Multiple sequence alignment - TraesCS3D01G353800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G353800 chr3D 100.000 2934 0 0 1 2934 464322786 464325719 0.000000e+00 5419.0
1 TraesCS3D01G353800 chr3D 85.303 973 90 27 831 1766 464316120 464317076 0.000000e+00 955.0
2 TraesCS3D01G353800 chr3D 78.993 1152 124 47 1854 2934 464317075 464318179 0.000000e+00 678.0
3 TraesCS3D01G353800 chr3D 79.779 816 96 49 999 1766 464330942 464331736 2.000000e-146 529.0
4 TraesCS3D01G353800 chr3D 89.735 302 28 3 1 299 433435286 433435587 1.650000e-102 383.0
5 TraesCS3D01G353800 chr3D 85.769 260 23 8 464 712 464315668 464315924 2.240000e-66 263.0
6 TraesCS3D01G353800 chr3D 89.333 150 16 0 1358 1507 464310955 464311104 3.860000e-44 189.0
7 TraesCS3D01G353800 chr3D 86.335 161 12 6 1104 1254 464310630 464310790 1.810000e-37 167.0
8 TraesCS3D01G353800 chr3D 76.849 311 58 12 1616 1918 464311343 464311647 2.340000e-36 163.0
9 TraesCS3D01G353800 chr3D 96.610 59 1 1 746 804 464316002 464316059 2.410000e-16 97.1
10 TraesCS3D01G353800 chr3D 96.970 33 1 0 772 804 464330653 464330685 4.080000e-04 56.5
11 TraesCS3D01G353800 chr3B 87.117 978 78 28 812 1766 617886553 617887505 0.000000e+00 1064.0
12 TraesCS3D01G353800 chr3B 85.567 1067 82 15 1894 2934 617994078 617995098 0.000000e+00 1051.0
13 TraesCS3D01G353800 chr3B 84.396 1019 77 24 329 1286 617987492 617988489 0.000000e+00 926.0
14 TraesCS3D01G353800 chr3B 89.185 601 46 13 1312 1897 617988487 617989083 0.000000e+00 732.0
15 TraesCS3D01G353800 chr3B 81.242 789 97 36 1000 1766 618002332 618003091 9.060000e-165 590.0
16 TraesCS3D01G353800 chr3B 82.974 464 48 12 1854 2306 617887504 617887947 9.860000e-105 390.0
17 TraesCS3D01G353800 chr3B 86.477 281 37 1 2645 2925 617898055 617898334 1.020000e-79 307.0
18 TraesCS3D01G353800 chr3B 87.124 233 22 4 465 690 617886097 617886328 1.040000e-64 257.0
19 TraesCS3D01G353800 chr3A 85.802 979 81 29 812 1766 607466856 607467800 0.000000e+00 985.0
20 TraesCS3D01G353800 chr3A 81.358 810 116 20 966 1766 607486740 607487523 6.900000e-176 627.0
21 TraesCS3D01G353800 chr3A 89.904 416 33 4 1356 1766 607461866 607462277 7.200000e-146 527.0
22 TraesCS3D01G353800 chr3A 86.266 466 41 9 907 1358 607461270 607461726 4.400000e-133 484.0
23 TraesCS3D01G353800 chr3A 84.286 490 45 12 1854 2331 607462276 607462745 1.600000e-122 449.0
24 TraesCS3D01G353800 chr3A 89.751 361 24 9 2575 2934 607468855 607469203 1.600000e-122 449.0
25 TraesCS3D01G353800 chr3A 84.804 408 34 15 473 856 607459548 607459951 4.590000e-103 385.0
26 TraesCS3D01G353800 chr3A 89.308 318 19 3 1854 2171 607467799 607468101 4.590000e-103 385.0
27 TraesCS3D01G353800 chr3A 84.900 351 30 9 329 669 607465468 607465805 1.690000e-87 333.0
28 TraesCS3D01G353800 chr3A 92.969 128 9 0 2444 2571 607468100 607468227 1.390000e-43 187.0
29 TraesCS3D01G353800 chr3A 88.506 87 10 0 1854 1940 607487522 607487608 4.000000e-19 106.0
30 TraesCS3D01G353800 chr1B 88.667 300 31 3 1 298 497149565 497149863 2.150000e-96 363.0
31 TraesCS3D01G353800 chr6A 87.708 301 35 2 1 299 79670214 79670514 1.670000e-92 350.0
32 TraesCS3D01G353800 chr6A 88.889 63 4 3 400 460 613478067 613478128 1.130000e-09 75.0
33 TraesCS3D01G353800 chr1D 87.338 308 36 3 1 306 33841783 33841477 1.670000e-92 350.0
34 TraesCS3D01G353800 chr4A 87.667 300 35 2 1 298 691642323 691642622 6.020000e-92 348.0
35 TraesCS3D01G353800 chr6B 87.333 300 35 3 1 298 574456649 574456947 1.010000e-89 340.0
36 TraesCS3D01G353800 chr6B 90.588 85 8 0 988 1072 261671690 261671774 2.390000e-21 113.0
37 TraesCS3D01G353800 chr6B 82.000 100 13 4 331 430 668262361 668262455 2.420000e-11 80.5
38 TraesCS3D01G353800 chr6B 90.909 55 3 2 987 1041 11403391 11403443 4.060000e-09 73.1
39 TraesCS3D01G353800 chr5D 87.500 296 35 2 1 294 437756902 437756607 1.010000e-89 340.0
40 TraesCS3D01G353800 chr2B 87.086 302 36 3 1 299 377518947 377519248 3.620000e-89 339.0
41 TraesCS3D01G353800 chr2B 80.672 119 16 4 333 444 391521797 391521915 5.210000e-13 86.1
42 TraesCS3D01G353800 chr4B 87.086 302 33 5 1 298 172374707 172375006 1.300000e-88 337.0
43 TraesCS3D01G353800 chr4B 81.373 102 14 2 345 441 375413732 375413631 8.720000e-11 78.7
44 TraesCS3D01G353800 chr5B 89.773 88 9 0 1166 1253 206763546 206763459 2.390000e-21 113.0
45 TraesCS3D01G353800 chr5B 85.135 74 6 4 389 460 662432242 662432312 1.460000e-08 71.3
46 TraesCS3D01G353800 chr6D 91.071 56 5 0 329 384 467925572 467925627 3.140000e-10 76.8
47 TraesCS3D01G353800 chr6D 78.049 123 20 3 342 457 14539612 14539734 1.460000e-08 71.3
48 TraesCS3D01G353800 chr6D 87.097 62 7 1 400 460 390481359 390481420 5.250000e-08 69.4
49 TraesCS3D01G353800 chr7D 93.750 48 3 0 396 443 55086658 55086611 4.060000e-09 73.1
50 TraesCS3D01G353800 chr2D 90.909 55 3 2 987 1041 9926230 9926282 4.060000e-09 73.1
51 TraesCS3D01G353800 chrUn 85.484 62 8 1 400 460 314621096 314621035 2.440000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G353800 chr3D 464322786 464325719 2933 False 5419.000000 5419 100.000000 1 2934 1 chr3D.!!$F2 2933
1 TraesCS3D01G353800 chr3D 464315668 464318179 2511 False 498.275000 955 86.668750 464 2934 4 chr3D.!!$F4 2470
2 TraesCS3D01G353800 chr3D 464330653 464331736 1083 False 292.750000 529 88.374500 772 1766 2 chr3D.!!$F5 994
3 TraesCS3D01G353800 chr3B 617994078 617995098 1020 False 1051.000000 1051 85.567000 1894 2934 1 chr3B.!!$F2 1040
4 TraesCS3D01G353800 chr3B 617987492 617989083 1591 False 829.000000 926 86.790500 329 1897 2 chr3B.!!$F5 1568
5 TraesCS3D01G353800 chr3B 618002332 618003091 759 False 590.000000 590 81.242000 1000 1766 1 chr3B.!!$F3 766
6 TraesCS3D01G353800 chr3B 617886097 617887947 1850 False 570.333333 1064 85.738333 465 2306 3 chr3B.!!$F4 1841
7 TraesCS3D01G353800 chr3A 607459548 607469203 9655 False 464.888889 985 87.554444 329 2934 9 chr3A.!!$F1 2605
8 TraesCS3D01G353800 chr3A 607486740 607487608 868 False 366.500000 627 84.932000 966 1940 2 chr3A.!!$F2 974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 296 0.17668 CAAGTCCGGCTGTAGATGCT 59.823 55.0 0.0 0.0 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2252 4042 0.482446 AAGGAGTGCCCCATGTTGAA 59.518 50.0 0.0 0.0 34.66 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.375417 CTTGTGGAGCACATGTAAATTCA 57.625 39.130 0.00 0.00 44.16 2.57
