Multiple sequence alignment - TraesCS3D01G354200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G354200 chr3D 100.000 4181 0 0 1 4181 464811505 464807325 0.000000e+00 7721
1 TraesCS3D01G354200 chr3D 100.000 532 0 0 4406 4937 464807100 464806569 0.000000e+00 983
2 TraesCS3D01G354200 chr3D 81.445 1218 180 34 2545 3751 465027156 465025974 0.000000e+00 955
3 TraesCS3D01G354200 chr3D 90.040 251 22 3 1531 1781 465027713 465027466 6.170000e-84 322
4 TraesCS3D01G354200 chr3A 91.681 2320 125 39 1863 4142 608196460 608194169 0.000000e+00 3153
5 TraesCS3D01G354200 chr3A 92.385 1589 56 15 258 1829 608198000 608196460 0.000000e+00 2204
6 TraesCS3D01G354200 chr3A 92.887 239 14 2 22 257 608198265 608198027 1.320000e-90 344
7 TraesCS3D01G354200 chr3A 89.243 251 24 3 1531 1781 608347931 608347684 1.330000e-80 311
8 TraesCS3D01G354200 chr3B 94.748 1904 81 11 2137 4034 618156165 618154275 0.000000e+00 2944
9 TraesCS3D01G354200 chr3B 90.615 2099 94 36 4 2051 618158341 618156295 0.000000e+00 2689
10 TraesCS3D01G354200 chr3B 88.048 251 27 1 1531 1781 618442741 618442494 1.340000e-75 294
11 TraesCS3D01G354200 chr3B 90.411 146 12 2 4792 4937 15074009 15073866 1.810000e-44 191
12 TraesCS3D01G354200 chr7D 84.889 1211 157 12 2548 3753 149085145 149083956 0.000000e+00 1199
13 TraesCS3D01G354200 chr7D 84.749 1213 156 19 2546 3753 149181890 149183078 0.000000e+00 1188
14 TraesCS3D01G354200 chr7D 89.600 250 23 3 1531 1780 149181430 149181676 1.030000e-81 315
15 TraesCS3D01G354200 chr7D 88.843 242 27 0 1531 1772 149085623 149085382 1.040000e-76 298
16 TraesCS3D01G354200 chr7D 86.335 161 22 0 1234 1394 149181275 149181435 5.080000e-40 176
17 TraesCS3D01G354200 chr7D 91.667 84 6 1 1962 2045 149085324 149085242 1.120000e-21 115
18 TraesCS3D01G354200 chr7A 87.992 991 115 2 2542 3528 150022493 150023483 0.000000e+00 1168
19 TraesCS3D01G354200 chr7A 84.341 1207 165 12 2549 3753 149862101 149860917 0.000000e+00 1160
20 TraesCS3D01G354200 chr7A 85.965 228 25 6 4696 4920 652607081 652606858 2.300000e-58 237
21 TraesCS3D01G354200 chr7A 88.750 80 9 0 1962 2041 150022325 150022404 1.130000e-16 99
22 TraesCS3D01G354200 chr7B 87.792 983 117 1 2549 3528 111943059 111944041 0.000000e+00 1147
23 TraesCS3D01G354200 chr7B 90.870 230 21 0 1531 1760 111942603 111942832 4.800000e-80 309
24 TraesCS3D01G354200 chr7B 86.420 162 22 0 1233 1394 111942447 111942608 1.410000e-40 178
25 TraesCS3D01G354200 chr7B 92.500 80 6 0 1962 2041 111942902 111942981 1.120000e-21 115
26 TraesCS3D01G354200 chr2D 81.363 1218 192 23 2547 3753 165484726 165483533 0.000000e+00 959
27 TraesCS3D01G354200 chr2D 89.224 232 25 0 1531 1762 165485211 165484980 1.740000e-74 291
28 TraesCS3D01G354200 chr2D 92.199 141 9 2 4793 4933 556230774 556230912 1.080000e-46 198
29 TraesCS3D01G354200 chr2D 87.037 162 21 0 1233 1394 165485367 165485206 3.040000e-42 183
30 TraesCS3D01G354200 chr2D 88.356 146 17 0 1233 1378 165333627 165333772 5.080000e-40 176
31 TraesCS3D01G354200 chr2A 80.741 1215 208 20 2547 3753 185364109 185362913 0.000000e+00 924
32 TraesCS3D01G354200 chr2A 86.420 162 22 0 1233 1394 185264916 185265077 1.410000e-40 178
33 TraesCS3D01G354200 chr4D 83.747 363 35 22 4592 4937 63591996 63591641 6.170000e-84 322
34 TraesCS3D01G354200 chr5A 85.948 306 32 10 4638 4937 10322103 10321803 2.870000e-82 316
35 TraesCS3D01G354200 chr5A 91.034 145 12 1 4793 4937 495994226 495994083 1.400000e-45 195
36 TraesCS3D01G354200 chr1D 82.333 300 27 12 4629 4927 2386410 2386136 2.300000e-58 237
37 TraesCS3D01G354200 chr1D 81.395 258 31 15 4689 4937 395500321 395500570 1.400000e-45 195
38 TraesCS3D01G354200 chr5B 87.719 171 18 3 1233 1402 679311136 679311304 3.900000e-46 196
39 TraesCS3D01G354200 chr5D 78.614 332 44 22 4629 4937 10789999 10789672 1.400000e-45 195
40 TraesCS3D01G354200 chr5D 86.471 170 22 1 1233 1402 538255177 538255345 8.440000e-43 185
41 TraesCS3D01G354200 chr2B 79.032 310 37 21 4633 4937 110603273 110603559 2.350000e-43 187
42 TraesCS3D01G354200 chr1B 84.211 133 21 0 3621 3753 510810469 510810601 4.010000e-26 130
43 TraesCS3D01G354200 chr1A 83.459 133 22 0 3621 3753 481675600 481675732 1.870000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G354200 chr3D 464806569 464811505 4936 True 4352.000000 7721 100.000000 1 4937 2 chr3D.!!$R1 4936
1 TraesCS3D01G354200 chr3D 465025974 465027713 1739 True 638.500000 955 85.742500 1531 3751 2 chr3D.!!$R2 2220
2 TraesCS3D01G354200 chr3A 608194169 608198265 4096 True 1900.333333 3153 92.317667 22 4142 3 chr3A.!!$R2 4120
3 TraesCS3D01G354200 chr3B 618154275 618158341 4066 True 2816.500000 2944 92.681500 4 4034 2 chr3B.!!$R3 4030
4 TraesCS3D01G354200 chr7D 149181275 149183078 1803 False 559.666667 1188 86.894667 1234 3753 3 chr7D.!!$F1 2519
5 TraesCS3D01G354200 chr7D 149083956 149085623 1667 True 537.333333 1199 88.466333 1531 3753 3 chr7D.!!$R1 2222
6 TraesCS3D01G354200 chr7A 149860917 149862101 1184 True 1160.000000 1160 84.341000 2549 3753 1 chr7A.!!$R1 1204
7 TraesCS3D01G354200 chr7A 150022325 150023483 1158 False 633.500000 1168 88.371000 1962 3528 2 chr7A.!!$F1 1566
8 TraesCS3D01G354200 chr7B 111942447 111944041 1594 False 437.250000 1147 89.395500 1233 3528 4 chr7B.!!$F1 2295
9 TraesCS3D01G354200 chr2D 165483533 165485367 1834 True 477.666667 959 85.874667 1233 3753 3 chr2D.!!$R1 2520
10 TraesCS3D01G354200 chr2A 185362913 185364109 1196 True 924.000000 924 80.741000 2547 3753 1 chr2A.!!$R1 1206

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
391 421 0.599204 TTGTCAGCCGTCGTTCTTCC 60.599 55.0 0.0 0.0 0.00 3.46 F
2080 2233 0.106167 AGAGCTGGTATAGGCCGACA 60.106 55.0 0.0 0.0 0.00 4.35 F
2205 2358 0.320697 ACAAGTACGCCAGGAGGTTC 59.679 55.0 0.0 0.0 37.19 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2134 2287 0.171903 ATGCATCGGAAGCACAAAGC 59.828 50.0 10.38 0.00 45.95 3.51 R
3608 3776 0.472044 ACACCTGCACCACATACACA 59.528 50.0 0.00 0.00 0.00 3.72 R
4112 4292 0.322008 ACTAGGCACAGCTTTCCTGC 60.322 55.0 8.11 1.95 45.78 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 6.630676 TGAATTCTTTGCGCAAATTATCAC 57.369 33.333 33.64 23.06 0.00 3.06
119 120 5.476945 GGAGTGAAACCTAATCAATTGTGGT 59.523 40.000 5.13 7.26 37.80 4.16
177 179 2.355108 GCTGATCTTGGCAACTGGTCTA 60.355 50.000 0.00 0.00 37.61 2.59
183 185 2.768253 TGGCAACTGGTCTATCAGTG 57.232 50.000 0.00 0.00 46.17 3.66
186 188 2.234908 GGCAACTGGTCTATCAGTGTCT 59.765 50.000 0.00 0.00 46.17 3.41
189 191 4.742417 CAACTGGTCTATCAGTGTCTCAG 58.258 47.826 0.00 0.00 46.17 3.35
218 220 2.681319 TGCCCCATAATGCTAATGCT 57.319 45.000 0.00 0.00 40.48 3.79
