Multiple sequence alignment - TraesCS3D01G353200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G353200 chr3D 100.000 3269 0 0 1 3269 463812478 463809210 0.000000e+00 6037.0
1 TraesCS3D01G353200 chr3B 92.799 2347 94 21 620 2949 617269210 617266922 0.000000e+00 3328.0
2 TraesCS3D01G353200 chr3B 96.416 279 10 0 2991 3269 617266824 617266546 8.260000e-126 460.0
3 TraesCS3D01G353200 chr3B 93.277 119 6 2 330 447 308386946 308386829 1.210000e-39 174.0
4 TraesCS3D01G353200 chr3A 93.124 2298 94 20 612 2854 606830980 606828692 0.000000e+00 3310.0
5 TraesCS3D01G353200 chr3A 88.095 336 21 8 1 318 740907811 740908145 6.620000e-102 381.0
6 TraesCS3D01G353200 chr3A 86.071 280 32 6 2991 3269 606828375 606828102 8.870000e-76 294.0
7 TraesCS3D01G353200 chr3A 91.339 127 10 1 326 451 108378995 108378869 4.340000e-39 172.0
8 TraesCS3D01G353200 chr4D 86.975 1167 93 26 1293 2454 42238308 42237196 0.000000e+00 1258.0
9 TraesCS3D01G353200 chr4D 92.623 122 9 0 330 451 55352441 55352562 3.350000e-40 176.0
10 TraesCS3D01G353200 chr4D 94.828 58 3 0 3211 3268 42235226 42235169 1.250000e-14 91.6
11 TraesCS3D01G353200 chr4D 97.297 37 1 0 2473 2509 42237197 42237161 2.720000e-06 63.9
12 TraesCS3D01G353200 chr4A 86.604 1172 106 20 1293 2454 597458292 597457162 0.000000e+00 1247.0
13 TraesCS3D01G353200 chr4A 86.177 1172 111 21 1293 2454 597637168 597636038 0.000000e+00 1219.0
14 TraesCS3D01G353200 chr4A 86.092 1172 112 20 1293 2454 597590707 597589577 0.000000e+00 1214.0
15 TraesCS3D01G353200 chr4A 85.653 1171 119 20 1293 2454 597648545 597647415 0.000000e+00 1186.0
16 TraesCS3D01G353200 chr4A 87.055 618 67 8 1843 2454 597617329 597616719 0.000000e+00 686.0
17 TraesCS3D01G353200 chr4A 77.703 444 60 9 1217 1656 635600403 635599995 5.450000e-58 235.0
18 TraesCS3D01G353200 chr4A 93.284 134 9 0 1293 1426 597617490 597617357 7.150000e-47 198.0
19 TraesCS3D01G353200 chr4A 96.610 59 2 0 3211 3269 597344147 597344089 7.460000e-17 99.0
20 TraesCS3D01G353200 chr4A 94.915 59 3 0 3211 3269 597474554 597474496 3.470000e-15 93.5
21 TraesCS3D01G353200 chr1B 84.403 1013 135 17 1061 2063 511451794 511452793 0.000000e+00 974.0
22 TraesCS3D01G353200 chr1B 90.551 127 10 2 323 448 8855860 8855985 2.020000e-37 167.0
23 TraesCS3D01G353200 chr1A 84.221 1014 135 19 1061 2063 481932980 481933979 0.000000e+00 963.0
24 TraesCS3D01G353200 chr1D 84.337 996 136 15 1075 2063 381313996 381314978 0.000000e+00 957.0
