Multiple sequence alignment - TraesCS3D01G354000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G354000 chr3D 100.000 3497 0 0 1 3497 464334724 464331228 0.000000e+00 6458.0
1 TraesCS3D01G354000 chr3D 88.746 853 93 1 919 1768 464721073 464720221 0.000000e+00 1040.0
2 TraesCS3D01G354000 chr3D 90.909 693 63 0 1821 2513 464720205 464719513 0.000000e+00 931.0
3 TraesCS3D01G354000 chr3D 88.246 570 62 5 2870 3435 464317195 464316627 0.000000e+00 676.0
4 TraesCS3D01G354000 chr3D 84.889 450 53 11 2989 3435 464324551 464324114 1.150000e-119 440.0
5 TraesCS3D01G354000 chr3D 88.742 151 17 0 2989 3139 464311493 464311343 5.960000e-43 185.0
6 TraesCS3D01G354000 chr3D 75.434 403 65 19 186 570 23211939 23211553 7.770000e-37 165.0
7 TraesCS3D01G354000 chr3D 83.133 166 22 6 424 583 35357596 35357431 2.810000e-31 147.0
8 TraesCS3D01G354000 chr3D 79.042 167 22 6 213 376 578154045 578153889 6.180000e-18 102.0
9 TraesCS3D01G354000 chr3A 91.592 1891 103 17 795 2661 607509799 607507941 0.000000e+00 2560.0
10 TraesCS3D01G354000 chr3A 87.911 761 51 13 2703 3454 607487798 607487070 0.000000e+00 857.0
11 TraesCS3D01G354000 chr3A 88.626 677 77 0 1310 1986 608113461 608112785 0.000000e+00 824.0
12 TraesCS3D01G354000 chr3A 87.845 543 50 11 2870 3408 607462396 607461866 1.070000e-174 623.0
13 TraesCS3D01G354000 chr3A 90.336 476 39 6 1995 2463 608112304 608111829 4.960000e-173 617.0
14 TraesCS3D01G354000 chr3A 86.606 545 56 13 2869 3411 607467920 607467391 1.400000e-163 586.0
15 TraesCS3D01G354000 chr3A 85.038 528 65 8 275 793 607510592 607510070 3.090000e-145 525.0
16 TraesCS3D01G354000 chr3A 86.772 378 46 2 932 1306 608118846 608118470 5.400000e-113 418.0
17 TraesCS3D01G354000 chr3A 88.485 165 17 1 3242 3406 607448477 607448315 7.660000e-47 198.0
18 TraesCS3D01G354000 chr3A 82.727 110 17 2 268 375 671700064 671700173 2.870000e-16 97.1
19 TraesCS3D01G354000 chr3A 95.745 47 2 0 181 227 607510643 607510597 3.740000e-10 76.8
20 TraesCS3D01G354000 chr2B 82.728 1488 225 19 985 2467 13154063 13155523 0.000000e+00 1295.0
21 TraesCS3D01G354000 chr2B 81.610 1528 233 25 986 2506 13392083 13393569 0.000000e+00 1221.0
22 TraesCS3D01G354000 chr2B 82.640 1250 193 14 1226 2467 13219743 13220976 0.000000e+00 1085.0
23 TraesCS3D01G354000 chr2B 84.080 201 28 4 986 1183 13207527 13207726 1.280000e-44 191.0
24 TraesCS3D01G354000 chr2B 97.222 36 1 0 392 427 632648019 632647984 1.050000e-05 62.1
25 TraesCS3D01G354000 chr2D 82.055 1499 233 26 986 2468 9873283 9874761 0.000000e+00 1245.0
26 TraesCS3D01G354000 chr2D 75.333 900 182 30 1023 1917 570081676 570082540 2.530000e-106 396.0
27 TraesCS3D01G354000 chr3B 89.546 947 95 3 1584 2526 618008463 618007517 0.000000e+00 1197.0
28 TraesCS3D01G354000 chr3B 87.646 599 40 17 2904 3496 618003176 618002606 0.000000e+00 665.0
29 TraesCS3D01G354000 chr3B 89.319 543 39 13 2870 3411 617887624 617887100 0.000000e+00 664.0
30 TraesCS3D01G354000 chr3B 87.529 425 40 9 2989 3413 617988943 617988532 2.440000e-131 479.0
31 TraesCS3D01G354000 chr3B 90.663 332 29 1 918 1249 618008792 618008463 1.150000e-119 440.0
32 TraesCS3D01G354000 chr3B 91.489 47 4 0 2904 2950 617994124 617994078 8.100000e-07 65.8
33 TraesCS3D01G354000 chr2A 84.300 1000 151 4 1478 2474 9124544 9125540 0.000000e+00 972.0
34 TraesCS3D01G354000 chr1A 77.068 1487 260 55 1023 2473 456243412 456244853 0.000000e+00 782.0
35 TraesCS3D01G354000 chr1A 84.706 170 12 8 424 583 139557675 139557840 1.300000e-34 158.0
36 TraesCS3D01G354000 chr4A 75.778 1478 272 53 1023 2463 626954578 626953150 0.000000e+00 667.0
37 TraesCS3D01G354000 chr5D 75.017 1505 290 56 996 2463 542106127 542107582 4.960000e-173 617.0
38 TraesCS3D01G354000 chr5D 82.313 147 20 6 274 419 524511006 524510865 4.740000e-24 122.0
39 TraesCS3D01G354000 chr5D 97.143 35 1 0 51 85 385961363 385961397 3.770000e-05 60.2
40 TraesCS3D01G354000 chr5D 90.698 43 1 2 381 420 30684864 30684906 2.000000e-03 54.7
41 TraesCS3D01G354000 chrUn 81.174 409 74 1 1822 2230 478013392 478013797 3.370000e-85 326.0
42 TraesCS3D01G354000 chrUn 85.235 149 20 2 424 570 359528555 359528407 6.050000e-33 152.0
43 TraesCS3D01G354000 chr6A 86.000 150 18 3 424 570 579004129 579004278 1.300000e-34 158.0
44 TraesCS3D01G354000 chr4D 83.537 164 23 4 424 583 10966743 10966906 2.170000e-32 150.0
45 TraesCS3D01G354000 chr4D 80.882 136 20 6 212 345 499590544 499590675 6.180000e-18 102.0
46 TraesCS3D01G354000 chr7B 83.436 163 24 3 424 583 598005653 598005815 7.820000e-32 148.0
47 TraesCS3D01G354000 chr6D 83.133 166 22 5 424 583 432806913 432806748 2.810000e-31 147.0
48 TraesCS3D01G354000 chr7D 82.857 140 17 6 221 357 566936990 566936855 6.130000e-23 119.0
49 TraesCS3D01G354000 chr7D 94.872 39 1 1 47 85 69244027 69244064 3.770000e-05 60.2
50 TraesCS3D01G354000 chr4B 84.762 105 12 2 213 316 90885850 90885951 6.180000e-18 102.0
51 TraesCS3D01G354000 chr1D 78.417 139 23 6 289 423 101570974 101570839 2.240000e-12 84.2
52 TraesCS3D01G354000 chr7A 79.630 108 15 4 215 317 732856036 732855931 1.740000e-08 71.3
53 TraesCS3D01G354000 chr6B 76.866 134 26 4 289 421 501499291 501499420 1.740000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G354000 chr3D 464331228 464334724 3496 True 6458.000000 6458 100.000000 1 3497 1 chr3D.!!$R6 3496
1 TraesCS3D01G354000 chr3D 464719513 464721073 1560 True 985.500000 1040 89.827500 919 2513 2 chr3D.!!$R8 1594
2 TraesCS3D01G354000 chr3D 464316627 464317195 568 True 676.000000 676 88.246000 2870 3435 1 chr3D.!!$R4 565
