Multiple sequence alignment - TraesCS3D01G353500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G353500 chr3D 100.000 6168 0 0 926 7093 464162323 464168490 0.000000e+00 11391.0
1 TraesCS3D01G353500 chr3D 100.000 696 0 0 1 696 464161398 464162093 0.000000e+00 1286.0
2 TraesCS3D01G353500 chr3D 87.990 408 37 9 3462 3866 579686894 579687292 8.330000e-129 472.0
3 TraesCS3D01G353500 chr3D 88.800 125 12 2 5420 5544 552666457 552666335 1.230000e-32 152.0
4 TraesCS3D01G353500 chr3B 94.064 4734 179 43 2403 7078 617430479 617435168 0.000000e+00 7092.0
5 TraesCS3D01G353500 chr3B 92.757 1491 67 14 926 2397 617428947 617430415 0.000000e+00 2117.0
6 TraesCS3D01G353500 chr3B 88.210 229 8 8 198 410 617428244 617428469 9.130000e-64 255.0
7 TraesCS3D01G353500 chr3B 100.000 29 0 0 668 696 617428894 617428922 4.000000e-03 54.7
8 TraesCS3D01G353500 chr3A 94.514 2406 94 21 4684 7075 607110376 607112757 0.000000e+00 3677.0
9 TraesCS3D01G353500 chr3A 95.020 1506 36 16 2828 4318 607108181 607109662 0.000000e+00 2329.0
10 TraesCS3D01G353500 chr3A 94.607 1057 51 5 926 1981 607106250 607107301 0.000000e+00 1631.0
11 TraesCS3D01G353500 chr3A 92.857 700 18 5 2138 2829 607107391 607108066 0.000000e+00 987.0
12 TraesCS3D01G353500 chr3A 93.955 397 6 9 274 668 607105828 607106208 1.030000e-162 584.0
13 TraesCS3D01G353500 chr3A 88.177 406 38 7 3462 3866 714787289 714787685 6.440000e-130 475.0
14 TraesCS3D01G353500 chr3A 95.812 191 8 0 4508 4698 607109736 607109926 6.910000e-80 309.0
15 TraesCS3D01G353500 chr3A 96.154 78 2 1 2029 2106 607107311 607107387 7.470000e-25 126.0
16 TraesCS3D01G353500 chr3A 83.036 112 12 3 2585 2696 662081444 662081548 2.110000e-15 95.3
17 TraesCS3D01G353500 chr5D 87.614 549 45 17 3492 4033 527390342 527389810 3.640000e-172 616.0
18 TraesCS3D01G353500 chr6B 88.054 519 36 16 3504 4013 649697921 649697420 6.130000e-165 592.0
19 TraesCS3D01G353500 chr6B 87.189 523 39 15 3504 4013 649646162 649645655 2.870000e-158 569.0
20 TraesCS3D01G353500 chr1D 88.452 407 36 8 3462 3866 64335108 64335505 1.380000e-131 481.0
21 TraesCS3D01G353500 chr1D 88.288 222 19 4 4823 5044 416535700 416535486 7.060000e-65 259.0
22 TraesCS3D01G353500 chr1D 93.069 101 6 1 4823 4922 416535850 416535750 5.730000e-31 147.0
23 TraesCS3D01G353500 chr7D 88.206 407 37 8 3462 3866 600062128 600062525 6.440000e-130 475.0
24 TraesCS3D01G353500 chr4B 87.500 400 34 6 3832 4229 81930388 81930003 1.400000e-121 448.0
25 TraesCS3D01G353500 chr1B 87.000 400 36 6 3832 4229 169950128 169949743 3.040000e-118 436.0
26 TraesCS3D01G353500 chr1B 91.099 191 14 3 4030 4219 589516919 589516731 9.130000e-64 255.0
27 TraesCS3D01G353500 chr2D 89.796 343 26 3 3858 4200 47624367 47624034 1.410000e-116 431.0
28 TraesCS3D01G353500 chr2D 87.838 222 20 2 4823 5044 34674942 34674728 3.280000e-63 254.0
29 TraesCS3D01G353500 chr2D 89.600 125 12 1 5420 5544 512811972 512812095 2.650000e-34 158.0
30 TraesCS3D01G353500 chr1A 87.166 374 29 5 3832 4205 115559783 115559429 2.380000e-109 407.0
31 TraesCS3D01G353500 chr1A 85.561 374 29 9 3832 4202 137931359 137931710 1.120000e-97 368.0
32 TraesCS3D01G353500 chr1A 88.739 222 18 6 4823 5044 513849977 513849763 1.520000e-66 265.0
33 TraesCS3D01G353500 chr1A 94.017 117 6 1 5417 5533 137931709 137931824 7.310000e-40 176.0
34 TraesCS3D01G353500 chr1A 90.625 128 10 2 5417 5544 115559433 115559308 1.220000e-37 169.0
35 TraesCS3D01G353500 chr4A 89.744 195 14 3 4030 4219 657242877 657242684 1.980000e-60 244.0
36 TraesCS3D01G353500 chr5B 87.387 222 14 3 4823 5044 618773467 618773674 7.110000e-60 243.0
37 TraesCS3D01G353500 chr5B 87.387 222 14 3 4823 5044 663637455 663637248 7.110000e-60 243.0
38 TraesCS3D01G353500 chr7A 90.909 154 8 1 4823 4976 47537520 47537373 1.210000e-47 202.0
39 TraesCS3D01G353500 chr7A 91.935 124 9 1 5417 5540 690955420 690955298 9.460000e-39 172.0
40 TraesCS3D01G353500 chr2A 83.784 222 16 3 4823 5044 611737067 611736866 7.260000e-45 193.0
41 TraesCS3D01G353500 chr6D 90.323 124 11 1 5417 5540 84292358 84292236 2.050000e-35 161.0
42 TraesCS3D01G353500 chr2B 88.800 125 13 1 5420 5544 603172794 603172917 1.230000e-32 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G353500 chr3D 464161398 464168490 7092 False 6338.500000 11391 100.000000 1 7093 2 chr3D.!!$F2 7092
1 TraesCS3D01G353500 chr3B 617428244 617435168 6924 False 2379.675000 7092 93.757750 198 7078 4 chr3B.!!$F1 6880
2 TraesCS3D01G353500 chr3A 607105828 607112757 6929 False 1377.571429 3677 94.702714 274 7075 7 chr3A.!!$F3 6801
3 TraesCS3D01G353500 chr5D 527389810 527390342 532 True 616.000000 616 87.614000 3492 4033 1 chr5D.!!$R1 541
4 TraesCS3D01G353500 chr6B 649697420 649697921 501 True 592.000000 592 88.054000 3504 4013 1 chr6B.!!$R2 509
5 TraesCS3D01G353500 chr6B 649645655 649646162 507 True 569.000000 569 87.189000 3504 4013 1 chr6B.!!$R1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.032540 AAACGAACGTCTAAGCCGGT 59.967 50.000 1.90 0.0 0.00 5.28 F
104 105 0.179142 GAACGTCTAAGCCGGTCCTC 60.179 60.000 1.90 0.0 36.05 3.71 F
178 179 0.179215 GCGAACGCAGGTGATTTGAG 60.179 55.000 14.26 0.0 41.49 3.02 F
993 1178 0.417437 TTCTCCTGGTGATGAGGGGA 59.583 55.000 0.00 0.0 38.42 4.81 F
1906 2093 1.593006 CCGATTAGTTGTGCTTAGGCG 59.407 52.381 0.00 0.0 42.25 5.52 F
2519 2789 1.164041 GGTGCACACTACACGGCTTT 61.164 55.000 20.43 0.0 38.98 3.51 F
3738 4153 2.368548 TCTGCACTCCTGACTTTGCTTA 59.631 45.455 0.00 0.0 35.91 3.09 F
5252 6151 0.037326 CTTCAGCGGCACAAGGTCTA 60.037 55.000 1.45 0.0 0.00 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1349 1534 0.811616 GCTGATAGAGCCACAACCCG 60.812 60.000 0.00 0.00 42.54 5.28 R
1889 2076 1.339631 TGCCGCCTAAGCACAACTAAT 60.340 47.619 0.00 0.00 39.83 1.73 R
2175 2363 0.108138 GCCCTCAGCTATGAACACGT 60.108 55.000 0.00 0.00 38.99 4.49 R