23 24 4.764679 TGTGGAGCACATGTAAATTCAC 57.235 40.909 0.00 3.33 39.62 3.18
24 25 4.140536 TGTGGAGCACATGTAAATTCACA 58.859 39.130 12.07 12.07 39.62 3.58
25 26 4.582240 TGTGGAGCACATGTAAATTCACAA 59.418 37.500 13.21 1.79 39.62 3.33
26 27 5.243507 TGTGGAGCACATGTAAATTCACAAT 59.756 36.000 13.21 0.00 39.62 2.71
27 28 5.574055 GTGGAGCACATGTAAATTCACAATG 59.426 40.000 0.00 0.00 34.08 2.82
28 29 5.104374 GGAGCACATGTAAATTCACAATGG 58.896 41.667 0.00 0.00 30.84 3.16
29 30 4.497300 AGCACATGTAAATTCACAATGGC 58.503 39.130 0.00 0.00 30.84 4.40
30 31 4.021280 AGCACATGTAAATTCACAATGGCA 60.021 37.500 0.00 0.00 30.84 4.92
31 32 4.689812 GCACATGTAAATTCACAATGGCAA 59.310 37.500 0.00 0.00 30.84 4.52
32 33 5.389725 GCACATGTAAATTCACAATGGCAAC 60.390 40.000 0.00 0.00 30.84 4.17
33 34 5.120519 CACATGTAAATTCACAATGGCAACC 59.879 40.000 0.00 0.00 30.84 3.77
34 35 4.944619 TGTAAATTCACAATGGCAACCA 57.055 36.364 0.00 0.00 38.19 3.67
35 36 5.282055 TGTAAATTCACAATGGCAACCAA 57.718 34.783 0.00 0.00 36.95 3.67
36 37 5.295950 TGTAAATTCACAATGGCAACCAAG 58.704 37.500 0.00 0.00 36.95 3.61
37 38 3.405823 AATTCACAATGGCAACCAAGG 57.594 42.857 0.00 0.00 36.95 3.61
38 39 2.079170 TTCACAATGGCAACCAAGGA 57.921 45.000 0.00 0.00 36.95 3.36
39 40 1.619654 TCACAATGGCAACCAAGGAG 58.380 50.000 0.00 0.00 36.95 3.69
40 41 0.604578 CACAATGGCAACCAAGGAGG 59.395 55.000 0.00 0.00 45.67 4.30
41 42 1.187567 ACAATGGCAACCAAGGAGGC 61.188 55.000 0.00 0.00 43.14 4.70
42 43 1.155859 AATGGCAACCAAGGAGGCA 59.844 52.632 12.83 12.83 43.14 4.75
43 44 0.471591 AATGGCAACCAAGGAGGCAA 60.472 50.000 13.98 2.36 43.14 4.52
44 45 0.252375 ATGGCAACCAAGGAGGCAAT 60.252 50.000 13.98 4.33 43.14 3.56
45 46 1.186917 TGGCAACCAAGGAGGCAATG 61.187 55.000 9.30 0.00 43.14 2.82
46 47 1.079612 GCAACCAAGGAGGCAATGC 60.080 57.895 0.00 0.00 43.14 3.56
47 48 1.538687 GCAACCAAGGAGGCAATGCT 61.539 55.000 4.82 0.00 43.14 3.79
48 49 0.971386 CAACCAAGGAGGCAATGCTT 59.029 50.000 4.82 0.00 40.78 3.91
55 56 3.604875 AGGAGGCAATGCTTGAATTTG 57.395 42.857 4.82 0.00 0.00 2.32
56 57 2.235402 AGGAGGCAATGCTTGAATTTGG 59.765 45.455 4.82 0.00 0.00 3.28
57 58 2.004733 GAGGCAATGCTTGAATTTGGC 58.995 47.619 4.82 0.00 43.85 4.52
58 59 1.348366 AGGCAATGCTTGAATTTGGCA 59.652 42.857 4.82 4.01 45.37 4.92
59 60 2.026636 AGGCAATGCTTGAATTTGGCAT 60.027 40.909 4.82 7.56 46.79 4.40
96 97 8.880878 TTTATGTAAACGCTATCTATGCTTGA 57.119 30.769 0.00 0.00 0.00 3.02
97 98 9.489084 TTTATGTAAACGCTATCTATGCTTGAT 57.511 29.630 0.00 0.00 0.00 2.57
100 101 8.294341 TGTAAACGCTATCTATGCTTGATAAC 57.706 34.615 0.00 0.00 0.00 1.89
101 102 7.923878 TGTAAACGCTATCTATGCTTGATAACA 59.076 33.333 0.00 0.00 0.00 2.41
102 103 7.786178 AAACGCTATCTATGCTTGATAACAA 57.214 32.000 0.00 0.00 34.65 2.83
103 104 6.771188 ACGCTATCTATGCTTGATAACAAC 57.229 37.500 0.00 0.00 32.27 3.32
104 105 6.280643 ACGCTATCTATGCTTGATAACAACA 58.719 36.000 0.00 0.00 32.27 3.33
105 106 6.761242 ACGCTATCTATGCTTGATAACAACAA 59.239 34.615 0.00 0.00 32.27 2.83
106 107 7.442364 ACGCTATCTATGCTTGATAACAACAAT 59.558 33.333 0.00 0.00 32.27 2.71
107 108 8.285394 CGCTATCTATGCTTGATAACAACAATT 58.715 33.333 0.00 0.00 32.27 2.32
108 109 9.390795 GCTATCTATGCTTGATAACAACAATTG 57.609 33.333 3.24 3.24 32.27 2.32
109 110 9.390795 CTATCTATGCTTGATAACAACAATTGC 57.609 33.333 5.05 0.00 32.27 3.56
110 111 7.395190 TCTATGCTTGATAACAACAATTGCT 57.605 32.000 5.05 0.00 32.27 3.91
111 112 8.504812 TCTATGCTTGATAACAACAATTGCTA 57.495 30.769 5.05 0.00 32.27 3.49
112 113 9.123902 TCTATGCTTGATAACAACAATTGCTAT 57.876 29.630 5.05 0.00 32.27 2.97
113 114 9.740239 CTATGCTTGATAACAACAATTGCTATT 57.260 29.630 5.05 0.00 32.27 1.73
116 117 9.352784 TGCTTGATAACAACAATTGCTATTTAC 57.647 29.630 5.05 0.00 32.27 2.01
117 118 8.523464 GCTTGATAACAACAATTGCTATTTACG 58.477 33.333 5.05 0.00 32.27 3.18
118 119 9.554724 CTTGATAACAACAATTGCTATTTACGT 57.445 29.630 5.05 0.00 32.27 3.57
119 120 8.888332 TGATAACAACAATTGCTATTTACGTG 57.112 30.769 5.05 0.00 0.00 4.49
120 121 7.483375 TGATAACAACAATTGCTATTTACGTGC 59.517 33.333 5.05 0.00 0.00 5.34
121 122 4.155449 ACAACAATTGCTATTTACGTGCG 58.845 39.130 5.05 0.00 0.00 5.34
122 123 4.083749 ACAACAATTGCTATTTACGTGCGA 60.084 37.500 5.05 0.00 0.00 5.10
123 124 3.998522 ACAATTGCTATTTACGTGCGAC 58.001 40.909 5.05 0.00 0.00 5.19
124 125 3.433957 ACAATTGCTATTTACGTGCGACA 59.566 39.130 5.05 0.00 0.00 4.35
125 126 4.094294 ACAATTGCTATTTACGTGCGACAT 59.906 37.500 5.05 0.00 0.00 3.06
126 127 4.875544 ATTGCTATTTACGTGCGACATT 57.124 36.364 0.00 0.00 0.00 2.71
127 128 3.649870 TGCTATTTACGTGCGACATTG 57.350 42.857 0.00 0.00 0.00 2.82
128 129 2.997303 TGCTATTTACGTGCGACATTGT 59.003 40.909 0.00 0.00 0.00 2.71
129 130 3.181525 TGCTATTTACGTGCGACATTGTG 60.182 43.478 0.00 0.00 0.00 3.33
130 131 3.181524 GCTATTTACGTGCGACATTGTGT 60.182 43.478 0.00 0.00 0.00 3.72
131 132 2.934107 TTTACGTGCGACATTGTGTC 57.066 45.000 0.00 0.07 43.65 3.67
139 140 3.568181 GACATTGTGTCGCATGTCG 57.432 52.632 0.00 0.00 37.67 4.35
140 141 1.067693 GACATTGTGTCGCATGTCGA 58.932 50.000 7.93 7.93 46.29 4.20
153 154 3.656651 CATGTCGACGTGCATGTATTT 57.343 42.857 23.82 0.00 38.06 1.40
154 155 3.344852 CATGTCGACGTGCATGTATTTG 58.655 45.455 23.82 2.71 38.06 2.32
155 156 2.409012 TGTCGACGTGCATGTATTTGT 58.591 42.857 12.53 0.00 0.00 2.83
156 157 3.576648 TGTCGACGTGCATGTATTTGTA 58.423 40.909 12.53 0.00 0.00 2.41
157 158 4.177783 TGTCGACGTGCATGTATTTGTAT 58.822 39.130 12.53 0.00 0.00 2.29
158 159 4.032331 TGTCGACGTGCATGTATTTGTATG 59.968 41.667 12.53 0.00 0.00 2.39
159 160 3.553917 TCGACGTGCATGTATTTGTATGG 59.446 43.478 12.53 0.00 0.00 2.74
160 161 3.553917 CGACGTGCATGTATTTGTATGGA 59.446 43.478 12.53 0.00 0.00 3.41
161 162 4.211164 CGACGTGCATGTATTTGTATGGAT 59.789 41.667 12.53 0.00 0.00 3.41
162 163 5.277297 CGACGTGCATGTATTTGTATGGATT 60.277 40.000 12.53 0.00 0.00 3.01
163 164 6.449635 ACGTGCATGTATTTGTATGGATTT 57.550 33.333 10.57 0.00 0.00 2.17
164 165 6.264832 ACGTGCATGTATTTGTATGGATTTG 58.735 36.000 10.57 0.00 0.00 2.32
165 166 6.094742 ACGTGCATGTATTTGTATGGATTTGA 59.905 34.615 10.57 0.00 0.00 2.69
166 167 6.634035 CGTGCATGTATTTGTATGGATTTGAG 59.366 38.462 0.00 0.00 0.00 3.02
167 168 7.467131 CGTGCATGTATTTGTATGGATTTGAGA 60.467 37.037 0.00 0.00 0.00 3.27
168 169 7.859377 GTGCATGTATTTGTATGGATTTGAGAG 59.141 37.037 0.00 0.00 0.00 3.20