374 404 3.181487 GGTGTCCGGATGATTTGGATTTG 60.181 47.826 7.81 0.00 33.63 2.32
391 421 0.599204 TTGTCAGCCGTCGTTCTTCC 60.599 55.000 0.00 0.00 0.00 3.46
392 422 1.737008 GTCAGCCGTCGTTCTTCCC 60.737 63.158 0.00 0.00 0.00 3.97
393 423 1.906824 TCAGCCGTCGTTCTTCCCT 60.907 57.895 0.00 0.00 0.00 4.20
394 424 1.446272 CAGCCGTCGTTCTTCCCTC 60.446 63.158 0.00 0.00 0.00 4.30
494 528 5.485209 TTACCTCTCACTTCTCCCTTTTC 57.515 43.478 0.00 0.00 0.00 2.29
566 600 2.032799 TGCAAATCAAACCACTGTCGAC 59.967 45.455 9.11 9.11 0.00 4.20
625 659 5.015515 TGGTCAAAAACAGATGGATATGCA 58.984 37.500 0.00 0.00 0.00 3.96
639 673 3.538591 GATATGCATGCATGGCTAGCTA 58.461 45.455 37.43 19.14 37.82 3.32
998 1042 3.507290 GCTCAAAGCTAGCCTGGC 58.493 61.111 11.65 11.65 38.45 4.85
999 1043 1.077858 GCTCAAAGCTAGCCTGGCT 60.078 57.895 26.52 26.52 43.41 4.75
1035 1079 2.850439 CATGGCCATGGCTATCTCG 58.150 57.895 34.31 19.21 40.34 4.04
1146 1196 1.404391 CGTCCACGTCCAATAGCTAGT 59.596 52.381 0.00 0.00 34.11 2.57
1147 1197 2.794981 CGTCCACGTCCAATAGCTAGTG 60.795 54.545 14.19 14.19 34.11 2.74
1148 1198 1.136305 TCCACGTCCAATAGCTAGTGC 59.864 52.381 15.64 2.38 40.05 4.40
1149 1199 1.134818 CCACGTCCAATAGCTAGTGCA 60.135 52.381 15.64 0.00 42.74 4.57
1153 1203 2.804572 CGTCCAATAGCTAGTGCATGCT 60.805 50.000 20.33 14.45 42.74 3.79
1431 1486 1.751351 CCCTGGCTTTAAGCTTTAGGC 59.249 52.381 16.89 20.92 41.99 3.93
1516 1571 3.228085 TTTTTGTTCACTCACGCGC 57.772 47.368 5.73 0.00 0.00 6.86
1785 1849 0.179134 CCCGTCATCTTCGGTCAGTC 60.179 60.000 3.78 0.00 45.63 3.51
1820 1884 0.174389 TCTTGCTGCTGGTCGAGATC 59.826 55.000 0.00 0.00 0.00 2.75
1829 1893 5.592054 CTGCTGGTCGAGATCAACTTAATA 58.408 41.667 0.00 0.00 0.00 0.98
1830 1894 5.972935 TGCTGGTCGAGATCAACTTAATAA 58.027 37.500 0.00 0.00 0.00 1.40
1832 1896 6.043411 GCTGGTCGAGATCAACTTAATAACT 58.957 40.000 0.00 0.00 0.00 2.24
1833 1897 6.019479 GCTGGTCGAGATCAACTTAATAACTG 60.019 42.308 0.00 0.00 0.00 3.16
1835 1899 6.070995 TGGTCGAGATCAACTTAATAACTGGT 60.071 38.462 0.00 0.00 0.00 4.00
1840 1904 7.016153 AGATCAACTTAATAACTGGTGGACA 57.984 36.000 0.00 0.00 0.00 4.02
1847 1911 8.344446 ACTTAATAACTGGTGGACATAAAACC 57.656 34.615 0.00 0.00 34.38 3.27
1852 1916 6.493189 AACTGGTGGACATAAAACCAAATT 57.507 33.333 0.00 0.00 43.21 1.82
1855 1919 7.666623 ACTGGTGGACATAAAACCAAATTTAG 58.333 34.615 0.00 0.00 43.21 1.85
1865 1929 2.403259 ACCAAATTTAGTTGCGCTTGC 58.597 42.857 9.73 0.00 39.78 4.01
1869 1933 4.094911 CAAATTTAGTTGCGCTTGCGATA 58.905 39.130 19.55 3.77 43.34 2.92
1919 1987 2.639327 GGTGCAGGTGAATGGTGGC 61.639 63.158 0.00 0.00 0.00 5.01
1954 2022 0.744414 CCATAGTCAACACGGCCCTG 60.744 60.000 0.00 0.00 0.00 4.45
1957 2025 0.759959 TAGTCAACACGGCCCTGAAA 59.240 50.000 8.88 0.00 0.00 2.69
1960 2028 0.106918 TCAACACGGCCCTGAAAGTT 60.107 50.000 8.88 0.00 0.00 2.66
2046 2114 2.447070 CCGCCAAAGGTACGTACGC 61.447 63.158 16.72 14.70 0.00 4.42
2060 2213 2.883468 TACGCGGTGTGCAAAACGG 61.883 57.895 17.65 8.86 46.97 4.44
2068 2221 1.165907 TGTGCAAAACGGAGAGCTGG 61.166 55.000 0.00 0.00 0.00 4.85
2072 2225 2.235155 TGCAAAACGGAGAGCTGGTATA 59.765 45.455 0.00 0.00 0.00 1.47
2073 2226 2.866762 GCAAAACGGAGAGCTGGTATAG 59.133 50.000 0.00 0.00 0.00 1.31
2075 2228 1.041437 AACGGAGAGCTGGTATAGGC 58.959 55.000 0.00 0.00 0.00 3.93
2077 2230 1.867919 CGGAGAGCTGGTATAGGCCG 61.868 65.000 0.00 0.00 0.00 6.13
2078 2231 0.539901 GGAGAGCTGGTATAGGCCGA 60.540 60.000 0.00 0.00 0.00 5.54
2079 2232 0.599060 GAGAGCTGGTATAGGCCGAC 59.401 60.000 0.00 0.00 0.00 4.79
2080 2233 0.106167 AGAGCTGGTATAGGCCGACA 60.106 55.000 0.00 0.00 0.00 4.35
2090 2243 3.838244 ATAGGCCGACAGAAAATAGCA 57.162 42.857 0.00 0.00 0.00 3.49
2096 2249 4.295051 GCCGACAGAAAATAGCAAAACAA 58.705 39.130 0.00 0.00 0.00 2.83
2098 2251 5.233263 GCCGACAGAAAATAGCAAAACAAAA 59.767 36.000 0.00 0.00 0.00 2.44
2131 2284 4.202020 TACAAAAGTGTATGCCGTTTGCAA 60.202 37.500 0.00 0.00 45.94 4.08
2132 2285 6.014184 TACAAAAGTGTATGCCGTTTGCAAG 61.014 40.000 0.00 0.00 45.94 4.01
2166 2319 1.001624 GATGCATTTTTCGGCCTTGC 58.998 50.000 0.00 0.91 0.00 4.01
2179 2332 0.370273 GCCTTGCACTGACGTAATCG 59.630 55.000 0.00 0.00 43.34 3.34
2205 2358 0.320697 ACAAGTACGCCAGGAGGTTC 59.679 55.000 0.00 0.00 37.19 3.62
2222 2375 2.250188 GTTCGCCAATCAAAATCACCG 58.750 47.619 0.00 0.00 0.00 4.94
2259 2416 4.625607 AGATTTCGGTGTTTCTTCCTCT 57.374 40.909 0.00 0.00 0.00 3.69
2279 2436 2.375014 AAACGGAAAGGGAATGGTGT 57.625 45.000 0.00 0.00 0.00 4.16
2341 2498 1.825191 CCCGGTGATTGATGCCTGG 60.825 63.158 0.00 0.00 0.00 4.45
3077 3234 1.586154 CGTGCCCCAAGAACATGACC 61.586 60.000 0.00 0.00 0.00 4.02
3512 3672 2.819595 GCCATTCGCTTCCTCGCA 60.820 61.111 0.00 0.00 0.00 5.10
3564 3732 2.159667 CCATACGTGACACACAATGCAG 60.160 50.000 6.37 0.00 33.40 4.41
3589 3757 6.824305 AAGAACCAATTAACCTGTGAGATG 57.176 37.500 0.00 0.00 0.00 2.90
3596 3764 6.543465 CCAATTAACCTGTGAGATGCTCATTA 59.457 38.462 0.00 0.00 42.73 1.90
3597 3765 7.230108 CCAATTAACCTGTGAGATGCTCATTAT 59.770 37.037 0.00 0.00 42.73 1.28
3598 3766 7.741027 ATTAACCTGTGAGATGCTCATTATG 57.259 36.000 0.00 0.00 42.73 1.90
3599 3767 3.474600 ACCTGTGAGATGCTCATTATGC 58.525 45.455 0.00 0.00 42.73 3.14
3601 3769 3.473625 CTGTGAGATGCTCATTATGCCA 58.526 45.455 0.00 0.00 42.73 4.92
3605 3773 2.225963 GAGATGCTCATTATGCCACTGC 59.774 50.000 0.00 0.00 38.26 4.40
3606 3774 2.158652 AGATGCTCATTATGCCACTGCT 60.159 45.455 0.00 0.00 38.71 4.24
3607 3775 3.072038 AGATGCTCATTATGCCACTGCTA 59.928 43.478 0.00 0.00 38.71 3.49
3608 3776 3.497103 TGCTCATTATGCCACTGCTAT 57.503 42.857 0.00 0.00 38.71 2.97
3609 3777 3.143728 TGCTCATTATGCCACTGCTATG 58.856 45.455 0.00 0.00 38.71 2.23
3613 3781 5.289083 TCATTATGCCACTGCTATGTGTA 57.711 39.130 0.00 0.00 38.71 2.90
3614 3782 5.868454 TCATTATGCCACTGCTATGTGTAT 58.132 37.500 0.00 0.00 38.71 2.29
3615 3783 5.702209 TCATTATGCCACTGCTATGTGTATG 59.298 40.000 0.00 0.00 38.71 2.39
3616 3784 3.565764 ATGCCACTGCTATGTGTATGT 57.434 42.857 0.00 0.00 38.71 2.29
3617 3785 2.631267 TGCCACTGCTATGTGTATGTG 58.369 47.619 0.00 0.00 38.71 3.21
3995 4173 9.693157 GAAATATTTATTTTTGTGAGCATGCAC 57.307 29.630 21.98 15.08 36.13 4.57
4026 4206 2.078392 ACGGGCCTTGTTGTTAATACG 58.922 47.619 0.84 0.00 0.00 3.06
4034 4214 2.161030 TGTTGTTAATACGGCCCAACC 58.839 47.619 13.91 0.84 35.66 3.77
4045 4225 2.613506 GCCCAACCGAGAACCGTTG 61.614 63.158 0.00 0.00 36.31 4.10
4050 4230 0.748729 AACCGAGAACCGTTGCCAAA 60.749 50.000 0.00 0.00 36.31 3.28
4051 4231 0.748729 ACCGAGAACCGTTGCCAAAA 60.749 50.000 0.00 0.00 36.31 2.44
4082 4262 4.390264 TGTGGTGGATATTTGAACGTTGA 58.610 39.130 5.00 0.00 0.00 3.18
4098 4278 3.774702 GAACGGTCCAACTCGCGC 61.775 66.667 0.00 0.00 0.00 6.86