25 TraesCS3D01G353200 chr1D 92.216 334 7 9 1 315 18212839 18212506 3.850000e-124 455.0
26 TraesCS3D01G353200 chr1D 87.798 336 21 2 1 317 71344763 71344429 3.080000e-100 375.0
27 TraesCS3D01G353200 chr1D 92.437 119 9 0 329 447 344594114 344594232 1.560000e-38 171.0
28 TraesCS3D01G353200 chr1D 83.065 124 14 5 120 236 477490079 477490202 4.460000e-19 106.0
29 TraesCS3D01G353200 chr1D 97.143 35 1 0 184 218 18212586 18212552 3.520000e-05 60.2
30 TraesCS3D01G353200 chr7D 98.403 313 5 0 1 313 17178978 17178666 4.770000e-153 551.0
31 TraesCS3D01G353200 chr7D 97.476 317 8 0 1 317 592750324 592750008 2.870000e-150 542.0
32 TraesCS3D01G353200 chr7D 96.845 317 10 0 1 317 198698847 198698531 6.210000e-147 531.0
33 TraesCS3D01G353200 chr7D 85.922 206 27 2 1075 1280 584232251 584232048 5.490000e-53 219.0
34 TraesCS3D01G353200 chr2B 90.833 360 21 4 2591 2946 737750966 737750615 3.820000e-129 472.0
35 TraesCS3D01G353200 chr2B 77.778 189 33 8 129 315 776382626 776382807 1.240000e-19 108.0
36 TraesCS3D01G353200 chr4B 90.437 366 22 5 2588 2949 560558227 560557871 1.370000e-128 470.0
37 TraesCS3D01G353200 chr4B 91.200 125 10 1 324 447 564869461 564869585 5.610000e-38 169.0
38 TraesCS3D01G353200 chr5A 91.935 124 10 0 323 446 646001221 646001344 1.210000e-39 174.0
39 TraesCS3D01G353200 chr5A 91.803 122 10 0 326 447 353861767 353861888 1.560000e-38 171.0
40 TraesCS3D01G353200 chr2A 92.000 125 7 3 324 447 539014576 539014698 4.340000e-39 172.0
41 TraesCS3D01G353200 chr2A 75.150 334 62 9 2 317 750994845 750994515 1.580000e-28 137.0
42 TraesCS3D01G353200 chr6B 79.688 192 34 5 129 318 34112041 34111853 2.050000e-27 134.0
43 TraesCS3D01G353200 chr7B 93.878 49 3 0 273 321 697112994 697113042 1.260000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G353200 chr3D 463809210 463812478 3268 True 6037.000000 6037 100.000000 1 3269 1 chr3D.!!$R1 3268
1 TraesCS3D01G353200 chr3B 617266546 617269210 2664 True 1894.000000 3328 94.607500 620 3269 2 chr3B.!!$R2 2649
2 TraesCS3D01G353200 chr3A 606828102 606830980 2878 True 1802.000000 3310 89.597500 612 3269 2 chr3A.!!$R2 2657
3 TraesCS3D01G353200 chr4D 42235169 42238308 3139 True 471.166667 1258 93.033333 1293 3268 3 chr4D.!!$R1 1975
4 TraesCS3D01G353200 chr4A 597457162 597458292 1130 True 1247.000000 1247 86.604000 1293 2454 1 chr4A.!!$R2 1161
5 TraesCS3D01G353200 chr4A 597636038 597637168 1130 True 1219.000000 1219 86.177000 1293 2454 1 chr4A.!!$R5 1161