169 170 7.557358 TGCATGTATTTGTATGGATTTGAGAGT 59.443 33.333 0.00 0.00 0.00 3.24
170 171 8.072567 GCATGTATTTGTATGGATTTGAGAGTC 58.927 37.037 0.00 0.00 0.00 3.36
171 172 8.562892 CATGTATTTGTATGGATTTGAGAGTCC 58.437 37.037 0.00 0.00 35.02 3.85
172 173 6.761242 TGTATTTGTATGGATTTGAGAGTCCG 59.239 38.462 0.00 0.00 37.32 4.79
173 174 5.414789 TTTGTATGGATTTGAGAGTCCGA 57.585 39.130 0.00 0.00 37.32 4.55
174 175 5.414789 TTGTATGGATTTGAGAGTCCGAA 57.585 39.130 0.00 0.00 37.32 4.30
175 176 5.614324 TGTATGGATTTGAGAGTCCGAAT 57.386 39.130 0.00 0.00 37.32 3.34
176 177 5.989477 TGTATGGATTTGAGAGTCCGAATT 58.011 37.500 0.00 0.00 37.32 2.17
177 178 6.414732 TGTATGGATTTGAGAGTCCGAATTT 58.585 36.000 0.00 0.00 37.32 1.82
178 179 5.824904 ATGGATTTGAGAGTCCGAATTTG 57.175 39.130 0.00 0.00 37.32 2.32
179 180 4.009675 TGGATTTGAGAGTCCGAATTTGG 58.990 43.478 5.22 5.22 37.32 3.28
180 181 3.378427 GGATTTGAGAGTCCGAATTTGGG 59.622 47.826 12.04 0.91 0.00 4.12
181 182 3.780804 TTTGAGAGTCCGAATTTGGGA 57.219 42.857 12.04 3.50 0.00 4.37
182 183 4.301072 TTTGAGAGTCCGAATTTGGGAT 57.699 40.909 12.04 0.59 35.67 3.85
183 184 5.429681 TTTGAGAGTCCGAATTTGGGATA 57.570 39.130 12.04 0.00 35.67 2.59
184 185 5.630415 TTGAGAGTCCGAATTTGGGATAT 57.370 39.130 12.04 0.00 35.67 1.63
185 186 4.960938 TGAGAGTCCGAATTTGGGATATG 58.039 43.478 12.04 0.00 35.67 1.78
186 187 4.408921 TGAGAGTCCGAATTTGGGATATGT 59.591 41.667 12.04 0.00 35.67 2.29
187 188 4.708177 AGAGTCCGAATTTGGGATATGTG 58.292 43.478 12.04 0.00 35.67 3.21
188 189 3.815401 GAGTCCGAATTTGGGATATGTGG 59.185 47.826 12.04 0.00 35.67 4.17
189 190 3.458118 AGTCCGAATTTGGGATATGTGGA 59.542 43.478 12.04 0.00 35.67 4.02
190 191 4.104738 AGTCCGAATTTGGGATATGTGGAT 59.895 41.667 12.04 0.00 35.67 3.41
191 192 4.216257 GTCCGAATTTGGGATATGTGGATG 59.784 45.833 12.04 0.00 35.67 3.51
192 193 3.057315 CCGAATTTGGGATATGTGGATGC 60.057 47.826 3.45 0.00 0.00 3.91
193 194 3.057315 CGAATTTGGGATATGTGGATGCC 60.057 47.826 0.00 0.00 37.81 4.40
194 195 3.909427 ATTTGGGATATGTGGATGCCT 57.091 42.857 0.00 0.00 38.13 4.75
195 196 2.662535 TTGGGATATGTGGATGCCTG 57.337 50.000 0.00 0.00 38.13 4.85
196 197 1.818419 TGGGATATGTGGATGCCTGA 58.182 50.000 0.00 0.00 38.13 3.86
197 198 2.134354 TGGGATATGTGGATGCCTGAA 58.866 47.619 0.00 0.00 38.13 3.02
198 199 2.513317 TGGGATATGTGGATGCCTGAAA 59.487 45.455 0.00 0.00 38.13 2.69
199 200 3.152341 GGGATATGTGGATGCCTGAAAG 58.848 50.000 0.00 0.00 34.59 2.62
214 215 4.176120 CTGAAAGGAAATATGAGGGCCT 57.824 45.455 5.25 5.25 0.00 5.19
215 216 3.887716 CTGAAAGGAAATATGAGGGCCTG 59.112 47.826 12.95 0.00 0.00 4.85
216 217 3.269381 TGAAAGGAAATATGAGGGCCTGT 59.731 43.478 12.95 1.03 0.00 4.00
217 218 3.584733 AAGGAAATATGAGGGCCTGTC 57.415 47.619 12.95 0.00 0.00 3.51
218 219 1.777272 AGGAAATATGAGGGCCTGTCC 59.223 52.381 12.95 7.81 0.00 4.02
219 220 1.543429 GGAAATATGAGGGCCTGTCCG 60.543 57.143 12.95 0.00 34.94 4.79
220 221 0.474184 AAATATGAGGGCCTGTCCGG 59.526 55.000 12.95 0.00 34.94 5.14
221 222 0.399949 AATATGAGGGCCTGTCCGGA 60.400 55.000 12.95 0.00 34.94 5.14
222 223 1.122019 ATATGAGGGCCTGTCCGGAC 61.122 60.000 28.17 28.17 41.67 4.79
262 263 4.817063 CGGGCGCATGCGTTTCAG 62.817 66.667 37.54 23.91 44.10 3.02
263 264 4.481112 GGGCGCATGCGTTTCAGG 62.481 66.667 37.54 11.92 44.10 3.86
264 265 4.481112 GGCGCATGCGTTTCAGGG 62.481 66.667 37.54 11.16 44.10 4.45
265 266 4.481112 GCGCATGCGTTTCAGGGG 62.481 66.667 37.54 10.41 41.55 4.79
266 267 4.481112 CGCATGCGTTTCAGGGGC 62.481 66.667 31.33 0.00 32.86 5.80
267 268 4.133796 GCATGCGTTTCAGGGGCC 62.134 66.667 0.00 0.00 0.00 5.80
268 269 3.814268 CATGCGTTTCAGGGGCCG 61.814 66.667 0.00 0.00 0.00 6.13
271 272 4.796495 GCGTTTCAGGGGCCGGAT 62.796 66.667 5.05 0.00 0.00 4.18
272 273 2.045340 CGTTTCAGGGGCCGGATT 60.045 61.111 5.05 0.00 0.00 3.01
273 274 1.677633 CGTTTCAGGGGCCGGATTT 60.678 57.895 5.05 0.00 0.00 2.17
274 275 1.890174 GTTTCAGGGGCCGGATTTG 59.110 57.895 5.05 0.00 0.00 2.32
275 276 1.981853 TTTCAGGGGCCGGATTTGC 60.982 57.895 5.05 0.00 0.00 3.68
282 283 2.885113 GCCGGATTTGCCAAGTCC 59.115 61.111 5.05 8.84 35.94 3.85
293 294 3.369381 CCAAGTCCGGCTGTAGATG 57.631 57.895 0.00 0.00 0.00 2.90
294 295 0.811616 CCAAGTCCGGCTGTAGATGC 60.812 60.000 0.00 0.00 0.00 3.91
295 296 0.176680 CAAGTCCGGCTGTAGATGCT 59.823 55.000 0.00 0.00 0.00 3.79
296 297 0.461961 AAGTCCGGCTGTAGATGCTC 59.538 55.000 0.00 0.00 0.00 4.26
297 298 0.396417 AGTCCGGCTGTAGATGCTCT 60.396 55.000 0.00 0.00 0.00 4.09
298 299 1.133761 AGTCCGGCTGTAGATGCTCTA 60.134 52.381 0.00 0.00 0.00 2.43
299 300 1.889829 GTCCGGCTGTAGATGCTCTAT 59.110 52.381 0.00 0.00 30.76 1.98
300 301 1.889170 TCCGGCTGTAGATGCTCTATG 59.111 52.381 0.00 0.00 30.76 2.23
301 302 1.671261 CCGGCTGTAGATGCTCTATGC 60.671 57.143 0.00 10.00 43.25 3.14
317 318 6.563422 GCTCTATGCAATGTTTTCCATAACA 58.437 36.000 0.00 0.00 40.72 2.41
340 341 6.527722 ACATTTTTGCTCACATAAGTATTGCG 59.472 34.615 0.00 0.00 0.00 4.85
343 344 3.006247 TGCTCACATAAGTATTGCGCAA 58.994 40.909 27.24 27.24 0.00 4.85
348 349 6.102006 TCACATAAGTATTGCGCAACTAAC 57.898 37.500 27.64 22.44 0.00 2.34
371 372 5.234329 ACTCCTATGTCATTGATTTTACGCG 59.766 40.000 3.53 3.53 0.00 6.01
372 373 5.353111 TCCTATGTCATTGATTTTACGCGA 58.647 37.500 15.93 0.00 0.00 5.87
378 379 6.607689 TGTCATTGATTTTACGCGAAGATTT 58.392 32.000 15.93 0.00 0.00 2.17
379 380 6.522855 TGTCATTGATTTTACGCGAAGATTTG 59.477 34.615 15.93 0.00 0.00 2.32
385 386 4.797693 TTTACGCGAAGATTTGTGTGAA 57.202 36.364 15.93 4.80 36.09 3.18
420 425 7.080353 TGCTTGATTGAGTCATTTAGATGTG 57.920 36.000 0.00 0.00 36.54 3.21
421 426 5.970023 GCTTGATTGAGTCATTTAGATGTGC 59.030 40.000 0.00 0.00 36.54 4.57
456 461 9.387257 TGATACATCTAAAAGTACGTAGACAGA 57.613 33.333 0.00 0.00 0.00 3.41
457 462 9.649024 GATACATCTAAAAGTACGTAGACAGAC 57.351 37.037 0.00 0.00 0.00 3.51
458 463 6.850555 ACATCTAAAAGTACGTAGACAGACC 58.149 40.000 0.00 0.00 0.00 3.85
459 464 5.886960 TCTAAAAGTACGTAGACAGACCC 57.113 43.478 0.00 0.00 0.00 4.46
460 465 5.564550 TCTAAAAGTACGTAGACAGACCCT 58.435 41.667 0.00 0.00 0.00 4.34
461 466 6.006449 TCTAAAAGTACGTAGACAGACCCTT 58.994 40.000 0.00 0.00 0.00 3.95
462 467 7.168219 TCTAAAAGTACGTAGACAGACCCTTA 58.832 38.462 0.00 0.00 0.00 2.69
494 499 0.389025 ACCCGGTCGAGTTACGTTTT 59.611 50.000 0.00 0.00 43.13 2.43