4099 4279 4.595538 AACGGTCCAACTCGCGCA 62.596 61.111 8.75 0.00 0.00 6.09
4112 4292 4.389576 GCGCACAAGCCCGTGAAG 62.390 66.667 0.30 1.83 39.34 3.02
4121 4301 2.982744 GCCCGTGAAGCAGGAAAGC 61.983 63.158 0.00 0.00 0.00 3.51
4124 4304 0.886490 CCGTGAAGCAGGAAAGCTGT 60.886 55.000 0.00 0.00 45.89 4.40
4127 4307 1.174712 TGAAGCAGGAAAGCTGTGCC 61.175 55.000 6.92 0.06 45.89 5.01
4133 4313 2.622436 CAGGAAAGCTGTGCCTAGTAC 58.378 52.381 0.00 0.00 0.00 2.73
4134 4314 2.028112 CAGGAAAGCTGTGCCTAGTACA 60.028 50.000 0.00 0.00 0.00 2.90
4135 4315 2.840651 AGGAAAGCTGTGCCTAGTACAT 59.159 45.455 0.00 0.00 0.00 2.29
4136 4316 3.264450 AGGAAAGCTGTGCCTAGTACATT 59.736 43.478 0.00 0.00 0.00 2.71
4138 4318 4.811557 GGAAAGCTGTGCCTAGTACATTAG 59.188 45.833 0.00 0.00 0.00 1.73
4139 4319 5.395324 GGAAAGCTGTGCCTAGTACATTAGA 60.395 44.000 0.00 0.00 0.00 2.10
4140 4320 4.927978 AGCTGTGCCTAGTACATTAGAG 57.072 45.455 0.00 0.00 0.00 2.43
4141 4321 3.068873 AGCTGTGCCTAGTACATTAGAGC 59.931 47.826 0.00 0.00 0.00 4.09
4142 4322 3.068873 GCTGTGCCTAGTACATTAGAGCT 59.931 47.826 0.00 0.00 0.00 4.09
4143 4323 4.442192 GCTGTGCCTAGTACATTAGAGCTT 60.442 45.833 0.00 0.00 0.00 3.74
4144 4324 5.665459 CTGTGCCTAGTACATTAGAGCTTT 58.335 41.667 0.00 0.00 0.00 3.51
4145 4325 5.661458 TGTGCCTAGTACATTAGAGCTTTC 58.339 41.667 0.00 0.00 0.00 2.62
4146 4326 5.186992 TGTGCCTAGTACATTAGAGCTTTCA 59.813 40.000 0.00 0.00 0.00 2.69
4147 4327 6.106673 GTGCCTAGTACATTAGAGCTTTCAA 58.893 40.000 0.00 0.00 0.00 2.69
4148 4328 6.594159 GTGCCTAGTACATTAGAGCTTTCAAA 59.406 38.462 0.00 0.00 0.00 2.69
4149 4329 6.594159 TGCCTAGTACATTAGAGCTTTCAAAC 59.406 38.462 0.00 0.00 0.00 2.93
4150 4330 6.819146 GCCTAGTACATTAGAGCTTTCAAACT 59.181 38.462 0.00 0.00 0.00 2.66
4151 4331 7.980099 GCCTAGTACATTAGAGCTTTCAAACTA 59.020 37.037 0.00 0.00 0.00 2.24
4152 4332 9.871238 CCTAGTACATTAGAGCTTTCAAACTAA 57.129 33.333 0.00 0.00 0.00 2.24
4156 4336 9.827411 GTACATTAGAGCTTTCAAACTAAAAGG 57.173 33.333 0.00 0.00 34.88 3.11
4157 4337 8.691661 ACATTAGAGCTTTCAAACTAAAAGGA 57.308 30.769 0.00 0.00 34.88 3.36
4158 4338 8.568794 ACATTAGAGCTTTCAAACTAAAAGGAC 58.431 33.333 0.00 0.00 34.88 3.85
4159 4339 8.567948 CATTAGAGCTTTCAAACTAAAAGGACA 58.432 33.333 0.00 0.00 34.88 4.02
4160 4340 8.691661 TTAGAGCTTTCAAACTAAAAGGACAT 57.308 30.769 0.00 0.00 34.88 3.06
4161 4341 6.974965 AGAGCTTTCAAACTAAAAGGACATG 58.025 36.000 0.00 0.00 34.88 3.21
4162 4342 6.015940 AGAGCTTTCAAACTAAAAGGACATGG 60.016 38.462 0.00 0.00 34.88 3.66
4163 4343 5.598417 AGCTTTCAAACTAAAAGGACATGGT 59.402 36.000 0.00 0.00 34.88 3.55
4164 4344 5.920840 GCTTTCAAACTAAAAGGACATGGTC 59.079 40.000 0.00 0.00 34.88 4.02
4165 4345 5.682943 TTCAAACTAAAAGGACATGGTCG 57.317 39.130 0.00 0.00 32.65 4.79
4166 4346 3.500680 TCAAACTAAAAGGACATGGTCGC 59.499 43.478 0.00 0.00 32.65 5.19
4167 4347 2.851263 ACTAAAAGGACATGGTCGCA 57.149 45.000 0.00 0.00 32.65 5.10
4168 4348 3.350219 ACTAAAAGGACATGGTCGCAT 57.650 42.857 0.00 0.00 32.65 4.73
4169 4349 3.009723 ACTAAAAGGACATGGTCGCATG 58.990 45.455 0.00 0.00 38.46 4.06
4170 4350 2.198827 AAAAGGACATGGTCGCATGA 57.801 45.000 9.62 0.00 36.48 3.07
4171 4351 1.453155 AAAGGACATGGTCGCATGAC 58.547 50.000 9.62 3.95 44.72 3.06
4172 4352 0.615331 AAGGACATGGTCGCATGACT 59.385 50.000 9.62 5.06 44.83 3.41
4173 4353 0.107993 AGGACATGGTCGCATGACTG 60.108 55.000 9.62 0.00 44.83 3.51
4174 4354 1.091771 GGACATGGTCGCATGACTGG 61.092 60.000 9.62 0.00 44.83 4.00
4175 4355 1.709147 GACATGGTCGCATGACTGGC 61.709 60.000 9.62 0.00 44.83 4.85
4176 4356 1.450848 CATGGTCGCATGACTGGCT 60.451 57.895 0.00 0.00 44.83 4.75
4177 4357 1.028330 CATGGTCGCATGACTGGCTT 61.028 55.000 0.00 0.00 44.83 4.35
4178 4358 0.322816 ATGGTCGCATGACTGGCTTT 60.323 50.000 0.00 0.00 44.83 3.51
4179 4359 1.236616 TGGTCGCATGACTGGCTTTG 61.237 55.000 0.00 0.00 44.83 2.77
4180 4360 0.955428 GGTCGCATGACTGGCTTTGA 60.955 55.000 0.00 0.00 44.83 2.69
4426 4606 2.035321 CCTCCCAGAGTCTATTTCTCGC 59.965 54.545 0.00 0.00 37.07 5.03
4427 4607 2.690497 CTCCCAGAGTCTATTTCTCGCA 59.310 50.000 0.00 0.00 37.07 5.10
4428 4608 3.300388 TCCCAGAGTCTATTTCTCGCAT 58.700 45.455 0.00 0.00 37.07 4.73
4429 4609 3.706594 TCCCAGAGTCTATTTCTCGCATT 59.293 43.478 0.00 0.00 37.07 3.56
4430 4610 3.806521 CCCAGAGTCTATTTCTCGCATTG 59.193 47.826 0.00 0.00 37.07 2.82
4431 4611 4.442052 CCCAGAGTCTATTTCTCGCATTGA 60.442 45.833 0.00 0.00 37.07 2.57
4432 4612 4.744137 CCAGAGTCTATTTCTCGCATTGAG 59.256 45.833 0.00 0.00 46.72 3.02
4433 4613 4.208873 CAGAGTCTATTTCTCGCATTGAGC 59.791 45.833 0.00 0.00 44.86 4.26
4442 4622 4.794164 GCATTGAGCGAGACGAGA 57.206 55.556 0.00 0.00 0.00 4.04
4443 4623 2.576083 GCATTGAGCGAGACGAGAG 58.424 57.895 0.00 0.00 0.00 3.20
4459 4639 3.474007 GAGTTCACTCTCGCGTTGA 57.526 52.632 5.77 5.14 39.81 3.18
4460 4640 1.332178 GAGTTCACTCTCGCGTTGAG 58.668 55.000 22.80 22.80 46.72 3.02
4472 4652 4.206698 TCGCGTTGAGAGCTATAGTAAC 57.793 45.455 5.77 0.00 0.00 2.50
4473 4653 3.624410 TCGCGTTGAGAGCTATAGTAACA 59.376 43.478 5.77 0.00 0.00 2.41
4474 4654 3.969352 CGCGTTGAGAGCTATAGTAACAG 59.031 47.826 0.00 0.00 0.00 3.16
4475 4655 4.291783 GCGTTGAGAGCTATAGTAACAGG 58.708 47.826 0.84 0.00 0.00 4.00
4476 4656 4.291783 CGTTGAGAGCTATAGTAACAGGC 58.708 47.826 0.84 0.00 0.00 4.85
4477 4657 4.623002 GTTGAGAGCTATAGTAACAGGCC 58.377 47.826 0.00 0.00 0.00 5.19
4478 4658 2.885266 TGAGAGCTATAGTAACAGGCCG 59.115 50.000 0.00 0.00 0.00 6.13
4479 4659 2.229302 GAGAGCTATAGTAACAGGCCGG 59.771 54.545 0.00 0.00 0.00 6.13
4480 4660 0.680061 AGCTATAGTAACAGGCCGGC 59.320 55.000 21.18 21.18 0.00 6.13
4481 4661 0.320508 GCTATAGTAACAGGCCGGCC 60.321 60.000 39.29 39.29 0.00 6.13
4482 4662 1.045407 CTATAGTAACAGGCCGGCCA 58.955 55.000 45.13 25.14 38.92 5.36
4483 4663 1.623811 CTATAGTAACAGGCCGGCCAT 59.376 52.381 45.13 31.85 38.92 4.40
4484 4664 0.843984 ATAGTAACAGGCCGGCCATT 59.156 50.000 45.13 37.13 38.92 3.16
4485 4665 1.498264 TAGTAACAGGCCGGCCATTA 58.502 50.000 45.13 36.07 38.92 1.90
4486 4666 0.107361 AGTAACAGGCCGGCCATTAC 60.107 55.000 39.90 39.90 38.83 1.89
4487 4667 0.393267 GTAACAGGCCGGCCATTACA 60.393 55.000 40.68 26.48 38.61 2.41
4488 4668 0.393267 TAACAGGCCGGCCATTACAC 60.393 55.000 45.13 18.64 38.92 2.90
4489 4669 3.202001 CAGGCCGGCCATTACACG 61.202 66.667 45.13 20.68 38.92 4.49
4492 4672 3.573491 GCCGGCCATTACACGCTC 61.573 66.667 18.11 0.00 0.00 5.03
4493 4673 3.261951 CCGGCCATTACACGCTCG 61.262 66.667 2.24 0.00 0.00 5.03
4494 4674 2.508439 CGGCCATTACACGCTCGT 60.508 61.111 2.24 0.00 0.00 4.18
4495 4675 1.226745 CGGCCATTACACGCTCGTA 60.227 57.895 2.24 0.00 0.00 3.43
4496 4676 1.206745 CGGCCATTACACGCTCGTAG 61.207 60.000 2.24 0.00 0.00 3.51
