.01
2422 2442 7.231467 AGCTGATTGGGTTATATTATCGGTTT 58.769 34.615 0.00 0.00 0.00 3.27
2423 2443 6.779860 AGCTGATTGGGTTATATTATCGGTT 58.220 36.000 0.00 0.00 0.00 4.44
2424 2444 6.374417 AGCTGATTGGGTTATATTATCGGT 57.626 37.500 0.00 0.00 0.00 4.69
2425 2445 7.556844 AGTAGCTGATTGGGTTATATTATCGG 58.443 38.462 0.00 0.00 0.00 4.18
2426 2446 9.517609 GTAGTAGCTGATTGGGTTATATTATCG 57.482 37.037 0.00 0.00 0.00 2.92
2430 2450 8.660435 ACATGTAGTAGCTGATTGGGTTATATT 58.340 33.333 0.00 0.00 0.00 1.28
2431 2451 8.207350 ACATGTAGTAGCTGATTGGGTTATAT 57.793 34.615 0.00 0.00 0.00 0.86
2432 2452 7.612065 ACATGTAGTAGCTGATTGGGTTATA 57.388 36.000 0.00 0.00 0.00 0.98
2433 2453 6.500589 ACATGTAGTAGCTGATTGGGTTAT 57.499 37.500 0.00 0.00 0.00 1.89
2434 2454 5.950544 ACATGTAGTAGCTGATTGGGTTA 57.049 39.130 0.00 0.00 0.00 2.85
2435 2455 4.844349 ACATGTAGTAGCTGATTGGGTT 57.156 40.909 0.00 0.00 0.00 4.11
2436 2456 4.844349 AACATGTAGTAGCTGATTGGGT 57.156 40.909 0.00 0.00 0.00 4.51
2437 2457 4.576463 GGAAACATGTAGTAGCTGATTGGG 59.424 45.833 0.00 0.00 0.00 4.12
2438 2458 4.271049 CGGAAACATGTAGTAGCTGATTGG 59.729 45.833 0.00 0.00 0.00 3.16
2439 2459 4.260375 GCGGAAACATGTAGTAGCTGATTG 60.260 45.833 0.00 0.00 0.00 2.67
2440 2460 3.871594 GCGGAAACATGTAGTAGCTGATT 59.128 43.478 0.00 0.00 0.00 2.57
2441 2461 3.118775 TGCGGAAACATGTAGTAGCTGAT 60.119 43.478 0.00 0.00 0.00 2.90
2442 2462 2.232696 TGCGGAAACATGTAGTAGCTGA 59.767 45.455 0.00 0.00 0.00 4.26
2443 2463 2.604914 CTGCGGAAACATGTAGTAGCTG 59.395 50.000 0.00 3.94 0.00 4.24
2444 2464 2.418746 CCTGCGGAAACATGTAGTAGCT 60.419 50.000 0.00 0.00 0.00 3.32
2445 2465 1.933853 CCTGCGGAAACATGTAGTAGC 59.066 52.381 0.00 4.02 0.00 3.58
2446 2466 3.247006 ACCTGCGGAAACATGTAGTAG 57.753 47.619 0.00 0.39 0.00 2.57
2447 2467 3.765511 AGTACCTGCGGAAACATGTAGTA 59.234 43.478 0.00 0.00 0.00 1.82
2448 2468 2.565834 AGTACCTGCGGAAACATGTAGT 59.434 45.455 0.00 0.00 0.00 2.73
2449 2469 3.187700 GAGTACCTGCGGAAACATGTAG 58.812 50.000 0.00 0.00 0.00 2.74
2450 2470 2.563620 TGAGTACCTGCGGAAACATGTA 59.436 45.455 0.00 0.00 0.00 2.29
2451 2471 1.346395 TGAGTACCTGCGGAAACATGT 59.654 47.619 0.00 0.00 0.00 3.21
2452 2472 1.732259 GTGAGTACCTGCGGAAACATG 59.268 52.381 0.00 0.00 0.00 3.21
2453 2473 1.338769 GGTGAGTACCTGCGGAAACAT 60.339 52.381 0.00 0.00 43.97 2.71
2454 2474 0.034337 GGTGAGTACCTGCGGAAACA 59.966 55.000 0.00 0.00 43.97 2.83
2455 2475 2.836944 GGTGAGTACCTGCGGAAAC 58.163 57.895 0.00 0.00 43.97 2.78
2475 2495 2.817258 ACGATTGTGGTAACCATGTTGG 59.183 45.455 0.00 0.00 45.02 3.77