6 TraesCS3D01G353200 chr4A 597589577 597590707 1130 True 1214.000000 1214 86.092000 1293 2454 1 chr4A.!!$R4 1161
7 TraesCS3D01G353200 chr4A 597647415 597648545 1130 True 1186.000000 1186 85.653000 1293 2454 1 chr4A.!!$R6 1161
8 TraesCS3D01G353200 chr4A 597616719 597617490 771 True 442.000000 686 90.169500 1293 2454 2 chr4A.!!$R8 1161
9 TraesCS3D01G353200 chr1B 511451794 511452793 999 False 974.000000 974 84.403000 1061 2063 1 chr1B.!!$F2 1002
10 TraesCS3D01G353200 chr1A 481932980 481933979 999 False 963.000000 963 84.221000 1061 2063 1 chr1A.!!$F1 1002
11 TraesCS3D01G353200 chr1D 381313996 381314978 982 False 957.000000 957 84.337000 1075 2063 1 chr1D.!!$F2 988

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 287 0.039888 TGGTTTTAGCTTTTCGCCGC 60.040 50.0 0.00 0.0 40.39 6.53 F
326 327 0.041535 TCCGCCCTTGGAAGGTAGTA 59.958 55.0 4.72 0.0 44.98 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 2144 3.583276 GACGTCCGGTGTCATGGCA 62.583 63.158 19.97 0.0 36.37 4.92 R
2410 2471 7.288852 TCAGGTGAAGAAACCAAAAATAATGGA 59.711 33.333 0.00 0.0 43.20 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.272545 TGAATCTCCACAATCTACAAATCAAG 57.727 34.615 0.00 0.00 0.00 3.02
26 27 7.337689 TGAATCTCCACAATCTACAAATCAAGG 59.662 37.037 0.00 0.00 0.00 3.61
27 28 6.126863 TCTCCACAATCTACAAATCAAGGT 57.873 37.500 0.00 0.00 0.00 3.50
28 29 7.252612 TCTCCACAATCTACAAATCAAGGTA 57.747 36.000 0.00 0.00 0.00 3.08
29 30 7.685481 TCTCCACAATCTACAAATCAAGGTAA 58.315 34.615 0.00 0.00 0.00 2.85
30 31 8.328758 TCTCCACAATCTACAAATCAAGGTAAT 58.671 33.333 0.00 0.00 0.00 1.89
31 32 8.506168 TCCACAATCTACAAATCAAGGTAATC 57.494 34.615 0.00 0.00 0.00 1.75
32 33 8.328758 TCCACAATCTACAAATCAAGGTAATCT 58.671 33.333 0.00 0.00 0.00 2.40
33 34 8.960591 CCACAATCTACAAATCAAGGTAATCTT 58.039 33.333 0.00 0.00 35.79 2.40
34 35 9.994432 CACAATCTACAAATCAAGGTAATCTTC 57.006 33.333 0.00 0.00 32.41 2.87
35 36 9.965902 ACAATCTACAAATCAAGGTAATCTTCT 57.034 29.630 0.00 0.00 32.41 2.85
44 45 5.869579 TCAAGGTAATCTTCTTGAACTGCT 58.130 37.500 3.63 0.00 44.14 4.24
45 46 5.702670 TCAAGGTAATCTTCTTGAACTGCTG 59.297 40.000 3.63 0.00 44.14 4.41
46 47 5.489792 AGGTAATCTTCTTGAACTGCTGA 57.510 39.130 0.00 0.00 0.00 4.26
47 48 5.869579 AGGTAATCTTCTTGAACTGCTGAA 58.130 37.500 0.00 0.00 0.00 3.02
48 49 5.936956 AGGTAATCTTCTTGAACTGCTGAAG 59.063 40.000 0.00 0.00 37.75 3.02