499 504 2.632228 GGTCGAGTTACGTTTTTGCAC 58.368 47.619 0.00 0.00 43.13 4.57
519 527 3.493129 CACATATACGTGAATTGACCCGG 59.507 47.826 0.00 0.00 39.34 5.73
574 587 3.000322 GTCACCGCGTAGAGAATTTCATG 60.000 47.826 4.92 0.00 0.00 3.07
591 604 1.462283 CATGGACGTCAAACAGAGCAG 59.538 52.381 18.91 0.00 0.00 4.24
636 653 1.197721 GGATTGGCAAGTGAAGACGTG 59.802 52.381 5.96 0.00 34.93 4.49
655 672 4.382320 TCCGGGCGAAACGAAGGG 62.382 66.667 0.00 0.00 0.00 3.95
714 757 5.762825 AAGTACAGTAGTTGTCAACTCGA 57.237 39.130 21.40 2.67 41.77 4.04
849 987 2.533266 GTATATAAATACGCCGGCGCT 58.467 47.619 46.22 33.59 44.19 5.92
871 2253 4.491676 TCGTCAGTTTATAGCACCTCAAC 58.508 43.478 0.00 0.00 0.00 3.18
905 2330 2.478134 CTGCCTGAGAACAAAGACGAAG 59.522 50.000 0.00 0.00 0.00 3.79
908 2333 3.728845 CCTGAGAACAAAGACGAAGGAA 58.271 45.455 0.00 0.00 0.00 3.36
917 2342 5.429130 ACAAAGACGAAGGAAAGAAAGACT 58.571 37.500 0.00 0.00 0.00 3.24
974 2443 1.376037 CGTGGGAGAGGTTGGCTTC 60.376 63.158 0.00 0.00 0.00 3.86
1074 2549 3.369381 CGATTTCCTCGGTGAGCAT 57.631 52.632 0.00 0.00 43.82 3.79
1075 2550 0.933097 CGATTTCCTCGGTGAGCATG 59.067 55.000 0.00 0.00 43.82 4.06
1076 2551 0.659957 GATTTCCTCGGTGAGCATGC 59.340 55.000 10.51 10.51 0.00 4.06
1077 2552 1.091771 ATTTCCTCGGTGAGCATGCG 61.092 55.000 13.01 0.00 0.00 4.73
1078 2553 2.449031 TTTCCTCGGTGAGCATGCGT 62.449 55.000 13.01 0.00 0.00 5.24
1079 2554 3.190849 CCTCGGTGAGCATGCGTG 61.191 66.667 13.01 0.09 0.00 5.34
1080 2555 2.433145 CTCGGTGAGCATGCGTGT 60.433 61.111 13.01 0.00 0.00 4.49
1090 2590 1.878070 CATGCGTGTTCCACTGCAT 59.122 52.632 15.66 15.66 46.40 3.96
1097 2597 1.885887 GTGTTCCACTGCATAAGCCAA 59.114 47.619 0.00 0.00 41.13 4.52
1182 2700 0.744414 CCATGTACGTGCAGGGAAGG 60.744 60.000 29.97 13.30 42.37 3.46
1231 2749 3.123620 CCAGGAGCGCAAGAGCAC 61.124 66.667 11.47 0.00 42.27 4.40
1286 2822 3.209410 CACAGCTCTGTTTCTCTTGGTT 58.791 45.455 0.00 0.00 42.83 3.67
1287 2823 3.249559 CACAGCTCTGTTTCTCTTGGTTC 59.750 47.826 0.00 0.00 42.83 3.62
1288 2824 2.810852 CAGCTCTGTTTCTCTTGGTTCC 59.189 50.000 0.00 0.00 0.00 3.62
1289 2825 2.708325 AGCTCTGTTTCTCTTGGTTCCT 59.292 45.455 0.00 0.00 0.00 3.36
1290 2826 3.070748 GCTCTGTTTCTCTTGGTTCCTC 58.929 50.000 0.00 0.00 0.00 3.71
1291 2827 3.321497 CTCTGTTTCTCTTGGTTCCTCG 58.679 50.000 0.00 0.00 0.00 4.63
1292 2828 2.698797 TCTGTTTCTCTTGGTTCCTCGT 59.301 45.455 0.00 0.00 0.00 4.18
1293 2829 3.060602 CTGTTTCTCTTGGTTCCTCGTC 58.939 50.000 0.00 0.00 0.00 4.20
1294 2830 2.698797 TGTTTCTCTTGGTTCCTCGTCT 59.301 45.455 0.00 0.00 0.00 4.18
1295 2831 3.060602 GTTTCTCTTGGTTCCTCGTCTG 58.939 50.000 0.00 0.00 0.00 3.51
1296 2832 2.287977 TCTCTTGGTTCCTCGTCTGA 57.712 50.000 0.00 0.00 0.00 3.27
1297 2833 2.163509 TCTCTTGGTTCCTCGTCTGAG 58.836 52.381 0.00 0.00 42.18 3.35
1305 2841 0.736672 TCCTCGTCTGAGTCGTCTCG 60.737 60.000 5.22 0.98 43.09 4.04
1326 2885 3.682155 CGACCCCGGTCCACAAAATATAA 60.682 47.826 8.30 0.00 41.76 0.98
1334 2893 6.475402 CCGGTCCACAAAATATAATTTTGCTC 59.525 38.462 19.79 10.67 41.66 4.26
1388 3095 1.627297 GGAGGAACCCGAGCTGGAAT 61.627 60.000 0.00 0.00 42.00 3.01
1436 3143 2.650196 GCGGCCAATGTGCAAGAA 59.350 55.556 2.24 0.00 0.00 2.52
1470 3177 1.429148 GATCATGGACCGCGACAACC 61.429 60.000 8.23 5.75 0.00 3.77
1478 3185 2.125912 CGCGACAACCTCTCCAGG 60.126 66.667 0.00 0.00 46.87 4.45
1554 3267 2.295885 AGCATCAGCATTTCAGTAGCC 58.704 47.619 0.00 0.00 45.49 3.93
1560 3273 3.444742 TCAGCATTTCAGTAGCCAATTGG 59.555 43.478 20.81 20.81 38.53 3.16
1562 3275 4.082081 CAGCATTTCAGTAGCCAATTGGAA 60.082 41.667 29.02 12.25 37.39 3.53
1565 3278 5.353938 CATTTCAGTAGCCAATTGGAATGG 58.646 41.667 29.02 12.30 35.24 3.16
1566 3279 3.737559 TCAGTAGCCAATTGGAATGGT 57.262 42.857 29.02 8.94 40.23 3.55
1757 3484 2.045926 GGCATCACCTTCACCGCT 60.046 61.111 0.00 0.00 34.51 5.52
1773 3500 1.197721 CCGCTGCAAAGGTAAAGACAG 59.802 52.381 0.00 0.00 0.00 3.51
1784 3511 0.878416 TAAAGACAGGCGCGCATTTT 59.122 45.000 34.42 24.39 0.00 1.82
1786 3513 0.387239 AAGACAGGCGCGCATTTTTC 60.387 50.000 34.42 20.87 0.00 2.29
1799 3526 5.060816 CGCGCATTTTTCTGATTTTGTACAT 59.939 36.000 8.75 0.00 0.00 2.29
1800 3527 6.235642 GCGCATTTTTCTGATTTTGTACATG 58.764 36.000 0.30 0.00 0.00 3.21
1802 3529 6.536688 GCATTTTTCTGATTTTGTACATGGC 58.463 36.000 0.00 0.00 0.00 4.40
1803 3530 6.369615 GCATTTTTCTGATTTTGTACATGGCT 59.630 34.615 0.00 0.00 0.00 4.75
1804 3531 7.622672 GCATTTTTCTGATTTTGTACATGGCTG 60.623 37.037 0.00 0.00 0.00 4.85
1806 3533 2.754552 TCTGATTTTGTACATGGCTGGC 59.245 45.455 0.00 0.00 0.00 4.85
1807 3534 1.824230 TGATTTTGTACATGGCTGGCC 59.176 47.619 4.43 4.43 0.00 5.36
1819 3546 3.385384 CTGGCCAGCCTCTGTCGA 61.385 66.667 22.33 0.00 36.94 4.20
1825 3561 1.110442 CCAGCCTCTGTCGATCTCTT 58.890 55.000 0.00 0.00 0.00 2.85
1835 3571 3.687125 TGTCGATCTCTTGTGGACTAGT 58.313 45.455 0.00 0.00 0.00 2.57
1843 3579 4.278669 TCTCTTGTGGACTAGTGTGAGTTC 59.721 45.833 0.00 0.00 0.00 3.01
1845 3581 4.038042 TCTTGTGGACTAGTGTGAGTTCTG 59.962 45.833 0.00 0.00 0.00 3.02
1851 3587 4.499183 GACTAGTGTGAGTTCTGATTGGG 58.501 47.826 0.00 0.00 0.00 4.12
1923 3659 2.359230 GCAGAGCTTTCGTGGGCT 60.359 61.111 0.00 0.00 41.88 5.19
1975 3725 2.094390 GGTCGTGCATAACTAGTGGTGA 60.094 50.000 10.94 0.00 0.00 4.02
2041 3791 6.548251 ACATGCCTATGATTGAATGATGTGAA 59.452 34.615 0.00 0.00 37.73 3.18
2043 3793 6.977213 TGCCTATGATTGAATGATGTGAATG 58.023 36.000 0.00 0.00 0.00 2.67
2055 3805 8.738106 TGAATGATGTGAATGCAAAAGTGTATA 58.262 29.630 0.00 0.00 28.83 1.47
2107 3858 8.239038 TGTATAGTCAGAGCAGCTTAACTTAT 57.761 34.615 0.00 0.00 0.00 1.73
2108 3859 8.696374 TGTATAGTCAGAGCAGCTTAACTTATT 58.304 33.333 0.00 0.00 0.00 1.40
2193 3971 4.325028 TTGTTGAATGCTTGTTGATGCT 57.675 36.364 0.00 0.00 0.00 3.79
2220 3998 6.938030 TGATAACTTGGTAGTTTGTACAAGGG 59.062 38.462 8.56 0.00 41.85 3.95
2231 4009 1.202830 TGTACAAGGGGTGCGTTCATT 60.203 47.619 0.00 0.00 34.44 2.57
2247 4037 5.559417 GCGTTCATTTACGAAGTTTTCCTGA 60.559 40.000 0.00 0.00 37.78 3.86
2252 4042 2.622064 ACGAAGTTTTCCTGACAGCT 57.378 45.000 0.00 0.00 37.78 4.24
2258 4048 3.620488 AGTTTTCCTGACAGCTTCAACA 58.380 40.909 0.00 0.00 32.21 3.33
2286 4076 2.746375 CCTTACATGGGAGCGGCCT 61.746 63.158 0.00 0.00 36.66 5.19
2291 4081 4.115199 ATGGGAGCGGCCTTGACC 62.115 66.667 0.00 0.00 36.66 4.02
2296 4086 2.281761 AGCGGCCTTGACCAAGTG 60.282 61.111 0.00 2.41 36.72 3.16