2476 2496 4.023622 TGAACGATTGTGGTAACCATGTTG 60.024 41.667 0.00 0.00 35.28 3.33
2477 2497 4.138290 TGAACGATTGTGGTAACCATGTT 58.862 39.130 0.00 0.00 35.28 2.71
2478 2498 3.745799 TGAACGATTGTGGTAACCATGT 58.254 40.909 0.00 0.00 35.28 3.21
2479 2499 4.963276 ATGAACGATTGTGGTAACCATG 57.037 40.909 0.00 0.00 35.28 3.66
2480 2500 6.353323 TCATATGAACGATTGTGGTAACCAT 58.647 36.000 1.98 0.00 35.28 3.55
2481 2501 5.735766 TCATATGAACGATTGTGGTAACCA 58.264 37.500 1.98 0.00 0.00 3.67
2482 2502 6.706270 AGATCATATGAACGATTGTGGTAACC 59.294 38.462 9.99 0.00 0.00 2.85
2483 2503 7.715265 AGATCATATGAACGATTGTGGTAAC 57.285 36.000 9.99 0.00 0.00 2.50
2484 2504 8.731275 AAAGATCATATGAACGATTGTGGTAA 57.269 30.769 9.99 0.00 0.00 2.85
2485 2505 8.611757 CAAAAGATCATATGAACGATTGTGGTA 58.388 33.333 9.99 0.00 0.00 3.25
2486 2506 7.336679 TCAAAAGATCATATGAACGATTGTGGT 59.663 33.333 21.55 2.13 0.00 4.16
2487 2507 7.641411 GTCAAAAGATCATATGAACGATTGTGG 59.359 37.037 21.55 10.89 0.00 4.17
2488 2508 7.371615 CGTCAAAAGATCATATGAACGATTGTG 59.628 37.037 21.55 14.61 0.00 3.33
2489 2509 7.277760 TCGTCAAAAGATCATATGAACGATTGT 59.722 33.333 17.95 0.00 0.00 2.71
2490 2510 7.621102 TCGTCAAAAGATCATATGAACGATTG 58.379 34.615 17.95 18.45 0.00 2.67
2491 2511 7.770801 TCGTCAAAAGATCATATGAACGATT 57.229 32.000 17.95 10.42 0.00 3.34
2492 2512 7.869937 AGATCGTCAAAAGATCATATGAACGAT 59.130 33.333 27.02 27.02 45.05 3.73
2493 2513 7.203218 AGATCGTCAAAAGATCATATGAACGA 58.797 34.615 21.93 21.93 45.05 3.85
2494 2514 7.380870 AGAGATCGTCAAAAGATCATATGAACG 59.619 37.037 9.99 12.85 45.05 3.95
2495 2515 8.586570 AGAGATCGTCAAAAGATCATATGAAC 57.413 34.615 9.99 7.23 45.05 3.18
2496 2516 9.684448 GTAGAGATCGTCAAAAGATCATATGAA 57.316 33.333 9.99 0.00 45.05 2.57
2497 2517 9.072375 AGTAGAGATCGTCAAAAGATCATATGA 57.928 33.333 8.10 8.10 45.05 2.15
2498 2518 9.127006 CAGTAGAGATCGTCAAAAGATCATATG 57.873 37.037 8.62 0.00 45.05 1.78
2499 2519 8.855110 ACAGTAGAGATCGTCAAAAGATCATAT 58.145 33.333 8.62 0.00 45.05 1.78
2500 2520 8.131731 CACAGTAGAGATCGTCAAAAGATCATA 58.868 37.037 8.62 0.00 45.05 2.15
2501 2521 6.977502 CACAGTAGAGATCGTCAAAAGATCAT 59.022 38.462 8.62 0.53 45.05 2.45
2502 2522 6.071896 ACACAGTAGAGATCGTCAAAAGATCA 60.072 38.462 8.62 0.00 45.05 2.92
2503 2523 6.326375 ACACAGTAGAGATCGTCAAAAGATC 58.674 40.000 0.00 0.00 43.48 2.75
2504 2524 6.274157 ACACAGTAGAGATCGTCAAAAGAT 57.726 37.500 0.00 0.00 0.00 2.40
2505 2525 5.707242 ACACAGTAGAGATCGTCAAAAGA 57.293 39.130 0.00 0.00 0.00 2.52
2506 2526 5.508573 CGTACACAGTAGAGATCGTCAAAAG 59.491 44.000 0.00 0.00 0.00 2.27