4497 4677 0.179119 GGCCATTACACGCTCGTAGT 60.179 55.000 0.00 0.00 0.00 2.73
4498 4678 1.197910 GCCATTACACGCTCGTAGTC 58.802 55.000 0.00 0.00 0.00 2.59
4499 4679 1.468565 GCCATTACACGCTCGTAGTCA 60.469 52.381 0.00 0.00 0.00 3.41
4500 4680 2.871133 CCATTACACGCTCGTAGTCAA 58.129 47.619 0.00 0.00 0.00 3.18
4501 4681 3.247442 CCATTACACGCTCGTAGTCAAA 58.753 45.455 0.00 0.00 0.00 2.69
4502 4682 3.676172 CCATTACACGCTCGTAGTCAAAA 59.324 43.478 0.00 0.00 0.00 2.44
4503 4683 4.150980 CCATTACACGCTCGTAGTCAAAAA 59.849 41.667 0.00 0.00 0.00 1.94
4521 4701 2.532250 AAAGGCAGAGGTAAATGGGG 57.468 50.000 0.00 0.00 0.00 4.96
4522 4702 0.631212 AAGGCAGAGGTAAATGGGGG 59.369 55.000 0.00 0.00 0.00 5.40
4523 4703 0.552615 AGGCAGAGGTAAATGGGGGT 60.553 55.000 0.00 0.00 0.00 4.95
4524 4704 0.395724 GGCAGAGGTAAATGGGGGTG 60.396 60.000 0.00 0.00 0.00 4.61
4525 4705 0.331616 GCAGAGGTAAATGGGGGTGT 59.668 55.000 0.00 0.00 0.00 4.16
4526 4706 1.272480 GCAGAGGTAAATGGGGGTGTT 60.272 52.381 0.00 0.00 0.00 3.32
4527 4707 2.446435 CAGAGGTAAATGGGGGTGTTG 58.554 52.381 0.00 0.00 0.00 3.33
4528 4708 2.041081 CAGAGGTAAATGGGGGTGTTGA 59.959 50.000 0.00 0.00 0.00 3.18
4529 4709 2.308866 AGAGGTAAATGGGGGTGTTGAG 59.691 50.000 0.00 0.00 0.00 3.02
4530 4710 1.182667 GGTAAATGGGGGTGTTGAGC 58.817 55.000 0.00 0.00 0.00 4.26
4531 4711 1.549037 GGTAAATGGGGGTGTTGAGCA 60.549 52.381 0.00 0.00 0.00 4.26
4532 4712 1.818674 GTAAATGGGGGTGTTGAGCAG 59.181 52.381 0.00 0.00 0.00 4.24
4533 4713 0.482446 AAATGGGGGTGTTGAGCAGA 59.518 50.000 0.00 0.00 0.00 4.26
4534 4714 0.038744 AATGGGGGTGTTGAGCAGAG 59.961 55.000 0.00 0.00 0.00 3.35
4535 4715 2.360475 GGGGGTGTTGAGCAGAGC 60.360 66.667 0.00 0.00 0.00 4.09
4536 4716 2.753029 GGGGTGTTGAGCAGAGCT 59.247 61.111 0.00 0.00 43.88 4.09
4545 4725 3.627690 AGCAGAGCTCCTAGCCAC 58.372 61.111 10.93 0.00 43.77 5.01
4546 4726 1.001503 AGCAGAGCTCCTAGCCACT 59.998 57.895 10.93 0.00 43.77 4.00
4547 4727 0.260230 AGCAGAGCTCCTAGCCACTA 59.740 55.000 10.93 0.00 43.77 2.74
4548 4728 0.673437 GCAGAGCTCCTAGCCACTAG 59.327 60.000 10.93 0.00 43.77 2.57
4559 4739 3.220222 CCACTAGGCTCATGGCGA 58.780 61.111 4.17 0.00 44.18 5.54
4560 4740 1.068753 CCACTAGGCTCATGGCGAG 59.931 63.158 4.17 0.00 44.63 5.03
4561 4741 4.364318 ACTAGGCTCATGGCGAGT 57.636 55.556 0.00 0.15 46.41 4.18
4563 4743 2.983433 CTAGGCTCATGGCGAGTTG 58.017 57.895 0.00 0.00 44.33 3.16
4564 4744 0.531532 CTAGGCTCATGGCGAGTTGG 60.532 60.000 0.00 0.00 44.33 3.77
4565 4745 1.264749 TAGGCTCATGGCGAGTTGGT 61.265 55.000 0.00 0.00 44.33 3.67
4566 4746 2.401766 GGCTCATGGCGAGTTGGTG 61.402 63.158 0.00 0.00 44.33 4.17
4567 4747 1.672356 GCTCATGGCGAGTTGGTGT 60.672 57.895 0.00 0.00 44.33 4.16
4568 4748 1.237285 GCTCATGGCGAGTTGGTGTT 61.237 55.000 0.00 0.00 44.33 3.32
4569 4749 0.798776 CTCATGGCGAGTTGGTGTTC 59.201 55.000 0.00 0.00 36.94 3.18
4570 4750 0.107643 TCATGGCGAGTTGGTGTTCA 59.892 50.000 0.00 0.00 0.00 3.18
4571 4751 0.950836 CATGGCGAGTTGGTGTTCAA 59.049 50.000 0.00 0.00 0.00 2.69
4572 4752 1.336440 CATGGCGAGTTGGTGTTCAAA 59.664 47.619 0.00 0.00 37.08 2.69
4573 4753 1.686355 TGGCGAGTTGGTGTTCAAAT 58.314 45.000 0.00 0.00 37.08 2.32
4574 4754 2.852449 TGGCGAGTTGGTGTTCAAATA 58.148 42.857 0.00 0.00 37.08 1.40
4575 4755 2.811431 TGGCGAGTTGGTGTTCAAATAG 59.189 45.455 0.00 0.00 37.08 1.73
4576 4756 2.414161 GGCGAGTTGGTGTTCAAATAGC 60.414 50.000 3.47 3.47 46.21 2.97
4577 4757 2.484264 GCGAGTTGGTGTTCAAATAGCT 59.516 45.455 0.00 0.00 44.52 3.32
4578 4758 3.667960 GCGAGTTGGTGTTCAAATAGCTG 60.668 47.826 0.00 0.00 44.52 4.24
4579 4759 3.120199 CGAGTTGGTGTTCAAATAGCTGG 60.120 47.826 0.00 0.00 37.08 4.85
4580 4760 3.157087 AGTTGGTGTTCAAATAGCTGGG 58.843 45.455 0.00 0.00 37.08 4.45
4581 4761 1.544724 TGGTGTTCAAATAGCTGGGC 58.455 50.000 0.00 0.00 0.00 5.36
4582 4762 1.202989 TGGTGTTCAAATAGCTGGGCA 60.203 47.619 0.00 0.00 0.00 5.36
4583 4763 1.202348 GGTGTTCAAATAGCTGGGCAC 59.798 52.381 0.00 0.00 0.00 5.01
4584 4764 1.135689 GTGTTCAAATAGCTGGGCACG 60.136 52.381 0.00 0.00 0.00 5.34
4585 4765 0.179163 GTTCAAATAGCTGGGCACGC 60.179 55.000 0.00 0.00 0.00 5.34
4586 4766 1.312371 TTCAAATAGCTGGGCACGCC 61.312 55.000 0.00 0.00 0.00 5.68
4596 4776 2.125106 GGCACGCCCTACTTGAGG 60.125 66.667 0.00 0.00 46.25 3.86
4597 4777 2.820037 GCACGCCCTACTTGAGGC 60.820 66.667 0.00 0.00 45.17 4.70
4606 4786 3.809905 CCCTACTTGAGGCATAAAGACC 58.190 50.000 1.57 0.00 45.17 3.85
4607 4787 3.458189 CCTACTTGAGGCATAAAGACCG 58.542 50.000 1.57 0.00 38.96 4.79
4608 4788 2.403252 ACTTGAGGCATAAAGACCGG 57.597 50.000 1.57 0.00 0.00 5.28
4609 4789 1.628846 ACTTGAGGCATAAAGACCGGT 59.371 47.619 6.92 6.92 0.00 5.28
4610 4790 2.039879 ACTTGAGGCATAAAGACCGGTT 59.960 45.455 9.42 0.00 0.00 4.44
4611 4791 2.871096 TGAGGCATAAAGACCGGTTT 57.129 45.000 9.42 0.00 0.00 3.27
4612 4792 3.149005 TGAGGCATAAAGACCGGTTTT 57.851 42.857 9.42 6.53 0.00 2.43
4613 4793 3.078837 TGAGGCATAAAGACCGGTTTTC 58.921 45.455 9.42 0.00 0.00 2.29
4614 4794 3.078837 GAGGCATAAAGACCGGTTTTCA 58.921 45.455 9.42 0.00 0.00 2.69
4615 4795 2.817844 AGGCATAAAGACCGGTTTTCAC 59.182 45.455 9.42 0.00 0.00 3.18
4616 4796 2.817844 GGCATAAAGACCGGTTTTCACT 59.182 45.455 9.42 0.00 0.00 3.41
4617 4797 3.365969 GGCATAAAGACCGGTTTTCACTG 60.366 47.826 9.42 9.05 0.00 3.66
4625 4805 3.512033 CCGGTTTTCACTGGTTTTTCA 57.488 42.857 0.00 0.00 43.90 2.69
4626 4806 3.443976 CCGGTTTTCACTGGTTTTTCAG 58.556 45.455 0.00 0.00 43.90 3.02
4627 4807 3.443976 CGGTTTTCACTGGTTTTTCAGG 58.556 45.455 0.00 0.00 38.98 3.86
4628 4808 3.119280 CGGTTTTCACTGGTTTTTCAGGT 60.119 43.478 0.00 0.00 38.98 4.00
4629 4809 4.619628 CGGTTTTCACTGGTTTTTCAGGTT 60.620 41.667 0.00 0.00 38.98 3.50
4630 4810 5.242434 GGTTTTCACTGGTTTTTCAGGTTT 58.758 37.500 0.00 0.00 38.98 3.27
4631 4811 5.703592 GGTTTTCACTGGTTTTTCAGGTTTT 59.296 36.000 0.00 0.00 38.98 2.43
4632 4812 6.205853 GGTTTTCACTGGTTTTTCAGGTTTTT 59.794 34.615 0.00 0.00 38.98 1.94
4685 4865 9.581099 TTCTTCTGTGTTATTTGGTTTTTCTTC 57.419 29.630 0.00 0.00 0.00 2.87
4686 4866 8.194769 TCTTCTGTGTTATTTGGTTTTTCTTCC 58.805 33.333 0.00 0.00 0.00 3.46
4687 4867 7.654022 TCTGTGTTATTTGGTTTTTCTTCCT 57.346 32.000 0.00 0.00 0.00 3.36
4688 4868 8.073467 TCTGTGTTATTTGGTTTTTCTTCCTT 57.927 30.769 0.00 0.00 0.00 3.36
4689 4869 8.536175 TCTGTGTTATTTGGTTTTTCTTCCTTT 58.464 29.630 0.00 0.00 0.00 3.11
4690 4870 9.161629 CTGTGTTATTTGGTTTTTCTTCCTTTT 57.838 29.630 0.00 0.00 0.00 2.27
4691 4871 9.508642 TGTGTTATTTGGTTTTTCTTCCTTTTT 57.491 25.926 0.00 0.00 0.00 1.94
4770 4950 8.764524 TTTTTCTTTGTTTCCTCGAATTTCAA 57.235 26.923 0.00 0.00 0.00 2.69
4771 4951 8.940768 TTTTCTTTGTTTCCTCGAATTTCAAT 57.059 26.923 0.00 0.00 0.00 2.57
4772 4952 7.928908 TTCTTTGTTTCCTCGAATTTCAATG 57.071 32.000 0.00 0.00 0.00 2.82