49 50 4.762956 AATCTTCTTGAACTGCTGAAGC 57.237 40.909 0.00 0.00 42.50 3.86
50 51 3.482156 TCTTCTTGAACTGCTGAAGCT 57.518 42.857 3.61 0.00 42.66 3.74
51 52 3.136763 TCTTCTTGAACTGCTGAAGCTG 58.863 45.455 7.56 7.56 44.21 4.24
71 72 6.796629 GCTGTTGGCTTATTTATTTTCTCG 57.203 37.500 0.00 0.00 38.06 4.04
72 73 6.551736 GCTGTTGGCTTATTTATTTTCTCGA 58.448 36.000 0.00 0.00 38.06 4.04
73 74 7.027161 GCTGTTGGCTTATTTATTTTCTCGAA 58.973 34.615 0.00 0.00 38.06 3.71
74 75 7.008357 GCTGTTGGCTTATTTATTTTCTCGAAC 59.992 37.037 0.00 0.00 38.06 3.95
75 76 7.309920 TGTTGGCTTATTTATTTTCTCGAACC 58.690 34.615 0.00 0.00 0.00 3.62
76 77 7.040340 TGTTGGCTTATTTATTTTCTCGAACCA 60.040 33.333 0.00 0.00 0.00 3.67
77 78 7.639113 TGGCTTATTTATTTTCTCGAACCAT 57.361 32.000 0.00 0.00 0.00 3.55
78 79 8.062065 TGGCTTATTTATTTTCTCGAACCATT 57.938 30.769 0.00 0.00 0.00 3.16
79 80 7.973388 TGGCTTATTTATTTTCTCGAACCATTG 59.027 33.333 0.00 0.00 0.00 2.82
80 81 8.188139 GGCTTATTTATTTTCTCGAACCATTGA 58.812 33.333 0.00 0.00 0.00 2.57
81 82 9.567848 GCTTATTTATTTTCTCGAACCATTGAA 57.432 29.630 0.00 0.00 0.00 2.69
85 86 8.795786 TTTATTTTCTCGAACCATTGAAGTTG 57.204 30.769 0.00 0.00 0.00 3.16
86 87 5.828299 TTTTCTCGAACCATTGAAGTTGT 57.172 34.783 0.00 0.00 0.00 3.32
87 88 5.828299 TTTCTCGAACCATTGAAGTTGTT 57.172 34.783 0.00 0.00 0.00 2.83
88 89 4.811555 TCTCGAACCATTGAAGTTGTTG 57.188 40.909 0.00 0.00 0.00 3.33
89 90 3.003275 TCTCGAACCATTGAAGTTGTTGC 59.997 43.478 0.00 0.00 0.00 4.17
90 91 2.034053 TCGAACCATTGAAGTTGTTGCC 59.966 45.455 0.00 0.00 0.00 4.52
91 92 2.034558 CGAACCATTGAAGTTGTTGCCT 59.965 45.455 0.00 0.00 0.00 4.75
92 93 3.490761 CGAACCATTGAAGTTGTTGCCTT 60.491 43.478 0.00 0.00 0.00 4.35
93 94 4.261405 CGAACCATTGAAGTTGTTGCCTTA 60.261 41.667 0.00 0.00 0.00 2.69
94 95 5.564651 CGAACCATTGAAGTTGTTGCCTTAT 60.565 40.000 0.00 0.00 0.00 1.73
95 96 5.806654 ACCATTGAAGTTGTTGCCTTATT 57.193 34.783 0.00 0.00 0.00 1.40
96 97 6.909550 ACCATTGAAGTTGTTGCCTTATTA 57.090 33.333 0.00 0.00 0.00 0.98
97 98 7.480760 ACCATTGAAGTTGTTGCCTTATTAT 57.519 32.000 0.00 0.00 0.00 1.28
98 99 8.588290 ACCATTGAAGTTGTTGCCTTATTATA 57.412 30.769 0.00 0.00 0.00 0.98
99 100 8.686334 ACCATTGAAGTTGTTGCCTTATTATAG 58.314 33.333 0.00 0.00 0.00 1.31
100 101 7.649306 CCATTGAAGTTGTTGCCTTATTATAGC 59.351 37.037 0.00 0.00 0.00 2.97
101 102 7.695480 TTGAAGTTGTTGCCTTATTATAGCA 57.305 32.000 0.00 0.00 33.97 3.49
102 103 7.695480 TGAAGTTGTTGCCTTATTATAGCAA 57.305 32.000 0.00 0.00 43.83 3.91