2507 2527 5.049198 ACGTACACAGTAGAGATCGTCAAAA 60.049 40.000 0.00 0.00 0.00 2.44
2508 2528 4.453478 ACGTACACAGTAGAGATCGTCAAA 59.547 41.667 0.00 0.00 0.00 2.69
2509 2529 3.999001 ACGTACACAGTAGAGATCGTCAA 59.001 43.478 0.00 0.00 0.00 3.18
2510 2530 3.593096 ACGTACACAGTAGAGATCGTCA 58.407 45.455 0.00 0.00 0.00 4.35
2511 2531 4.142945 ACAACGTACACAGTAGAGATCGTC 60.143 45.833 0.00 0.00 0.00 4.20
2512 2532 3.750130 ACAACGTACACAGTAGAGATCGT 59.250 43.478 0.00 0.00 0.00 3.73
2513 2533 4.337985 ACAACGTACACAGTAGAGATCG 57.662 45.455 0.00 0.00 0.00 3.69
2514 2534 8.140677 AGTATACAACGTACACAGTAGAGATC 57.859 38.462 5.50 0.00 0.00 2.75
2515 2535 7.226325 GGAGTATACAACGTACACAGTAGAGAT 59.774 40.741 5.50 0.00 0.00 2.75
2516 2536 6.536582 GGAGTATACAACGTACACAGTAGAGA 59.463 42.308 5.50 0.00 0.00 3.10
2517 2537 6.538021 AGGAGTATACAACGTACACAGTAGAG 59.462 42.308 5.50 0.00 0.00 2.43
2518 2538 6.409704 AGGAGTATACAACGTACACAGTAGA 58.590 40.000 5.50 0.00 0.00 2.59
2519 2539 6.674694 AGGAGTATACAACGTACACAGTAG 57.325 41.667 5.50 0.00 0.00 2.57
2520 2540 8.737168 ATTAGGAGTATACAACGTACACAGTA 57.263 34.615 5.50 0.00 0.00 2.74
2521 2541 7.636150 ATTAGGAGTATACAACGTACACAGT 57.364 36.000 5.50 0.00 0.00 3.55
2528 2548 8.800332 CAGGGTATAATTAGGAGTATACAACGT 58.200 37.037 5.50 3.45 39.73 3.99
2529 2549 8.248945 CCAGGGTATAATTAGGAGTATACAACG 58.751 40.741 5.50 0.00 39.73 4.10
2530 2550 9.097946 ACCAGGGTATAATTAGGAGTATACAAC 57.902 37.037 5.50 0.00 39.73 3.32
2532 2552 9.759473 GTACCAGGGTATAATTAGGAGTATACA 57.241 37.037 5.50 0.00 39.73 2.29
2533 2553 8.897752 CGTACCAGGGTATAATTAGGAGTATAC 58.102 40.741 0.81 0.00 38.14 1.47
2534 2554 7.557719 GCGTACCAGGGTATAATTAGGAGTATA 59.442 40.741 0.81 0.00 32.82 1.47
2535 2555 6.379417 GCGTACCAGGGTATAATTAGGAGTAT 59.621 42.308 0.81 0.00 32.82 2.12
2536 2556 5.711976 GCGTACCAGGGTATAATTAGGAGTA 59.288 44.000 0.81 0.00 32.82 2.59
2537 2557 4.525874 GCGTACCAGGGTATAATTAGGAGT 59.474 45.833 0.81 0.00 32.82 3.85
2538 2558 4.081807 GGCGTACCAGGGTATAATTAGGAG 60.082 50.000 0.81 0.00 35.26 3.69
2539 2559 3.834231 GGCGTACCAGGGTATAATTAGGA 59.166 47.826 0.81 0.00 35.26 2.94
2540 2560 3.367703 CGGCGTACCAGGGTATAATTAGG 60.368 52.174 0.00 0.00 34.57 2.69
2541 2561 3.507233 TCGGCGTACCAGGGTATAATTAG 59.493 47.826 6.85 0.00 34.57 1.73
2542 2562 3.495331 TCGGCGTACCAGGGTATAATTA 58.505 45.455 6.85 0.00 34.57 1.40
2543 2563 2.318908 TCGGCGTACCAGGGTATAATT 58.681 47.619 6.85 0.00 34.57 1.40
2544 2564 1.999648 TCGGCGTACCAGGGTATAAT 58.000 50.000 6.85 0.00 34.57 1.28