3 TraesCS3D01G354000 chr3A 607507941 607510643 2702 True 1053.933333 2560 90.791667 181 2661 3 chr3A.!!$R6 2480
4 TraesCS3D01G354000 chr3A 607487070 607487798 728 True 857.000000 857 87.911000 2703 3454 1 chr3A.!!$R4 751
5 TraesCS3D01G354000 chr3A 608111829 608113461 1632 True 720.500000 824 89.481000 1310 2463 2 chr3A.!!$R7 1153
6 TraesCS3D01G354000 chr3A 607461866 607462396 530 True 623.000000 623 87.845000 2870 3408 1 chr3A.!!$R2 538
7 TraesCS3D01G354000 chr3A 607467391 607467920 529 True 586.000000 586 86.606000 2869 3411 1 chr3A.!!$R3 542
8 TraesCS3D01G354000 chr2B 13154063 13155523 1460 False 1295.000000 1295 82.728000 985 2467 1 chr2B.!!$F1 1482
9 TraesCS3D01G354000 chr2B 13392083 13393569 1486 False 1221.000000 1221 81.610000 986 2506 1 chr2B.!!$F4 1520
10 TraesCS3D01G354000 chr2B 13219743 13220976 1233 False 1085.000000 1085 82.640000 1226 2467 1 chr2B.!!$F3 1241
11 TraesCS3D01G354000 chr2D 9873283 9874761 1478 False 1245.000000 1245 82.055000 986 2468 1 chr2D.!!$F1 1482
12 TraesCS3D01G354000 chr2D 570081676 570082540 864 False 396.000000 396 75.333000 1023 1917 1 chr2D.!!$F2 894
13 TraesCS3D01G354000 chr3B 618007517 618008792 1275 True 818.500000 1197 90.104500 918 2526 2 chr3B.!!$R5 1608
14 TraesCS3D01G354000 chr3B 618002606 618003176 570 True 665.000000 665 87.646000 2904 3496 1 chr3B.!!$R4 592
15 TraesCS3D01G354000 chr3B 617887100 617887624 524 True 664.000000 664 89.319000 2870 3411 1 chr3B.!!$R1 541
16 TraesCS3D01G354000 chr2A 9124544 9125540 996 False 972.000000 972 84.300000 1478 2474 1 chr2A.!!$F1 996
17 TraesCS3D01G354000 chr1A 456243412 456244853 1441 False 782.000000 782 77.068000 1023 2473 1 chr1A.!!$F2 1450
18 TraesCS3D01G354000 chr4A 626953150 626954578 1428 True 667.000000 667 75.778000 1023 2463 1 chr4A.!!$R1 1440
19 TraesCS3D01G354000 chr5D 542106127 542107582 1455 False 617.000000 617 75.017000 996 2463 1 chr5D.!!$F3 1467

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.028374 AACGCGTTTTTCCTTCCGTG 59.972 50.0 20.79 0.00 36.91 4.94 F
123 124 0.097150 GATTTGTTTCCGCGAGAGGC 59.903 55.0 8.23 0.85 38.69 4.70 F
246 247 0.108615 AGTCGTGCCTCTCGGAAATG 60.109 55.0 0.00 0.00 0.00 2.32 F
249 250 0.391130 CGTGCCTCTCGGAAATGGAA 60.391 55.0 0.00 0.00 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1623 1933 1.473257 GCGTGGATGAGCTGGAACATA 60.473 52.381 0.00 0.0 38.20 2.29 R
2004 2786 1.592400 CTGGCGTAGACGGGTCAGAA 61.592 60.000 3.97 0.0 41.59 3.02 R
2211 3012 1.367840 GAGCACCTCAACCACGAGT 59.632 57.895 0.00 0.0 0.00 4.18 R
2564 3382 0.684479 ACACTGCCGCTCCAGATAGA 60.684 55.000 7.38 0.0 36.67 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.966215 TTTTTCTGCCGCGAGAGG 58.034 55.556 8.23 0.00 0.00 3.69
42 43 3.869272 CCGCGAGAGGCATGTTGC 61.869 66.667 8.23 0.00 43.84 4.17
43 44 2.816958 CGCGAGAGGCATGTTGCT 60.817 61.111 0.00 0.00 44.28 3.91
44 45 2.393768 CGCGAGAGGCATGTTGCTT 61.394 57.895 0.00 0.00 44.28 3.91
49 50 1.503542 GAGGCATGTTGCTTCCACG 59.496 57.895 0.51 0.00 42.78 4.94
50 51 0.955428 GAGGCATGTTGCTTCCACGA 60.955 55.000 0.51 0.00 42.78 4.35
51 52 0.957395 AGGCATGTTGCTTCCACGAG 60.957 55.000 0.00 0.00 44.28 4.18
52 53 1.237285 GGCATGTTGCTTCCACGAGT 61.237 55.000 0.00 0.00 44.28 4.18
53 54 0.166814 GCATGTTGCTTCCACGAGTC 59.833 55.000 0.00 0.00 40.96 3.36
54 55 0.439985 CATGTTGCTTCCACGAGTCG 59.560 55.000 11.85 11.85 0.00 4.18
55 56 0.033504 ATGTTGCTTCCACGAGTCGT 59.966 50.000 13.56 13.56 42.36 4.34
64 65 3.759544 ACGAGTCGTGCCTCTCAA 58.240 55.556 19.16 0.00 39.18 3.02
65 66 2.038690 ACGAGTCGTGCCTCTCAAA 58.961 52.632 19.16 0.00 39.18 2.69
66 67 0.387929 ACGAGTCGTGCCTCTCAAAA 59.612 50.000 19.16 0.00 39.18 2.44
67 68 1.202486 ACGAGTCGTGCCTCTCAAAAA 60.202 47.619 19.16 0.00 39.18 1.94
68 69 1.192534 CGAGTCGTGCCTCTCAAAAAC 59.807 52.381 3.82 0.00 0.00 2.43
69 70 1.192534 GAGTCGTGCCTCTCAAAAACG 59.807 52.381 0.00 0.00 35.64 3.60
70 71 0.234884 GTCGTGCCTCTCAAAAACGG 59.765 55.000 0.00 0.00 35.08 4.44
71 72 0.105224 TCGTGCCTCTCAAAAACGGA 59.895 50.000 0.00 0.00 35.08 4.69
72 73 0.941542 CGTGCCTCTCAAAAACGGAA 59.058 50.000 0.00 0.00 0.00 4.30
73 74 1.332375 CGTGCCTCTCAAAAACGGAAA 59.668 47.619 0.00 0.00 0.00 3.13
74 75 2.223386 CGTGCCTCTCAAAAACGGAAAA 60.223 45.455 0.00 0.00 0.00 2.29
75 76 3.732471 CGTGCCTCTCAAAAACGGAAAAA 60.732 43.478 0.00 0.00 0.00 1.94
92 93 1.830086 AAAACGCGTTTTTCCTTCCG 58.170 45.000 36.93 0.00 39.52 4.30
93 94 0.734309 AAACGCGTTTTTCCTTCCGT 59.266 45.000 30.36 5.48 0.00 4.69
94 95 0.028374 AACGCGTTTTTCCTTCCGTG 59.972 50.000 20.79 0.00 36.91 4.94
95 96 0.810823 ACGCGTTTTTCCTTCCGTGA 60.811 50.000 5.58 0.00 35.06 4.35
96 97 0.110823 CGCGTTTTTCCTTCCGTGAG 60.111 55.000 0.00 0.00 32.94 3.51
97 98 1.223187 GCGTTTTTCCTTCCGTGAGA 58.777 50.000 0.00 0.00 0.00 3.27
98 99 1.600485 GCGTTTTTCCTTCCGTGAGAA 59.400 47.619 0.00 0.00 0.00 2.87
105 106 3.894257 CTTCCGTGAGAAGCACTGA 57.106 52.632 0.00 0.00 45.38 3.41
106 107 2.376808 CTTCCGTGAGAAGCACTGAT 57.623 50.000 0.00 0.00 45.38 2.90
107 108 2.693069 CTTCCGTGAGAAGCACTGATT 58.307 47.619 0.00 0.00 45.38 2.57
108 109 2.839486 TCCGTGAGAAGCACTGATTT 57.161 45.000 0.00 0.00 45.49 2.17
109 110 2.416747 TCCGTGAGAAGCACTGATTTG 58.583 47.619 0.00 0.00 45.49 2.32
110 111 2.146342 CCGTGAGAAGCACTGATTTGT 58.854 47.619 0.00 0.00 45.49 2.83
111 112 2.549754 CCGTGAGAAGCACTGATTTGTT 59.450 45.455 0.00 0.00 45.49 2.83
112 113 3.003689 CCGTGAGAAGCACTGATTTGTTT 59.996 43.478 0.00 0.00 45.49 2.83
113 114 4.214437 CGTGAGAAGCACTGATTTGTTTC 58.786 43.478 0.00 0.00 45.49 2.78