2203 2407 2.230025 CCAGTGTCACCACAAACAACAA 59.770 45.455 0.00 0.00 44.39 2.83 R
3608 4015 1.197721 CGGAAAGAATTCAGCTGCGTT 59.802 47.619 9.47 5.94 37.29 4.84 R
4321 4752 2.916934 TGGCAGGTCTAGTAAAATGGGT 59.083 45.455 0.00 0.00 0.00 4.51 R
5337 6236 0.107165 GTGCTATCAGGTTCCCCCAC 60.107 60.000 0.00 0.00 34.66 4.61 R
6805 7723 2.091541 GAAACCGCATTCATCCTCCAA 58.908 47.619 0.00 0.00 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.884900 GGATGGTTTCGGGTGTCG 58.115 61.111 0.00 0.00 40.90 4.35
18 19 1.743995 GGATGGTTTCGGGTGTCGG 60.744 63.158 0.00 0.00 39.77 4.79
19 20 2.359478 ATGGTTTCGGGTGTCGGC 60.359 61.111 0.00 0.00 39.77 5.54
20 21 3.912745 ATGGTTTCGGGTGTCGGCC 62.913 63.158 0.00 0.00 39.77 6.13
37 38 3.550992 CGCGTACGTGGCATGGTC 61.551 66.667 20.84 2.68 33.53 4.02
38 39 3.192922 GCGTACGTGGCATGGTCC 61.193 66.667 17.90 0.00 0.00 4.46
39 40 2.883730 CGTACGTGGCATGGTCCG 60.884 66.667 12.05 6.13 0.00 4.79
40 41 2.574929 GTACGTGGCATGGTCCGA 59.425 61.111 12.05 0.00 0.00 4.55
41 42 1.079681 GTACGTGGCATGGTCCGAA 60.080 57.895 12.05 0.00 0.00 4.30
42 43 1.079681 TACGTGGCATGGTCCGAAC 60.080 57.895 12.05 0.00 0.00 3.95
43 44 1.537814 TACGTGGCATGGTCCGAACT 61.538 55.000 12.05 0.00 0.00 3.01
44 45 2.100631 CGTGGCATGGTCCGAACTC 61.101 63.158 0.00 0.00 0.00 3.01
45 46 1.745489 GTGGCATGGTCCGAACTCC 60.745 63.158 0.00 0.00 0.00 3.85
46 47 2.124695 GGCATGGTCCGAACTCCC 60.125 66.667 0.00 0.00 0.00 4.30
47 48 2.511600 GCATGGTCCGAACTCCCG 60.512 66.667 0.00 0.00 0.00 5.14
48 49 2.511600 CATGGTCCGAACTCCCGC 60.512 66.667 0.00 0.00 0.00 6.13
49 50 3.000819 ATGGTCCGAACTCCCGCA 61.001 61.111 0.00 0.00 0.00 5.69
50 51 2.589157 ATGGTCCGAACTCCCGCAA 61.589 57.895 0.00 0.00 0.00 4.85
51 52 2.031465 GGTCCGAACTCCCGCAAA 59.969 61.111 0.00 0.00 0.00 3.68
52 53 2.033194 GGTCCGAACTCCCGCAAAG 61.033 63.158 0.00 0.00 0.00 2.77
53 54 2.358247 TCCGAACTCCCGCAAAGC 60.358 61.111 0.00 0.00 0.00 3.51
54 55 3.431725 CCGAACTCCCGCAAAGCC 61.432 66.667 0.00 0.00 0.00 4.35
55 56 3.431725 CGAACTCCCGCAAAGCCC 61.432 66.667 0.00 0.00 0.00 5.19
56 57 2.034221 GAACTCCCGCAAAGCCCT 59.966 61.111 0.00 0.00 0.00 5.19
57 58 2.034221 AACTCCCGCAAAGCCCTC 59.966 61.111 0.00 0.00 0.00 4.30
58 59 2.470938 GAACTCCCGCAAAGCCCTCT 62.471 60.000 0.00 0.00 0.00 3.69
59 60 2.437359 CTCCCGCAAAGCCCTCTG 60.437 66.667 0.00 0.00 0.00 3.35
60 61 3.984193 CTCCCGCAAAGCCCTCTGG 62.984 68.421 0.00 0.00 0.00 3.86
61 62 4.351054 CCCGCAAAGCCCTCTGGT 62.351 66.667 0.00 0.00 0.00 4.00
62 63 2.282462 CCGCAAAGCCCTCTGGTT 60.282 61.111 0.00 0.00 35.85 3.67
63 64 1.903404 CCGCAAAGCCCTCTGGTTT 60.903 57.895 0.00 0.00 45.20 3.27
66 67 4.198087 AAAGCCCTCTGGTTTGCC 57.802 55.556 0.00 0.00 42.81 4.52
67 68 1.543690 AAAGCCCTCTGGTTTGCCT 59.456 52.632 0.00 0.00 42.81 4.75
68 69 0.540597 AAAGCCCTCTGGTTTGCCTC 60.541 55.000 0.00 0.00 42.81 4.70
69 70 2.361737 GCCCTCTGGTTTGCCTCC 60.362 66.667 0.00 0.00 35.27 4.30
70 71 3.170362 CCCTCTGGTTTGCCTCCA 58.830 61.111 0.00 0.00 35.27 3.86
71 72 1.460255 CCCTCTGGTTTGCCTCCAA 59.540 57.895 0.00 0.00 34.35 3.53
72 73 0.040204 CCCTCTGGTTTGCCTCCAAT 59.960 55.000 0.00 0.00 34.35 3.16
73 74 1.550869 CCCTCTGGTTTGCCTCCAATT 60.551 52.381 0.00 0.00 34.35 2.32
74 75 2.250924 CCTCTGGTTTGCCTCCAATTT 58.749 47.619 0.00 0.00 34.35 1.82
75 76 2.028748 CCTCTGGTTTGCCTCCAATTTG 60.029 50.000 0.00 0.00 34.35 2.32
76 77 1.344114 TCTGGTTTGCCTCCAATTTGC 59.656 47.619 0.00 0.00 34.35 3.68
77 78 1.070445 CTGGTTTGCCTCCAATTTGCA 59.930 47.619 0.00 0.00 34.35 4.08
78 79 1.070445 TGGTTTGCCTCCAATTTGCAG 59.930 47.619 0.00 0.00 36.21 4.41
79 80 1.608801 GGTTTGCCTCCAATTTGCAGG 60.609 52.381 1.66 1.66 36.21 4.85
80 81 1.344114 GTTTGCCTCCAATTTGCAGGA 59.656 47.619 10.70 0.00 36.21 3.86
81 82 1.714541 TTGCCTCCAATTTGCAGGAA 58.285 45.000 10.70 0.00 36.21 3.36
82 83 1.714541 TGCCTCCAATTTGCAGGAAA 58.285 45.000 10.70 0.00 32.57 3.13
83 84 2.045524 TGCCTCCAATTTGCAGGAAAA 58.954 42.857 10.70 0.00 32.57 2.29
84 85 2.224257 TGCCTCCAATTTGCAGGAAAAC 60.224 45.455 10.70 0.00 32.57 2.43
85 86 2.676076 CCTCCAATTTGCAGGAAAACG 58.324 47.619 0.00 0.00 32.57 3.60
86 87 2.295909 CCTCCAATTTGCAGGAAAACGA 59.704 45.455 0.00 0.00 32.57 3.85
87 88 3.243704 CCTCCAATTTGCAGGAAAACGAA 60.244 43.478 0.00 0.00 32.57 3.85
88 89 3.712187 TCCAATTTGCAGGAAAACGAAC 58.288 40.909 0.00 0.00 0.00 3.95
89 90 2.470999 CCAATTTGCAGGAAAACGAACG 59.529 45.455 0.00 0.00 0.00 3.95
90 91 3.112580 CAATTTGCAGGAAAACGAACGT 58.887 40.909 0.00 0.00 0.00 3.99
91 92 2.461897 TTTGCAGGAAAACGAACGTC 57.538 45.000 0.00 0.00 0.00 4.34
92 93 1.658994 TTGCAGGAAAACGAACGTCT 58.341 45.000 0.00 0.00 0.00 4.18
93 94 2.512485 TGCAGGAAAACGAACGTCTA 57.488 45.000 0.00 0.00 0.00 2.59
94 95 2.823984 TGCAGGAAAACGAACGTCTAA 58.176 42.857 0.00 0.00 0.00 2.10
95 96 2.798283 TGCAGGAAAACGAACGTCTAAG 59.202 45.455 0.00 0.00 0.00 2.18
96 97 2.411160 GCAGGAAAACGAACGTCTAAGC 60.411 50.000 0.00 0.00 0.00 3.09
97 98 2.157085 CAGGAAAACGAACGTCTAAGCC 59.843 50.000 0.00 0.00 0.00 4.35
98 99 1.125566 GGAAAACGAACGTCTAAGCCG 59.874 52.381 0.00 0.00 0.00 5.52
99 100 1.125566 GAAAACGAACGTCTAAGCCGG 59.874 52.381 0.00 0.00 0.00 6.13
100 101 0.032540 AAACGAACGTCTAAGCCGGT 59.967 50.000 1.90 0.00 0.00 5.28
101 102 0.387750 AACGAACGTCTAAGCCGGTC 60.388 55.000 1.90 0.00 38.63 4.79
102 103 1.515736 CGAACGTCTAAGCCGGTCC 60.516 63.158 1.90 0.00 38.79 4.46
103 104 1.888736 GAACGTCTAAGCCGGTCCT 59.111 57.895 1.90 0.00 36.05 3.85
104 105 0.179142 GAACGTCTAAGCCGGTCCTC 60.179 60.000 1.90 0.00 36.05 3.71
105 106 1.930908 AACGTCTAAGCCGGTCCTCG 61.931 60.000 1.90 3.87 38.88 4.63
132 133 3.976793 TCGGTATCGTGTTAGATGACC 57.023 47.619 0.00 0.00 37.69 4.02
133 134 3.281158 TCGGTATCGTGTTAGATGACCA 58.719 45.455 0.00 0.00 37.69 4.02
134 135 3.695556 TCGGTATCGTGTTAGATGACCAA 59.304 43.478 0.00 0.00 37.69 3.67