2324 4114 2.490328 ACCACAAACGACATGCTTTG 57.510 45.000 8.74 8.74 34.18 2.77
2364 4482 3.019564 GCTGCATTGGAGGACTGTAATT 58.980 45.455 7.33 0.00 0.00 1.40
2365 4483 3.065925 GCTGCATTGGAGGACTGTAATTC 59.934 47.826 7.33 0.00 0.00 2.17
2371 4489 5.560722 TTGGAGGACTGTAATTCTGTTCA 57.439 39.130 0.00 0.00 0.00 3.18
2380 4498 5.995897 ACTGTAATTCTGTTCACCCTTGTAC 59.004 40.000 0.00 0.00 0.00 2.90
2381 4499 4.992319 TGTAATTCTGTTCACCCTTGTACG 59.008 41.667 0.00 0.00 0.00 3.67
2418 4538 3.319198 GCACTCCGTTCCCAGGGA 61.319 66.667 3.01 3.01 35.57 4.20
2484 9518 2.124996 CCTCCTTCCCCCTCACCA 59.875 66.667 0.00 0.00 0.00 4.17
2513 9561 2.506231 TGCCTCCCCATTAACGACATAA 59.494 45.455 0.00 0.00 0.00 1.90
2535 9583 1.001181 GTTGCAACATGTTGGATGGCT 59.999 47.619 33.56 0.00 40.52 4.75
2571 9641 8.648097 GCAAATCGACGTTGATTAGATACATAT 58.352 33.333 27.29 9.15 37.59 1.78
2608 10302 1.414919 TCAACCCCCGTCTATGTATGC 59.585 52.381 0.00 0.00 0.00 3.14
2650 10344 6.567687 TGTAATCACCATGTTCGACAAAAT 57.432 33.333 0.00 0.00 0.00 1.82
2663 10376 7.424803 TGTTCGACAAAATCAATGATTCTGTT 58.575 30.769 15.16 1.44 33.98 3.16
2675 10388 6.656270 TCAATGATTCTGTTTGTGTCAGCTAT 59.344 34.615 0.00 0.00 33.48 2.97
2678 10391 5.409520 TGATTCTGTTTGTGTCAGCTATGTC 59.590 40.000 0.00 0.00 33.48 3.06
2682 10395 4.702831 TGTTTGTGTCAGCTATGTCTTCA 58.297 39.130 0.00 0.00 0.00 3.02
2688 10401 4.515191 GTGTCAGCTATGTCTTCAACCAAA 59.485 41.667 0.00 0.00 0.00 3.28
2731 10444 1.737793 CATGTCCCTTTTCCACTACGC 59.262 52.381 0.00 0.00 0.00 4.42
2771 10484 4.718961 ACCAACAGAACTTTGCTATGACT 58.281 39.130 0.00 0.00 0.00 3.41
2774 10487 3.679389 ACAGAACTTTGCTATGACTGGG 58.321 45.455 0.00 0.00 0.00 4.45
2827 10540 7.148738 GCATGACTATGGTAATGTCTACGATTG 60.149 40.741 8.26 0.00 36.81 2.67
2845 10569 5.988561 ACGATTGTTTACGTTAGGTTGGTAA 59.011 36.000 0.00 0.00 39.75 2.85
2848 10572 7.321034 CGATTGTTTACGTTAGGTTGGTAAAAC 59.679 37.037 0.00 0.00 37.73 2.43
2849 10573 7.622893 TTGTTTACGTTAGGTTGGTAAAACT 57.377 32.000 0.00 0.00 37.73 2.66
2857 10581 2.747446 AGGTTGGTAAAACTGCTATGCG 59.253 45.455 0.00 0.00 29.90 4.73
2908 10632 7.446625 TCCTTGTCGGTATAAACTAGACCTATC 59.553 40.741 0.00 0.00 37.90 2.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.764679 TGTGAATTTACATGTGCTCCAC 57.235 40.909 9.11 10.33 34.56 4.02
4 5 5.336610 CCATTGTGAATTTACATGTGCTCCA 60.337 40.000 9.11 0.00 0.00 3.86
5 6 5.104374 CCATTGTGAATTTACATGTGCTCC 58.896 41.667 9.11 0.00 0.00 4.70
6 7 4.563976 GCCATTGTGAATTTACATGTGCTC 59.436 41.667 9.11 0.10 0.00 4.26
7 8 4.021280 TGCCATTGTGAATTTACATGTGCT 60.021 37.500 9.11 0.00 0.00 4.40
8 9 4.244066 TGCCATTGTGAATTTACATGTGC 58.756 39.130 9.11 7.53 0.00 4.57
9 10 5.120519 GGTTGCCATTGTGAATTTACATGTG 59.879 40.000 9.11 6.59 0.00 3.21
10 11 5.221601 TGGTTGCCATTGTGAATTTACATGT 60.222 36.000 2.69 2.69 0.00 3.21
11 12 5.236282 TGGTTGCCATTGTGAATTTACATG 58.764 37.500 3.63 5.16 0.00 3.21
12 13 5.480642 TGGTTGCCATTGTGAATTTACAT 57.519 34.783 3.63 0.00 0.00 2.29
13 14 4.944619 TGGTTGCCATTGTGAATTTACA 57.055 36.364 0.00 0.00 0.00 2.41
14 15 4.690280 CCTTGGTTGCCATTGTGAATTTAC 59.310 41.667 0.00 0.00 31.53 2.01
15 16 4.590647 TCCTTGGTTGCCATTGTGAATTTA 59.409 37.500 0.00 0.00 31.53 1.40
16 17 3.390639 TCCTTGGTTGCCATTGTGAATTT 59.609 39.130 0.00 0.00 31.53 1.82
17 18 2.971330 TCCTTGGTTGCCATTGTGAATT 59.029 40.909 0.00 0.00 31.53 2.17
18 19 2.564062 CTCCTTGGTTGCCATTGTGAAT 59.436 45.455 0.00 0.00 31.53 2.57
19 20 1.962807 CTCCTTGGTTGCCATTGTGAA 59.037 47.619 0.00 0.00 31.53 3.18
20 21 1.619654 CTCCTTGGTTGCCATTGTGA 58.380 50.000 0.00 0.00 31.53 3.58
21 22 0.604578 CCTCCTTGGTTGCCATTGTG 59.395 55.000 0.00 0.00 31.53 3.33
22 23 1.187567 GCCTCCTTGGTTGCCATTGT 61.188 55.000 0.00 0.00 38.35 2.71
23 24 1.186917 TGCCTCCTTGGTTGCCATTG 61.187 55.000 0.00 0.00 38.35 2.82
24 25 0.471591 TTGCCTCCTTGGTTGCCATT 60.472 50.000 0.00 0.00 38.35 3.16
25 26 0.252375 ATTGCCTCCTTGGTTGCCAT 60.252 50.000 0.00 0.00 38.35 4.40
26 27 1.155859 ATTGCCTCCTTGGTTGCCA 59.844 52.632 0.00 0.00 38.35 4.92
27 28 1.593265 CATTGCCTCCTTGGTTGCC 59.407 57.895 0.00 0.00 38.35 4.52
28 29 1.079612 GCATTGCCTCCTTGGTTGC 60.080 57.895 0.00 0.00 38.35 4.17
29 30 0.971386 AAGCATTGCCTCCTTGGTTG 59.029 50.000 4.70 0.00 38.35 3.77
30 31 0.971386 CAAGCATTGCCTCCTTGGTT 59.029 50.000 4.70 0.00 40.39 3.67
31 32 2.662309 CAAGCATTGCCTCCTTGGT 58.338 52.632 4.70 0.00 40.39 3.67
70 71 9.320352 TCAAGCATAGATAGCGTTTACATAAAA 57.680 29.630 0.00 0.00 37.01 1.52
71 72 8.880878 TCAAGCATAGATAGCGTTTACATAAA 57.119 30.769 0.00 0.00 37.01 1.40
74 75 8.926710 GTTATCAAGCATAGATAGCGTTTACAT 58.073 33.333 0.00 0.00 37.01 2.29
75 76 7.923878 TGTTATCAAGCATAGATAGCGTTTACA 59.076 33.333 0.00 0.00 33.50 2.41
76 77 8.294341 TGTTATCAAGCATAGATAGCGTTTAC 57.706 34.615 0.00 0.00 33.50 2.01
77 78 8.761497 GTTGTTATCAAGCATAGATAGCGTTTA 58.239 33.333 0.00 0.00 33.50 2.01
78 79 7.279981 TGTTGTTATCAAGCATAGATAGCGTTT 59.720 33.333 0.00 0.00 33.50 3.60
79 80 6.761242 TGTTGTTATCAAGCATAGATAGCGTT 59.239 34.615 0.00 0.00 33.50 4.84
80 81 6.280643 TGTTGTTATCAAGCATAGATAGCGT 58.719 36.000 0.00 0.00 33.50 5.07
81 82 6.769608 TGTTGTTATCAAGCATAGATAGCG 57.230 37.500 0.00 0.00 33.50 4.26
82 83 9.390795 CAATTGTTGTTATCAAGCATAGATAGC 57.609 33.333 0.00 0.00 33.97 2.97
83 84 9.390795 GCAATTGTTGTTATCAAGCATAGATAG 57.609 33.333 7.40 0.00 33.97 2.08
84 85 9.123902 AGCAATTGTTGTTATCAAGCATAGATA 57.876 29.630 7.40 0.00 33.97 1.98
85 86 8.004087 AGCAATTGTTGTTATCAAGCATAGAT 57.996 30.769 7.40 0.00 33.97 1.98
86 87 7.395190 AGCAATTGTTGTTATCAAGCATAGA 57.605 32.000 7.40 0.00 33.97 1.98
87 88 9.740239 AATAGCAATTGTTGTTATCAAGCATAG 57.260 29.630 7.40 0.00 36.26 2.23
90 91 9.352784 GTAAATAGCAATTGTTGTTATCAAGCA 57.647 29.630 7.40 0.00 36.26 3.91
91 92 8.523464 CGTAAATAGCAATTGTTGTTATCAAGC 58.477 33.333 7.40 0.00 36.26 4.01
92 93 9.554724 ACGTAAATAGCAATTGTTGTTATCAAG 57.445 29.630 7.40 1.04 36.26 3.02
93 94 9.335891 CACGTAAATAGCAATTGTTGTTATCAA 57.664 29.630 7.40 0.00 36.26 2.57
94 95 7.483375 GCACGTAAATAGCAATTGTTGTTATCA 59.517 33.333 7.40 0.00 36.26 2.15
95 96 7.304622 CGCACGTAAATAGCAATTGTTGTTATC 60.305 37.037 7.40 2.45 36.26 1.75
96 97 6.467682 CGCACGTAAATAGCAATTGTTGTTAT 59.532 34.615 7.40 0.55 38.48 1.89
97 98 5.790988 CGCACGTAAATAGCAATTGTTGTTA 59.209 36.000 7.40 2.17 0.00 2.41