114 115 4.540824 GTGAGAAGCACTGATTTGTTTCC 58.459 43.478 0.00 0.00 44.27 3.13
115 116 3.250762 TGAGAAGCACTGATTTGTTTCCG 59.749 43.478 0.00 0.00 37.41 4.30
116 117 2.030805 AGAAGCACTGATTTGTTTCCGC 60.031 45.455 0.00 0.00 37.41 5.54
117 118 0.238289 AGCACTGATTTGTTTCCGCG 59.762 50.000 0.00 0.00 0.00 6.46
118 119 0.237235 GCACTGATTTGTTTCCGCGA 59.763 50.000 8.23 0.00 0.00 5.87
119 120 1.725931 GCACTGATTTGTTTCCGCGAG 60.726 52.381 8.23 0.00 0.00 5.03
120 121 1.798223 CACTGATTTGTTTCCGCGAGA 59.202 47.619 8.23 0.00 0.00 4.04
121 122 2.069273 ACTGATTTGTTTCCGCGAGAG 58.931 47.619 8.23 0.00 0.00 3.20
122 123 1.394917 CTGATTTGTTTCCGCGAGAGG 59.605 52.381 8.23 0.00 0.00 3.69
123 124 0.097150 GATTTGTTTCCGCGAGAGGC 59.903 55.000 8.23 0.85 38.69 4.70
124 125 0.605319 ATTTGTTTCCGCGAGAGGCA 60.605 50.000 8.23 3.54 43.84 4.75
125 126 1.503818 TTTGTTTCCGCGAGAGGCAC 61.504 55.000 8.23 2.54 43.84 5.01
126 127 2.357034 GTTTCCGCGAGAGGCACA 60.357 61.111 8.23 0.00 43.84 4.57
127 128 1.959226 GTTTCCGCGAGAGGCACAA 60.959 57.895 8.23 0.00 43.84 3.33
128 129 1.003839 TTTCCGCGAGAGGCACAAT 60.004 52.632 8.23 0.00 43.84 2.71
129 130 1.019278 TTTCCGCGAGAGGCACAATC 61.019 55.000 8.23 0.00 43.84 2.67
130 131 2.852495 TTCCGCGAGAGGCACAATCC 62.852 60.000 8.23 0.00 43.84 3.01
131 132 2.185350 CGCGAGAGGCACAATCCT 59.815 61.111 0.00 0.00 43.84 3.24
132 133 2.169789 CGCGAGAGGCACAATCCTG 61.170 63.158 0.00 0.00 43.84 3.86
133 134 1.078848 GCGAGAGGCACAATCCTGT 60.079 57.895 0.00 0.00 42.87 4.00
134 135 1.086634 GCGAGAGGCACAATCCTGTC 61.087 60.000 0.00 0.00 41.62 3.51
135 136 3.056628 GAGAGGCACAATCCTGTCG 57.943 57.895 0.00 0.00 36.89 4.35
136 137 0.247736 GAGAGGCACAATCCTGTCGT 59.752 55.000 0.00 0.00 36.89 4.34
137 138 0.247736 AGAGGCACAATCCTGTCGTC 59.752 55.000 0.00 0.00 36.38 4.20
138 139 1.078759 GAGGCACAATCCTGTCGTCG 61.079 60.000 0.00 0.00 36.38 5.12
139 140 2.740714 GGCACAATCCTGTCGTCGC 61.741 63.158 0.00 0.00 31.64 5.19
140 141 2.027073 GCACAATCCTGTCGTCGCA 61.027 57.895 0.00 0.00 31.64 5.10
141 142 1.565156 GCACAATCCTGTCGTCGCAA 61.565 55.000 0.00 0.00 31.64 4.85
142 143 0.865111 CACAATCCTGTCGTCGCAAA 59.135 50.000 0.00 0.00 31.64 3.68
143 144 1.464608 CACAATCCTGTCGTCGCAAAT 59.535 47.619 0.00 0.00 31.64 2.32
144 145 1.464608 ACAATCCTGTCGTCGCAAATG 59.535 47.619 0.00 0.00 0.00 2.32
145 146 1.731709 CAATCCTGTCGTCGCAAATGA 59.268 47.619 0.00 0.00 0.00 2.57
146 147 2.093306 ATCCTGTCGTCGCAAATGAA 57.907 45.000 0.00 0.00 0.00 2.57
147 148 1.872388 TCCTGTCGTCGCAAATGAAA 58.128 45.000 0.00 0.00 0.00 2.69
148 149 2.214347 TCCTGTCGTCGCAAATGAAAA 58.786 42.857 0.00 0.00 0.00 2.29
149 150 2.614520 TCCTGTCGTCGCAAATGAAAAA 59.385 40.909 0.00 0.00 0.00 1.94
173 174 7.485418 AAAACACGTTTTCTTTTGTTTTCCT 57.515 28.000 2.06 0.00 44.82 3.36
174 175 7.485418 AAACACGTTTTCTTTTGTTTTCCTT 57.515 28.000 0.00 0.00 38.69 3.36
175 176 6.699895 ACACGTTTTCTTTTGTTTTCCTTC 57.300 33.333 0.00 0.00 0.00 3.46
176 177 6.217294 ACACGTTTTCTTTTGTTTTCCTTCA 58.783 32.000 0.00 0.00 0.00 3.02
177 178 6.702282 ACACGTTTTCTTTTGTTTTCCTTCAA 59.298 30.769 0.00 0.00 0.00 2.69
178 179 7.007117 CACGTTTTCTTTTGTTTTCCTTCAAC 58.993 34.615 0.00 0.00 0.00 3.18
179 180 6.129035 ACGTTTTCTTTTGTTTTCCTTCAACG 60.129 34.615 0.00 0.00 38.40 4.10
180 181 6.088350 CGTTTTCTTTTGTTTTCCTTCAACGA 59.912 34.615 0.00 0.00 35.33 3.85
181 182 7.445040 GTTTTCTTTTGTTTTCCTTCAACGAG 58.555 34.615 0.00 0.00 0.00 4.18
182 183 6.503589 TTCTTTTGTTTTCCTTCAACGAGA 57.496 33.333 0.00 0.00 0.00 4.04
183 184 6.119144 TCTTTTGTTTTCCTTCAACGAGAG 57.881 37.500 0.00 0.00 0.00 3.20
184 185 4.893424 TTTGTTTTCCTTCAACGAGAGG 57.107 40.909 0.00 0.00 0.00 3.69
185 186 2.218603 TGTTTTCCTTCAACGAGAGGC 58.781 47.619 0.00 0.00 0.00 4.70
186 187 2.218603 GTTTTCCTTCAACGAGAGGCA 58.781 47.619 0.00 0.00 0.00 4.75
187 188 1.878953 TTTCCTTCAACGAGAGGCAC 58.121 50.000 0.00 0.00 0.00 5.01
227 228 1.899437 AATCCTTCCGCGAGAGGCAA 61.899 55.000 19.15 7.10 43.84 4.52
228 229 2.303549 ATCCTTCCGCGAGAGGCAAG 62.304 60.000 19.15 6.82 43.84 4.01
230 231 1.807573 CTTCCGCGAGAGGCAAGTC 60.808 63.158 8.23 0.00 43.84 3.01
231 232 3.626680 TTCCGCGAGAGGCAAGTCG 62.627 63.158 8.23 0.00 43.84 4.18
233 234 3.175240 CGCGAGAGGCAAGTCGTG 61.175 66.667 0.00 4.15 43.84 4.35
242 243 2.962569 CAAGTCGTGCCTCTCGGA 59.037 61.111 0.00 0.00 0.00 4.55
243 244 1.289066 CAAGTCGTGCCTCTCGGAA 59.711 57.895 0.00 0.00 0.00 4.30
244 245 0.319555 CAAGTCGTGCCTCTCGGAAA 60.320 55.000 0.00 0.00 0.00 3.13
245 246 0.608640 AAGTCGTGCCTCTCGGAAAT 59.391 50.000 0.00 0.00 0.00 2.17
246 247 0.108615 AGTCGTGCCTCTCGGAAATG 60.109 55.000 0.00 0.00 0.00 2.32
247 248 1.084370 GTCGTGCCTCTCGGAAATGG 61.084 60.000 0.00 0.00 0.00 3.16
248 249 1.218047 CGTGCCTCTCGGAAATGGA 59.782 57.895 0.00 0.00 0.00 3.41
249 250 0.391130 CGTGCCTCTCGGAAATGGAA 60.391 55.000 0.00 0.00 0.00 3.53
250 251 1.821216 GTGCCTCTCGGAAATGGAAA 58.179 50.000 0.00 0.00 0.00 3.13
251 252 1.740025 GTGCCTCTCGGAAATGGAAAG 59.260 52.381 0.00 0.00 0.00 2.62
252 253 1.628340 TGCCTCTCGGAAATGGAAAGA 59.372 47.619 0.00 0.00 0.00 2.52
253 254 2.039746 TGCCTCTCGGAAATGGAAAGAA 59.960 45.455 0.00 0.00 0.00 2.52
254 255 3.081804 GCCTCTCGGAAATGGAAAGAAA 58.918 45.455 0.00 0.00 0.00 2.52
255 256 3.506067 GCCTCTCGGAAATGGAAAGAAAA 59.494 43.478 0.00 0.00 0.00 2.29
256 257 4.616143 GCCTCTCGGAAATGGAAAGAAAAC 60.616 45.833 0.00 0.00 0.00 2.43
257 258 4.518970 CCTCTCGGAAATGGAAAGAAAACA 59.481 41.667 0.00 0.00 0.00 2.83
258 259 5.432885 TCTCGGAAATGGAAAGAAAACAC 57.567 39.130 0.00 0.00 0.00 3.32
259 260 4.024387 TCTCGGAAATGGAAAGAAAACACG 60.024 41.667 0.00 0.00 0.00 4.49