2545 2565 1.408702 GTTCGGCGTACCAGGGTATAA 59.591 52.381 6.85 0.00 34.57 0.98
2546 2566 1.032014 GTTCGGCGTACCAGGGTATA 58.968 55.000 6.85 0.00 34.57 1.47
2547 2567 1.818555 GTTCGGCGTACCAGGGTAT 59.181 57.895 6.85 0.00 34.57 2.73
2548 2568 2.699768 CGTTCGGCGTACCAGGGTA 61.700 63.158 11.08 0.00 34.57 3.69
2549 2569 4.060038 CGTTCGGCGTACCAGGGT 62.060 66.667 11.08 0.00 34.57 4.34
2585 2605 1.133450 TGACTAGCTAGGCCACTAGGG 60.133 57.143 24.08 8.18 45.55 3.53
2586 2606 1.957877 GTGACTAGCTAGGCCACTAGG 59.042 57.143 27.35 11.38 45.55 3.02
2587 2607 2.423660 AGGTGACTAGCTAGGCCACTAG 60.424 54.545 30.35 20.15 44.20 2.57
2588 2608 1.569548 AGGTGACTAGCTAGGCCACTA 59.430 52.381 30.35 12.67 40.61 2.74
2589 2609 0.336737 AGGTGACTAGCTAGGCCACT 59.663 55.000 30.35 23.25 40.61 4.00
2590 2610 0.747852 GAGGTGACTAGCTAGGCCAC 59.252 60.000 27.00 27.00 44.43 5.01
2591 2611 0.752009 CGAGGTGACTAGCTAGGCCA 60.752 60.000 24.08 17.47 44.43 5.36
2592 2612 0.465824 TCGAGGTGACTAGCTAGGCC 60.466 60.000 24.08 20.51 44.43 5.19
2593 2613 1.538075 GATCGAGGTGACTAGCTAGGC 59.462 57.143 24.35 22.54 44.43 3.93
2594 2614 2.811431 CTGATCGAGGTGACTAGCTAGG 59.189 54.545 24.35 7.13 44.43 3.02
2595 2615 3.734463 TCTGATCGAGGTGACTAGCTAG 58.266 50.000 19.44 19.44 44.43 3.42
2596 2616 3.840124 TCTGATCGAGGTGACTAGCTA 57.160 47.619 0.00 0.00 44.43 3.32
2597 2617 2.719531 TCTGATCGAGGTGACTAGCT 57.280 50.000 0.00 0.00 44.43 3.32
2598 2618 2.227865 GGATCTGATCGAGGTGACTAGC 59.772 54.545 11.28 0.00 44.43 3.42
2599 2619 3.750371 AGGATCTGATCGAGGTGACTAG 58.250 50.000 11.28 0.00 44.43 2.57
2600 2620 3.745799 GAGGATCTGATCGAGGTGACTA 58.254 50.000 11.28 0.00 44.43 2.59
2615 2635 2.876892 GCTACTCCCCGTAGAGAGGATC 60.877 59.091 5.99 0.00 46.98 3.36
2616 2636 1.074244 GCTACTCCCCGTAGAGAGGAT 59.926 57.143 5.99 0.00 46.98 3.24
2617 2637 0.473326 GCTACTCCCCGTAGAGAGGA 59.527 60.000 5.99 0.00 46.98 3.71
2618 2638 0.885596 CGCTACTCCCCGTAGAGAGG 60.886 65.000 5.99 0.41 46.98 3.69
2619 2639 1.508808 GCGCTACTCCCCGTAGAGAG 61.509 65.000 0.00 0.00 46.98 3.20
2620 2640 1.525535 GCGCTACTCCCCGTAGAGA 60.526 63.158 0.00 0.00 46.98 3.10
2621 2641 1.102222 AAGCGCTACTCCCCGTAGAG 61.102 60.000 12.05 1.42 46.98 2.43
2622 2642 1.077212 AAGCGCTACTCCCCGTAGA 60.077 57.895 12.05 0.00 46.98 2.59
2623 2643 1.359475 GAAGCGCTACTCCCCGTAG 59.641 63.158 12.05 0.00 46.78 3.51
2624 2644 2.123428 GGAAGCGCTACTCCCCGTA 61.123 63.158 12.05 0.00 0.00 4.02
2625 2645 3.459063 GGAAGCGCTACTCCCCGT 61.459 66.667 12.05 0.00 0.00 5.28