98 99 4.615121 CGCACGTAAATAGCAATTGTTGTT 59.385 37.500 7.40 2.63 0.00 2.83
99 100 4.083749 TCGCACGTAAATAGCAATTGTTGT 60.084 37.500 7.40 0.00 0.00 3.32
100 101 4.259734 GTCGCACGTAAATAGCAATTGTTG 59.740 41.667 7.40 0.00 0.00 3.33
101 102 4.083749 TGTCGCACGTAAATAGCAATTGTT 60.084 37.500 7.40 3.27 0.00 2.83
102 103 3.433957 TGTCGCACGTAAATAGCAATTGT 59.566 39.130 7.40 0.00 0.00 2.71
103 104 3.997276 TGTCGCACGTAAATAGCAATTG 58.003 40.909 0.00 0.00 0.00 2.32
104 105 4.875544 ATGTCGCACGTAAATAGCAATT 57.124 36.364 0.00 0.00 0.00 2.32
105 106 4.094294 ACAATGTCGCACGTAAATAGCAAT 59.906 37.500 0.00 0.00 0.00 3.56
106 107 3.433957 ACAATGTCGCACGTAAATAGCAA 59.566 39.130 0.00 0.00 0.00 3.91
107 108 2.997303 ACAATGTCGCACGTAAATAGCA 59.003 40.909 0.00 0.00 0.00 3.49
108 109 3.181524 ACACAATGTCGCACGTAAATAGC 60.182 43.478 0.00 0.00 0.00 2.97
109 110 4.565229 GACACAATGTCGCACGTAAATAG 58.435 43.478 0.00 0.00 37.67 1.73
110 111 4.571375 GACACAATGTCGCACGTAAATA 57.429 40.909 0.00 0.00 37.67 1.40
111 112 3.449322 GACACAATGTCGCACGTAAAT 57.551 42.857 0.00 0.00 37.67 1.40
112 113 2.934107 GACACAATGTCGCACGTAAA 57.066 45.000 0.00 0.00 37.67 2.01
121 122 1.067693 TCGACATGCGACACAATGTC 58.932 50.000 7.93 5.85 45.59 3.06
122 123 3.209266 TCGACATGCGACACAATGT 57.791 47.368 7.93 0.00 45.59 2.71
130 131 3.717959 TACATGCACGTCGACATGCGA 62.718 52.381 28.78 19.11 46.08 5.10
131 132 1.409982 TACATGCACGTCGACATGCG 61.410 55.000 28.78 19.02 46.08 4.73
132 133 0.930310 ATACATGCACGTCGACATGC 59.070 50.000 28.30 28.30 46.08 4.06
134 135 3.000041 ACAAATACATGCACGTCGACAT 59.000 40.909 17.16 0.00 0.00 3.06
135 136 2.409012 ACAAATACATGCACGTCGACA 58.591 42.857 17.16 0.00 0.00 4.35
136 137 4.505300 CATACAAATACATGCACGTCGAC 58.495 43.478 5.18 5.18 0.00 4.20
137 138 3.553917 CCATACAAATACATGCACGTCGA 59.446 43.478 0.00 0.00 0.00 4.20
138 139 3.553917 TCCATACAAATACATGCACGTCG 59.446 43.478 0.00 0.00 0.00 5.12
139 140 5.673337 ATCCATACAAATACATGCACGTC 57.327 39.130 0.00 0.00 0.00 4.34
140 141 6.094742 TCAAATCCATACAAATACATGCACGT 59.905 34.615 0.00 0.00 0.00 4.49
141 142 6.493978 TCAAATCCATACAAATACATGCACG 58.506 36.000 0.00 0.00 0.00 5.34
142 143 7.706159 TCTCAAATCCATACAAATACATGCAC 58.294 34.615 0.00 0.00 0.00 4.57
143 144 7.557358 ACTCTCAAATCCATACAAATACATGCA 59.443 33.333 0.00 0.00 0.00 3.96
144 145 7.934457 ACTCTCAAATCCATACAAATACATGC 58.066 34.615 0.00 0.00 0.00 4.06
145 146 8.562892 GGACTCTCAAATCCATACAAATACATG 58.437 37.037 0.00 0.00 34.87 3.21
146 147 7.442364 CGGACTCTCAAATCCATACAAATACAT 59.558 37.037 0.00 0.00 34.35 2.29
147 148 6.761242 CGGACTCTCAAATCCATACAAATACA 59.239 38.462 0.00 0.00 34.35 2.29
148 149 6.984474 TCGGACTCTCAAATCCATACAAATAC 59.016 38.462 0.00 0.00 34.35 1.89
149 150 7.119709 TCGGACTCTCAAATCCATACAAATA 57.880 36.000 0.00 0.00 34.35 1.40
150 151 5.989477 TCGGACTCTCAAATCCATACAAAT 58.011 37.500 0.00 0.00 34.35 2.32
151 152 5.414789 TCGGACTCTCAAATCCATACAAA 57.585 39.130 0.00 0.00 34.35 2.83
152 153 5.414789 TTCGGACTCTCAAATCCATACAA 57.585 39.130 0.00 0.00 34.35 2.41
153 154 5.614324 ATTCGGACTCTCAAATCCATACA 57.386 39.130 0.00 0.00 34.35 2.29
154 155 6.238484 CCAAATTCGGACTCTCAAATCCATAC 60.238 42.308 0.00 0.00 34.35 2.39
155 156 5.822519 CCAAATTCGGACTCTCAAATCCATA 59.177 40.000 0.00 0.00 34.35 2.74
156 157 4.641989 CCAAATTCGGACTCTCAAATCCAT 59.358 41.667 0.00 0.00 34.35 3.41
157 158 4.009675 CCAAATTCGGACTCTCAAATCCA 58.990 43.478 0.00 0.00 34.35 3.41
158 159 3.378427 CCCAAATTCGGACTCTCAAATCC 59.622 47.826 0.00 0.00 0.00 3.01
159 160 4.261801 TCCCAAATTCGGACTCTCAAATC 58.738 43.478 0.00 0.00 0.00 2.17
160 161 4.301072 TCCCAAATTCGGACTCTCAAAT 57.699 40.909 0.00 0.00 0.00 2.32
161 162 3.780804 TCCCAAATTCGGACTCTCAAA 57.219 42.857 0.00 0.00 0.00 2.69
162 163 5.104527 ACATATCCCAAATTCGGACTCTCAA 60.105 40.000 0.00 0.00 30.39 3.02
163 164 4.408921 ACATATCCCAAATTCGGACTCTCA 59.591 41.667 0.00 0.00 30.39 3.27
164 165 4.752101 CACATATCCCAAATTCGGACTCTC 59.248 45.833 0.00 0.00 30.39 3.20
165 166 4.444876 CCACATATCCCAAATTCGGACTCT 60.445 45.833 0.00 0.00 30.39 3.24
166 167 3.815401 CCACATATCCCAAATTCGGACTC 59.185 47.826 0.00 0.00 30.39 3.36
167 168 3.458118 TCCACATATCCCAAATTCGGACT 59.542 43.478 0.00 0.00 30.39 3.85
168 169 3.815809 TCCACATATCCCAAATTCGGAC 58.184 45.455 0.00 0.00 30.39 4.79
169 170 4.397420 CATCCACATATCCCAAATTCGGA 58.603 43.478 0.00 0.00 0.00 4.55
170 171 3.057315 GCATCCACATATCCCAAATTCGG 60.057 47.826 0.00 0.00 0.00 4.30
171 172 3.057315 GGCATCCACATATCCCAAATTCG 60.057 47.826 0.00 0.00 0.00 3.34
172 173 4.021719 CAGGCATCCACATATCCCAAATTC 60.022 45.833 0.00 0.00 0.00 2.17
173 174 3.899360 CAGGCATCCACATATCCCAAATT 59.101 43.478 0.00 0.00 0.00 1.82
174 175 3.140707 TCAGGCATCCACATATCCCAAAT 59.859 43.478 0.00 0.00 0.00 2.32
175 176 2.513317 TCAGGCATCCACATATCCCAAA 59.487 45.455 0.00 0.00 0.00 3.28
176 177 2.134354 TCAGGCATCCACATATCCCAA 58.866 47.619 0.00 0.00 0.00 4.12
177 178 1.818419 TCAGGCATCCACATATCCCA 58.182 50.000 0.00 0.00 0.00 4.37
178 179 2.957402 TTCAGGCATCCACATATCCC 57.043 50.000 0.00 0.00 0.00 3.85
179 180 3.152341 CCTTTCAGGCATCCACATATCC 58.848 50.000 0.00 0.00 0.00 2.59
180 181 4.090761 TCCTTTCAGGCATCCACATATC 57.909 45.455 0.00 0.00 34.61 1.63
181 182 4.524802 TTCCTTTCAGGCATCCACATAT 57.475 40.909 0.00 0.00 34.61 1.78
182 183 4.314522 TTTCCTTTCAGGCATCCACATA 57.685 40.909 0.00 0.00 34.61 2.29
183 184 2.905415 TTCCTTTCAGGCATCCACAT 57.095 45.000 0.00 0.00 34.61 3.21
184 185 2.673775 TTTCCTTTCAGGCATCCACA 57.326 45.000 0.00 0.00 34.61 4.17
185 186 4.889409 TCATATTTCCTTTCAGGCATCCAC 59.111 41.667 0.00 0.00 34.61 4.02
186 187 5.128033 TCATATTTCCTTTCAGGCATCCA 57.872 39.130 0.00 0.00 34.61 3.41
187 188 4.522022 CCTCATATTTCCTTTCAGGCATCC 59.478 45.833 0.00 0.00 34.61 3.51
188 189 4.522022 CCCTCATATTTCCTTTCAGGCATC 59.478 45.833 0.00 0.00 34.61 3.91
189 190 4.477249 CCCTCATATTTCCTTTCAGGCAT 58.523 43.478 0.00 0.00 34.61 4.40
190 191 3.902218 CCCTCATATTTCCTTTCAGGCA 58.098 45.455 0.00 0.00 34.61 4.75
191 192 2.625314 GCCCTCATATTTCCTTTCAGGC 59.375 50.000 0.00 0.00 34.61 4.85
192 193 3.117360 AGGCCCTCATATTTCCTTTCAGG 60.117 47.826 0.00 0.00 36.46 3.86
193 194 3.887716 CAGGCCCTCATATTTCCTTTCAG 59.112 47.826 0.00 0.00 0.00 3.02
194 195 3.269381 ACAGGCCCTCATATTTCCTTTCA 59.731 43.478 0.00 0.00 0.00 2.69