135 136 4.158209 TCGGTATCGTGTTAGATGACCAAA 59.842 41.667 0.00 0.00 37.69 3.28
136 137 5.047847 CGGTATCGTGTTAGATGACCAAAT 58.952 41.667 0.00 0.00 31.08 2.32
137 138 6.039605 TCGGTATCGTGTTAGATGACCAAATA 59.960 38.462 0.00 0.00 37.69 1.40
138 139 6.143438 CGGTATCGTGTTAGATGACCAAATAC 59.857 42.308 0.00 0.00 31.08 1.89
139 140 6.143438 GGTATCGTGTTAGATGACCAAATACG 59.857 42.308 0.00 0.00 38.55 3.06
140 141 5.063180 TCGTGTTAGATGACCAAATACGT 57.937 39.130 0.00 0.00 38.40 3.57
141 142 5.097529 TCGTGTTAGATGACCAAATACGTC 58.902 41.667 0.00 0.00 38.40 4.34
142 143 4.266976 CGTGTTAGATGACCAAATACGTCC 59.733 45.833 0.00 0.00 34.38 4.79
143 144 4.266976 GTGTTAGATGACCAAATACGTCCG 59.733 45.833 0.00 0.00 0.00 4.79
144 145 4.158209 TGTTAGATGACCAAATACGTCCGA 59.842 41.667 0.00 0.00 0.00 4.55
145 146 3.880047 AGATGACCAAATACGTCCGAA 57.120 42.857 0.00 0.00 0.00 4.30
146 147 3.518590 AGATGACCAAATACGTCCGAAC 58.481 45.455 0.00 0.00 0.00 3.95
147 148 3.194968 AGATGACCAAATACGTCCGAACT 59.805 43.478 0.00 0.00 0.00 3.01
148 149 2.679450 TGACCAAATACGTCCGAACTG 58.321 47.619 0.00 0.00 0.00 3.16
149 150 1.392510 GACCAAATACGTCCGAACTGC 59.607 52.381 0.00 0.00 0.00 4.40
150 151 1.001633 ACCAAATACGTCCGAACTGCT 59.998 47.619 0.00 0.00 0.00 4.24
151 152 2.073816 CCAAATACGTCCGAACTGCTT 58.926 47.619 0.00 0.00 0.00 3.91
152 153 2.159707 CCAAATACGTCCGAACTGCTTG 60.160 50.000 0.00 0.00 0.00 4.01
153 154 1.722011 AATACGTCCGAACTGCTTGG 58.278 50.000 0.00 0.00 0.00 3.61
154 155 0.606604 ATACGTCCGAACTGCTTGGT 59.393 50.000 0.00 0.00 0.00 3.67
155 156 0.390124 TACGTCCGAACTGCTTGGTT 59.610 50.000 0.00 0.00 0.00 3.67
156 157 0.878961 ACGTCCGAACTGCTTGGTTC 60.879 55.000 0.00 7.40 41.31 3.62
157 158 0.878523 CGTCCGAACTGCTTGGTTCA 60.879 55.000 14.45 0.00 43.92 3.18
158 159 0.868406 GTCCGAACTGCTTGGTTCAG 59.132 55.000 14.45 6.63 43.92 3.02
159 160 0.250295 TCCGAACTGCTTGGTTCAGG 60.250 55.000 14.45 14.69 43.92 3.86
160 161 1.576421 CGAACTGCTTGGTTCAGGC 59.424 57.895 14.45 0.00 43.92 4.85
161 162 1.576421 GAACTGCTTGGTTCAGGCG 59.424 57.895 11.02 0.00 43.40 5.52
162 163 0.884704 GAACTGCTTGGTTCAGGCGA 60.885 55.000 11.02 0.00 43.40 5.54
163 164 0.465460 AACTGCTTGGTTCAGGCGAA 60.465 50.000 0.00 0.00 39.36 4.70
170 171 2.665185 GTTCAGGCGAACGCAGGT 60.665 61.111 20.16 2.12 42.05 4.00
171 172 2.664851 TTCAGGCGAACGCAGGTG 60.665 61.111 20.16 13.63 44.11 4.00
172 173 3.158537 TTCAGGCGAACGCAGGTGA 62.159 57.895 20.16 15.47 44.11 4.02
173 174 2.434884 CAGGCGAACGCAGGTGAT 60.435 61.111 20.16 0.00 44.11 3.06
174 175 2.034879 CAGGCGAACGCAGGTGATT 61.035 57.895 20.16 0.00 44.11 2.57
175 176 1.302511 AGGCGAACGCAGGTGATTT 60.303 52.632 20.16 0.00 44.11 2.17
176 177 1.154225 GGCGAACGCAGGTGATTTG 60.154 57.895 20.16 0.00 44.11 2.32
177 178 1.573829 GGCGAACGCAGGTGATTTGA 61.574 55.000 20.16 0.00 44.11 2.69
178 179 0.179215 GCGAACGCAGGTGATTTGAG 60.179 55.000 14.26 0.00 41.49 3.02
179 180 1.428448 CGAACGCAGGTGATTTGAGA 58.572 50.000 0.00 0.00 0.00 3.27
180 181 1.391485 CGAACGCAGGTGATTTGAGAG 59.609 52.381 0.00 0.00 0.00 3.20
181 182 2.417719 GAACGCAGGTGATTTGAGAGT 58.582 47.619 0.00 0.00 0.00 3.24
182 183 2.086054 ACGCAGGTGATTTGAGAGTC 57.914 50.000 0.00 0.00 0.00 3.36
183 184 1.338200 ACGCAGGTGATTTGAGAGTCC 60.338 52.381 0.00 0.00 0.00 3.85
184 185 1.338105 CGCAGGTGATTTGAGAGTCCA 60.338 52.381 0.00 0.00 0.00 4.02
185 186 2.679059 CGCAGGTGATTTGAGAGTCCAT 60.679 50.000 0.00 0.00 0.00 3.41
186 187 3.430790 CGCAGGTGATTTGAGAGTCCATA 60.431 47.826 0.00 0.00 0.00 2.74
187 188 4.712476 GCAGGTGATTTGAGAGTCCATAT 58.288 43.478 0.00 0.00 0.00 1.78
188 189 5.128919 GCAGGTGATTTGAGAGTCCATATT 58.871 41.667 0.00 0.00 0.00 1.28
189 190 5.008415 GCAGGTGATTTGAGAGTCCATATTG 59.992 44.000 0.00 0.00 0.00 1.90
190 191 6.351711 CAGGTGATTTGAGAGTCCATATTGA 58.648 40.000 0.00 0.00 0.00 2.57
191 192 6.482641 CAGGTGATTTGAGAGTCCATATTGAG 59.517 42.308 0.00 0.00 0.00 3.02
192 193 6.385176 AGGTGATTTGAGAGTCCATATTGAGA 59.615 38.462 0.00 0.00 0.00 3.27
193 194 7.050377 GGTGATTTGAGAGTCCATATTGAGAA 58.950 38.462 0.00 0.00 0.00 2.87
194 195 7.718753 GGTGATTTGAGAGTCCATATTGAGAAT 59.281 37.037 0.00 0.00 0.00 2.40
195 196 8.557864 GTGATTTGAGAGTCCATATTGAGAATG 58.442 37.037 0.00 0.00 0.00 2.67
196 197 8.270030 TGATTTGAGAGTCCATATTGAGAATGT 58.730 33.333 0.00 0.00 0.00 2.71
222 223 4.530094 TTTCTTTGTACACAAGCTCACG 57.470 40.909 0.00 0.00 37.15 4.35
263 264 1.202557 AGTTGTAACAGAAACCCGCGA 60.203 47.619 8.23 0.00 0.00 5.87
278 279 1.226746 CGCGACCCTTTTCCATATCC 58.773 55.000 0.00 0.00 0.00 2.59
433 450 4.163427 TCTCTCCTCTCCATCAACAACTT 58.837 43.478 0.00 0.00 0.00 2.66
551 569 3.157949 CTCGCTCCCTCCCTTCCC 61.158 72.222 0.00 0.00 0.00 3.97
553 571 2.689034 CGCTCCCTCCCTTCCCTT 60.689 66.667 0.00 0.00 0.00 3.95
641 659 3.224324 GCCCCGCTCGATCTGGTA 61.224 66.667 0.00 0.00 0.00 3.25
642 660 3.043419 CCCCGCTCGATCTGGTAG 58.957 66.667 0.00 0.00 0.00 3.18
643 661 2.565645 CCCCGCTCGATCTGGTAGG 61.566 68.421 0.00 0.00 0.00 3.18
644 662 2.336809 CCGCTCGATCTGGTAGGC 59.663 66.667 0.00 0.00 0.00 3.93
664 682 0.806868 ACGCCTCGTTAGATTCGTGA 59.193 50.000 0.00 0.00 36.35 4.35
665 683 1.202154 ACGCCTCGTTAGATTCGTGAG 60.202 52.381 0.00 0.00 36.35 3.51
970 1155 1.228552 ATTTCGCCCTGTTGCTGGT 60.229 52.632 0.00 0.00 0.00 4.00
993 1178 0.417437 TTCTCCTGGTGATGAGGGGA 59.583 55.000 0.00 0.00 38.42 4.81
1191 1376 3.118445 GGTGAGGAAGCTATCTCTTTGCT 60.118 47.826 14.71 0.00 38.87 3.91
1192 1377 3.870419 GTGAGGAAGCTATCTCTTTGCTG 59.130 47.826 14.71 0.00 37.11 4.41
1193 1378 2.871633 GAGGAAGCTATCTCTTTGCTGC 59.128 50.000 8.49 0.00 37.11 5.25
1194 1379 1.596727 GGAAGCTATCTCTTTGCTGCG 59.403 52.381 0.00 0.00 37.11 5.18
1349 1534 2.877786 CCCTTTTTGTGGATTTGGTTGC 59.122 45.455 0.00 0.00 0.00 4.17
1472 1657 3.181482 TGGTATTTGTGGCTGTTTGTGTG 60.181 43.478 0.00 0.00 0.00 3.82