122 123 9.903682 ATAGCAAATAAATGATGTTGTCTATGC 57.096 29.630 0.00 0.00 0.00 3.14
123 124 6.914215 AGCAAATAAATGATGTTGTCTATGCG 59.086 34.615 0.00 0.00 0.00 4.73
124 125 6.912051 GCAAATAAATGATGTTGTCTATGCGA 59.088 34.615 0.00 0.00 0.00 5.10
125 126 7.431960 GCAAATAAATGATGTTGTCTATGCGAA 59.568 33.333 0.00 0.00 0.00 4.70
126 127 8.736742 CAAATAAATGATGTTGTCTATGCGAAC 58.263 33.333 0.00 0.00 0.00 3.95
127 128 7.792374 ATAAATGATGTTGTCTATGCGAACT 57.208 32.000 0.00 0.00 0.00 3.01
128 129 8.887036 ATAAATGATGTTGTCTATGCGAACTA 57.113 30.769 0.00 0.00 0.00 2.24
129 130 7.792374 AAATGATGTTGTCTATGCGAACTAT 57.208 32.000 0.00 0.00 0.00 2.12
130 131 8.887036 AAATGATGTTGTCTATGCGAACTATA 57.113 30.769 0.00 0.00 0.00 1.31
131 132 7.875316 ATGATGTTGTCTATGCGAACTATAC 57.125 36.000 0.00 0.00 0.00 1.47
132 133 6.213677 TGATGTTGTCTATGCGAACTATACC 58.786 40.000 0.00 0.00 0.00 2.73
133 134 5.847111 TGTTGTCTATGCGAACTATACCT 57.153 39.130 0.00 0.00 0.00 3.08
134 135 6.947644 TGTTGTCTATGCGAACTATACCTA 57.052 37.500 0.00 0.00 0.00 3.08
135 136 6.732154 TGTTGTCTATGCGAACTATACCTAC 58.268 40.000 0.00 0.00 0.00 3.18
136 137 6.319405 TGTTGTCTATGCGAACTATACCTACA 59.681 38.462 0.00 0.00 0.00 2.74
137 138 7.013942 TGTTGTCTATGCGAACTATACCTACAT 59.986 37.037 0.00 0.00 0.00 2.29
138 139 8.509690 GTTGTCTATGCGAACTATACCTACATA 58.490 37.037 0.00 0.00 0.00 2.29
139 140 8.803397 TGTCTATGCGAACTATACCTACATAT 57.197 34.615 0.00 0.00 0.00 1.78
140 141 8.890718 TGTCTATGCGAACTATACCTACATATC 58.109 37.037 0.00 0.00 0.00 1.63
141 142 8.063038 GTCTATGCGAACTATACCTACATATCG 58.937 40.741 0.00 0.00 0.00 2.92
142 143 6.754702 ATGCGAACTATACCTACATATCGT 57.245 37.500 0.00 0.00 0.00 3.73
143 144 5.934921 TGCGAACTATACCTACATATCGTG 58.065 41.667 0.00 0.00 0.00 4.35
144 145 4.792189 GCGAACTATACCTACATATCGTGC 59.208 45.833 0.00 0.00 0.00 5.34
145 146 5.618418 GCGAACTATACCTACATATCGTGCA 60.618 44.000 0.00 0.00 0.00 4.57
146 147 6.376177 CGAACTATACCTACATATCGTGCAA 58.624 40.000 0.00 0.00 0.00 4.08
147 148 6.859508 CGAACTATACCTACATATCGTGCAAA 59.140 38.462 0.00 0.00 0.00 3.68
148 149 7.380333 CGAACTATACCTACATATCGTGCAAAA 59.620 37.037 0.00 0.00 0.00 2.44
149 150 8.951787 AACTATACCTACATATCGTGCAAAAA 57.048 30.769 0.00 0.00 0.00 1.94
150 151 8.589335 ACTATACCTACATATCGTGCAAAAAG 57.411 34.615 0.00 0.00 0.00 2.27
151 152 8.418662 ACTATACCTACATATCGTGCAAAAAGA 58.581 33.333 0.00 0.00 0.00 2.52