4773 4953 5.920273 TCTTTGTTTCCTCGAATTTCAATGC 59.080 36.000 0.00 0.00 0.00 3.56
4774 4954 5.452078 TTGTTTCCTCGAATTTCAATGCT 57.548 34.783 0.00 0.00 0.00 3.79
4775 4955 5.452078 TGTTTCCTCGAATTTCAATGCTT 57.548 34.783 0.00 0.00 0.00 3.91
4776 4956 5.841810 TGTTTCCTCGAATTTCAATGCTTT 58.158 33.333 0.00 0.00 0.00 3.51
4777 4957 6.279882 TGTTTCCTCGAATTTCAATGCTTTT 58.720 32.000 0.00 0.00 0.00 2.27
4778 4958 6.760770 TGTTTCCTCGAATTTCAATGCTTTTT 59.239 30.769 0.00 0.00 0.00 1.94
4840 5020 9.482627 TTTTTGTAACAAGTGATCAACAACTTT 57.517 25.926 7.69 0.00 0.00 2.66
4841 5021 9.482627 TTTTGTAACAAGTGATCAACAACTTTT 57.517 25.926 7.69 3.51 0.00 2.27
4842 5022 9.482627 TTTGTAACAAGTGATCAACAACTTTTT 57.517 25.926 7.69 4.69 0.00 1.94
4843 5023 8.459521 TGTAACAAGTGATCAACAACTTTTTG 57.540 30.769 0.00 0.00 38.83 2.44
4845 5025 9.562583 GTAACAAGTGATCAACAACTTTTTGTA 57.437 29.630 0.00 0.00 45.69 2.41
4865 5045 8.789881 TTTGTATAAACTTTCAACATTGTCCG 57.210 30.769 0.00 0.00 0.00 4.79
4866 5046 7.731882 TGTATAAACTTTCAACATTGTCCGA 57.268 32.000 0.00 0.00 0.00 4.55
4867 5047 8.155821 TGTATAAACTTTCAACATTGTCCGAA 57.844 30.769 0.00 0.00 0.00 4.30
4868 5048 8.071368 TGTATAAACTTTCAACATTGTCCGAAC 58.929 33.333 0.00 0.00 0.00 3.95
4869 5049 4.974368 AACTTTCAACATTGTCCGAACA 57.026 36.364 0.00 0.00 0.00 3.18
4870 5050 4.287238 ACTTTCAACATTGTCCGAACAC 57.713 40.909 0.00 0.00 34.35 3.32
4871 5051 3.945285 ACTTTCAACATTGTCCGAACACT 59.055 39.130 0.00 0.00 34.35 3.55
4872 5052 5.120399 ACTTTCAACATTGTCCGAACACTA 58.880 37.500 0.00 0.00 34.35 2.74
4873 5053 5.763204 ACTTTCAACATTGTCCGAACACTAT 59.237 36.000 0.00 0.00 34.35 2.12
4874 5054 6.262273 ACTTTCAACATTGTCCGAACACTATT 59.738 34.615 0.00 0.00 34.35 1.73
4875 5055 6.627395 TTCAACATTGTCCGAACACTATTT 57.373 33.333 0.00 0.00 34.35 1.40
4876 5056 6.236017 TCAACATTGTCCGAACACTATTTC 57.764 37.500 0.00 0.00 34.35 2.17
4877 5057 5.760743 TCAACATTGTCCGAACACTATTTCA 59.239 36.000 0.00 0.00 34.35 2.69
4878 5058 6.261158 TCAACATTGTCCGAACACTATTTCAA 59.739 34.615 0.00 0.00 34.35 2.69
4879 5059 5.997385 ACATTGTCCGAACACTATTTCAAC 58.003 37.500 0.00 0.00 34.35 3.18
4880 5060 5.529430 ACATTGTCCGAACACTATTTCAACA 59.471 36.000 0.00 0.00 34.35 3.33
4881 5061 6.206634 ACATTGTCCGAACACTATTTCAACAT 59.793 34.615 0.00 0.00 34.35 2.71
4882 5062 6.627395 TTGTCCGAACACTATTTCAACATT 57.373 33.333 0.00 0.00 34.35 2.71
4883 5063 6.627395 TGTCCGAACACTATTTCAACATTT 57.373 33.333 0.00 0.00 0.00 2.32
4884 5064 7.033530 TGTCCGAACACTATTTCAACATTTT 57.966 32.000 0.00 0.00 0.00 1.82
4885 5065 7.484975 TGTCCGAACACTATTTCAACATTTTT 58.515 30.769 0.00 0.00 0.00 1.94
4886 5066 7.646130 TGTCCGAACACTATTTCAACATTTTTC 59.354 33.333 0.00 0.00 0.00 2.29
4887 5067 7.646130 GTCCGAACACTATTTCAACATTTTTCA 59.354 33.333 0.00 0.00 0.00 2.69
4888 5068 7.860373 TCCGAACACTATTTCAACATTTTTCAG 59.140 33.333 0.00 0.00 0.00 3.02
4889 5069 7.860373 CCGAACACTATTTCAACATTTTTCAGA 59.140 33.333 0.00 0.00 0.00 3.27
4890 5070 9.398170 CGAACACTATTTCAACATTTTTCAGAT 57.602 29.630 0.00 0.00 0.00 2.90
4901 5081 9.515020 TCAACATTTTTCAGATACTTGTTCAAC 57.485 29.630 0.00 0.00 0.00 3.18
4902 5082 9.299963 CAACATTTTTCAGATACTTGTTCAACA 57.700 29.630 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.033626 CACCTCCTTACTTATAGAAGAAAACGT 58.966 37.037 3.65 0.00 36.45 3.99
1 2 7.010275 GCACCTCCTTACTTATAGAAGAAAACG 59.990 40.741 3.65 0.00 36.45 3.60
2 3 8.041919 AGCACCTCCTTACTTATAGAAGAAAAC 58.958 37.037 3.65 0.00 36.45 2.43
82 83 6.936279 AGGTTTCACTCCATATACATATCCG 58.064 40.000 0.00 0.00 0.00 4.18
152 153 1.669779 CAGTTGCCAAGATCAGCTAGC 59.330 52.381 6.62 6.62 0.00 3.42
177 179 6.294397 GGCAAAAGAAAATCTGAGACACTGAT 60.294 38.462 0.00 0.00 38.50 2.90
183 185 3.573967 TGGGGCAAAAGAAAATCTGAGAC 59.426 43.478 0.00 0.00 0.00 3.36
186 188 6.642430 CATTATGGGGCAAAAGAAAATCTGA 58.358 36.000 0.00 0.00 0.00 3.27
189 191 5.430886 AGCATTATGGGGCAAAAGAAAATC 58.569 37.500 0.00 0.00 0.00 2.17
218 220 5.819379 CCTTGAGATTGATGAATTCCGAGAA 59.181 40.000 2.27 0.00 0.00 2.87
247 251 1.280998 GTAGTGGGGCCTTTCTTGCTA 59.719 52.381 0.84 0.00 0.00 3.49
355 385 3.694072 TGACAAATCCAAATCATCCGGAC 59.306 43.478 6.12 0.00 0.00 4.79
374 404 1.737008 GGGAAGAACGACGGCTGAC 60.737 63.158 0.00 0.00 0.00 3.51
391 421 2.190578 GGTTGCGATGGAGGGAGG 59.809 66.667 0.00 0.00 0.00 4.30
392 422 2.032860 ATCGGTTGCGATGGAGGGAG 62.033 60.000 0.00 0.00 0.00 4.30
393 423 1.622607 AATCGGTTGCGATGGAGGGA 61.623 55.000 0.00 0.00 0.00 4.20
394 424 0.748005 AAATCGGTTGCGATGGAGGG 60.748 55.000 0.00 0.00 0.00 4.30
466 500 2.668945 GAGAAGTGAGAGGTAAAAGCGC 59.331 50.000 0.00 0.00 0.00 5.92
467 501 3.254892 GGAGAAGTGAGAGGTAAAAGCG 58.745 50.000 0.00 0.00 0.00 4.68
468 502 3.262151 AGGGAGAAGTGAGAGGTAAAAGC 59.738 47.826 0.00 0.00 0.00 3.51
494 528 1.795962 GCGTTTCAAATCCGGTGCG 60.796 57.895 0.00 0.00 0.00 5.34
541 575 1.722464 CAGTGGTTTGATTTGCATGCG 59.278 47.619 14.09 0.00 0.00 4.73
625 659 1.372683 CGGGTAGCTAGCCATGCAT 59.627 57.895 34.69 0.00 43.88 3.96
708 742 4.598894 CATCAGGGCCGGAGCGAG 62.599 72.222 12.92 0.00 41.24 5.03
997 1041 0.876399 GTAGCGTCTAGGGCTCTAGC 59.124 60.000 16.37 10.06 42.01 3.42
998 1042 1.202782 TGGTAGCGTCTAGGGCTCTAG 60.203 57.143 15.01 15.01 43.27 2.43
999 1043 0.841961 TGGTAGCGTCTAGGGCTCTA 59.158 55.000 11.72 0.00 41.80 2.43
1027 1071 1.022735 TGAAGACCGGACGAGATAGC 58.977 55.000 9.46 0.00 0.00 2.97
1035 1079 0.109039 GAGAGCAGTGAAGACCGGAC 60.109 60.000 9.46 0.10 0.00 4.79
1169 1224 3.492102 ACACGGCCTGCAGATAATTAT 57.508 42.857 17.39 0.00 0.00 1.28
1175 1230 2.167398 AACGTACACGGCCTGCAGAT 62.167 55.000 17.39 0.00 44.95 2.90
1184 1239 3.092854 GTTTCAACAACAACGTACACGG 58.907 45.455 6.72 0.00 44.95 4.94
1185 1240 3.993547 AGTTTCAACAACAACGTACACG 58.006 40.909 0.00 0.00 46.33 4.49
1406 1461 1.478631 AGCTTAAAGCCAGGGAATGC 58.521 50.000 0.00 0.00 43.77 3.56
1431 1486 3.371285 GGCGGAACAAACTCTAGCTAAAG 59.629 47.826 0.00 0.00 0.00 1.85
1439 1494 1.663702 CGACGGCGGAACAAACTCT 60.664 57.895 13.24 0.00 0.00 3.24
1785 1849 2.793933 CAAGATTTCAATCGCAGCAGG 58.206 47.619 0.00 0.00 40.35 4.85
1820 1884 9.620660 GTTTTATGTCCACCAGTTATTAAGTTG 57.379 33.333 0.00 0.00 0.00 3.16
1829 1893 6.493189 AATTTGGTTTTATGTCCACCAGTT 57.507 33.333 0.00 0.00 41.65 3.16
1830 1894 6.493189 AAATTTGGTTTTATGTCCACCAGT 57.507 33.333 0.00 0.00 41.65 4.00
1832 1896 7.604657 ACTAAATTTGGTTTTATGTCCACCA 57.395 32.000 0.65 0.00 38.89 4.17
1833 1897 7.095397 GCAACTAAATTTGGTTTTATGTCCACC 60.095 37.037 16.38 0.00 33.12 4.61
1835 1899 6.642950 CGCAACTAAATTTGGTTTTATGTCCA 59.357 34.615 16.38 0.00 28.78 4.02
1840 1904 6.347321 GCAAGCGCAACTAAATTTGGTTTTAT 60.347 34.615 16.38 2.08 38.36 1.40