1499 1684 7.762128 AAGATAGATTCTTCGGGGCAATCCG 62.762 48.000 6.10 6.10 40.86 4.18
1529 1714 2.569853 TCGAGGCATTCTGGGTTCTTAA 59.430 45.455 0.00 0.00 0.00 1.85
1586 1771 2.957402 TCCAGAGTTTCAAGCATGGT 57.043 45.000 0.00 0.00 0.00 3.55
1661 1848 6.254281 TGCTCTTGTTATTAAAGGTTCAGC 57.746 37.500 0.00 0.00 0.00 4.26
1715 1902 2.932614 ACTTTGTGTAGATCGATGCAGC 59.067 45.455 0.54 0.00 0.00 5.25
1762 1949 3.754850 GCGGAGTTAGTTTAACCATGGTT 59.245 43.478 31.85 31.85 39.47 3.67
1847 2034 7.732996 TGCTGAGGTTTTAGACTTTTAGTAGT 58.267 34.615 0.00 0.00 0.00 2.73
1873 2060 2.930826 ATTAGTATCCCCGGCTTGTG 57.069 50.000 0.00 0.00 0.00 3.33
1889 2076 3.119245 GCTTGTGTAACTGGAGATACCGA 60.119 47.826 0.00 0.00 38.04 4.69
1906 2093 1.593006 CCGATTAGTTGTGCTTAGGCG 59.407 52.381 0.00 0.00 42.25 5.52
1936 2123 6.959361 TGTTTCAACAAGATAAGAGTGAAGC 58.041 36.000 0.00 0.00 35.67 3.86
1939 2126 7.807977 TTCAACAAGATAAGAGTGAAGCTTT 57.192 32.000 0.00 0.00 0.00 3.51
1974 2162 7.655521 TTACTAGCTTCATGGCTTTAGTAGA 57.344 36.000 1.62 0.00 42.97 2.59
1999 2187 4.503370 GCAGTAACTAATACGCTTCTGTCC 59.497 45.833 0.00 0.00 39.62 4.02
2000 2188 5.041940 CAGTAACTAATACGCTTCTGTCCC 58.958 45.833 0.00 0.00 39.62 4.46
2001 2189 4.708421 AGTAACTAATACGCTTCTGTCCCA 59.292 41.667 0.00 0.00 39.62 4.37
2002 2190 4.755266 AACTAATACGCTTCTGTCCCAT 57.245 40.909 0.00 0.00 0.00 4.00
2021 2209 7.124599 TGTCCCATTTTGAAATGCTTCATCTAT 59.875 33.333 10.26 0.00 43.38 1.98
2025 2213 7.223971 CCATTTTGAAATGCTTCATCTATGGTG 59.776 37.037 10.26 0.00 43.38 4.17
2040 2228 6.680148 TCTATGGTGTGCCTATATTGCTAA 57.320 37.500 0.00 0.00 35.27 3.09
2111 2299 4.697352 ACAGTTTCCATGATTGAGTACTGC 59.303 41.667 0.00 0.00 36.19 4.40
2132 2320 7.680730 ACTGCTATGTAGTTTCTTATATGGGG 58.319 38.462 0.00 0.00 0.00 4.96
2203 2407 4.539726 TCATAGCTGAGGGCATTCATTTT 58.460 39.130 0.00 0.00 44.79 1.82
2290 2494 3.821033 GGTTCCCATGATACTTGTATGCC 59.179 47.826 0.00 0.00 0.00 4.40
2441 2711 9.045223 CCTGCAAATTTATAAAGATAAAAGGCC 57.955 33.333 3.94 0.00 40.17 5.19
2519 2789 1.164041 GGTGCACACTACACGGCTTT 61.164 55.000 20.43 0.00 38.98 3.51
2773 3044 4.957296 TCACTTTCTCTGTTACCAAGACC 58.043 43.478 0.00 0.00 0.00 3.85
2790 3061 5.065218 CCAAGACCAGTCTATTACATGCAAC 59.935 44.000 0.00 0.00 39.39 4.17
2925 3314 6.781138 TGTAATCATCCAGTGCGTAATTTTC 58.219 36.000 0.00 0.00 0.00 2.29
3213 3602 6.094048 TCTCCTTGCATTTGTAAACTGCTATC 59.906 38.462 4.32 0.00 36.84 2.08
3323 3712 4.830600 CCTCAAAAAGGGGCTAAACTGTTA 59.169 41.667 0.00 0.00 42.03 2.41
3361 3750 4.738998 TGGGGCCCTGTTGCATCG 62.739 66.667 25.93 0.00 0.00 3.84
3490 3884 2.505819 CTCAGGGCTGGTAATGGTTACT 59.494 50.000 0.51 0.00 36.39 2.24
3502 3896 8.532186 TGGTAATGGTTACTTTATGAATGCAT 57.468 30.769 0.00 0.00 36.18 3.96
3599 4006 2.932614 GTGAGCTCACTTATTGCGTCAT 59.067 45.455 34.54 0.00 43.25 3.06
3608 4015 6.811954 TCACTTATTGCGTCATTATCTACCA 58.188 36.000 0.00 0.00 0.00 3.25
3738 4153 2.368548 TCTGCACTCCTGACTTTGCTTA 59.631 45.455 0.00 0.00 35.91 3.09
4063 4494 9.962759 GCTGATTTTGAATTCATACAAAACATC 57.037 29.630 9.40 4.56 44.68 3.06
4074 4505 5.414454 TCATACAAAACATCTTAGGTGGCAC 59.586 40.000 9.70 9.70 0.00 5.01
4170 4601 3.774766 GGGAATATGGGAATAAATGGGCC 59.225 47.826 0.00 0.00 0.00 5.80
4221 4652 3.609853 CTGCCAAACAGCTTACATCCTA 58.390 45.455 0.00 0.00 40.19 2.94
4237 4668 6.855763 ACATCCTATTGGAATTTTTCTGCA 57.144 33.333 0.00 0.00 46.80 4.41
4269 4700 3.128349 GGCATGATGTTGAAATGGCATC 58.872 45.455 0.00 0.00 44.04 3.91
4341 4774 3.054655 TCACCCATTTTACTAGACCTGCC 60.055 47.826 0.00 0.00 0.00 4.85
4358 4791 6.095440 AGACCTGCCATGATGTAAAATAACAC 59.905 38.462 0.00 0.00 30.75 3.32
4359 4792 5.163663 ACCTGCCATGATGTAAAATAACACG 60.164 40.000 0.00 0.00 30.75 4.49
4360 4793 5.242069 TGCCATGATGTAAAATAACACGG 57.758 39.130 0.00 0.00 30.75 4.94
4408 4843 8.845942 AACTCGTTATGTTGAACTTTTTAACC 57.154 30.769 0.00 0.00 0.00 2.85
4471 4906 3.747521 CTGGCCAACCACCACCCAA 62.748 63.158 7.01 0.00 42.67 4.12
4472 4907 2.444895 GGCCAACCACCACCCAAA 60.445 61.111 0.00 0.00 35.26 3.28
4473 4908 2.802724 GGCCAACCACCACCCAAAC 61.803 63.158 0.00 0.00 35.26 2.93
4474 4909 2.802724 GCCAACCACCACCCAAACC 61.803 63.158 0.00 0.00 0.00 3.27
4475 4910 1.075600 CCAACCACCACCCAAACCT 60.076 57.895 0.00 0.00 0.00 3.50
4476 4911 1.112916 CCAACCACCACCCAAACCTC 61.113 60.000 0.00 0.00 0.00 3.85
4477 4912 0.106217 CAACCACCACCCAAACCTCT 60.106 55.000 0.00 0.00 0.00 3.69
4478 4913 1.144093 CAACCACCACCCAAACCTCTA 59.856 52.381 0.00 0.00 0.00 2.43
4479 4914 1.755200 ACCACCACCCAAACCTCTAT 58.245 50.000 0.00 0.00 0.00 1.98
4480 4915 2.070573 ACCACCACCCAAACCTCTATT 58.929 47.619 0.00 0.00 0.00 1.73
4481 4916 2.225017 ACCACCACCCAAACCTCTATTG 60.225 50.000 0.00 0.00 0.00 1.90
4482 4917 2.225017 CCACCACCCAAACCTCTATTGT 60.225 50.000 0.00 0.00 0.00 2.71
4483 4918 3.496331 CACCACCCAAACCTCTATTGTT 58.504 45.455 0.00 0.00 0.00 2.83
4484 4919 3.255642 CACCACCCAAACCTCTATTGTTG 59.744 47.826 0.00 0.00 0.00 3.33
4485 4920 3.139397 ACCACCCAAACCTCTATTGTTGA 59.861 43.478 0.00 0.00 0.00 3.18
4486 4921 4.202673 ACCACCCAAACCTCTATTGTTGAT 60.203 41.667 0.00 0.00 0.00 2.57
4487 4922 4.772100 CCACCCAAACCTCTATTGTTGATT 59.228 41.667 0.00 0.00 0.00 2.57
4493 4928 7.420800 CCAAACCTCTATTGTTGATTATCTGC 58.579 38.462 0.00 0.00 0.00 4.26
4641 5076 5.048713 CCAAAAACTAACTACAGGCTTCTGG 60.049 44.000 0.00 0.00 42.60 3.86
4743 5642 7.488322 TCTGTTTATAACTGTGCAAAGCTTTT 58.512 30.769 9.53 0.00 0.00 2.27
4814 5713 2.438021 TCTTTACTGTCTGCACCCTGTT 59.562 45.455 0.00 0.00 0.00 3.16
4997 5896 6.715280 ACTAGTTGGTCATGATGACTTCAAT 58.285 36.000 23.28 10.49 46.19 2.57
5039 5938 3.334910 TCTGAGGGCCATCTTGATCTA 57.665 47.619 19.75 0.00 0.00 1.98
5067 5966 0.388520 GCCCGGCATCACTTCAAAAC 60.389 55.000 3.91 0.00 0.00 2.43
5128 6027 5.063944 CACATCTACAGTCATACAAACTGGC 59.936 44.000 8.03 0.00 46.73 4.85