152 153 9.256477 CTATACCTACATATCGTGCAAAAAGAA 57.744 33.333 0.00 0.00 0.00 2.52
153 154 6.811253 ACCTACATATCGTGCAAAAAGAAA 57.189 33.333 0.00 0.00 0.00 2.52
154 155 7.391148 ACCTACATATCGTGCAAAAAGAAAT 57.609 32.000 0.00 0.00 0.00 2.17
155 156 7.826690 ACCTACATATCGTGCAAAAAGAAATT 58.173 30.769 0.00 0.00 0.00 1.82
156 157 7.968405 ACCTACATATCGTGCAAAAAGAAATTC 59.032 33.333 0.00 0.00 0.00 2.17
157 158 8.184192 CCTACATATCGTGCAAAAAGAAATTCT 58.816 33.333 0.00 0.00 0.00 2.40
158 159 9.559958 CTACATATCGTGCAAAAAGAAATTCTT 57.440 29.630 1.80 1.80 38.59 2.52
160 161 9.906660 ACATATCGTGCAAAAAGAAATTCTTAA 57.093 25.926 8.83 0.00 35.27 1.85
163 164 8.871686 ATCGTGCAAAAAGAAATTCTTAAGTT 57.128 26.923 8.83 1.55 35.27 2.66
164 165 8.696410 TCGTGCAAAAAGAAATTCTTAAGTTT 57.304 26.923 8.83 3.60 35.27 2.66
165 166 8.803799 TCGTGCAAAAAGAAATTCTTAAGTTTC 58.196 29.630 8.83 9.48 35.27 2.78
166 167 8.807581 CGTGCAAAAAGAAATTCTTAAGTTTCT 58.192 29.630 8.83 12.87 44.24 2.52
186 187 9.770503 AGTTTCTTTCTCGAAAAGTTTAGAAAC 57.229 29.630 20.39 20.39 41.48 2.78
187 188 8.722368 GTTTCTTTCTCGAAAAGTTTAGAAACG 58.278 33.333 16.34 9.99 43.51 3.60
188 189 7.760131 TCTTTCTCGAAAAGTTTAGAAACGA 57.240 32.000 15.14 7.29 43.51 3.85
189 190 8.188531 TCTTTCTCGAAAAGTTTAGAAACGAA 57.811 30.769 15.14 1.21 43.51 3.85
190 191 8.823818 TCTTTCTCGAAAAGTTTAGAAACGAAT 58.176 29.630 15.14 0.00 43.51 3.34
191 192 9.434559 CTTTCTCGAAAAGTTTAGAAACGAATT 57.565 29.630 7.62 0.00 43.51 2.17
194 195 9.467258 TCTCGAAAAGTTTAGAAACGAATTAGA 57.533 29.630 0.00 2.79 43.51 2.10
195 196 9.728774 CTCGAAAAGTTTAGAAACGAATTAGAG 57.271 33.333 0.00 11.85 43.51 2.43
196 197 9.467258 TCGAAAAGTTTAGAAACGAATTAGAGA 57.533 29.630 0.00 0.00 43.51 3.10
202 203 9.760077 AGTTTAGAAACGAATTAGAGAAGAACA 57.240 29.630 0.00 0.00 43.51 3.18
237 238 9.524496 AATAGTGTTATGTATATGGTAGACGGA 57.476 33.333 0.00 0.00 0.00 4.69
238 239 7.828508 AGTGTTATGTATATGGTAGACGGAA 57.171 36.000 0.00 0.00 0.00 4.30
239 240 7.655490 AGTGTTATGTATATGGTAGACGGAAC 58.345 38.462 0.00 0.00 0.00 3.62
240 241 7.504911 AGTGTTATGTATATGGTAGACGGAACT 59.495 37.037 0.00 0.00 0.00 3.01
241 242 8.139989 GTGTTATGTATATGGTAGACGGAACTT 58.860 37.037 0.00 0.00 0.00 2.66
242 243 8.355169 TGTTATGTATATGGTAGACGGAACTTC 58.645 37.037 0.00 0.00 0.00 3.01
243 244 6.971726 ATGTATATGGTAGACGGAACTTCA 57.028 37.500 0.00 0.00 0.00 3.02
244 245 6.387041 TGTATATGGTAGACGGAACTTCAG 57.613 41.667 0.00 0.00 0.00 3.02