260 261 3.628487 TCGGAAATGGAAAGAAAACACGT 59.372 39.130 0.00 0.00 0.00 4.49
261 262 4.096682 TCGGAAATGGAAAGAAAACACGTT 59.903 37.500 0.00 0.00 0.00 3.99
262 263 4.801516 CGGAAATGGAAAGAAAACACGTTT 59.198 37.500 0.00 0.00 0.00 3.60
263 264 5.289917 CGGAAATGGAAAGAAAACACGTTTT 59.710 36.000 7.59 7.59 44.59 2.43
300 301 2.802667 CGCGAGAGGCACGGATTTG 61.803 63.158 0.00 0.00 43.84 2.32
318 319 2.317609 GCTTTCGCGAGAGGCACAA 61.318 57.895 25.84 7.82 43.84 3.33
324 325 1.738099 GCGAGAGGCACAATCGTGT 60.738 57.895 0.00 0.00 45.50 4.49
349 350 2.095384 GGAAACGAAGAAAAACGCGT 57.905 45.000 5.58 5.58 36.39 6.01
351 352 3.606422 GGAAACGAAGAAAAACGCGTTA 58.394 40.909 26.87 0.00 40.91 3.18
352 353 4.213674 GGAAACGAAGAAAAACGCGTTAT 58.786 39.130 26.87 17.48 40.91 1.89
353 354 4.316513 GGAAACGAAGAAAAACGCGTTATC 59.683 41.667 26.87 24.47 40.91 1.75
354 355 4.720530 AACGAAGAAAAACGCGTTATCT 57.279 36.364 26.87 26.21 40.38 1.98
356 357 5.086888 ACGAAGAAAAACGCGTTATCTTT 57.913 34.783 34.31 27.30 32.52 2.52
397 399 4.943705 ACACATTTATTTCTCGTGAGGCAT 59.056 37.500 0.00 0.00 0.00 4.40
408 410 1.666888 CGTGAGGCATGGTTTTGCTTC 60.667 52.381 0.00 2.03 45.88 3.86
410 412 2.819608 GTGAGGCATGGTTTTGCTTCTA 59.180 45.455 9.48 0.00 45.87 2.10
498 500 9.646427 ATGAGATCTAGTTTTAAATATCTCGGC 57.354 33.333 0.00 0.00 41.32 5.54
500 502 7.659186 AGATCTAGTTTTAAATATCTCGGCGT 58.341 34.615 6.85 0.00 0.00 5.68
504 506 4.809426 AGTTTTAAATATCTCGGCGTGAGG 59.191 41.667 17.06 2.13 45.32 3.86
514 516 0.738412 CGGCGTGAGGAATTAACGGT 60.738 55.000 0.00 0.00 37.77 4.83
515 517 1.469595 CGGCGTGAGGAATTAACGGTA 60.470 52.381 0.00 0.00 37.77 4.02
606 613 3.485947 TCAAATTATGACAAGTGGCGC 57.514 42.857 0.00 0.00 31.50 6.53
613 620 1.246649 TGACAAGTGGCGCAAATGAT 58.753 45.000 10.83 0.00 0.00 2.45
649 656 1.333931 TCGATTTCGCGAGACATAGCT 59.666 47.619 9.59 0.00 41.84 3.32
666 673 6.213677 ACATAGCTCTCGCGATATTTTACAA 58.786 36.000 10.36 0.00 42.32 2.41
697 704 1.081708 CCAAAACGGCGTACCAAGC 60.082 57.895 15.20 0.00 34.57 4.01
736 744 1.557099 TCGTGGTATTCTGCACTCCT 58.443 50.000 0.00 0.00 0.00 3.69
755 763 2.678836 CCTGAGTCGTACACTAGGACAG 59.321 54.545 0.00 0.00 43.86 3.51
756 764 2.082231 TGAGTCGTACACTAGGACAGC 58.918 52.381 0.00 0.00 43.86 4.40
764 772 1.169577 CACTAGGACAGCTGTCGACT 58.830 55.000 34.28 28.50 45.65 4.18
767 775 2.748532 ACTAGGACAGCTGTCGACTAAC 59.251 50.000 34.28 21.96 45.65 2.34
776 784 6.398918 ACAGCTGTCGACTAACTGATTTTAT 58.601 36.000 27.90 10.88 32.67 1.40
777 785 7.544622 ACAGCTGTCGACTAACTGATTTTATA 58.455 34.615 27.90 2.04 32.67 0.98
852 1130 5.070313 GGGTACCGTTATACTGTAATTCCCA 59.930 44.000 5.65 0.00 40.86 4.37
879 1157 3.195396 GTGGGTATCCATTTGTGCAATGT 59.805 43.478 0.00 0.00 46.09 2.71
926 1204 1.372872 CGTCTGCGTGGTGATCACA 60.373 57.895 26.47 10.65 46.36 3.58
952 1230 0.884514 GAGCATCCGATCCGATCTCA 59.115 55.000 6.81 0.00 0.00 3.27
953 1231 1.476085 GAGCATCCGATCCGATCTCAT 59.524 52.381 6.81 0.00 0.00 2.90
958 1236 1.819288 TCCGATCCGATCTCATTAGCC 59.181 52.381 6.81 0.00 0.00 3.93
1019 1300 3.497031 GGCGCCAACTAAGGACGC 61.497 66.667 24.80 11.43 46.24 5.19
1173 1454 2.900838 ATCCGCTCCGTCGTCGAT 60.901 61.111 2.98 0.00 39.71 3.59
1250 1543 4.143333 CGACGTTGGGCTCCCGAT 62.143 66.667 0.00 0.00 39.42 4.18
1688 1998 1.927895 CTCTTCAATAGCTTCCGCGT 58.072 50.000 4.92 0.00 42.32 6.01
1980 2290 2.878406 CAAGAACTTCGTGTGGGTCATT 59.122 45.455 0.00 0.00 0.00 2.57
2211 3012 3.551454 CCGACCAGTTCTACAACGAGAAA 60.551 47.826 0.00 0.00 37.20 2.52
2382 3189 3.689002 GAAGGCCAAGGAGCTCGGG 62.689 68.421 5.01 10.34 0.00 5.14
2389 3196 3.036429 AAGGAGCTCGGGGTGATGC 62.036 63.158 7.83 0.00 0.00 3.91
2538 3345 4.448732 CACTCGATGTCACTGTGAATTTGA 59.551 41.667 12.81 10.76 0.00 2.69
2542 3349 5.084055 CGATGTCACTGTGAATTTGATGTG 58.916 41.667 12.81 0.00 0.00 3.21
2543 3350 5.334337 CGATGTCACTGTGAATTTGATGTGT 60.334 40.000 12.81 0.00 0.00 3.72
2544 3351 6.128580 CGATGTCACTGTGAATTTGATGTGTA 60.129 38.462 12.81 0.00 0.00 2.90
2559 3377 9.612066 ATTTGATGTGTATGTGTATGTGTATGA 57.388 29.630 0.00 0.00 0.00 2.15
2598 3423 2.543012 GCAGTGTGCATATGCTGTAGAG 59.457 50.000 27.13 14.02 44.26 2.43
2643 3474 2.630580 TGGGGAAATTTGTTACTGGTGC 59.369 45.455 0.00 0.00 0.00 5.01
2661 3492 1.965219 CCGAAGAACTGGACTCCGT 59.035 57.895 0.00 0.00 0.00 4.69
2662 3493 1.171308 CCGAAGAACTGGACTCCGTA 58.829 55.000 0.00 0.00 0.00 4.02
2663 3494 1.132643 CCGAAGAACTGGACTCCGTAG 59.867 57.143 0.00 0.00 0.00 3.51
2664 3495 1.467713 CGAAGAACTGGACTCCGTAGC 60.468 57.143 0.00 0.00 0.00 3.58
2665 3496 1.544691 GAAGAACTGGACTCCGTAGCA 59.455 52.381 0.00 0.00 0.00 3.49
2666 3497 1.853963 AGAACTGGACTCCGTAGCAT 58.146 50.000 0.00 0.00 0.00 3.79
2667 3498 1.751924 AGAACTGGACTCCGTAGCATC 59.248 52.381 0.00 0.00 0.00 3.91
2668 3499 1.751924 GAACTGGACTCCGTAGCATCT 59.248 52.381 0.00 0.00 0.00 2.90
2669 3500 1.853963 ACTGGACTCCGTAGCATCTT 58.146 50.000 0.00 0.00 0.00 2.40
2670 3501 1.478510 ACTGGACTCCGTAGCATCTTG 59.521 52.381 0.00 0.00 0.00 3.02
2671 3502 1.478510 CTGGACTCCGTAGCATCTTGT 59.521 52.381 0.00 0.00 0.00 3.16
2672 3503 1.899814 TGGACTCCGTAGCATCTTGTT 59.100 47.619 0.00 0.00 0.00 2.83
2673 3504 2.094182 TGGACTCCGTAGCATCTTGTTC 60.094 50.000 0.00 0.00 0.00 3.18
2674 3505 2.166664 GGACTCCGTAGCATCTTGTTCT 59.833 50.000 0.00 0.00 0.00 3.01
2675 3506 3.368531 GGACTCCGTAGCATCTTGTTCTT 60.369 47.826 0.00 0.00 0.00 2.52
2676 3507 3.589988 ACTCCGTAGCATCTTGTTCTTG 58.410 45.455 0.00 0.00 0.00 3.02
2677 3508 2.346803 TCCGTAGCATCTTGTTCTTGC 58.653 47.619 0.00 0.00 36.63 4.01
2678 3509 1.398390 CCGTAGCATCTTGTTCTTGCC 59.602 52.381 0.00 0.00 37.07 4.52