2626 2646 3.432051 CTGGAAGCGCTACTCCCCG 62.432 68.421 22.41 11.66 0.00 5.73
2627 2647 2.501610 CTGGAAGCGCTACTCCCC 59.498 66.667 22.41 13.84 0.00 4.81
2628 2648 2.501610 CCTGGAAGCGCTACTCCC 59.498 66.667 22.41 16.04 0.00 4.30
2629 2649 2.058595 TCCCTGGAAGCGCTACTCC 61.059 63.158 19.35 19.35 0.00 3.85
2630 2650 1.142097 GTCCCTGGAAGCGCTACTC 59.858 63.158 12.05 5.19 0.00 2.59
2631 2651 2.359967 GGTCCCTGGAAGCGCTACT 61.360 63.158 12.05 0.00 0.00 2.57
2632 2652 1.972660 ATGGTCCCTGGAAGCGCTAC 61.973 60.000 12.05 7.87 0.00 3.58
2633 2653 1.689233 ATGGTCCCTGGAAGCGCTA 60.689 57.895 12.05 0.00 0.00 4.26
2634 2654 3.011517 ATGGTCCCTGGAAGCGCT 61.012 61.111 2.64 2.64 0.00 5.92
2635 2655 2.825836 CATGGTCCCTGGAAGCGC 60.826 66.667 0.00 0.00 0.00 5.92
2636 2656 2.124570 CCATGGTCCCTGGAAGCG 60.125 66.667 7.40 0.00 35.70 4.68
2637 2657 1.379044 CACCATGGTCCCTGGAAGC 60.379 63.158 16.53 0.00 37.22 3.86
2638 2658 0.254178 CTCACCATGGTCCCTGGAAG 59.746 60.000 16.53 11.78 37.22 3.46
2639 2659 0.475632 ACTCACCATGGTCCCTGGAA 60.476 55.000 16.53 6.54 37.22 3.53
2640 2660 0.909610 GACTCACCATGGTCCCTGGA 60.910 60.000 16.53 8.12 37.22 3.86
2641 2661 1.604378 GACTCACCATGGTCCCTGG 59.396 63.158 16.53 11.45 39.80 4.45
2642 2662 1.604378 GGACTCACCATGGTCCCTG 59.396 63.158 16.53 3.72 44.35 4.45
2643 2663 4.153957 GGACTCACCATGGTCCCT 57.846 61.111 16.53 0.00 44.35 4.20
2652 2672 1.853963 TCTTCTAGCCTGGACTCACC 58.146 55.000 0.00 0.00 39.54 4.02
2653 2673 3.093057 TCTTCTTCTAGCCTGGACTCAC 58.907 50.000 0.00 0.00 0.00 3.51
2654 2674 3.458044 TCTTCTTCTAGCCTGGACTCA 57.542 47.619 0.00 0.00 0.00 3.41
2655 2675 4.754322 CTTTCTTCTTCTAGCCTGGACTC 58.246 47.826 0.00 0.00 0.00 3.36
2656 2676 3.055458 GCTTTCTTCTTCTAGCCTGGACT 60.055 47.826 0.00 0.00 0.00 3.85
2657 2677 3.266636 GCTTTCTTCTTCTAGCCTGGAC 58.733 50.000 0.00 0.00 0.00 4.02
2658 2678 2.906389 TGCTTTCTTCTTCTAGCCTGGA 59.094 45.455 0.00 0.00 32.73 3.86
2659 2679 3.006247 GTGCTTTCTTCTTCTAGCCTGG 58.994 50.000 0.00 0.00 32.73 4.45
2660 2680 3.668447 TGTGCTTTCTTCTTCTAGCCTG 58.332 45.455 0.00 0.00 32.73 4.85
2661 2681 3.326297 ACTGTGCTTTCTTCTTCTAGCCT 59.674 43.478 0.00 0.00 32.73 4.58
2662 2682 3.669536 ACTGTGCTTTCTTCTTCTAGCC 58.330 45.455 0.00 0.00 32.73 3.93
2663 2683 5.028428 CAACTGTGCTTTCTTCTTCTAGC 57.972 43.478 0.00 0.00 0.00 3.42
2678 2698 0.386352 CTGCCGTTGATGCAACTGTG 60.386 55.000 8.46 0.00 41.62 3.66
2679 2699 1.951510 CTGCCGTTGATGCAACTGT 59.048 52.632 8.46 0.00 41.62 3.55
2680 2700 1.443194 GCTGCCGTTGATGCAACTG 60.443 57.895 8.46 3.49 41.62 3.16