1847 1911 2.315011 TCGCAAGCGCAACTAAATTTG 58.685 42.857 11.47 3.47 38.40 2.32
1852 1916 2.933260 TCAATATCGCAAGCGCAACTAA 59.067 40.909 11.47 0.00 38.40 2.24
1855 1919 2.301787 GATCAATATCGCAAGCGCAAC 58.698 47.619 11.47 0.00 38.40 4.17
1865 1929 6.715464 AAGCCAACTTTTACGATCAATATCG 58.285 36.000 6.25 6.25 46.40 2.92
2046 2114 1.569493 CTCTCCGTTTTGCACACCG 59.431 57.895 0.00 0.00 0.00 4.94
2060 2213 0.599060 GTCGGCCTATACCAGCTCTC 59.401 60.000 0.00 0.00 0.00 3.20
2068 2221 4.628074 TGCTATTTTCTGTCGGCCTATAC 58.372 43.478 0.00 0.00 0.00 1.47
2072 2225 2.489938 TTGCTATTTTCTGTCGGCCT 57.510 45.000 0.00 0.00 0.00 5.19
2073 2226 3.242518 GTTTTGCTATTTTCTGTCGGCC 58.757 45.455 0.00 0.00 0.00 6.13
2075 2228 6.820470 TTTTGTTTTGCTATTTTCTGTCGG 57.180 33.333 0.00 0.00 0.00 4.79
2096 2249 7.655732 GCATACACTTTTGTATTGGGTCTTTTT 59.344 33.333 0.00 0.00 45.14 1.94
2098 2251 6.295067 GGCATACACTTTTGTATTGGGTCTTT 60.295 38.462 0.00 0.00 45.14 2.52
2101 2254 4.438200 CGGCATACACTTTTGTATTGGGTC 60.438 45.833 0.00 0.00 45.14 4.46
2103 2256 3.442273 ACGGCATACACTTTTGTATTGGG 59.558 43.478 0.00 0.00 45.14 4.12
2104 2257 4.695217 ACGGCATACACTTTTGTATTGG 57.305 40.909 0.00 0.00 45.14 3.16
2105 2258 5.164100 GCAAACGGCATACACTTTTGTATTG 60.164 40.000 0.00 0.00 45.14 1.90
2108 2261 3.891324 GCAAACGGCATACACTTTTGTA 58.109 40.909 0.00 0.00 42.53 2.41
2121 2274 2.658268 AAAGCGCTTGCAAACGGC 60.658 55.556 25.80 14.78 42.66 5.68
2122 2275 1.588667 ACAAAGCGCTTGCAAACGG 60.589 52.632 25.80 9.18 42.66 4.44
2123 2276 1.554595 CACAAAGCGCTTGCAAACG 59.445 52.632 25.80 17.56 42.66 3.60
2124 2277 1.273594 GCACAAAGCGCTTGCAAAC 59.726 52.632 25.80 9.03 42.66 2.93
2125 2278 3.703547 GCACAAAGCGCTTGCAAA 58.296 50.000 25.80 0.00 42.66 3.68
2134 2287 0.171903 ATGCATCGGAAGCACAAAGC 59.828 50.000 10.38 0.00 45.95 3.51
2179 2332 1.571919 CTGGCGTACTTGTCTATGGC 58.428 55.000 0.00 0.00 0.00 4.40
2205 2358 2.627863 TTCGGTGATTTTGATTGGCG 57.372 45.000 0.00 0.00 0.00 5.69
2222 2375 5.982056 GAAATCTTGTTCGATGCACTTTC 57.018 39.130 0.00 0.00 0.00 2.62
2259 2416 3.512219 ACACCATTCCCTTTCCGTTTA 57.488 42.857 0.00 0.00 0.00 2.01
2279 2436 9.019656 ACATTGCAATGACCTAAACAACTTATA 57.980 29.630 38.99 0.00 39.67 0.98
2332 2489 2.101783 CAAATGTTAGGCCAGGCATCA 58.898 47.619 15.19 1.06 0.00 3.07
2341 2498 1.153842 GGCGCACCAAATGTTAGGC 60.154 57.895 10.83 0.00 35.26 3.93
2533 2690 0.640768 GTCTGCATGCGTTCGTAGTC 59.359 55.000 14.09 0.00 0.00 2.59
2535 2692 0.366871 GTGTCTGCATGCGTTCGTAG 59.633 55.000 14.09 3.47 0.00 3.51
2536 2693 1.341369 CGTGTCTGCATGCGTTCGTA 61.341 55.000 14.09 0.00 0.00 3.43
2872 3029 1.079336 TCGAAGCTCGACGAGGAGA 60.079 57.895 25.31 3.46 44.82 3.71
3512 3672 4.351111 AGAATTCTGTTACCTGGGTTGTCT 59.649 41.667 7.30 0.00 0.00 3.41
3564 3732 7.626452 GCATCTCACAGGTTAATTGGTTCTTAC 60.626 40.741 0.00 0.00 0.00 2.34
3589 3757 3.058432 CACATAGCAGTGGCATAATGAGC 60.058 47.826 0.00 0.00 44.61 4.26
3596 3764 3.208594 CACATACACATAGCAGTGGCAT 58.791 45.455 8.50 0.06 43.72 4.40
3597 3765 2.631267 CACATACACATAGCAGTGGCA 58.369 47.619 8.50 0.00 43.72 4.92
3598 3766 1.942657 CCACATACACATAGCAGTGGC 59.057 52.381 8.50 0.00 43.72 5.01
3601 3769 2.027285 TGCACCACATACACATAGCAGT 60.027 45.455 0.00 0.00 0.00 4.40
3605 3773 2.938451 CACCTGCACCACATACACATAG 59.062 50.000 0.00 0.00 0.00 2.23
3606 3774 2.304470 ACACCTGCACCACATACACATA 59.696 45.455 0.00 0.00 0.00 2.29
3607 3775 1.073763 ACACCTGCACCACATACACAT 59.926 47.619 0.00 0.00 0.00 3.21
3608 3776 0.472044 ACACCTGCACCACATACACA 59.528 50.000 0.00 0.00 0.00 3.72
3609 3777 2.465860 TACACCTGCACCACATACAC 57.534 50.000 0.00 0.00 0.00 2.90
3613 3781 0.698238 ACCATACACCTGCACCACAT 59.302 50.000 0.00 0.00 0.00 3.21
3614 3782 0.476338 AACCATACACCTGCACCACA 59.524 50.000 0.00 0.00 0.00 4.17
3615 3783 1.165270 GAACCATACACCTGCACCAC 58.835 55.000 0.00 0.00 0.00 4.16
3616 3784 0.767998 TGAACCATACACCTGCACCA 59.232 50.000 0.00 0.00 0.00 4.17
3617 3785 1.745087 CATGAACCATACACCTGCACC 59.255 52.381 0.00 0.00 0.00 5.01
3777 3951 1.402787 ATGAGGGGGCGCAAATTAAG 58.597 50.000 10.83 0.00 0.00 1.85
3899 4073 5.382618 AAACATCTTCATCAGAAAGTGGC 57.617 39.130 0.00 0.00 34.16 5.01
3949 4127 7.898725 ATTTCGATATTTTCTCGTGCAATTC 57.101 32.000 0.00 0.00 37.40 2.17
4026 4206 3.837570 AACGGTTCTCGGTTGGGCC 62.838 63.158 0.00 0.00 44.45 5.80
4034 4214 3.928343 TTTTTGGCAACGGTTCTCG 57.072 47.368 0.00 0.00 45.88 4.04
4070 4250 2.290464 TGGACCGTTCAACGTTCAAAT 58.710 42.857 9.87 0.00 40.58 2.32
4082 4262 4.595538 TGCGCGAGTTGGACCGTT 62.596 61.111 12.10 0.00 0.00 4.44
4098 4278 2.620112 CCTGCTTCACGGGCTTGTG 61.620 63.158 4.38 4.38 38.23 3.33
4099 4279 2.281761 CCTGCTTCACGGGCTTGT 60.282 61.111 0.00 0.00 38.23 3.16
4112 4292 0.322008 ACTAGGCACAGCTTTCCTGC 60.322 55.000 8.11 1.95 45.78 4.85
4121 4301 4.927978 AGCTCTAATGTACTAGGCACAG 57.072 45.455 5.77 1.36 0.00 3.66
4124 4304 5.932619 TGAAAGCTCTAATGTACTAGGCA 57.067 39.130 0.00 0.00 0.00 4.75
4133 4313 8.567948 TGTCCTTTTAGTTTGAAAGCTCTAATG 58.432 33.333 0.00 0.00 33.75 1.90
4134 4314 8.691661 TGTCCTTTTAGTTTGAAAGCTCTAAT 57.308 30.769 0.00 0.00 33.75 1.73
4135 4315 8.567948 CATGTCCTTTTAGTTTGAAAGCTCTAA 58.432 33.333 0.00 0.00 33.75 2.10
4136 4316 7.174946 CCATGTCCTTTTAGTTTGAAAGCTCTA 59.825 37.037 0.00 0.00 33.75 2.43
4138 4318 6.152379 CCATGTCCTTTTAGTTTGAAAGCTC 58.848 40.000 0.00 0.00 33.75 4.09
4139 4319 5.598417 ACCATGTCCTTTTAGTTTGAAAGCT 59.402 36.000 0.00 0.00 33.75 3.74
4140 4320 5.842907 ACCATGTCCTTTTAGTTTGAAAGC 58.157 37.500 0.00 0.00 33.75 3.51
4141 4321 6.142817 CGACCATGTCCTTTTAGTTTGAAAG 58.857 40.000 0.00 0.00 34.63 2.62
4142 4322 5.506649 GCGACCATGTCCTTTTAGTTTGAAA 60.507 40.000 0.00 0.00 0.00 2.69
4143 4323 4.023536 GCGACCATGTCCTTTTAGTTTGAA 60.024 41.667 0.00 0.00 0.00 2.69
4144 4324 3.500680 GCGACCATGTCCTTTTAGTTTGA 59.499 43.478 0.00 0.00 0.00 2.69
4145 4325 3.252215 TGCGACCATGTCCTTTTAGTTTG 59.748 43.478 0.00 0.00 0.00 2.93
4146 4326 3.482436 TGCGACCATGTCCTTTTAGTTT 58.518 40.909 0.00 0.00 0.00 2.66
4147 4327 3.134574 TGCGACCATGTCCTTTTAGTT 57.865 42.857 0.00 0.00 0.00 2.24
4148 4328 2.851263 TGCGACCATGTCCTTTTAGT 57.149 45.000 0.00 0.00 0.00 2.24
4149 4329 3.680642 CATGCGACCATGTCCTTTTAG 57.319 47.619 0.00 0.00 43.07 1.85
4159 4339 0.322816 AAAGCCAGTCATGCGACCAT 60.323 50.000 0.00 0.00 43.73 3.55
4160 4340 1.073025 AAAGCCAGTCATGCGACCA 59.927 52.632 0.00 0.00 43.73 4.02
4161 4341 0.955428 TCAAAGCCAGTCATGCGACC 60.955 55.000 0.00 0.00 43.73 4.79
4162 4342 2.543578 TCAAAGCCAGTCATGCGAC 58.456 52.632 0.00 0.00 42.95 5.19
4405 4585 2.035321 GCGAGAAATAGACTCTGGGAGG 59.965 54.545 0.00 0.00 33.35 4.30