2679 3510 2.076100 CGTAGCATCTTGTTCTTGCCA 58.924 47.619 0.00 0.00 37.07 4.92
2680 3511 2.094894 CGTAGCATCTTGTTCTTGCCAG 59.905 50.000 0.00 0.00 37.07 4.85
2681 3512 2.574006 AGCATCTTGTTCTTGCCAGA 57.426 45.000 0.00 0.00 37.07 3.86
2682 3513 3.083122 AGCATCTTGTTCTTGCCAGAT 57.917 42.857 0.00 0.00 37.07 2.90
2683 3514 2.753452 AGCATCTTGTTCTTGCCAGATG 59.247 45.455 4.02 4.02 37.07 2.90
2684 3515 2.159282 GCATCTTGTTCTTGCCAGATGG 60.159 50.000 9.46 0.00 35.17 3.51
2694 3525 2.202878 CCAGATGGCCGTACACCG 60.203 66.667 0.00 0.00 0.00 4.94
2695 3526 2.577059 CAGATGGCCGTACACCGT 59.423 61.111 0.00 0.00 33.66 4.83
2696 3527 1.669049 CCAGATGGCCGTACACCGTA 61.669 60.000 0.00 0.00 33.66 4.02
2697 3528 0.387929 CAGATGGCCGTACACCGTAT 59.612 55.000 0.00 0.00 33.66 3.06
2698 3529 0.387929 AGATGGCCGTACACCGTATG 59.612 55.000 0.00 0.00 33.66 2.39
2699 3530 0.103572 GATGGCCGTACACCGTATGT 59.896 55.000 0.00 0.00 46.06 2.29
2700 3531 1.337703 GATGGCCGTACACCGTATGTA 59.662 52.381 0.00 0.00 43.19 2.29
2701 3532 1.401761 TGGCCGTACACCGTATGTAT 58.598 50.000 0.00 0.00 45.59 2.29
2757 3588 3.685836 TCGACACGGAGTATGTATGTG 57.314 47.619 0.00 0.00 41.61 3.21
2758 3589 3.011818 TCGACACGGAGTATGTATGTGT 58.988 45.455 0.00 0.00 45.68 3.72
2759 3590 3.441222 TCGACACGGAGTATGTATGTGTT 59.559 43.478 0.00 0.00 43.28 3.32
2780 3611 9.232082 TGTGTTGTTTCAAAAGAATCTTAATCG 57.768 29.630 0.00 0.00 0.00 3.34
2781 3612 9.233232 GTGTTGTTTCAAAAGAATCTTAATCGT 57.767 29.630 0.00 0.00 0.00 3.73
2813 3644 5.426689 TGGTGATCTTAAGCTGTTCTGAT 57.573 39.130 0.00 0.00 0.00 2.90
2849 3680 1.813513 ACAGCATACACACTTGGAGC 58.186 50.000 0.00 0.00 0.00 4.70
2861 3692 2.422479 CACTTGGAGCCACATCATTCAG 59.578 50.000 0.00 0.00 0.00 3.02
2937 3776 2.180131 CTGCTCACGAAAGCTGTGCC 62.180 60.000 13.39 0.00 42.94 5.01
2950 3789 2.416107 CTGTGCCTCCAGCCTCCAAA 62.416 60.000 0.00 0.00 42.71 3.28
2999 3838 2.125952 GCATCAACCTTTGCGGCC 60.126 61.111 0.00 0.00 35.61 6.13
3016 3855 2.100631 CCGTGAAGGTGATGCCGAC 61.101 63.158 0.00 0.00 43.70 4.79
3175 4015 8.575649 TTGAGTAATTGGATTTAGACCTTTCC 57.424 34.615 0.00 0.00 0.00 3.13
3216 4066 6.183360 CCATTTTAGTTATGTGCTGATGCTGA 60.183 38.462 0.00 0.00 40.48 4.26
3217 4067 7.423199 CATTTTAGTTATGTGCTGATGCTGAT 58.577 34.615 0.00 0.00 40.48 2.90
3218 4068 5.996669 TTAGTTATGTGCTGATGCTGATG 57.003 39.130 0.00 0.00 40.48 3.07
3219 4069 3.211865 AGTTATGTGCTGATGCTGATGG 58.788 45.455 0.00 0.00 40.48 3.51
3220 4070 2.947652 GTTATGTGCTGATGCTGATGGT 59.052 45.455 0.00 0.00 40.48 3.55
3221 4071 1.389555 ATGTGCTGATGCTGATGGTG 58.610 50.000 0.00 0.00 40.48 4.17
3239 4095 0.107508 TGATGCTTGGCAGCTAGGAC 60.108 55.000 9.11 0.00 45.80 3.85
3240 4096 2.520307 TGATGCTTGGCAGCTAGGACT 61.520 52.381 9.11 0.00 45.80 3.85
3241 4097 3.219447 TGATGCTTGGCAGCTAGGACTA 61.219 50.000 9.11 0.00 45.80 2.59
3242 4098 3.677002 GCTTGGCAGCTAGGACTAG 57.323 57.895 1.98 1.98 43.51 2.57
3243 4099 0.105778 GCTTGGCAGCTAGGACTAGG 59.894 60.000 8.33 0.00 43.51 3.02
3244 4100 1.781786 CTTGGCAGCTAGGACTAGGA 58.218 55.000 8.33 0.00 33.87 2.94
3359 4215 0.820226 CAGCGGAGGAGTTGATCTGA 59.180 55.000 0.00 0.00 0.00 3.27
3418 4275 1.137404 CTGCATTACAGGCCAACGC 59.863 57.895 5.01 0.00 43.19 4.84
3438 4295 3.374058 CGCTGGTTCATTTAGGAAATCGT 59.626 43.478 0.00 0.00 0.00 3.73
3444 4301 7.335627 TGGTTCATTTAGGAAATCGTCATAGT 58.664 34.615 0.00 0.00 0.00 2.12
3464 4322 7.673926 TCATAGTCATAGTATGGATTGCTGGTA 59.326 37.037 10.26 0.00 33.41 3.25
3468 4326 5.838521 TCATAGTATGGATTGCTGGTAGACA 59.161 40.000 10.26 0.00 0.00 3.41
3469 4327 6.498303 TCATAGTATGGATTGCTGGTAGACAT 59.502 38.462 10.26 0.00 0.00 3.06
3470 4328 4.965814 AGTATGGATTGCTGGTAGACATG 58.034 43.478 0.00 0.00 0.00 3.21
3471 4329 2.715749 TGGATTGCTGGTAGACATGG 57.284 50.000 0.00 0.00 0.00 3.66
3474 4332 2.092968 GGATTGCTGGTAGACATGGTGA 60.093 50.000 0.00 0.00 0.00 4.02
3482 4342 4.641396 TGGTAGACATGGTGAAAGTCAAG 58.359 43.478 0.00 0.00 34.80 3.02
3489 4349 1.142870 TGGTGAAAGTCAAGGGTGGAG 59.857 52.381 0.00 0.00 0.00 3.86
3491 4351 0.110486 TGAAAGTCAAGGGTGGAGCC 59.890 55.000 0.00 0.00 0.00 4.70
3494 4354 4.410400 GTCAAGGGTGGAGCCGGG 62.410 72.222 2.18 0.00 38.44 5.73
3495 4355 4.974438 TCAAGGGTGGAGCCGGGT 62.974 66.667 5.45 5.45 38.44 5.28
3496 4356 3.966543 CAAGGGTGGAGCCGGGTT 61.967 66.667 8.00 0.00 38.44 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.966215 CCTCTCGCGGCAGAAAAA 58.034 55.556 6.13 0.00 0.00 1.94
25 26 3.869272 GCAACATGCCTCTCGCGG 61.869 66.667 6.13 0.00 42.08 6.46
26 27 2.301902 GAAGCAACATGCCTCTCGCG 62.302 60.000 0.00 0.00 46.52 5.87
27 28 1.427020 GAAGCAACATGCCTCTCGC 59.573 57.895 0.00 0.00 46.52 5.03
28 29 0.674581 TGGAAGCAACATGCCTCTCG 60.675 55.000 0.00 0.00 46.52 4.04
29 30 0.807496 GTGGAAGCAACATGCCTCTC 59.193 55.000 0.00 0.00 46.52 3.20
30 31 0.957395 CGTGGAAGCAACATGCCTCT 60.957 55.000 0.00 0.00 46.52 3.69
31 32 0.955428 TCGTGGAAGCAACATGCCTC 60.955 55.000 0.00 0.00 46.52 4.70
32 33 0.957395 CTCGTGGAAGCAACATGCCT 60.957 55.000 0.00 0.00 46.52 4.75
33 34 1.237285 ACTCGTGGAAGCAACATGCC 61.237 55.000 0.00 0.00 46.52 4.40
34 35 0.166814 GACTCGTGGAAGCAACATGC 59.833 55.000 0.00 0.00 45.46 4.06
35 36 0.439985 CGACTCGTGGAAGCAACATG 59.560 55.000 0.00 0.00 0.00 3.21
36 37 0.033504 ACGACTCGTGGAAGCAACAT 59.966 50.000 2.53 0.00 39.18 2.71
37 38 1.440060 ACGACTCGTGGAAGCAACA 59.560 52.632 2.53 0.00 39.18 3.33
38 39 4.338327 ACGACTCGTGGAAGCAAC 57.662 55.556 2.53 0.00 39.18 4.17
47 48 0.387929 TTTTGAGAGGCACGACTCGT 59.612 50.000 0.00 0.00 42.31 4.18