2681 2701 1.859427 CTGCTGCCGTTGATGCAACT 61.859 55.000 8.46 0.00 41.62 3.16
2682 2702 1.443194 CTGCTGCCGTTGATGCAAC 60.443 57.895 0.00 0.00 40.54 4.17
2683 2703 2.956194 CTGCTGCCGTTGATGCAA 59.044 55.556 0.00 0.00 38.46 4.08
2684 2704 3.740397 GCTGCTGCCGTTGATGCA 61.740 61.111 3.85 0.00 37.17 3.96
2685 2705 3.678717 CTGCTGCTGCCGTTGATGC 62.679 63.158 13.47 0.00 38.71 3.91
2686 2706 1.579964 TTCTGCTGCTGCCGTTGATG 61.580 55.000 13.47 0.00 38.71 3.07
2687 2707 0.679002 ATTCTGCTGCTGCCGTTGAT 60.679 50.000 13.47 1.15 38.71 2.57
2688 2708 1.302752 ATTCTGCTGCTGCCGTTGA 60.303 52.632 13.47 3.65 38.71 3.18
2689 2709 1.154093 CATTCTGCTGCTGCCGTTG 60.154 57.895 13.47 5.85 38.71 4.10
2690 2710 2.986306 GCATTCTGCTGCTGCCGTT 61.986 57.895 13.47 0.00 40.96 4.44
2691 2711 3.437795 GCATTCTGCTGCTGCCGT 61.438 61.111 13.47 0.00 40.96 5.68
2692 2712 4.531912 CGCATTCTGCTGCTGCCG 62.532 66.667 13.47 6.90 42.25 5.69
2693 2713 4.189188 CCGCATTCTGCTGCTGCC 62.189 66.667 13.47 0.00 42.25 4.85
2698 2718 3.515286 CCCTGCCGCATTCTGCTG 61.515 66.667 0.00 0.00 42.25 4.41
2699 2719 3.272364 TTCCCTGCCGCATTCTGCT 62.272 57.895 0.00 0.00 42.25 4.24
2700 2720 2.751436 TTCCCTGCCGCATTCTGC 60.751 61.111 0.00 0.00 40.69 4.26
2701 2721 1.078214 TCTTCCCTGCCGCATTCTG 60.078 57.895 0.00 0.00 0.00 3.02
2702 2722 1.222936 CTCTTCCCTGCCGCATTCT 59.777 57.895 0.00 0.00 0.00 2.40
2703 2723 1.821332 CCTCTTCCCTGCCGCATTC 60.821 63.158 0.00 0.00 0.00 2.67
2704 2724 2.273449 CCTCTTCCCTGCCGCATT 59.727 61.111 0.00 0.00 0.00 3.56
2705 2725 4.496336 GCCTCTTCCCTGCCGCAT 62.496 66.667 0.00 0.00 0.00 4.73
2709 2729 2.044551 CTTGGCCTCTTCCCTGCC 60.045 66.667 3.32 0.00 45.56 4.85
2710 2730 2.044551 CCTTGGCCTCTTCCCTGC 60.045 66.667 3.32 0.00 0.00 4.85
2711 2731 1.204113 ACTCCTTGGCCTCTTCCCTG 61.204 60.000 3.32 0.00 0.00 4.45
2712 2732 0.912006 GACTCCTTGGCCTCTTCCCT 60.912 60.000 3.32 0.00 0.00 4.20
2713 2733 1.604915 GACTCCTTGGCCTCTTCCC 59.395 63.158 3.32 0.00 0.00 3.97
2714 2734 1.604915 GGACTCCTTGGCCTCTTCC 59.395 63.158 3.32 0.00 41.93 3.46
2715 2735 1.219393 CGGACTCCTTGGCCTCTTC 59.781 63.158 3.32 0.00 43.44 2.87
2716 2736 1.536662 ACGGACTCCTTGGCCTCTT 60.537 57.895 3.32 0.00 43.44 2.85
2717 2737 1.985116 GACGGACTCCTTGGCCTCT 60.985 63.158 3.32 0.00 43.44 3.69
2718 2738 2.579738 GACGGACTCCTTGGCCTC 59.420 66.667 3.32 0.00 43.44 4.70
2719 2739 3.382832 CGACGGACTCCTTGGCCT 61.383 66.667 3.32 0.00 43.44 5.19
2720 2740 4.452733 CCGACGGACTCCTTGGCC 62.453 72.222 8.64 0.00 41.70 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.