5188 6087 0.821711 TTACCAACTGTGCAGCCACC 60.822 55.000 0.00 0.00 41.35 4.61
5252 6151 0.037326 CTTCAGCGGCACAAGGTCTA 60.037 55.000 1.45 0.00 0.00 2.59
5337 6236 3.374058 GGTTGATTCCACACTTGATACCG 59.626 47.826 0.00 0.00 0.00 4.02
5503 6402 4.216257 ACTCATTTCTGAACATCAAACCGG 59.784 41.667 0.00 0.00 0.00 5.28
5814 6713 1.559682 TGGGTTCTCTTGATGGGCTAC 59.440 52.381 0.00 0.00 0.00 3.58
5825 6724 1.972660 ATGGGCTACCGAGTTCTGCC 61.973 60.000 0.00 0.00 42.56 4.85
5927 6826 7.261688 AGATTTTTCATCAAATGGATTGGGT 57.738 32.000 0.00 0.00 39.62 4.51
5988 6887 6.882610 ATTCTCAAAGCACACATAGTTTGA 57.117 33.333 0.00 0.00 36.74 2.69
6071 6970 5.968254 TCAACCAAGAACATAGCGTATACA 58.032 37.500 3.32 0.00 0.00 2.29
6168 7070 4.764679 ATGCGTTTTCTTTGATGCAGTA 57.235 36.364 0.00 0.00 40.72 2.74
6315 7222 1.409064 TGATCGGCTCTGGTGTATGTC 59.591 52.381 0.00 0.00 0.00 3.06
6316 7223 0.753262 ATCGGCTCTGGTGTATGTCC 59.247 55.000 0.00 0.00 0.00 4.02
6464 7372 6.973474 TGTACAAACACGGTCTTTAAATTTGG 59.027 34.615 0.00 0.00 31.42 3.28
6713 7622 4.349663 TGTTTGTCGAGAAACTGTTTGG 57.650 40.909 30.76 0.18 36.86 3.28
6725 7634 5.422012 AGAAACTGTTTGGTTGATTTGAGGT 59.578 36.000 11.03 0.00 0.00 3.85
6766 7683 3.243035 TGGCGAATGTTCAGTGTTTCTTG 60.243 43.478 0.00 0.00 0.00 3.02
6771 7688 5.448496 CGAATGTTCAGTGTTTCTTGGTGAA 60.448 40.000 0.00 0.00 0.00 3.18
6789 7707 9.347240 CTTGGTGAAATGAATATCTGGTAGATT 57.653 33.333 0.00 0.00 36.20 2.40
6805 7723 8.157476 TCTGGTAGATTCTTTTACTTCTGCTTT 58.843 33.333 0.00 0.00 0.00 3.51
6819 7737 2.756760 TCTGCTTTTGGAGGATGAATGC 59.243 45.455 0.00 0.00 38.51 3.56
6909 7827 1.145803 GTACCTTCAGTGCCACGAAC 58.854 55.000 0.00 0.00 0.00 3.95
6910 7828 0.753867 TACCTTCAGTGCCACGAACA 59.246 50.000 0.00 0.00 0.00 3.18
6911 7829 0.108585 ACCTTCAGTGCCACGAACAT 59.891 50.000 0.00 0.00 0.00 2.71
6912 7830 0.518636 CCTTCAGTGCCACGAACATG 59.481 55.000 0.00 0.00 0.00 3.21
6913 7831 0.518636 CTTCAGTGCCACGAACATGG 59.481 55.000 0.00 0.00 43.26 3.66
6914 7832 0.107643 TTCAGTGCCACGAACATGGA 59.892 50.000 0.00 0.00 43.02 3.41
6915 7833 0.107643 TCAGTGCCACGAACATGGAA 59.892 50.000 0.00 0.00 43.02 3.53
6930 7871 6.147164 CGAACATGGAAACTCAAAAGCTAGTA 59.853 38.462 0.00 0.00 0.00 1.82
6931 7872 6.803154 ACATGGAAACTCAAAAGCTAGTAC 57.197 37.500 0.00 0.00 0.00 2.73
6951 7895 2.744202 ACGAGTCATCATGTTTGGCTTC 59.256 45.455 6.91 1.73 0.00 3.86
6975 7919 9.542462 TTCTATCTCCTCACCAAATTATTTACG 57.458 33.333 0.00 0.00 0.00 3.18
6976 7920 8.701895 TCTATCTCCTCACCAAATTATTTACGT 58.298 33.333 0.00 0.00 0.00 3.57
6977 7921 9.976511 CTATCTCCTCACCAAATTATTTACGTA 57.023 33.333 0.00 0.00 0.00 3.57
7030 7974 5.474578 TCAAGTCAGACTGAAATGCTACT 57.525 39.130 6.76 0.00 0.00 2.57
7082 8029 6.651975 TTTTTACACCCAATTATTCGTGGT 57.348 33.333 6.63 0.00 32.60 4.16
7086 8033 3.832276 CACCCAATTATTCGTGGTGTTG 58.168 45.455 8.72 0.00 41.20 3.33
7087 8034 3.254657 CACCCAATTATTCGTGGTGTTGT 59.745 43.478 8.72 0.00 41.20 3.32
7088 8035 3.504520 ACCCAATTATTCGTGGTGTTGTC 59.495 43.478 0.00 0.00 32.60 3.18
7089 8036 3.119637 CCCAATTATTCGTGGTGTTGTCC 60.120 47.826 0.00 0.00 32.60 4.02
7090 8037 3.425625 CCAATTATTCGTGGTGTTGTCCG 60.426 47.826 0.00 0.00 0.00 4.79
7091 8038 2.816204 TTATTCGTGGTGTTGTCCGA 57.184 45.000 0.00 0.00 0.00 4.55
7092 8039 3.322211 TTATTCGTGGTGTTGTCCGAT 57.678 42.857 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.743995 CCGACACCCGAAACCATCC 60.744 63.158 0.00 0.00 41.76 3.51
1 2 2.396157 GCCGACACCCGAAACCATC 61.396 63.158 0.00 0.00 41.76 3.51
20 21 3.550992 GACCATGCCACGTACGCG 61.551 66.667 16.72 3.53 44.93 6.01
21 22 3.192922 GGACCATGCCACGTACGC 61.193 66.667 16.72 0.00 0.00 4.42
22 23 2.822418 TTCGGACCATGCCACGTACG 62.822 60.000 15.01 15.01 37.68 3.67
23 24 1.079681 TTCGGACCATGCCACGTAC 60.080 57.895 0.00 0.00 0.00 3.67
24 25 1.079681 GTTCGGACCATGCCACGTA 60.080 57.895 0.00 0.00 0.00 3.57
25 26 2.358247 GTTCGGACCATGCCACGT 60.358 61.111 0.00 0.00 0.00 4.49
26 27 2.047274 AGTTCGGACCATGCCACG 60.047 61.111 0.00 0.00 0.00 4.94
27 28 1.745489 GGAGTTCGGACCATGCCAC 60.745 63.158 0.00 0.00 0.00 5.01
28 29 2.668632 GGAGTTCGGACCATGCCA 59.331 61.111 0.00 0.00 0.00 4.92
29 30 2.124695 GGGAGTTCGGACCATGCC 60.125 66.667 0.00 0.00 0.00 4.40
30 31 2.511600 CGGGAGTTCGGACCATGC 60.512 66.667 0.00 0.00 0.00 4.06
31 32 2.511600 GCGGGAGTTCGGACCATG 60.512 66.667 0.00 0.00 0.00 3.66
32 33 2.119484 TTTGCGGGAGTTCGGACCAT 62.119 55.000 0.00 0.00 0.00 3.55
33 34 2.725203 CTTTGCGGGAGTTCGGACCA 62.725 60.000 0.00 0.00 0.00 4.02
34 35 2.031465 TTTGCGGGAGTTCGGACC 59.969 61.111 0.00 0.00 0.00 4.46
35 36 2.677979 GCTTTGCGGGAGTTCGGAC 61.678 63.158 0.00 0.00 0.00 4.79
36 37 2.358247 GCTTTGCGGGAGTTCGGA 60.358 61.111 0.00 0.00 0.00 4.55
37 38 3.431725 GGCTTTGCGGGAGTTCGG 61.432 66.667 0.00 0.00 0.00 4.30
38 39 3.431725 GGGCTTTGCGGGAGTTCG 61.432 66.667 0.00 0.00 0.00 3.95
39 40 2.034221 AGGGCTTTGCGGGAGTTC 59.966 61.111 0.00 0.00 0.00 3.01
40 41 2.034221 GAGGGCTTTGCGGGAGTT 59.966 61.111 0.00 0.00 0.00 3.01
41 42 2.930562 AGAGGGCTTTGCGGGAGT 60.931 61.111 0.00 0.00 0.00 3.85
42 43 2.437359 CAGAGGGCTTTGCGGGAG 60.437 66.667 0.00 0.00 0.00 4.30
43 44 4.033776 CCAGAGGGCTTTGCGGGA 62.034 66.667 0.00 0.00 0.00 5.14
44 45 3.868200 AACCAGAGGGCTTTGCGGG 62.868 63.158 0.00 0.00 37.90 6.13
45 46 1.903404 AAACCAGAGGGCTTTGCGG 60.903 57.895 0.00 0.00 37.90 5.69
46 47 1.286880 CAAACCAGAGGGCTTTGCG 59.713 57.895 0.00 0.00 37.90 4.85
47 48 1.005748 GCAAACCAGAGGGCTTTGC 60.006 57.895 13.72 13.72 45.17 3.68
48 49 0.829182 AGGCAAACCAGAGGGCTTTG 60.829 55.000 0.00 0.00 39.06 2.77
49 50 0.540597 GAGGCAAACCAGAGGGCTTT 60.541 55.000 0.00 0.00 37.58 3.51
50 51 1.075659 GAGGCAAACCAGAGGGCTT 59.924 57.895 0.00 0.00 37.58 4.35
51 52 2.759795 GAGGCAAACCAGAGGGCT 59.240 61.111 0.00 0.00 40.45 5.19
52 53 2.361737 GGAGGCAAACCAGAGGGC 60.362 66.667 0.00 0.00 39.06 5.19