4406 4586 2.690497 TGCGAGAAATAGACTCTGGGAG 59.310 50.000 0.00 0.00 35.52 4.30
4407 4587 2.735151 TGCGAGAAATAGACTCTGGGA 58.265 47.619 0.00 0.00 32.87 4.37
4408 4588 3.742433 ATGCGAGAAATAGACTCTGGG 57.258 47.619 0.00 0.00 32.87 4.45
4409 4589 4.686972 TCAATGCGAGAAATAGACTCTGG 58.313 43.478 0.00 0.00 32.87 3.86
4410 4590 4.208873 GCTCAATGCGAGAAATAGACTCTG 59.791 45.833 0.00 0.00 45.45 3.35
4411 4591 4.367450 GCTCAATGCGAGAAATAGACTCT 58.633 43.478 0.00 0.00 45.45 3.24
4412 4592 4.707210 GCTCAATGCGAGAAATAGACTC 57.293 45.455 0.00 0.00 45.45 3.36
4425 4605 0.179150 ACTCTCGTCTCGCTCAATGC 60.179 55.000 0.00 0.00 38.57 3.56
4426 4606 2.181205 GAACTCTCGTCTCGCTCAATG 58.819 52.381 0.00 0.00 0.00 2.82
4427 4607 1.813178 TGAACTCTCGTCTCGCTCAAT 59.187 47.619 0.00 0.00 0.00 2.57
4428 4608 1.069159 GTGAACTCTCGTCTCGCTCAA 60.069 52.381 0.00 0.00 0.00 3.02
4429 4609 0.517755 GTGAACTCTCGTCTCGCTCA 59.482 55.000 0.00 0.00 0.00 4.26
4430 4610 0.800012 AGTGAACTCTCGTCTCGCTC 59.200 55.000 0.00 0.00 0.00 5.03
4431 4611 0.800012 GAGTGAACTCTCGTCTCGCT 59.200 55.000 3.13 0.00 39.81 4.93
4432 4612 3.299738 GAGTGAACTCTCGTCTCGC 57.700 57.895 3.13 0.00 39.81 5.03
4441 4621 1.069159 TCTCAACGCGAGAGTGAACTC 60.069 52.381 24.56 2.06 46.18 3.01
4442 4622 0.952280 TCTCAACGCGAGAGTGAACT 59.048 50.000 24.56 0.00 46.18 3.01
4443 4623 3.474007 TCTCAACGCGAGAGTGAAC 57.526 52.632 24.56 0.00 46.18 3.18
4450 4630 4.212911 GTTACTATAGCTCTCAACGCGAG 58.787 47.826 15.93 4.76 43.80 5.03
4451 4631 3.624410 TGTTACTATAGCTCTCAACGCGA 59.376 43.478 15.93 0.00 0.00 5.87
4452 4632 3.948851 TGTTACTATAGCTCTCAACGCG 58.051 45.455 3.53 3.53 0.00 6.01
4453 4633 4.291783 CCTGTTACTATAGCTCTCAACGC 58.708 47.826 0.00 0.00 0.00 4.84
4454 4634 4.291783 GCCTGTTACTATAGCTCTCAACG 58.708 47.826 0.00 0.00 0.00 4.10
4455 4635 4.623002 GGCCTGTTACTATAGCTCTCAAC 58.377 47.826 0.00 0.00 0.00 3.18
4456 4636 3.318275 CGGCCTGTTACTATAGCTCTCAA 59.682 47.826 0.00 0.00 0.00 3.02
4457 4637 2.885266 CGGCCTGTTACTATAGCTCTCA 59.115 50.000 0.00 0.00 0.00 3.27
4458 4638 2.229302 CCGGCCTGTTACTATAGCTCTC 59.771 54.545 0.00 0.00 0.00 3.20
4459 4639 2.240279 CCGGCCTGTTACTATAGCTCT 58.760 52.381 0.00 0.00 0.00 4.09
4460 4640 1.336980 GCCGGCCTGTTACTATAGCTC 60.337 57.143 18.11 0.00 0.00 4.09
4461 4641 0.680061 GCCGGCCTGTTACTATAGCT 59.320 55.000 18.11 0.00 0.00 3.32
4462 4642 0.320508 GGCCGGCCTGTTACTATAGC 60.321 60.000 38.76 6.46 0.00 2.97
4463 4643 1.045407 TGGCCGGCCTGTTACTATAG 58.955 55.000 43.34 0.00 36.94 1.31
4464 4644 1.724545 ATGGCCGGCCTGTTACTATA 58.275 50.000 43.34 22.75 36.94 1.31
4465 4645 0.843984 AATGGCCGGCCTGTTACTAT 59.156 50.000 43.34 25.53 36.94 2.12
4466 4646 1.139455 GTAATGGCCGGCCTGTTACTA 59.861 52.381 38.73 26.56 36.22 1.82
4467 4647 0.107361 GTAATGGCCGGCCTGTTACT 60.107 55.000 38.73 25.58 36.22 2.24
4468 4648 0.393267 TGTAATGGCCGGCCTGTTAC 60.393 55.000 39.07 39.07 37.85 2.50
4469 4649 0.393267 GTGTAATGGCCGGCCTGTTA 60.393 55.000 43.34 34.90 36.94 2.41
4470 4650 1.677633 GTGTAATGGCCGGCCTGTT 60.678 57.895 43.34 35.90 36.94 3.16
4471 4651 2.045340 GTGTAATGGCCGGCCTGT 60.045 61.111 43.34 32.34 36.94 4.00
4472 4652 3.202001 CGTGTAATGGCCGGCCTG 61.202 66.667 43.34 21.01 36.94 4.85
4475 4655 3.573491 GAGCGTGTAATGGCCGGC 61.573 66.667 21.18 21.18 0.00 6.13
4476 4656 2.616786 TACGAGCGTGTAATGGCCGG 62.617 60.000 5.69 0.00 0.00 6.13
4477 4657 1.206745 CTACGAGCGTGTAATGGCCG 61.207 60.000 5.69 0.00 0.00 6.13
4478 4658 0.179119 ACTACGAGCGTGTAATGGCC 60.179 55.000 5.69 0.00 0.00 5.36
4479 4659 1.197910 GACTACGAGCGTGTAATGGC 58.802 55.000 5.69 0.00 0.00 4.40
4480 4660 2.554806 TGACTACGAGCGTGTAATGG 57.445 50.000 5.69 0.00 0.00 3.16
4481 4661 4.896562 TTTTGACTACGAGCGTGTAATG 57.103 40.909 5.69 0.00 0.00 1.90
4500 4680 3.173151 CCCCATTTACCTCTGCCTTTTT 58.827 45.455 0.00 0.00 0.00 1.94
4501 4681 2.559705 CCCCCATTTACCTCTGCCTTTT 60.560 50.000 0.00 0.00 0.00 2.27
4502 4682 1.007118 CCCCCATTTACCTCTGCCTTT 59.993 52.381 0.00 0.00 0.00 3.11
4503 4683 0.631212 CCCCCATTTACCTCTGCCTT 59.369 55.000 0.00 0.00 0.00 4.35
4504 4684 0.552615 ACCCCCATTTACCTCTGCCT 60.553 55.000 0.00 0.00 0.00 4.75
4505 4685 0.395724 CACCCCCATTTACCTCTGCC 60.396 60.000 0.00 0.00 0.00 4.85
4506 4686 0.331616 ACACCCCCATTTACCTCTGC 59.668 55.000 0.00 0.00 0.00 4.26
4507 4687 2.041081 TCAACACCCCCATTTACCTCTG 59.959 50.000 0.00 0.00 0.00 3.35
4508 4688 2.308866 CTCAACACCCCCATTTACCTCT 59.691 50.000 0.00 0.00 0.00 3.69
4509 4689 2.723273 CTCAACACCCCCATTTACCTC 58.277 52.381 0.00 0.00 0.00 3.85
4510 4690 1.272480 GCTCAACACCCCCATTTACCT 60.272 52.381 0.00 0.00 0.00 3.08
4511 4691 1.182667 GCTCAACACCCCCATTTACC 58.817 55.000 0.00 0.00 0.00 2.85
4512 4692 1.818674 CTGCTCAACACCCCCATTTAC 59.181 52.381 0.00 0.00 0.00 2.01
4513 4693 1.707989 TCTGCTCAACACCCCCATTTA 59.292 47.619 0.00 0.00 0.00 1.40
4514 4694 0.482446 TCTGCTCAACACCCCCATTT 59.518 50.000 0.00 0.00 0.00 2.32
4515 4695 0.038744 CTCTGCTCAACACCCCCATT 59.961 55.000 0.00 0.00 0.00 3.16
4516 4696 1.687612 CTCTGCTCAACACCCCCAT 59.312 57.895 0.00 0.00 0.00 4.00
4517 4697 3.160585 CTCTGCTCAACACCCCCA 58.839 61.111 0.00 0.00 0.00 4.96
4518 4698 2.360475 GCTCTGCTCAACACCCCC 60.360 66.667 0.00 0.00 0.00 5.40
4519 4699 2.753029 AGCTCTGCTCAACACCCC 59.247 61.111 0.00 0.00 30.62 4.95
4528 4708 0.260230 TAGTGGCTAGGAGCTCTGCT 59.740 55.000 14.64 5.67 41.99 4.24
4529 4709 0.673437 CTAGTGGCTAGGAGCTCTGC 59.327 60.000 14.64 14.91 41.99 4.26
4542 4722 1.068753 CTCGCCATGAGCCTAGTGG 59.931 63.158 0.00 0.00 38.03 4.00
4543 4723 4.746361 CTCGCCATGAGCCTAGTG 57.254 61.111 0.00 0.00 38.03 2.74
4551 4731 0.107643 TGAACACCAACTCGCCATGA 59.892 50.000 0.00 0.00 0.00 3.07
4552 4732 0.950836 TTGAACACCAACTCGCCATG 59.049 50.000 0.00 0.00 0.00 3.66
4553 4733 1.686355 TTTGAACACCAACTCGCCAT 58.314 45.000 0.00 0.00 33.85 4.40
4554 4734 1.686355 ATTTGAACACCAACTCGCCA 58.314 45.000 0.00 0.00 33.85 5.69
4555 4735 2.414161 GCTATTTGAACACCAACTCGCC 60.414 50.000 0.00 0.00 33.85 5.54
4556 4736 2.484264 AGCTATTTGAACACCAACTCGC 59.516 45.455 0.00 0.00 33.85 5.03
4557 4737 3.120199 CCAGCTATTTGAACACCAACTCG 60.120 47.826 0.00 0.00 33.85 4.18
4558 4738 3.191371 CCCAGCTATTTGAACACCAACTC 59.809 47.826 0.00 0.00 33.85 3.01
4559 4739 3.157087 CCCAGCTATTTGAACACCAACT 58.843 45.455 0.00 0.00 33.85 3.16
4560 4740 2.352715 GCCCAGCTATTTGAACACCAAC 60.353 50.000 0.00 0.00 33.85 3.77
4561 4741 1.892474 GCCCAGCTATTTGAACACCAA 59.108 47.619 0.00 0.00 0.00 3.67
4562 4742 1.202989 TGCCCAGCTATTTGAACACCA 60.203 47.619 0.00 0.00 0.00 4.17
4563 4743 1.202348 GTGCCCAGCTATTTGAACACC 59.798 52.381 0.00 0.00 0.00 4.16
4564 4744 1.135689 CGTGCCCAGCTATTTGAACAC 60.136 52.381 0.00 0.00 0.00 3.32