48 49 1.192534 GTTTTTGAGAGGCACGACTCG 59.807 52.381 0.00 0.00 42.31 4.18
49 50 1.192534 CGTTTTTGAGAGGCACGACTC 59.807 52.381 0.00 0.00 37.22 3.36
50 51 1.217882 CGTTTTTGAGAGGCACGACT 58.782 50.000 0.00 0.00 32.51 4.18
51 52 0.234884 CCGTTTTTGAGAGGCACGAC 59.765 55.000 0.00 0.00 32.51 4.34
52 53 0.105224 TCCGTTTTTGAGAGGCACGA 59.895 50.000 0.00 0.00 32.51 4.35
53 54 0.941542 TTCCGTTTTTGAGAGGCACG 59.058 50.000 0.00 0.00 0.00 5.34
54 55 3.430333 TTTTCCGTTTTTGAGAGGCAC 57.570 42.857 0.00 0.00 0.00 5.01
73 74 1.132834 ACGGAAGGAAAAACGCGTTTT 59.867 42.857 36.93 36.93 43.88 2.43
74 75 0.734309 ACGGAAGGAAAAACGCGTTT 59.266 45.000 30.36 30.36 0.00 3.60
75 76 0.028374 CACGGAAGGAAAAACGCGTT 59.972 50.000 20.79 20.79 0.00 4.84
76 77 0.810823 TCACGGAAGGAAAAACGCGT 60.811 50.000 5.58 5.58 0.00 6.01
77 78 0.110823 CTCACGGAAGGAAAAACGCG 60.111 55.000 3.53 3.53 0.00 6.01
78 79 1.223187 TCTCACGGAAGGAAAAACGC 58.777 50.000 0.00 0.00 0.00 4.84
79 80 3.521524 CTTCTCACGGAAGGAAAAACG 57.478 47.619 0.00 0.00 45.55 3.60
80 81 2.616842 TGCTTCTCACGGAAGGAAAAAC 59.383 45.455 7.37 0.00 46.69 2.43
81 82 2.925724 TGCTTCTCACGGAAGGAAAAA 58.074 42.857 7.37 0.00 46.69 1.94
82 83 2.631160 TGCTTCTCACGGAAGGAAAA 57.369 45.000 7.37 0.00 46.69 2.29
92 93 4.540824 GGAAACAAATCAGTGCTTCTCAC 58.459 43.478 0.00 0.00 45.98 3.51
93 94 3.250762 CGGAAACAAATCAGTGCTTCTCA 59.749 43.478 0.00 0.00 0.00 3.27
94 95 3.814945 CGGAAACAAATCAGTGCTTCTC 58.185 45.455 0.00 0.00 0.00 2.87
95 96 2.030805 GCGGAAACAAATCAGTGCTTCT 60.031 45.455 0.00 0.00 0.00 2.85
96 97 2.319472 GCGGAAACAAATCAGTGCTTC 58.681 47.619 0.00 0.00 0.00 3.86
97 98 1.334960 CGCGGAAACAAATCAGTGCTT 60.335 47.619 0.00 0.00 0.00 3.91
98 99 0.238289 CGCGGAAACAAATCAGTGCT 59.762 50.000 0.00 0.00 0.00 4.40
99 100 0.237235 TCGCGGAAACAAATCAGTGC 59.763 50.000 6.13 0.00 0.00 4.40
100 101 1.798223 TCTCGCGGAAACAAATCAGTG 59.202 47.619 6.13 0.00 0.00 3.66
101 102 2.069273 CTCTCGCGGAAACAAATCAGT 58.931 47.619 6.13 0.00 0.00 3.41
102 103 1.394917 CCTCTCGCGGAAACAAATCAG 59.605 52.381 6.13 0.00 0.00 2.90
103 104 1.438651 CCTCTCGCGGAAACAAATCA 58.561 50.000 6.13 0.00 0.00 2.57
104 105 0.097150 GCCTCTCGCGGAAACAAATC 59.903 55.000 6.13 0.00 0.00 2.17
105 106 0.605319 TGCCTCTCGCGGAAACAAAT 60.605 50.000 6.13 0.00 42.08 2.32
106 107 1.227704 TGCCTCTCGCGGAAACAAA 60.228 52.632 6.13 0.00 42.08 2.83
107 108 1.959226 GTGCCTCTCGCGGAAACAA 60.959 57.895 6.13 0.00 42.08 2.83
108 109 2.357034 GTGCCTCTCGCGGAAACA 60.357 61.111 6.13 0.81 42.08 2.83
109 110 1.298859 ATTGTGCCTCTCGCGGAAAC 61.299 55.000 6.13 2.48 42.08 2.78
110 111 1.003839 ATTGTGCCTCTCGCGGAAA 60.004 52.632 6.13 0.00 42.08 3.13
111 112 1.447838 GATTGTGCCTCTCGCGGAA 60.448 57.895 6.13 0.00 42.08 4.30
112 113 2.184322 GATTGTGCCTCTCGCGGA 59.816 61.111 6.13 1.01 42.08 5.54
113 114 2.892425 GGATTGTGCCTCTCGCGG 60.892 66.667 6.13 0.00 42.08 6.46
114 115 2.169789 CAGGATTGTGCCTCTCGCG 61.170 63.158 0.00 0.00 42.08 5.87
115 116 1.078848 ACAGGATTGTGCCTCTCGC 60.079 57.895 0.00 0.00 35.66 5.03
116 117 0.803768 CGACAGGATTGTGCCTCTCG 60.804 60.000 0.00 0.00 39.47 4.04
117 118 0.247736 ACGACAGGATTGTGCCTCTC 59.752 55.000 0.00 0.00 37.76 3.20
118 119 0.247736 GACGACAGGATTGTGCCTCT 59.752 55.000 0.00 0.00 37.76 3.69
119 120 1.078759 CGACGACAGGATTGTGCCTC 61.079 60.000 0.00 0.00 37.76 4.70
120 121 1.079819 CGACGACAGGATTGTGCCT 60.080 57.895 0.00 0.00 37.76 4.75
121 122 2.740714 GCGACGACAGGATTGTGCC 61.741 63.158 0.00 0.00 37.76 5.01
122 123 1.565156 TTGCGACGACAGGATTGTGC 61.565 55.000 0.00 0.00 37.76 4.57
123 124 0.865111 TTTGCGACGACAGGATTGTG 59.135 50.000 0.00 0.00 37.76 3.33
124 125 1.464608 CATTTGCGACGACAGGATTGT 59.535 47.619 0.00 0.00 41.18 2.71
125 126 1.731709 TCATTTGCGACGACAGGATTG 59.268 47.619 0.00 0.00 0.00 2.67
126 127 2.093306 TCATTTGCGACGACAGGATT 57.907 45.000 0.00 0.00 0.00 3.01
127 128 2.093306 TTCATTTGCGACGACAGGAT 57.907 45.000 0.00 0.00 0.00 3.24
128 129 1.872388 TTTCATTTGCGACGACAGGA 58.128 45.000 0.00 0.00 0.00 3.86
129 130 2.679355 TTTTCATTTGCGACGACAGG 57.321 45.000 0.00 0.00 0.00 4.00
150 151 7.224949 TGAAGGAAAACAAAAGAAAACGTGTTT 59.775 29.630 0.00 0.00 44.01 2.83
151 152 6.702282 TGAAGGAAAACAAAAGAAAACGTGTT 59.298 30.769 0.00 0.00 35.77 3.32
152 153 6.217294 TGAAGGAAAACAAAAGAAAACGTGT 58.783 32.000 0.00 0.00 0.00 4.49
153 154 6.698359 TGAAGGAAAACAAAAGAAAACGTG 57.302 33.333 0.00 0.00 0.00 4.49
154 155 6.129035 CGTTGAAGGAAAACAAAAGAAAACGT 60.129 34.615 0.00 0.00 33.00 3.99
155 156 6.088350 TCGTTGAAGGAAAACAAAAGAAAACG 59.912 34.615 0.00 0.00 37.45 3.60
156 157 7.327518 TCTCGTTGAAGGAAAACAAAAGAAAAC 59.672 33.333 0.00 0.00 0.00 2.43
157 158 7.371936 TCTCGTTGAAGGAAAACAAAAGAAAA 58.628 30.769 0.00 0.00 0.00 2.29
158 159 6.915349 TCTCGTTGAAGGAAAACAAAAGAAA 58.085 32.000 0.00 0.00 0.00 2.52
159 160 6.404293 CCTCTCGTTGAAGGAAAACAAAAGAA 60.404 38.462 0.00 0.00 0.00 2.52
160 161 5.065988 CCTCTCGTTGAAGGAAAACAAAAGA 59.934 40.000 0.00 0.00 0.00 2.52
161 162 5.273944 CCTCTCGTTGAAGGAAAACAAAAG 58.726 41.667 0.00 0.00 0.00 2.27
162 163 4.439563 GCCTCTCGTTGAAGGAAAACAAAA 60.440 41.667 0.00 0.00 0.00 2.44
163 164 3.066203 GCCTCTCGTTGAAGGAAAACAAA 59.934 43.478 0.00 0.00 0.00 2.83
164 165 2.616842 GCCTCTCGTTGAAGGAAAACAA 59.383 45.455 0.00 0.00 0.00 2.83
165 166 2.218603 GCCTCTCGTTGAAGGAAAACA 58.781 47.619 0.00 0.00 0.00 2.83
166 167 2.031944 GTGCCTCTCGTTGAAGGAAAAC 60.032 50.000 0.00 0.00 0.00 2.43
167 168 2.218603 GTGCCTCTCGTTGAAGGAAAA 58.781 47.619 0.00 0.00 0.00 2.29
168 169 1.140052 TGTGCCTCTCGTTGAAGGAAA 59.860 47.619 0.00 0.00 0.00 3.13