245 246 6.124340 TGTATATGGTAGACGGAACTTCAGA 58.876 40.000 0.00 0.00 0.00 3.27
246 247 6.776116 TGTATATGGTAGACGGAACTTCAGAT 59.224 38.462 0.00 0.00 0.00 2.90
247 248 3.868757 TGGTAGACGGAACTTCAGATG 57.131 47.619 0.00 0.00 0.00 2.90
248 249 3.427573 TGGTAGACGGAACTTCAGATGA 58.572 45.455 0.00 0.00 0.00 2.92
249 250 3.830178 TGGTAGACGGAACTTCAGATGAA 59.170 43.478 0.00 0.00 0.00 2.57
250 251 4.466370 TGGTAGACGGAACTTCAGATGAAT 59.534 41.667 0.00 0.00 33.01 2.57
251 252 5.046591 TGGTAGACGGAACTTCAGATGAATT 60.047 40.000 0.00 0.00 33.01 2.17
252 253 6.153851 TGGTAGACGGAACTTCAGATGAATTA 59.846 38.462 0.00 0.00 33.01 1.40
253 254 6.476053 GGTAGACGGAACTTCAGATGAATTAC 59.524 42.308 0.00 0.00 33.01 1.89
254 255 6.037786 AGACGGAACTTCAGATGAATTACA 57.962 37.500 0.00 0.00 33.01 2.41
255 256 6.464222 AGACGGAACTTCAGATGAATTACAA 58.536 36.000 0.00 0.00 33.01 2.41
256 257 7.106239 AGACGGAACTTCAGATGAATTACAAT 58.894 34.615 0.00 0.00 33.01 2.71
257 258 7.065085 AGACGGAACTTCAGATGAATTACAATG 59.935 37.037 0.00 0.00 33.01 2.82
258 259 6.878923 ACGGAACTTCAGATGAATTACAATGA 59.121 34.615 0.00 0.00 33.01 2.57
259 260 7.390440 ACGGAACTTCAGATGAATTACAATGAA 59.610 33.333 0.00 0.00 36.57 2.57
260 261 8.400947 CGGAACTTCAGATGAATTACAATGAAT 58.599 33.333 0.00 0.00 37.51 2.57
282 283 9.405587 TGAATAAGAAATGGTTTTAGCTTTTCG 57.594 29.630 0.00 0.00 41.58 3.46
283 284 7.812309 ATAAGAAATGGTTTTAGCTTTTCGC 57.188 32.000 0.00 0.00 41.58 4.70
284 285 4.556233 AGAAATGGTTTTAGCTTTTCGCC 58.444 39.130 0.00 0.00 41.58 5.54
285 286 2.629639 ATGGTTTTAGCTTTTCGCCG 57.370 45.000 0.00 0.00 40.39 6.46
286 287 0.039888 TGGTTTTAGCTTTTCGCCGC 60.040 50.000 0.00 0.00 40.39 6.53
287 288 0.731514 GGTTTTAGCTTTTCGCCGCC 60.732 55.000 0.00 0.00 40.39 6.13
288 289 0.731514 GTTTTAGCTTTTCGCCGCCC 60.732 55.000 0.00 0.00 40.39 6.13
289 290 0.891904 TTTTAGCTTTTCGCCGCCCT 60.892 50.000 0.00 0.00 40.39 5.19
290 291 1.303091 TTTAGCTTTTCGCCGCCCTC 61.303 55.000 0.00 0.00 40.39 4.30
291 292 2.457743 TTAGCTTTTCGCCGCCCTCA 62.458 55.000 0.00 0.00 40.39 3.86
292 293 2.252072 TAGCTTTTCGCCGCCCTCAT 62.252 55.000 0.00 0.00 40.39 2.90
293 294 2.793946 CTTTTCGCCGCCCTCATG 59.206 61.111 0.00 0.00 0.00 3.07
294 295 2.033448 TTTTCGCCGCCCTCATGT 59.967 55.556 0.00 0.00 0.00 3.21
295 296 1.982073 CTTTTCGCCGCCCTCATGTC 61.982 60.000 0.00 0.00 0.00 3.06
296 297 3.969250 TTTCGCCGCCCTCATGTCC 62.969 63.158 0.00 0.00 0.00 4.02
298 299 4.776322 CGCCGCCCTCATGTCCAA 62.776 66.667 0.00 0.00 0.00 3.53