4565 4745 1.164411 CGTGCCCAGCTATTTGAACA 58.836 50.000 0.00 0.00 0.00 3.18
4566 4746 0.179163 GCGTGCCCAGCTATTTGAAC 60.179 55.000 0.00 0.00 0.00 3.18
4567 4747 1.312371 GGCGTGCCCAGCTATTTGAA 61.312 55.000 0.00 0.00 34.52 2.69
4568 4748 1.748879 GGCGTGCCCAGCTATTTGA 60.749 57.895 0.00 0.00 34.52 2.69
4569 4749 2.800736 GGCGTGCCCAGCTATTTG 59.199 61.111 0.00 0.00 34.52 2.32
4579 4759 2.125106 CCTCAAGTAGGGCGTGCC 60.125 66.667 1.16 1.16 42.32 5.01
4580 4760 2.820037 GCCTCAAGTAGGGCGTGC 60.820 66.667 0.00 0.00 46.65 5.34
4584 4764 3.206964 GTCTTTATGCCTCAAGTAGGGC 58.793 50.000 0.00 0.00 46.65 5.19
4585 4765 3.741388 CGGTCTTTATGCCTCAAGTAGGG 60.741 52.174 0.00 0.00 46.65 3.53
4587 4767 3.118738 ACCGGTCTTTATGCCTCAAGTAG 60.119 47.826 0.00 0.00 0.00 2.57
4588 4768 2.835764 ACCGGTCTTTATGCCTCAAGTA 59.164 45.455 0.00 0.00 0.00 2.24
4589 4769 1.628846 ACCGGTCTTTATGCCTCAAGT 59.371 47.619 0.00 0.00 0.00 3.16
4590 4770 2.403252 ACCGGTCTTTATGCCTCAAG 57.597 50.000 0.00 0.00 0.00 3.02
4591 4771 2.871096 AACCGGTCTTTATGCCTCAA 57.129 45.000 8.04 0.00 0.00 3.02
4592 4772 2.871096 AAACCGGTCTTTATGCCTCA 57.129 45.000 8.04 0.00 0.00 3.86
4593 4773 3.078837 TGAAAACCGGTCTTTATGCCTC 58.921 45.455 8.04 0.00 0.00 4.70
4594 4774 2.817844 GTGAAAACCGGTCTTTATGCCT 59.182 45.455 8.04 0.00 0.00 4.75
4595 4775 2.817844 AGTGAAAACCGGTCTTTATGCC 59.182 45.455 8.04 0.19 0.00 4.40
4596 4776 3.365969 CCAGTGAAAACCGGTCTTTATGC 60.366 47.826 8.04 5.12 0.00 3.14
4597 4777 3.818773 ACCAGTGAAAACCGGTCTTTATG 59.181 43.478 8.04 10.14 0.00 1.90
4598 4778 4.094830 ACCAGTGAAAACCGGTCTTTAT 57.905 40.909 8.04 0.00 0.00 1.40
4599 4779 3.564053 ACCAGTGAAAACCGGTCTTTA 57.436 42.857 8.04 0.00 0.00 1.85
4600 4780 2.430248 ACCAGTGAAAACCGGTCTTT 57.570 45.000 8.04 11.06 0.00 2.52
4601 4781 2.430248 AACCAGTGAAAACCGGTCTT 57.570 45.000 8.04 0.00 0.00 3.01
4602 4782 2.430248 AAACCAGTGAAAACCGGTCT 57.570 45.000 8.04 0.00 0.00 3.85
4603 4783 3.119424 TGAAAAACCAGTGAAAACCGGTC 60.119 43.478 8.04 0.00 0.00 4.79
4604 4784 2.826725 TGAAAAACCAGTGAAAACCGGT 59.173 40.909 0.00 0.00 0.00 5.28
4605 4785 3.443976 CTGAAAAACCAGTGAAAACCGG 58.556 45.455 0.00 0.00 0.00 5.28
4606 4786 3.119280 ACCTGAAAAACCAGTGAAAACCG 60.119 43.478 0.00 0.00 32.43 4.44
4607 4787 4.465632 ACCTGAAAAACCAGTGAAAACC 57.534 40.909 0.00 0.00 32.43 3.27
4608 4788 6.795098 AAAACCTGAAAAACCAGTGAAAAC 57.205 33.333 0.00 0.00 32.43 2.43
4659 4839 9.581099 GAAGAAAAACCAAATAACACAGAAGAA 57.419 29.630 0.00 0.00 0.00 2.52
4660 4840 8.194769 GGAAGAAAAACCAAATAACACAGAAGA 58.805 33.333 0.00 0.00 0.00 2.87
4661 4841 8.197439 AGGAAGAAAAACCAAATAACACAGAAG 58.803 33.333 0.00 0.00 0.00 2.85
4662 4842 8.073467 AGGAAGAAAAACCAAATAACACAGAA 57.927 30.769 0.00 0.00 0.00 3.02
4663 4843 7.654022 AGGAAGAAAAACCAAATAACACAGA 57.346 32.000 0.00 0.00 0.00 3.41
4664 4844 8.716646 AAAGGAAGAAAAACCAAATAACACAG 57.283 30.769 0.00 0.00 0.00 3.66
4665 4845 9.508642 AAAAAGGAAGAAAAACCAAATAACACA 57.491 25.926 0.00 0.00 0.00 3.72
4745 4925 8.764524 TTGAAATTCGAGGAAACAAAGAAAAA 57.235 26.923 0.00 0.00 0.00 1.94
4746 4926 8.816144 CATTGAAATTCGAGGAAACAAAGAAAA 58.184 29.630 0.00 0.00 0.00 2.29
4747 4927 7.042791 GCATTGAAATTCGAGGAAACAAAGAAA 60.043 33.333 0.00 0.00 0.00 2.52
4748 4928 6.420604 GCATTGAAATTCGAGGAAACAAAGAA 59.579 34.615 0.00 0.00 0.00 2.52
4749 4929 5.920273 GCATTGAAATTCGAGGAAACAAAGA 59.080 36.000 0.00 0.00 0.00 2.52
4750 4930 5.922544 AGCATTGAAATTCGAGGAAACAAAG 59.077 36.000 0.00 0.00 0.00 2.77
4751 4931 5.841810 AGCATTGAAATTCGAGGAAACAAA 58.158 33.333 0.00 0.00 0.00 2.83
4752 4932 5.452078 AGCATTGAAATTCGAGGAAACAA 57.548 34.783 0.00 0.00 0.00 2.83
4753 4933 5.452078 AAGCATTGAAATTCGAGGAAACA 57.548 34.783 0.00 0.00 0.00 2.83
4754 4934 6.769608 AAAAGCATTGAAATTCGAGGAAAC 57.230 33.333 0.00 0.00 0.00 2.78
4814 4994 9.482627 AAAGTTGTTGATCACTTGTTACAAAAA 57.517 25.926 9.38 0.00 0.00 1.94
4815 4995 9.482627 AAAAGTTGTTGATCACTTGTTACAAAA 57.517 25.926 9.38 0.00 0.00 2.44
4816 4996 9.482627 AAAAAGTTGTTGATCACTTGTTACAAA 57.517 25.926 9.38 0.00 0.00 2.83
4817 4997 8.920665 CAAAAAGTTGTTGATCACTTGTTACAA 58.079 29.630 0.00 0.00 0.00 2.41
4818 4998 8.085296 ACAAAAAGTTGTTGATCACTTGTTACA 58.915 29.630 12.87 0.00 46.01 2.41
4819 4999 8.460831 ACAAAAAGTTGTTGATCACTTGTTAC 57.539 30.769 12.87 0.00 46.01 2.50
4839 5019 9.239002 CGGACAATGTTGAAAGTTTATACAAAA 57.761 29.630 0.00 0.00 0.00 2.44
4840 5020 8.622157 TCGGACAATGTTGAAAGTTTATACAAA 58.378 29.630 0.00 0.00 0.00 2.83
4841 5021 8.155821 TCGGACAATGTTGAAAGTTTATACAA 57.844 30.769 0.00 0.00 0.00 2.41
4842 5022 7.731882 TCGGACAATGTTGAAAGTTTATACA 57.268 32.000 0.00 5.13 0.00 2.29
4843 5023 8.071368 TGTTCGGACAATGTTGAAAGTTTATAC 58.929 33.333 0.00 0.00 31.49 1.47
4844 5024 8.071368 GTGTTCGGACAATGTTGAAAGTTTATA 58.929 33.333 0.00 0.00 37.57 0.98
4845 5025 6.915843 GTGTTCGGACAATGTTGAAAGTTTAT 59.084 34.615 0.00 0.00 37.57 1.40
4846 5026 6.094325 AGTGTTCGGACAATGTTGAAAGTTTA 59.906 34.615 0.00 0.00 37.57 2.01
4847 5027 5.099575 GTGTTCGGACAATGTTGAAAGTTT 58.900 37.500 0.00 0.00 37.57 2.66
4848 5028 4.398044 AGTGTTCGGACAATGTTGAAAGTT 59.602 37.500 0.00 0.00 37.57 2.66
4849 5029 3.945285 AGTGTTCGGACAATGTTGAAAGT 59.055 39.130 0.00 0.00 37.57 2.66
4850 5030 4.552166 AGTGTTCGGACAATGTTGAAAG 57.448 40.909 0.00 0.00 37.57 2.62
4851 5031 6.627395 AATAGTGTTCGGACAATGTTGAAA 57.373 33.333 7.14 0.00 34.59 2.69
4852 5032 6.261158 TGAAATAGTGTTCGGACAATGTTGAA 59.739 34.615 7.14 0.00 35.76 2.69
4853 5033 5.760743 TGAAATAGTGTTCGGACAATGTTGA 59.239 36.000 7.14 0.00 35.76 3.18
4854 5034 5.996219 TGAAATAGTGTTCGGACAATGTTG 58.004 37.500 7.14 0.00 35.76 3.33
4855 5035 6.038825 TGTTGAAATAGTGTTCGGACAATGTT 59.961 34.615 7.14 3.36 36.88 2.71
4856 5036 5.529430 TGTTGAAATAGTGTTCGGACAATGT 59.471 36.000 7.14 0.00 37.57 2.71
4857 5037 5.996219 TGTTGAAATAGTGTTCGGACAATG 58.004 37.500 7.14 0.00 37.57 2.82
4858 5038 6.817765 ATGTTGAAATAGTGTTCGGACAAT 57.182 33.333 0.93 0.93 37.57 2.71
4859 5039 6.627395 AATGTTGAAATAGTGTTCGGACAA 57.373 33.333 0.00 0.00 37.57 3.18
4860 5040 6.627395 AAATGTTGAAATAGTGTTCGGACA 57.373 33.333 0.00 0.00 33.49 4.02
4861 5041 7.646130 TGAAAAATGTTGAAATAGTGTTCGGAC 59.354 33.333 0.00 0.00 0.00 4.79
4862 5042 7.708051 TGAAAAATGTTGAAATAGTGTTCGGA 58.292 30.769 0.00 0.00 0.00 4.55
4863 5043 7.860373 TCTGAAAAATGTTGAAATAGTGTTCGG 59.140 33.333 0.00 0.00 0.00 4.30
4864 5044 8.781067 TCTGAAAAATGTTGAAATAGTGTTCG 57.219 30.769 0.00 0.00 0.00 3.95
4875 5055 9.515020 GTTGAACAAGTATCTGAAAAATGTTGA 57.485 29.630 6.89 0.00 30.37 3.18
4876 5056 9.299963 TGTTGAACAAGTATCTGAAAAATGTTG 57.700 29.630 0.00 0.00 30.37 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.