169 170 0.756294 TGTGCCTCTCGTTGAAGGAA 59.244 50.000 0.00 0.00 0.00 3.36
170 171 0.318441 CTGTGCCTCTCGTTGAAGGA 59.682 55.000 0.00 0.00 0.00 3.36
171 172 0.034059 ACTGTGCCTCTCGTTGAAGG 59.966 55.000 0.00 0.00 0.00 3.46
172 173 1.423395 GACTGTGCCTCTCGTTGAAG 58.577 55.000 0.00 0.00 0.00 3.02
173 174 0.318699 CGACTGTGCCTCTCGTTGAA 60.319 55.000 0.00 0.00 0.00 2.69
174 175 1.285950 CGACTGTGCCTCTCGTTGA 59.714 57.895 0.00 0.00 0.00 3.18
175 176 1.007271 ACGACTGTGCCTCTCGTTG 60.007 57.895 0.00 0.00 37.35 4.10
176 177 1.007271 CACGACTGTGCCTCTCGTT 60.007 57.895 0.00 0.00 38.57 3.85
177 178 2.645567 CACGACTGTGCCTCTCGT 59.354 61.111 0.00 0.00 41.23 4.18
185 186 2.661537 TGCGAAGGCACGACTGTG 60.662 61.111 8.16 0.00 46.21 3.66
235 236 5.452777 GTGTTTTCTTTCCATTTCCGAGAG 58.547 41.667 0.00 0.00 0.00 3.20
236 237 4.024387 CGTGTTTTCTTTCCATTTCCGAGA 60.024 41.667 0.00 0.00 0.00 4.04
237 238 4.219033 CGTGTTTTCTTTCCATTTCCGAG 58.781 43.478 0.00 0.00 0.00 4.63
238 239 3.628487 ACGTGTTTTCTTTCCATTTCCGA 59.372 39.130 0.00 0.00 0.00 4.55
239 240 3.959943 ACGTGTTTTCTTTCCATTTCCG 58.040 40.909 0.00 0.00 0.00 4.30
240 241 6.656314 AAAACGTGTTTTCTTTCCATTTCC 57.344 33.333 4.93 0.00 38.27 3.13
266 267 3.628487 TCTCGCGGAAGGAAAAAGAAAAA 59.372 39.130 6.13 0.00 0.00 1.94
267 268 3.207778 TCTCGCGGAAGGAAAAAGAAAA 58.792 40.909 6.13 0.00 0.00 2.29
268 269 2.806244 CTCTCGCGGAAGGAAAAAGAAA 59.194 45.455 6.13 0.00 0.00 2.52
269 270 2.413837 CTCTCGCGGAAGGAAAAAGAA 58.586 47.619 6.13 0.00 0.00 2.52
270 271 1.337823 CCTCTCGCGGAAGGAAAAAGA 60.338 52.381 19.22 5.18 0.00 2.52
271 272 1.079503 CCTCTCGCGGAAGGAAAAAG 58.920 55.000 19.22 0.77 0.00 2.27
272 273 0.953960 GCCTCTCGCGGAAGGAAAAA 60.954 55.000 25.65 0.00 0.00 1.94
273 274 1.375523 GCCTCTCGCGGAAGGAAAA 60.376 57.895 25.65 0.00 0.00 2.29
274 275 2.264794 GCCTCTCGCGGAAGGAAA 59.735 61.111 25.65 0.00 0.00 3.13
275 276 2.994995 TGCCTCTCGCGGAAGGAA 60.995 61.111 25.65 16.18 42.08 3.36
276 277 3.760035 GTGCCTCTCGCGGAAGGA 61.760 66.667 25.65 11.85 42.08 3.36
324 325 4.143263 GCGTTTTTCTTCGTTTCCGATAGA 60.143 41.667 0.00 0.00 43.80 1.98
327 328 2.660900 CGCGTTTTTCTTCGTTTCCGAT 60.661 45.455 0.00 0.00 43.80 4.18
330 331 2.095384 ACGCGTTTTTCTTCGTTTCC 57.905 45.000 5.58 0.00 0.00 3.13
372 373 4.651994 CCTCACGAGAAATAAATGTGTGC 58.348 43.478 0.00 0.00 32.55 4.57
373 374 4.154015 TGCCTCACGAGAAATAAATGTGTG 59.846 41.667 0.00 0.00 32.55 3.82
383 384 2.270352 AAACCATGCCTCACGAGAAA 57.730 45.000 0.00 0.00 0.00 2.52
397 399 2.870435 GCCTCTCGTAGAAGCAAAACCA 60.870 50.000 0.00 0.00 34.09 3.67
474 476 7.808856 ACGCCGAGATATTTAAAACTAGATCTC 59.191 37.037 0.00 0.21 37.18 2.75
475 477 7.595502 CACGCCGAGATATTTAAAACTAGATCT 59.404 37.037 0.00 0.00 0.00 2.75
479 481 6.144080 CCTCACGCCGAGATATTTAAAACTAG 59.856 42.308 4.08 0.00 45.45 2.57
487 489 3.753294 ATTCCTCACGCCGAGATATTT 57.247 42.857 4.08 0.00 45.45 1.40
490 492 3.549423 CGTTAATTCCTCACGCCGAGATA 60.549 47.826 4.08 0.00 45.45 1.98
497 499 4.666928 TTTTACCGTTAATTCCTCACGC 57.333 40.909 0.00 0.00 32.43 5.34
498 500 5.074791 CGTTTTTACCGTTAATTCCTCACG 58.925 41.667 0.00 0.00 0.00 4.35
500 502 5.062528 ACCGTTTTTACCGTTAATTCCTCA 58.937 37.500 0.00 0.00 0.00 3.86
504 506 7.131565 TCTTGAACCGTTTTTACCGTTAATTC 58.868 34.615 0.00 0.00 0.00 2.17
537 539 9.458374 CAAAATGTTTTATCTCTTAAACCGTGT 57.542 29.630 0.00 0.00 34.21 4.49
538 540 9.672086 TCAAAATGTTTTATCTCTTAAACCGTG 57.328 29.630 0.00 0.00 34.21 4.94
583 585 4.324402 GCGCCACTTGTCATAATTTGAAAG 59.676 41.667 0.00 0.00 35.70 2.62
584 586 4.233789 GCGCCACTTGTCATAATTTGAAA 58.766 39.130 0.00 0.00 35.70 2.69
585 587 3.254411 TGCGCCACTTGTCATAATTTGAA 59.746 39.130 4.18 0.00 35.70 2.69
593 600 1.246649 TCATTTGCGCCACTTGTCAT 58.753 45.000 4.18 0.00 0.00 3.06
594 601 1.246649 ATCATTTGCGCCACTTGTCA 58.753 45.000 4.18 0.00 0.00 3.58
655 662 5.061684 GCGCCCAAAACACTTGTAAAATATC 59.938 40.000 0.00 0.00 0.00 1.63
690 697 3.712907 GTGAGGCCCCGCTTGGTA 61.713 66.667 0.00 0.00 0.00 3.25
708 715 3.548818 GCAGAATACCACGATGAAATGCC 60.549 47.826 0.00 0.00 0.00 4.40
709 716 3.065233 TGCAGAATACCACGATGAAATGC 59.935 43.478 0.00 0.00 0.00 3.56
710 717 4.333649 AGTGCAGAATACCACGATGAAATG 59.666 41.667 0.00 0.00 37.07 2.32
736 744 2.082231 GCTGTCCTAGTGTACGACTCA 58.918 52.381 0.00 0.00 35.96 3.41
755 763 6.475727 TGCTATAAAATCAGTTAGTCGACAGC 59.524 38.462 19.50 12.53 0.00 4.40
756 764 7.702772 AGTGCTATAAAATCAGTTAGTCGACAG 59.297 37.037 19.50 1.79 0.00 3.51
791 799 2.533535 GCGTCAGACTCGAATCAATGAG 59.466 50.000 0.00 0.00 38.21 2.90
792 800 2.094752 TGCGTCAGACTCGAATCAATGA 60.095 45.455 0.00 0.00 0.00 2.57
793 801 2.028523 GTGCGTCAGACTCGAATCAATG 59.971 50.000 0.00 0.00 0.00 2.82
806 1084 0.857287 CCGATGATGATGTGCGTCAG 59.143 55.000 0.54 0.00 45.21 3.51
807 1085 0.175531 ACCGATGATGATGTGCGTCA 59.824 50.000 0.00 0.00 46.01 4.35
834 1112 3.180980 CGCGTGGGAATTACAGTATAACG 59.819 47.826 0.00 0.00 0.00 3.18
835 1113 3.492011 CCGCGTGGGAATTACAGTATAAC 59.508 47.826 7.26 0.00 38.47 1.89
839 1117 0.896923 ACCGCGTGGGAATTACAGTA 59.103 50.000 21.14 0.00 40.75 2.74
840 1118 0.672401 CACCGCGTGGGAATTACAGT 60.672 55.000 21.14 0.00 40.75 3.55
841 1119 2.086510 CACCGCGTGGGAATTACAG 58.913 57.895 21.14 0.00 40.75 2.74
842 1120 4.287580 CACCGCGTGGGAATTACA 57.712 55.556 21.14 0.00 40.75 2.41
852 1130 0.746563 CAAATGGATACCCACCGCGT 60.747 55.000 4.92 0.00 46.98 6.01
898 1176 1.659098 CCACGCAGACGATTACTTTCC 59.341 52.381 0.00 0.00 43.93 3.13
904 1182 1.474879 TGATCACCACGCAGACGATTA 59.525 47.619 0.00 0.00 43.93 1.75
926 1204 1.299468 GATCGGATGCTCGCGAGTT 60.299 57.895 34.46 23.42 0.00 3.01