195 196 3.885901 GACAGGCCCTCATATTTCCTTTC 59.114 47.826 0.00 0.00 0.00 2.62
196 197 3.373110 GGACAGGCCCTCATATTTCCTTT 60.373 47.826 0.00 0.00 0.00 3.11
197 198 2.175715 GGACAGGCCCTCATATTTCCTT 59.824 50.000 0.00 0.00 0.00 3.36
198 199 1.777272 GGACAGGCCCTCATATTTCCT 59.223 52.381 0.00 0.00 0.00 3.36
199 200 1.543429 CGGACAGGCCCTCATATTTCC 60.543 57.143 0.00 0.00 0.00 3.13
200 201 1.543429 CCGGACAGGCCCTCATATTTC 60.543 57.143 0.00 0.00 0.00 2.17
201 202 0.474184 CCGGACAGGCCCTCATATTT 59.526 55.000 0.00 0.00 0.00 1.40
202 203 0.399949 TCCGGACAGGCCCTCATATT 60.400 55.000 0.00 0.00 40.77 1.28
203 204 1.122019 GTCCGGACAGGCCCTCATAT 61.122 60.000 29.75 0.00 40.77 1.78
204 205 1.760875 GTCCGGACAGGCCCTCATA 60.761 63.158 29.75 0.00 40.77 2.15
205 206 3.083997 GTCCGGACAGGCCCTCAT 61.084 66.667 29.75 0.00 40.77 2.90
245 246 4.817063 CTGAAACGCATGCGCCCG 62.817 66.667 38.15 19.95 44.19 6.13
246 247 4.481112 CCTGAAACGCATGCGCCC 62.481 66.667 38.15 26.20 44.19 6.13
247 248 4.481112 CCCTGAAACGCATGCGCC 62.481 66.667 38.15 26.54 44.19 6.53
248 249 4.481112 CCCCTGAAACGCATGCGC 62.481 66.667 38.15 23.14 44.19 6.09
249 250 4.481112 GCCCCTGAAACGCATGCG 62.481 66.667 36.79 36.79 46.03 4.73
250 251 4.133796 GGCCCCTGAAACGCATGC 62.134 66.667 7.91 7.91 0.00 4.06
251 252 3.814268 CGGCCCCTGAAACGCATG 61.814 66.667 0.00 0.00 0.00 4.06
254 255 4.796495 ATCCGGCCCCTGAAACGC 62.796 66.667 0.00 0.00 0.00 4.84
255 256 1.677633 AAATCCGGCCCCTGAAACG 60.678 57.895 0.00 0.00 0.00 3.60
256 257 1.890174 CAAATCCGGCCCCTGAAAC 59.110 57.895 0.00 0.00 0.00 2.78
257 258 1.981853 GCAAATCCGGCCCCTGAAA 60.982 57.895 0.00 0.00 0.00 2.69
258 259 2.362375 GCAAATCCGGCCCCTGAA 60.362 61.111 0.00 0.00 0.00 3.02
259 260 4.440829 GGCAAATCCGGCCCCTGA 62.441 66.667 0.00 0.00 45.87 3.86
265 266 2.885113 GGACTTGGCAAATCCGGC 59.115 61.111 12.45 0.00 37.80 6.13
275 276 0.811616 GCATCTACAGCCGGACTTGG 60.812 60.000 5.05 0.00 0.00 3.61
276 277 0.176680 AGCATCTACAGCCGGACTTG 59.823 55.000 5.05 1.91 0.00 3.16
277 278 0.461961 GAGCATCTACAGCCGGACTT 59.538 55.000 5.05 0.00 0.00 3.01
278 279 2.119886 GAGCATCTACAGCCGGACT 58.880 57.895 5.05 0.00 0.00 3.85
279 280 4.740235 GAGCATCTACAGCCGGAC 57.260 61.111 5.05 0.00 0.00 4.79
291 292 7.147863 TGTTATGGAAAACATTGCATAGAGCAT 60.148 33.333 0.00 0.00 44.09 3.79
292 293 6.152492 TGTTATGGAAAACATTGCATAGAGCA 59.848 34.615 0.00 0.00 45.57 4.26
293 294 6.563422 TGTTATGGAAAACATTGCATAGAGC 58.437 36.000 0.00 0.00 41.03 4.09
304 305 7.044181 TGTGAGCAAAAATGTTATGGAAAACA 58.956 30.769 0.00 0.00 43.16 2.83
305 306 7.475771 TGTGAGCAAAAATGTTATGGAAAAC 57.524 32.000 0.00 0.00 0.00 2.43
306 307 9.770097 TTATGTGAGCAAAAATGTTATGGAAAA 57.230 25.926 0.00 0.00 0.00 2.29
307 308 9.421806 CTTATGTGAGCAAAAATGTTATGGAAA 57.578 29.630 0.00 0.00 0.00 3.13
308 309 8.584157 ACTTATGTGAGCAAAAATGTTATGGAA 58.416 29.630 0.00 0.00 0.00 3.53
309 310 8.121305 ACTTATGTGAGCAAAAATGTTATGGA 57.879 30.769 0.00 0.00 0.00 3.41
313 314 9.352784 GCAATACTTATGTGAGCAAAAATGTTA 57.647 29.630 0.00 0.00 0.00 2.41
314 315 7.062138 CGCAATACTTATGTGAGCAAAAATGTT 59.938 33.333 0.00 0.00 0.00 2.71
315 316 6.527722 CGCAATACTTATGTGAGCAAAAATGT 59.472 34.615 0.00 0.00 0.00 2.71
316 317 6.506827 GCGCAATACTTATGTGAGCAAAAATG 60.507 38.462 0.30 0.00 37.90 2.32
317 318 5.516339 GCGCAATACTTATGTGAGCAAAAAT 59.484 36.000 0.30 0.00 37.90 1.82
318 319 4.856487 GCGCAATACTTATGTGAGCAAAAA 59.144 37.500 0.30 0.00 37.90 1.94
319 320 4.083057 TGCGCAATACTTATGTGAGCAAAA 60.083 37.500 8.16 0.00 43.60 2.44
320 321 3.438434 TGCGCAATACTTATGTGAGCAAA 59.562 39.130 8.16 0.00 43.60 3.68
321 322 3.006247 TGCGCAATACTTATGTGAGCAA 58.994 40.909 8.16 0.00 43.60 3.91
322 323 2.626840 TGCGCAATACTTATGTGAGCA 58.373 42.857 8.16 0.00 44.21 4.26
323 324 3.063997 AGTTGCGCAATACTTATGTGAGC 59.936 43.478 27.79 8.29 38.40 4.26
324 325 4.864916 AGTTGCGCAATACTTATGTGAG 57.135 40.909 27.79 0.00 0.00 3.51
325 326 5.872617 AGTTAGTTGCGCAATACTTATGTGA 59.127 36.000 27.79 0.78 0.00 3.58
326 327 6.106877 AGTTAGTTGCGCAATACTTATGTG 57.893 37.500 27.79 0.00 0.00 3.21
327 328 5.293569 GGAGTTAGTTGCGCAATACTTATGT 59.706 40.000 27.79 8.49 0.00 2.29
338 339 2.888594 TGACATAGGAGTTAGTTGCGC 58.111 47.619 0.00 0.00 0.00 6.09
340 341 7.559590 AATCAATGACATAGGAGTTAGTTGC 57.440 36.000 0.00 0.00 0.00 4.17
343 344 9.314321 CGTAAAATCAATGACATAGGAGTTAGT 57.686 33.333 3.95 0.00 0.00 2.24
348 349 5.462068 TCGCGTAAAATCAATGACATAGGAG 59.538 40.000 5.77 0.00 0.00 3.69
394 399 8.188799 CACATCTAAATGACTCAATCAAGCATT 58.811 33.333 0.00 0.00 41.93 3.56
397 402 5.970023 GCACATCTAAATGACTCAATCAAGC 59.030 40.000 0.00 0.00 41.93 4.01
398 403 7.080353 TGCACATCTAAATGACTCAATCAAG 57.920 36.000 0.00 0.00 41.93 3.02
433 438 7.066284 GGGTCTGTCTACGTACTTTTAGATGTA 59.934 40.741 0.00 0.00 0.00 2.29
441 446 5.393896 GCATAAGGGTCTGTCTACGTACTTT 60.394 44.000 0.00 0.00 0.00 2.66
447 452 1.269102 CCGCATAAGGGTCTGTCTACG 60.269 57.143 0.00 0.00 0.00 3.51
448 453 1.755380 ACCGCATAAGGGTCTGTCTAC 59.245 52.381 0.00 0.00 29.94 2.59
456 461 0.981183 TCTTGACACCGCATAAGGGT 59.019 50.000 0.00 0.00 38.65 4.34
457 462 1.369625 GTCTTGACACCGCATAAGGG 58.630 55.000 0.00 0.00 35.02 3.95
458 463 1.369625 GGTCTTGACACCGCATAAGG 58.630 55.000 3.08 0.00 37.30 2.69
459 464 1.369625 GGGTCTTGACACCGCATAAG 58.630 55.000 3.08 0.00 37.30 1.73
460 465 0.390603 CGGGTCTTGACACCGCATAA 60.391 55.000 14.26 0.00 41.23 1.90
461 466 1.216977 CGGGTCTTGACACCGCATA 59.783 57.895 14.26 0.00 41.23 3.14
462 467 2.047274 CGGGTCTTGACACCGCAT 60.047 61.111 14.26 0.00 41.23 4.73
494 499 4.334203 GGGTCAATTCACGTATATGTGCAA 59.666 41.667 18.58 13.91 39.73 4.08
499 504 3.064207 CCCGGGTCAATTCACGTATATG 58.936 50.000 14.18 0.00 31.79 1.78
519 527 0.529119 ACGTATTTGGATCGCGGTCC 60.529 55.000 31.65 31.65 38.81 4.46
574 587 1.569479 GCCTGCTCTGTTTGACGTCC 61.569 60.000 14.12 0.00 0.00 4.79
602 615 3.096092 GCCAATCCAACTTTACCATGGA 58.904 45.455 21.47 0.00 46.60 3.41
636 653 3.116531 CTTCGTTTCGCCCGGACC 61.117 66.667 0.73 0.00 0.00 4.46
655 672 1.463831 TCGAGACACGACAACTAGAGC 59.536 52.381 0.00 0.00 46.45 4.09
849 987 4.219944 AGTTGAGGTGCTATAAACTGACGA 59.780 41.667 0.00 0.00 30.17 4.20
871 2253 3.793144 GGCAGCTCGCGTTTGGAG 61.793 66.667 5.77 0.00 43.84 3.86
908 2333 4.762251 CCCTTCCGAATGAAAGTCTTTCTT 59.238 41.667 22.69 15.41 40.32 2.52