53 54 0.040204 ATTGGAGGCAAACCAGAGGG 59.960 55.000 0.00 0.00 38.70 4.30
54 55 1.928868 AATTGGAGGCAAACCAGAGG 58.071 50.000 0.00 0.00 38.70 3.69
55 56 2.611224 GCAAATTGGAGGCAAACCAGAG 60.611 50.000 0.00 0.00 38.70 3.35
56 57 1.344114 GCAAATTGGAGGCAAACCAGA 59.656 47.619 0.00 0.00 38.70 3.86
57 58 1.070445 TGCAAATTGGAGGCAAACCAG 59.930 47.619 0.00 0.00 38.70 4.00
58 59 1.070445 CTGCAAATTGGAGGCAAACCA 59.930 47.619 6.60 0.00 39.06 3.67
59 60 1.799544 CTGCAAATTGGAGGCAAACC 58.200 50.000 6.60 0.00 37.06 3.27
66 67 3.641437 TCGTTTTCCTGCAAATTGGAG 57.359 42.857 7.56 7.56 35.43 3.86
67 68 3.712187 GTTCGTTTTCCTGCAAATTGGA 58.288 40.909 0.00 0.00 0.00 3.53
68 69 2.470999 CGTTCGTTTTCCTGCAAATTGG 59.529 45.455 0.00 0.00 0.00 3.16
69 70 3.112580 ACGTTCGTTTTCCTGCAAATTG 58.887 40.909 0.00 0.00 0.00 2.32
70 71 3.066203 AGACGTTCGTTTTCCTGCAAATT 59.934 39.130 0.00 0.00 0.00 1.82
71 72 2.616842 AGACGTTCGTTTTCCTGCAAAT 59.383 40.909 0.00 0.00 0.00 2.32
72 73 2.011222 AGACGTTCGTTTTCCTGCAAA 58.989 42.857 0.00 0.00 0.00 3.68
73 74 1.658994 AGACGTTCGTTTTCCTGCAA 58.341 45.000 0.00 0.00 0.00 4.08
74 75 2.512485 TAGACGTTCGTTTTCCTGCA 57.488 45.000 0.00 0.00 0.00 4.41
75 76 2.411160 GCTTAGACGTTCGTTTTCCTGC 60.411 50.000 0.00 0.00 0.00 4.85
76 77 2.157085 GGCTTAGACGTTCGTTTTCCTG 59.843 50.000 0.00 0.00 0.00 3.86
77 78 2.410939 GGCTTAGACGTTCGTTTTCCT 58.589 47.619 0.00 0.00 0.00 3.36
78 79 1.125566 CGGCTTAGACGTTCGTTTTCC 59.874 52.381 0.00 0.00 0.00 3.13
79 80 1.125566 CCGGCTTAGACGTTCGTTTTC 59.874 52.381 6.76 0.00 28.54 2.29
80 81 1.142474 CCGGCTTAGACGTTCGTTTT 58.858 50.000 6.76 0.00 28.54 2.43
81 82 0.032540 ACCGGCTTAGACGTTCGTTT 59.967 50.000 6.76 0.00 28.54 3.60
82 83 0.387750 GACCGGCTTAGACGTTCGTT 60.388 55.000 6.76 0.00 28.54 3.85
83 84 1.211190 GACCGGCTTAGACGTTCGT 59.789 57.895 6.76 0.00 28.54 3.85
84 85 1.515736 GGACCGGCTTAGACGTTCG 60.516 63.158 6.76 0.00 28.54 3.95
85 86 0.179142 GAGGACCGGCTTAGACGTTC 60.179 60.000 6.76 0.32 28.54 3.95
86 87 1.888736 GAGGACCGGCTTAGACGTT 59.111 57.895 6.76 0.00 28.54 3.99
87 88 2.404995 CGAGGACCGGCTTAGACGT 61.405 63.158 6.76 0.00 28.54 4.34
88 89 2.408022 CGAGGACCGGCTTAGACG 59.592 66.667 0.00 0.00 33.91 4.18
110 111 4.023450 TGGTCATCTAACACGATACCGATC 60.023 45.833 0.00 0.00 39.50 3.69
111 112 3.887110 TGGTCATCTAACACGATACCGAT 59.113 43.478 0.00 0.00 39.50 4.18
112 113 3.281158 TGGTCATCTAACACGATACCGA 58.719 45.455 0.00 0.00 39.50 4.69
113 114 3.703286 TGGTCATCTAACACGATACCG 57.297 47.619 0.00 0.00 42.50 4.02
114 115 6.143438 CGTATTTGGTCATCTAACACGATACC 59.857 42.308 0.00 0.00 30.24 2.73
115 116 6.694411 ACGTATTTGGTCATCTAACACGATAC 59.306 38.462 0.00 0.00 31.86 2.24
116 117 6.798482 ACGTATTTGGTCATCTAACACGATA 58.202 36.000 0.00 0.00 31.86 2.92
117 118 5.657474 ACGTATTTGGTCATCTAACACGAT 58.343 37.500 0.00 0.00 31.86 3.73
118 119 5.063180 ACGTATTTGGTCATCTAACACGA 57.937 39.130 0.00 0.00 31.86 4.35
119 120 4.266976 GGACGTATTTGGTCATCTAACACG 59.733 45.833 0.00 0.00 36.12 4.49
120 121 4.266976 CGGACGTATTTGGTCATCTAACAC 59.733 45.833 0.00 0.00 36.12 3.32
121 122 4.158209 TCGGACGTATTTGGTCATCTAACA 59.842 41.667 0.00 0.00 36.12 2.41
122 123 4.675510 TCGGACGTATTTGGTCATCTAAC 58.324 43.478 0.00 0.00 36.12 2.34
123 124 4.987408 TCGGACGTATTTGGTCATCTAA 57.013 40.909 0.00 0.00 36.12 2.10
124 125 4.400251 AGTTCGGACGTATTTGGTCATCTA 59.600 41.667 0.00 0.00 36.12 1.98
125 126 3.194968 AGTTCGGACGTATTTGGTCATCT 59.805 43.478 0.00 0.00 36.12 2.90
126 127 3.306166 CAGTTCGGACGTATTTGGTCATC 59.694 47.826 0.00 0.00 36.12 2.92
127 128 3.259064 CAGTTCGGACGTATTTGGTCAT 58.741 45.455 0.00 0.00 36.12 3.06
128 129 2.679450 CAGTTCGGACGTATTTGGTCA 58.321 47.619 0.00 0.00 36.12 4.02
129 130 1.392510 GCAGTTCGGACGTATTTGGTC 59.607 52.381 0.00 0.00 0.00 4.02
130 131 1.001633 AGCAGTTCGGACGTATTTGGT 59.998 47.619 0.00 0.00 0.00 3.67
131 132 1.722011 AGCAGTTCGGACGTATTTGG 58.278 50.000 0.00 0.00 0.00 3.28
132 133 2.159707 CCAAGCAGTTCGGACGTATTTG 60.160 50.000 0.00 0.00 0.00 2.32
133 134 2.073816 CCAAGCAGTTCGGACGTATTT 58.926 47.619 0.00 0.00 0.00 1.40
134 135 1.001633 ACCAAGCAGTTCGGACGTATT 59.998 47.619 0.00 0.00 0.00 1.89
135 136 0.606604 ACCAAGCAGTTCGGACGTAT 59.393 50.000 0.00 0.00 0.00 3.06
136 137 0.390124 AACCAAGCAGTTCGGACGTA 59.610 50.000 0.00 0.00 0.00 3.57
137 138 0.878961 GAACCAAGCAGTTCGGACGT 60.879 55.000 0.00 0.00 37.04 4.34
138 139 1.860078 GAACCAAGCAGTTCGGACG 59.140 57.895 0.00 0.00 37.04 4.79
143 144 0.884704 TCGCCTGAACCAAGCAGTTC 60.885 55.000 7.20 7.20 45.24 3.01
144 145 0.465460 TTCGCCTGAACCAAGCAGTT 60.465 50.000 0.00 0.00 0.00 3.16
145 146 1.148273 TTCGCCTGAACCAAGCAGT 59.852 52.632 0.00 0.00 0.00 4.40
146 147 4.063529 TTCGCCTGAACCAAGCAG 57.936 55.556 0.00 0.00 0.00 4.24
154 155 2.449031 ATCACCTGCGTTCGCCTGAA 62.449 55.000 14.44 0.00 0.00 3.02
155 156 2.449031 AATCACCTGCGTTCGCCTGA 62.449 55.000 14.44 11.96 0.00 3.86
156 157 1.577328 AAATCACCTGCGTTCGCCTG 61.577 55.000 14.44 7.94 0.00 4.85
157 158 1.302511 AAATCACCTGCGTTCGCCT 60.303 52.632 14.44 0.00 0.00 5.52
158 159 1.154225 CAAATCACCTGCGTTCGCC 60.154 57.895 14.44 0.00 0.00 5.54
159 160 0.179215 CTCAAATCACCTGCGTTCGC 60.179 55.000 10.34 10.34 0.00 4.70
160 161 1.391485 CTCTCAAATCACCTGCGTTCG 59.609 52.381 0.00 0.00 0.00 3.95
161 162 2.413453 GACTCTCAAATCACCTGCGTTC 59.587 50.000 0.00 0.00 0.00 3.95
162 163 2.417719 GACTCTCAAATCACCTGCGTT 58.582 47.619 0.00 0.00 0.00 4.84
163 164 1.338200 GGACTCTCAAATCACCTGCGT 60.338 52.381 0.00 0.00 0.00 5.24
164 165 1.338105 TGGACTCTCAAATCACCTGCG 60.338 52.381 0.00 0.00 0.00 5.18
165 166 2.479566 TGGACTCTCAAATCACCTGC 57.520 50.000 0.00 0.00 0.00 4.85
166 167 6.351711 TCAATATGGACTCTCAAATCACCTG 58.648 40.000 0.00 0.00 0.00 4.00
167 168 6.385176 TCTCAATATGGACTCTCAAATCACCT 59.615 38.462 0.00 0.00 0.00 4.00