958 1236 1.669115 CAGGTGAGCCGTTCCTGTG 60.669 63.158 0.00 0.00 42.42 3.66
1257 1550 3.547787 AAGGTCCCTCCCGCTCTGT 62.548 63.158 0.00 0.00 36.75 3.41
1602 1906 3.672293 CACTCATGTGGCCGCTTT 58.328 55.556 18.96 1.74 40.33 3.51
1623 1933 1.473257 GCGTGGATGAGCTGGAACATA 60.473 52.381 0.00 0.00 38.20 2.29
1713 2023 1.809619 GAGCTGCGTGGCACGATAA 60.810 57.895 40.94 24.16 46.05 1.75
1991 2301 3.197790 CAGAAGATGCGGCGGTGG 61.198 66.667 9.78 0.00 0.00 4.61
2004 2786 1.592400 CTGGCGTAGACGGGTCAGAA 61.592 60.000 3.97 0.00 41.59 3.02
2211 3012 1.367840 GAGCACCTCAACCACGAGT 59.632 57.895 0.00 0.00 0.00 4.18
2559 3377 3.023119 CTGCCGCTCCAGATAGAGATAT 58.977 50.000 0.00 0.00 35.82 1.63
2564 3382 0.684479 ACACTGCCGCTCCAGATAGA 60.684 55.000 7.38 0.00 36.67 1.98
2588 3413 1.279496 TTCAGGTGCCTCTACAGCAT 58.721 50.000 0.00 0.00 43.29 3.79
2596 3421 3.319122 ACTCAAACAATTTCAGGTGCCTC 59.681 43.478 0.00 0.00 0.00 4.70
2598 3423 3.733443 ACTCAAACAATTTCAGGTGCC 57.267 42.857 0.00 0.00 0.00 5.01
2643 3474 1.132643 CTACGGAGTCCAGTTCTTCGG 59.867 57.143 10.49 0.00 43.93 4.30
2661 3492 3.701205 TCTGGCAAGAACAAGATGCTA 57.299 42.857 0.00 0.00 39.94 3.49
2662 3493 2.574006 TCTGGCAAGAACAAGATGCT 57.426 45.000 0.00 0.00 39.94 3.79
2663 3494 2.159282 CCATCTGGCAAGAACAAGATGC 60.159 50.000 0.00 0.00 35.59 3.91
2664 3495 3.777465 CCATCTGGCAAGAACAAGATG 57.223 47.619 0.00 2.49 35.59 2.90
2677 3508 2.202878 CGGTGTACGGCCATCTGG 60.203 66.667 2.24 0.00 39.42 3.86
2686 3517 6.309436 CACCAGTATATACATACGGTGTACG 58.691 44.000 22.83 8.69 45.59 3.67
2691 3522 6.321945 TGTTGACACCAGTATATACATACGGT 59.678 38.462 15.18 11.82 41.70 4.83
2692 3523 6.741109 TGTTGACACCAGTATATACATACGG 58.259 40.000 15.18 11.25 41.70 4.02
2693 3524 7.096189 GCTTGTTGACACCAGTATATACATACG 60.096 40.741 15.18 3.69 41.70 3.06
2694 3525 7.709182 TGCTTGTTGACACCAGTATATACATAC 59.291 37.037 15.18 1.71 37.83 2.39
2695 3526 7.787028 TGCTTGTTGACACCAGTATATACATA 58.213 34.615 15.18 0.00 0.00 2.29
2696 3527 6.649155 TGCTTGTTGACACCAGTATATACAT 58.351 36.000 15.18 0.00 0.00 2.29
2697 3528 6.043854 TGCTTGTTGACACCAGTATATACA 57.956 37.500 15.18 0.00 0.00 2.29
2698 3529 7.279981 TGAATGCTTGTTGACACCAGTATATAC 59.720 37.037 4.60 4.60 0.00 1.47
2699 3530 7.334858 TGAATGCTTGTTGACACCAGTATATA 58.665 34.615 0.00 0.00 0.00 0.86
2700 3531 6.179756 TGAATGCTTGTTGACACCAGTATAT 58.820 36.000 0.00 0.00 0.00 0.86
2701 3532 5.555966 TGAATGCTTGTTGACACCAGTATA 58.444 37.500 0.00 0.00 0.00 1.47
2779 3610 6.464834 GCTTAAGATCACCAAATTCGTTTACG 59.535 38.462 6.67 0.00 41.45 3.18
2780 3611 7.481798 CAGCTTAAGATCACCAAATTCGTTTAC 59.518 37.037 6.67 0.00 0.00 2.01
2781 3612 7.174253 ACAGCTTAAGATCACCAAATTCGTTTA 59.826 33.333 6.67 0.00 0.00 2.01
2782 3613 6.016276 ACAGCTTAAGATCACCAAATTCGTTT 60.016 34.615 6.67 0.00 0.00 3.60
2783 3614 5.473504 ACAGCTTAAGATCACCAAATTCGTT 59.526 36.000 6.67 0.00 0.00 3.85
2784 3615 5.003804 ACAGCTTAAGATCACCAAATTCGT 58.996 37.500 6.67 0.00 0.00 3.85
2785 3616 5.551760 ACAGCTTAAGATCACCAAATTCG 57.448 39.130 6.67 0.00 0.00 3.34
2786 3617 7.025963 CAGAACAGCTTAAGATCACCAAATTC 58.974 38.462 6.67 0.00 0.00 2.17
2787 3618 6.716628 TCAGAACAGCTTAAGATCACCAAATT 59.283 34.615 6.67 0.00 0.00 1.82
2788 3619 6.240894 TCAGAACAGCTTAAGATCACCAAAT 58.759 36.000 6.67 0.00 0.00 2.32
2789 3620 5.620206 TCAGAACAGCTTAAGATCACCAAA 58.380 37.500 6.67 0.00 0.00 3.28
2790 3621 5.227569 TCAGAACAGCTTAAGATCACCAA 57.772 39.130 6.67 0.00 0.00 3.67
2791 3622 4.890158 TCAGAACAGCTTAAGATCACCA 57.110 40.909 6.67 0.00 0.00 4.17
2849 3680 3.144506 GGCCTATGACTGAATGATGTGG 58.855 50.000 0.00 0.00 0.00 4.17
2861 3692 2.017049 GTGTTGGATGTGGCCTATGAC 58.983 52.381 3.32 0.00 0.00 3.06
2937 3776 1.239968 GCACAGTTTGGAGGCTGGAG 61.240 60.000 0.00 0.00 37.07 3.86
2950 3789 1.040646 TGAAGAAGACGGAGCACAGT 58.959 50.000 0.00 0.00 0.00 3.55
2999 3838 0.670546 AAGTCGGCATCACCTTCACG 60.671 55.000 0.00 0.00 35.61 4.35
3016 3855 1.278238 GTACCACGGCGAGATCAAAG 58.722 55.000 16.62 0.00 0.00 2.77
3152 3992 8.809468 AAGGAAAGGTCTAAATCCAATTACTC 57.191 34.615 0.00 0.00 34.30 2.59
3165 4005 9.614792 GCAGATTAGATAAAAAGGAAAGGTCTA 57.385 33.333 0.00 0.00 0.00 2.59
3181 4024 8.571336 GCACATAACTAAAATGGCAGATTAGAT 58.429 33.333 21.86 15.39 32.34 1.98
3183 4026 7.859377 CAGCACATAACTAAAATGGCAGATTAG 59.141 37.037 16.28 16.28 33.79 1.73
3188 4031 5.565592 TCAGCACATAACTAAAATGGCAG 57.434 39.130 0.00 0.00 0.00 4.85
3204 4052 1.333931 CATCACCATCAGCATCAGCAC 59.666 52.381 0.00 0.00 45.49 4.40
3239 4095 5.184711 ACGTGAGTAAACTCCTACTCCTAG 58.815 45.833 7.63 3.24 44.89 3.02
3240 4096 5.171339 ACGTGAGTAAACTCCTACTCCTA 57.829 43.478 7.63 0.00 44.89 2.94
3241 4097 4.031636 ACGTGAGTAAACTCCTACTCCT 57.968 45.455 7.63 0.00 44.89 3.69
3359 4215 1.210967 TGGAACGAGGTGTTGAGGTTT 59.789 47.619 0.00 0.00 42.09 3.27
3418 4275 6.683974 ATGACGATTTCCTAAATGAACCAG 57.316 37.500 0.00 0.00 0.00 4.00
3438 4295 6.498303 ACCAGCAATCCATACTATGACTATGA 59.502 38.462 0.00 0.00 0.00 2.15
3444 4301 5.838521 TGTCTACCAGCAATCCATACTATGA 59.161 40.000 0.00 0.00 0.00 2.15
3464 4322 2.443255 ACCCTTGACTTTCACCATGTCT 59.557 45.455 0.00 0.00 31.94 3.41
3468 4326 1.780309 TCCACCCTTGACTTTCACCAT 59.220 47.619 0.00 0.00 0.00 3.55
3469 4327 1.142870 CTCCACCCTTGACTTTCACCA 59.857 52.381 0.00 0.00 0.00 4.17
3470 4328 1.897560 CTCCACCCTTGACTTTCACC 58.102 55.000 0.00 0.00 0.00 4.02
3471 4329 1.239347 GCTCCACCCTTGACTTTCAC 58.761 55.000 0.00 0.00 0.00 3.18
3474 4332 1.073199 CGGCTCCACCCTTGACTTT 59.927 57.895 0.00 0.00 33.26 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.