917 2342 1.950484 GCTCTGCCCTTCCGAATGAAA 60.950 52.381 0.00 0.00 31.06 2.69
974 2443 0.739112 GCTCTCTCGTTCTTGCTGGG 60.739 60.000 0.00 0.00 0.00 4.45
1078 2553 2.284754 TTGGCTTATGCAGTGGAACA 57.715 45.000 2.72 0.00 41.91 3.18
1079 2554 2.493278 ACATTGGCTTATGCAGTGGAAC 59.507 45.455 2.72 0.00 41.91 3.62
1080 2555 2.806434 ACATTGGCTTATGCAGTGGAA 58.194 42.857 2.72 0.00 41.91 3.53
1097 2597 2.821969 AGCAAATCGAAGCCAAGAACAT 59.178 40.909 0.00 0.00 0.00 2.71
1182 2700 1.153706 CCACCACATACGGGTCGAC 60.154 63.158 7.13 7.13 36.19 4.20
1286 2822 0.736672 CGAGACGACTCAGACGAGGA 60.737 60.000 14.99 0.00 44.17 3.71
1287 2823 0.736672 TCGAGACGACTCAGACGAGG 60.737 60.000 14.99 0.00 44.17 4.63
1288 2824 2.739407 TCGAGACGACTCAGACGAG 58.261 57.895 14.99 0.00 45.49 4.18
1289 2825 4.981415 TCGAGACGACTCAGACGA 57.019 55.556 14.99 4.18 42.72 4.20
1305 2841 2.430248 ATATTTTGTGGACCGGGGTC 57.570 50.000 6.32 9.40 43.87 4.46
1326 2885 3.617669 CGACTGTTTCGTTGAGCAAAAT 58.382 40.909 0.00 0.00 43.24 1.82
1388 3095 4.356436 TGATCTGGAATCTGAAGACCTCA 58.644 43.478 0.00 0.00 0.00 3.86
1436 3143 2.479566 TGATCCGCAAGAAGAGCTTT 57.520 45.000 0.00 0.00 43.02 3.51
1462 3169 2.266055 CCCTGGAGAGGTTGTCGC 59.734 66.667 0.00 0.00 37.73 5.19
1470 3177 2.194460 GGAAGTCGTCCCTGGAGAG 58.806 63.158 0.00 0.00 41.10 3.20
1550 3263 7.398618 TCTTCAATTTACCATTCCAATTGGCTA 59.601 33.333 20.33 10.45 38.11 3.93
1554 3267 7.312154 TCGTCTTCAATTTACCATTCCAATTG 58.688 34.615 0.00 0.00 38.66 2.32
1560 3273 6.378582 TGCTTTCGTCTTCAATTTACCATTC 58.621 36.000 0.00 0.00 0.00 2.67
1562 3275 5.957842 TGCTTTCGTCTTCAATTTACCAT 57.042 34.783 0.00 0.00 0.00 3.55
1565 3278 7.479916 CAGATCTTGCTTTCGTCTTCAATTTAC 59.520 37.037 0.00 0.00 0.00 2.01
1566 3279 7.387673 TCAGATCTTGCTTTCGTCTTCAATTTA 59.612 33.333 0.00 0.00 0.00 1.40
1757 3484 1.234821 CGCCTGTCTTTACCTTTGCA 58.765 50.000 0.00 0.00 0.00 4.08
1773 3500 1.349234 AAATCAGAAAAATGCGCGCC 58.651 45.000 30.77 12.12 0.00 6.53
1784 3511 3.193267 GCCAGCCATGTACAAAATCAGAA 59.807 43.478 0.00 0.00 0.00 3.02
1786 3513 2.159198 GGCCAGCCATGTACAAAATCAG 60.159 50.000 3.12 0.00 35.81 2.90
1802 3529 2.641439 GATCGACAGAGGCTGGCCAG 62.641 65.000 29.34 29.34 35.82 4.85
1803 3530 2.685017 ATCGACAGAGGCTGGCCA 60.685 61.111 14.39 4.71 35.82 5.36
1804 3531 2.107953 GATCGACAGAGGCTGGCC 59.892 66.667 3.00 3.00 35.82 5.36
1806 3533 1.110442 AAGAGATCGACAGAGGCTGG 58.890 55.000 0.00 0.00 35.51 4.85
1807 3534 1.476085 ACAAGAGATCGACAGAGGCTG 59.524 52.381 0.00 0.00 37.52 4.85
1808 3535 1.476085 CACAAGAGATCGACAGAGGCT 59.524 52.381 0.00 0.00 0.00 4.58
1809 3536 1.470632 CCACAAGAGATCGACAGAGGC 60.471 57.143 0.00 0.00 0.00 4.70
1812 3539 2.796557 AGTCCACAAGAGATCGACAGA 58.203 47.619 0.00 0.00 0.00 3.41
1814 3541 3.440522 CACTAGTCCACAAGAGATCGACA 59.559 47.826 0.00 0.00 0.00 4.35
1816 3543 3.440522 CACACTAGTCCACAAGAGATCGA 59.559 47.826 0.00 0.00 0.00 3.59
1818 3545 4.461081 ACTCACACTAGTCCACAAGAGATC 59.539 45.833 0.00 0.00 0.00 2.75
1819 3546 4.411927 ACTCACACTAGTCCACAAGAGAT 58.588 43.478 0.00 0.00 0.00 2.75
1825 3561 3.562182 TCAGAACTCACACTAGTCCACA 58.438 45.455 0.00 0.00 0.00 4.17
1835 3571 3.118075 TCAACACCCAATCAGAACTCACA 60.118 43.478 0.00 0.00 0.00 3.58
1843 3579 0.819582 GGGCATCAACACCCAATCAG 59.180 55.000 0.00 0.00 46.22 2.90
1851 3587 1.973760 TGGCAATGGGCATCAACAC 59.026 52.632 0.00 0.00 45.76 3.32
1923 3659 1.609501 CCGGACCCTCAGACCTTCA 60.610 63.158 0.00 0.00 0.00 3.02
2041 3791 6.638096 TGCAGCATATATACACTTTTGCAT 57.362 33.333 0.00 0.00 34.48 3.96
2043 3793 7.935338 AAATGCAGCATATATACACTTTTGC 57.065 32.000 8.75 0.00 0.00 3.68
2055 3805 6.461110 AAAGAGCTACAAAATGCAGCATAT 57.539 33.333 8.75 0.00 39.19 1.78
2074 3824 6.775142 AGCTGCTCTGACTATACATCTAAAGA 59.225 38.462 0.00 0.00 0.00 2.52
2193 3971 8.842280 CCTTGTACAAACTACCAAGTTATCAAA 58.158 33.333 10.03 0.00 45.37 2.69
2220 3998 3.531262 AACTTCGTAAATGAACGCACC 57.469 42.857 0.00 0.00 42.56 5.01
2231 4009 4.067972 AGCTGTCAGGAAAACTTCGTAA 57.932 40.909 1.14 0.00 0.00 3.18
2247 4037 1.153524 TGCCCCATGTTGAAGCTGT 59.846 52.632 0.00 0.00 0.00 4.40
2252 4042 0.482446 AAGGAGTGCCCCATGTTGAA 59.518 50.000 0.00 0.00 34.66 2.69
2258 4048 0.552848 CCATGTAAGGAGTGCCCCAT 59.447 55.000 0.00 0.00 34.66 4.00
2286 4076 5.886474 TGTGGTACATAAAACACTTGGTCAA 59.114 36.000 0.00 0.00 44.52 3.18
2334 4452 5.072872 AGTCCTCCAATGCAGCTAGATTATT 59.927 40.000 0.00 0.00 0.00 1.40
2349 4467 5.305585 GTGAACAGAATTACAGTCCTCCAA 58.694 41.667 0.00 0.00 0.00 3.53
2364 4482 3.133362 AGAAACGTACAAGGGTGAACAGA 59.867 43.478 0.00 0.00 0.00 3.41
2365 4483 3.463944 AGAAACGTACAAGGGTGAACAG 58.536 45.455 0.00 0.00 0.00 3.16
2401 4521 3.316573 CTCCCTGGGAACGGAGTGC 62.317 68.421 17.81 0.00 45.00 4.40
2513 9561 1.619827 CCATCCAACATGTTGCAACCT 59.380 47.619 29.42 14.50 39.16 3.50
2535 9583 5.350091 TCAACGTCGATTTGCATCTATTCAA 59.650 36.000 0.00 0.00 0.00 2.69
2571 9641 7.124298 CGGGGGTTGAGAGATGATAATCTTATA 59.876 40.741 0.00 0.00 0.00 0.98
2572 9642 6.070538 CGGGGGTTGAGAGATGATAATCTTAT 60.071 42.308 0.00 0.00 0.00 1.73
2573 9643 5.246203 CGGGGGTTGAGAGATGATAATCTTA 59.754 44.000 0.00 0.00 0.00 2.10
2634 10328 5.703978 TCATTGATTTTGTCGAACATGGT 57.296 34.783 0.00 0.00 0.00 3.55
2650 10344 4.823442 AGCTGACACAAACAGAATCATTGA 59.177 37.500 0.00 0.00 37.54 2.57
2663 10376 4.065088 GGTTGAAGACATAGCTGACACAA 58.935 43.478 0.00 0.00 0.00 3.33
2675 10388 7.362574 CCAAGTAGTTTTCTTTGGTTGAAGACA 60.363 37.037 0.00 0.00 35.50 3.41
2678 10391 6.127451 ACCCAAGTAGTTTTCTTTGGTTGAAG 60.127 38.462 1.91 0.00 37.57 3.02
2682 10395 4.337274 CGACCCAAGTAGTTTTCTTTGGTT 59.663 41.667 0.00 0.00 39.79 3.67
2688 10401 2.289506 GCTCCGACCCAAGTAGTTTTCT 60.290 50.000 0.00 0.00 0.00 2.52
2771 10484 1.061967 ACGAATACATACCCCTCCCCA 60.062 52.381 0.00 0.00 0.00 4.96
2774 10487 4.202284 TGCTAAACGAATACATACCCCTCC 60.202 45.833 0.00 0.00 0.00 4.30
2827 10540 5.909054 GCAGTTTTACCAACCTAACGTAAAC 59.091 40.000 0.00 0.00 33.04 2.01
2845 10569 8.208718 TCAAATAAGTAATCGCATAGCAGTTT 57.791 30.769 0.00 0.00 0.00 2.66
2848 10572 8.122330 TGTTTCAAATAAGTAATCGCATAGCAG 58.878 33.333 0.00 0.00 0.00 4.24
2849 10573 7.908082 GTGTTTCAAATAAGTAATCGCATAGCA 59.092 33.333 0.00 0.00 0.00 3.49
2908 10632 4.436050 CGAAGATTGGTGATTGGTTTCTCG 60.436 45.833 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.