168 169 6.586344 TCTCAATATGGACTCTCAAATCACC 58.414 40.000 0.00 0.00 0.00 4.02
169 170 8.557864 CATTCTCAATATGGACTCTCAAATCAC 58.442 37.037 0.00 0.00 0.00 3.06
170 171 8.270030 ACATTCTCAATATGGACTCTCAAATCA 58.730 33.333 0.00 0.00 0.00 2.57
171 172 8.674263 ACATTCTCAATATGGACTCTCAAATC 57.326 34.615 0.00 0.00 0.00 2.17
172 173 8.270030 TGACATTCTCAATATGGACTCTCAAAT 58.730 33.333 0.00 0.00 0.00 2.32
173 174 7.623630 TGACATTCTCAATATGGACTCTCAAA 58.376 34.615 0.00 0.00 0.00 2.69
174 175 7.186570 TGACATTCTCAATATGGACTCTCAA 57.813 36.000 0.00 0.00 0.00 3.02
175 176 6.796785 TGACATTCTCAATATGGACTCTCA 57.203 37.500 0.00 0.00 0.00 3.27
176 177 8.674263 AAATGACATTCTCAATATGGACTCTC 57.326 34.615 0.05 0.00 30.60 3.20
177 178 9.471702 AAAAATGACATTCTCAATATGGACTCT 57.528 29.630 0.05 0.00 30.60 3.24
178 179 9.727627 GAAAAATGACATTCTCAATATGGACTC 57.272 33.333 0.05 0.00 30.60 3.36
179 180 9.471702 AGAAAAATGACATTCTCAATATGGACT 57.528 29.630 0.05 0.00 30.16 3.85
187 188 9.515020 GTGTACAAAGAAAAATGACATTCTCAA 57.485 29.630 0.00 0.00 34.90 3.02
188 189 8.681806 TGTGTACAAAGAAAAATGACATTCTCA 58.318 29.630 0.00 0.00 34.90 3.27
189 190 9.515020 TTGTGTACAAAGAAAAATGACATTCTC 57.485 29.630 0.00 1.96 34.90 2.87
190 191 9.520204 CTTGTGTACAAAGAAAAATGACATTCT 57.480 29.630 0.00 0.00 37.49 2.40
191 192 8.268738 GCTTGTGTACAAAGAAAAATGACATTC 58.731 33.333 16.88 0.00 35.15 2.67
192 193 7.981225 AGCTTGTGTACAAAGAAAAATGACATT 59.019 29.630 16.88 0.00 35.15 2.71
193 194 7.491682 AGCTTGTGTACAAAGAAAAATGACAT 58.508 30.769 16.88 0.00 35.15 3.06
194 195 6.862209 AGCTTGTGTACAAAGAAAAATGACA 58.138 32.000 16.88 0.00 35.15 3.58
195 196 6.972328 TGAGCTTGTGTACAAAGAAAAATGAC 59.028 34.615 16.88 0.00 35.15 3.06
196 197 6.972328 GTGAGCTTGTGTACAAAGAAAAATGA 59.028 34.615 16.88 0.00 35.15 2.57
222 223 7.014326 ACAACTCTTTTCCTAGGAAACAAATCC 59.986 37.037 32.21 0.00 42.88 3.01
263 264 3.973973 TCAGATCGGATATGGAAAAGGGT 59.026 43.478 12.28 0.00 0.00 4.34
278 279 2.285026 CGGTTTGTTGCGTATCAGATCG 60.285 50.000 0.00 0.00 0.00 3.69
333 346 0.515564 GCGACGGCGGCATAAATTAT 59.484 50.000 15.06 0.00 38.16 1.28
548 566 3.385749 GATGGCGCGAAGGAAGGGA 62.386 63.158 12.10 0.00 0.00 4.20
551 569 1.884926 GGAGATGGCGCGAAGGAAG 60.885 63.158 12.10 0.00 0.00 3.46
553 571 3.849951 GGGAGATGGCGCGAAGGA 61.850 66.667 12.10 0.00 0.00 3.36
642 660 1.480219 CGAATCTAACGAGGCGTGCC 61.480 60.000 1.67 1.67 39.99 5.01
643 661 0.801067 ACGAATCTAACGAGGCGTGC 60.801 55.000 0.00 0.00 39.99 5.34
644 662 0.914551 CACGAATCTAACGAGGCGTG 59.085 55.000 0.00 0.00 39.99 5.34
935 1119 4.024048 GCGAAATCACCACAAGAAAGAAGA 60.024 41.667 0.00 0.00 0.00 2.87
970 1155 2.626950 CCCTCATCACCAGGAGAACCTA 60.627 54.545 0.00 0.00 45.94 3.08
993 1178 2.039831 ATGGCCCCCATCTACCGT 60.040 61.111 0.00 0.00 40.74 4.83
1191 1376 4.403137 GCCAATCAAGCGCACGCA 62.403 61.111 18.24 0.00 44.88 5.24
1193 1378 4.481112 GGGCCAATCAAGCGCACG 62.481 66.667 11.47 0.00 42.34 5.34
1194 1379 4.481112 CGGGCCAATCAAGCGCAC 62.481 66.667 11.47 0.00 42.88 5.34
1349 1534 0.811616 GCTGATAGAGCCACAACCCG 60.812 60.000 0.00 0.00 42.54 5.28
1499 1684 3.190874 CAGAATGCCTCGAGAACCTAAC 58.809 50.000 15.71 0.00 0.00 2.34
1529 1714 8.768397 TGTTGATATAGTAGTTCATGGAACCTT 58.232 33.333 5.54 0.00 42.85 3.50
1557 1742 5.221126 GCTTGAAACTCTGGATGAAAACAGT 60.221 40.000 0.00 0.00 36.17 3.55
1562 1747 4.219070 CCATGCTTGAAACTCTGGATGAAA 59.781 41.667 0.22 0.00 31.39 2.69
1586 1771 6.892658 ATTCACCACTACAACATGCTTAAA 57.107 33.333 0.00 0.00 0.00 1.52
1661 1848 4.824289 ACTAAGCCAAGCAAATCAAATGG 58.176 39.130 0.00 0.00 0.00 3.16
1762 1949 1.590610 AAATATTGCACGGCGCCACA 61.591 50.000 28.98 18.62 41.33 4.17
1847 2034 6.100134 ACAAGCCGGGGATACTAATACTAAAA 59.900 38.462 2.18 0.00 0.00 1.52
1873 2060 6.696148 CACAACTAATCGGTATCTCCAGTTAC 59.304 42.308 0.00 0.00 30.72 2.50
1889 2076 1.339631 TGCCGCCTAAGCACAACTAAT 60.340 47.619 0.00 0.00 39.83 1.73
1906 2093 6.072112 TCTTATCTTGTTGAAACAACTGCC 57.928 37.500 14.19 0.00 43.45 4.85
1965 2153 7.111317 GCGTATTAGTTACTGCGTCTACTAAAG 59.889 40.741 14.17 11.51 36.85 1.85
1974 2162 4.103357 CAGAAGCGTATTAGTTACTGCGT 58.897 43.478 0.00 0.00 36.27 5.24
1990 2178 7.772749 GAAGCATTTCAAAATGGGACAGAAGC 61.773 42.308 15.29 0.51 44.54 3.86
1999 2187 7.223971 CACCATAGATGAAGCATTTCAAAATGG 59.776 37.037 15.29 17.06 45.82 3.16
2000 2188 7.762615 ACACCATAGATGAAGCATTTCAAAATG 59.237 33.333 10.44 10.44 45.82 2.32
2001 2189 7.762615 CACACCATAGATGAAGCATTTCAAAAT 59.237 33.333 0.00 0.00 45.82 1.82
2002 2190 7.092079 CACACCATAGATGAAGCATTTCAAAA 58.908 34.615 0.00 0.00 45.82 2.44
2021 2209 3.118075 TGCTTAGCAATATAGGCACACCA 60.118 43.478 3.67 0.00 34.84 4.17
2106 2294 8.812972 CCCCATATAAGAAACTACATAGCAGTA 58.187 37.037 0.00 0.00 0.00 2.74
2109 2297 7.865530 TCCCCATATAAGAAACTACATAGCA 57.134 36.000 0.00 0.00 0.00 3.49
2175 2363 0.108138 GCCCTCAGCTATGAACACGT 60.108 55.000 0.00 0.00 38.99 4.49
2203 2407 2.230025 CCAGTGTCACCACAAACAACAA 59.770 45.455 0.00 0.00 44.39 2.83
2290 2494 7.147724 TGGTTGAGATATACCCAGTAAAGTCTG 60.148 40.741 0.00 0.00 33.34 3.51
2360 2571 6.683974 AAATTTCCCATAGATGAACACTCG 57.316 37.500 0.00 0.00 0.00 4.18
2458 2728 5.793030 AATGTACTGCTAGTCCTACCATC 57.207 43.478 0.00 0.00 0.00 3.51
2519 2789 6.605471 TTTGCAGAAGAGGACTACATAAGA 57.395 37.500 0.00 0.00 0.00 2.10
2583 2854 7.971201 AGAAGATGGATATGAAGCACAATCTA 58.029 34.615 0.00 0.00 0.00 1.98
2615 2886 6.655930 TCAAGGTAATAAGGAACACCATACC 58.344 40.000 0.00 0.00 33.27 2.73
2773 3044 4.598406 TTGCGTTGCATGTAATAGACTG 57.402 40.909 0.00 0.00 38.76 3.51
2790 3061 4.319477 CCGGACTATGAATATGGTTTTGCG 60.319 45.833 0.00 0.00 0.00 4.85
2925 3314 5.068234 ACAGACATGGCAAATTGATTGAG 57.932 39.130 0.00 0.00 41.85 3.02
3083 3472 3.680490 TCCGCAATGTTTCATCCTGTTA 58.320 40.909 0.00 0.00 0.00 2.41
3213 3602 8.562052 TCATACTGCAAATGACAGCAAATATAG 58.438 33.333 7.20 0.00 40.73 1.31
3323 3712 5.009854 CACACCAGTGGAAAAAGTCATTT 57.990 39.130 18.40 0.00 42.13 2.32
3361 3750 6.639686 CCTCAAATGATGCTGCAAATATGTAC 59.360 38.462 6.36 0.00 0.00 2.90
3431 3825 4.024387 TCAGCATTAAACAACTGGTCGAAC 60.024 41.667 0.00 0.00 0.00 3.95
3599 4006 3.603158 TTCAGCTGCGTTGGTAGATAA 57.397 42.857 9.47 0.00 0.00 1.75
3608 4015 1.197721 CGGAAAGAATTCAGCTGCGTT 59.802 47.619 9.47 5.94 37.29 4.84
4063 4494 3.877559 TCAGATGATTGTGCCACCTAAG 58.122 45.455 0.00 0.00 0.00 2.18
4140 4571 4.301505 CCATATTCCCGATGGGCG 57.698 61.111 0.00 0.00 43.94 6.13
4170 4601 5.181245 TCCAGGAAGAACTTTTGCTATTTCG 59.819 40.000 0.00 0.00 0.00 3.46
4221 4652 7.765819 GCTAGGTTTATGCAGAAAAATTCCAAT 59.234 33.333 8.30 0.00 0.00 3.16
4237 4668 3.492102 ACATCATGCCGCTAGGTTTAT 57.508 42.857 0.00 0.00 40.50 1.40
4269 4700 4.641954 CATAGTTTGTTAGCAGCAACTCG 58.358 43.478 0.51 0.00 0.00 4.18
4318 4749 4.566907 GGCAGGTCTAGTAAAATGGGTGAA 60.567 45.833 0.00 0.00 0.00 3.18
4319 4750 3.054655 GGCAGGTCTAGTAAAATGGGTGA 60.055 47.826 0.00 0.00 0.00 4.02
4320 4751 3.279434 GGCAGGTCTAGTAAAATGGGTG 58.721 50.000 0.00 0.00 0.00 4.61
4321 4752 2.916934 TGGCAGGTCTAGTAAAATGGGT 59.083 45.455 0.00 0.00 0.00 4.51
4341 4774 4.097135 TGGCCCGTGTTATTTTACATCATG 59.903 41.667 0.00 0.00 0.00 3.07
4378 4813 5.834239 AGTTCAACATAACGAGTTAACGG 57.166 39.130 0.00 0.00 37.61 4.44
4471 4906 6.582636 TCGCAGATAATCAACAATAGAGGTT 58.417 36.000 0.00 0.00 0.00 3.50
4472 4907 6.161855 TCGCAGATAATCAACAATAGAGGT 57.838 37.500 0.00 0.00 0.00 3.85
4473 4908 7.664082 ATTCGCAGATAATCAACAATAGAGG 57.336 36.000 0.00 0.00 35.04 3.69
4476 4911 9.599322 GGTTTATTCGCAGATAATCAACAATAG 57.401 33.333 0.00 0.00 35.04 1.73
4477 4912 9.337396 AGGTTTATTCGCAGATAATCAACAATA 57.663 29.630 0.00 0.00 35.04 1.90
4478 4913 8.131100 CAGGTTTATTCGCAGATAATCAACAAT 58.869 33.333 0.00 0.00 35.04 2.71
4479 4914 7.335673 TCAGGTTTATTCGCAGATAATCAACAA 59.664 33.333 0.00 0.00 35.04 2.83
4480 4915 6.821160 TCAGGTTTATTCGCAGATAATCAACA 59.179 34.615 0.00 0.00 35.04 3.33
4481 4916 7.246674 TCAGGTTTATTCGCAGATAATCAAC 57.753 36.000 0.00 0.00 35.04 3.18
4482 4917 7.857734 TTCAGGTTTATTCGCAGATAATCAA 57.142 32.000 0.00 0.00 35.04 2.57
4483 4918 9.554395 TTATTCAGGTTTATTCGCAGATAATCA 57.446 29.630 0.00 0.00 35.04 2.57
4641 5076 8.229137 GCTTACAGATTTATCATCATTCAGCTC 58.771 37.037 0.00 0.00 0.00 4.09
4814 5713 5.751586 AGTGAACAAGGAAAACTAAGGTGA 58.248 37.500 0.00 0.00 0.00 4.02
4997 5896 1.948611 GCCACCGGCTTCTGTTTATCA 60.949 52.381 0.00 0.00 46.69 2.15
5039 5938 2.203480 ATGCCGGGCACTGTGTTT 60.203 55.556 26.48 2.98 43.04 2.83
5067 5966 2.408271 TGAGCTATTTCAGGCAGGTG 57.592 50.000 0.00 0.00 0.00 4.00
5128 6027 1.817099 GAGCGGTCCTTGGCATGAG 60.817 63.158 2.39 0.00 0.00 2.90
5252 6151 4.693283 TGTCACGAACAGAATCACTTTCT 58.307 39.130 0.00 0.00 45.83 2.52
5337 6236 0.107165 GTGCTATCAGGTTCCCCCAC 60.107 60.000 0.00 0.00 34.66 4.61
5825 6724 1.273327 GGTGAAACATCAAAGCCCCTG 59.727 52.381 0.00 0.00 39.98 4.45
5927 6826 2.632996 CAGGACCTCAGAACCACAAGTA 59.367 50.000 0.00 0.00 0.00 2.24
5988 6887 5.441718 TCCTTCATTATTGAGGCTTCACT 57.558 39.130 0.00 0.00 32.27 3.41
6071 6970 7.182060 AGGATTAGGTTACATCCATGTTTGTT 58.818 34.615 0.00 0.00 41.51 2.83
6150 7049 6.373779 AGTGAATACTGCATCAAAGAAAACG 58.626 36.000 0.00 0.00 35.34 3.60
6168 7070 6.839124 TGATCAGCATAAAACCAAGTGAAT 57.161 33.333 0.00 0.00 0.00 2.57
6315 7222 5.167121 TGATATGCGTTTTGGTTTGATTGG 58.833 37.500 0.00 0.00 0.00 3.16
6316 7223 6.702972 TTGATATGCGTTTTGGTTTGATTG 57.297 33.333 0.00 0.00 0.00 2.67
6464 7372 5.918608 TCTTCTATAGAGCCACCATCAAAC 58.081 41.667 2.02 0.00 0.00 2.93
6659 7567 8.164070 AGATTGGACAGTAAAAACAACCTCTAT 58.836 33.333 0.00 0.00 0.00 1.98
6673 7581 4.032960 ACAATTGCCAGATTGGACAGTA 57.967 40.909 5.05 0.00 40.96 2.74
6674 7582 2.880443 ACAATTGCCAGATTGGACAGT 58.120 42.857 5.05 0.00 40.96 3.55
6675 7583 3.947910 AACAATTGCCAGATTGGACAG 57.052 42.857 5.05 0.00 40.96 3.51
6676 7584 3.387374 ACAAACAATTGCCAGATTGGACA 59.613 39.130 5.05 0.00 39.92 4.02
6677 7585 3.989817 GACAAACAATTGCCAGATTGGAC 59.010 43.478 5.05 0.42 39.92 4.02
6678 7586 3.305267 CGACAAACAATTGCCAGATTGGA 60.305 43.478 5.05 0.00 39.92 3.53
6679 7587 2.988493 CGACAAACAATTGCCAGATTGG 59.012 45.455 5.05 0.00 40.50 3.16
6766 7683 9.566432 AAGAATCTACCAGATATTCATTTCACC 57.434 33.333 0.00 0.00 32.89 4.02
6789 7707 5.690865 TCCTCCAAAAGCAGAAGTAAAAGA 58.309 37.500 0.00 0.00 0.00 2.52
6795 7713 3.795688 TCATCCTCCAAAAGCAGAAGT 57.204 42.857 0.00 0.00 0.00 3.01
6799 7717 2.479049 CGCATTCATCCTCCAAAAGCAG 60.479 50.000 0.00 0.00 0.00 4.24
6805 7723 2.091541 GAAACCGCATTCATCCTCCAA 58.908 47.619 0.00 0.00 0.00 3.53
6819 7737 2.358267 ACTCCTATCACTAGCGAAACCG 59.642 50.000 0.00 0.00 0.00 4.44
6836 7754 4.193826 TGAGCTATGAAGTGTTCACTCC 57.806 45.455 5.91 0.00 43.48 3.85
6909 7827 5.637810 TCGTACTAGCTTTTGAGTTTCCATG 59.362 40.000 0.00 0.00 0.00 3.66
6910 7828 5.790593 TCGTACTAGCTTTTGAGTTTCCAT 58.209 37.500 0.00 0.00 0.00 3.41
6911 7829 5.204409 TCGTACTAGCTTTTGAGTTTCCA 57.796 39.130 0.00 0.00 0.00 3.53
6912 7830 5.228665 ACTCGTACTAGCTTTTGAGTTTCC 58.771 41.667 0.00 0.00 33.15 3.13
6913 7831 5.919141 TGACTCGTACTAGCTTTTGAGTTTC 59.081 40.000 0.00 0.00 36.86 2.78
6914 7832 5.839621 TGACTCGTACTAGCTTTTGAGTTT 58.160 37.500 0.00 0.00 36.86 2.66
6915 7833 5.449107 TGACTCGTACTAGCTTTTGAGTT 57.551 39.130 0.00 0.00 36.86 3.01
6930 7871 2.479566 AGCCAAACATGATGACTCGT 57.520 45.000 0.00 0.00 0.00 4.18
6931 7872 3.005554 AGAAGCCAAACATGATGACTCG 58.994 45.455 0.00 0.00 0.00 4.18
6951 7895 8.888579 ACGTAAATAATTTGGTGAGGAGATAG 57.111 34.615 0.00 0.00 0.00 2.08
7018 7962 9.888878 CAAATAATATCCACAGTAGCATTTCAG 57.111 33.333 0.00 0.00 0.00 3.02
7022 7966 9.407380 TGTTCAAATAATATCCACAGTAGCATT 57.593 29.630 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.