299 300 2.361104 GCCGCCCTCATGTCCAAA 60.361 61.111 0.00 0.00 0.00 3.28
300 301 1.754234 GCCGCCCTCATGTCCAAAT 60.754 57.895 0.00 0.00 0.00 2.32
301 302 1.728490 GCCGCCCTCATGTCCAAATC 61.728 60.000 0.00 0.00 0.00 2.17
302 303 1.103398 CCGCCCTCATGTCCAAATCC 61.103 60.000 0.00 0.00 0.00 3.01
303 304 0.107017 CGCCCTCATGTCCAAATCCT 60.107 55.000 0.00 0.00 0.00 3.24
304 305 1.396653 GCCCTCATGTCCAAATCCTG 58.603 55.000 0.00 0.00 0.00 3.86
306 307 1.396653 CCTCATGTCCAAATCCTGGC 58.603 55.000 0.00 0.00 45.98 4.85
307 308 1.064166 CCTCATGTCCAAATCCTGGCT 60.064 52.381 0.00 0.00 45.98 4.75
308 309 2.295885 CTCATGTCCAAATCCTGGCTC 58.704 52.381 0.00 0.00 45.98 4.70
309 310 1.064463 TCATGTCCAAATCCTGGCTCC 60.064 52.381 0.00 0.00 45.98 4.70
310 311 0.107017 ATGTCCAAATCCTGGCTCCG 60.107 55.000 0.00 0.00 45.98 4.63
311 312 2.115291 GTCCAAATCCTGGCTCCGC 61.115 63.158 0.00 0.00 45.98 5.54
321 322 4.803908 GGCTCCGCCCTTGGAAGG 62.804 72.222 0.00 0.00 44.06 3.46
322 323 4.035102 GCTCCGCCCTTGGAAGGT 62.035 66.667 4.72 0.00 44.98 3.50
323 324 2.666098 GCTCCGCCCTTGGAAGGTA 61.666 63.158 4.72 0.00 44.98 3.08
324 325 1.522569 CTCCGCCCTTGGAAGGTAG 59.477 63.158 4.72 0.00 44.98 3.18
325 326 1.229400 TCCGCCCTTGGAAGGTAGT 60.229 57.895 4.72 0.00 44.98 2.73
326 327 0.041535 TCCGCCCTTGGAAGGTAGTA 59.958 55.000 4.72 0.00 44.98 1.82
327 328 1.129058 CCGCCCTTGGAAGGTAGTAT 58.871 55.000 4.72 0.00 44.98 2.12
328 329 2.091166 TCCGCCCTTGGAAGGTAGTATA 60.091 50.000 4.72 0.00 44.98 1.47
329 330 2.904434 CCGCCCTTGGAAGGTAGTATAT 59.096 50.000 4.72 0.00 44.98 0.86
330 331 4.091549 CCGCCCTTGGAAGGTAGTATATA 58.908 47.826 4.72 0.00 44.98 0.86
331 332 4.081807 CCGCCCTTGGAAGGTAGTATATAC 60.082 50.000 4.60 4.60 44.98 1.47
332 333 4.771054 CGCCCTTGGAAGGTAGTATATACT 59.229 45.833 19.07 19.07 44.98 2.12
333 334 5.105837 CGCCCTTGGAAGGTAGTATATACTC 60.106 48.000 18.68 10.44 44.98 2.59
334 335 5.187381 GCCCTTGGAAGGTAGTATATACTCC 59.813 48.000 18.68 17.76 44.98 3.85
335 336 5.720520 CCCTTGGAAGGTAGTATATACTCCC 59.279 48.000 18.68 16.73 44.98 4.30
336 337 6.470420 CCCTTGGAAGGTAGTATATACTCCCT 60.470 46.154 18.78 18.78 43.55 4.20
337 338 6.664384 CCTTGGAAGGTAGTATATACTCCCTC 59.336 46.154 23.20 18.48 41.20 4.30
338 339 6.150034 TGGAAGGTAGTATATACTCCCTCC 57.850 45.833 23.20 24.18 41.20 4.30
339 340 5.192176 GGAAGGTAGTATATACTCCCTCCG 58.808 50.000 23.20 0.00 41.20 4.63
340 341 5.280934 GGAAGGTAGTATATACTCCCTCCGT 60.281 48.000 23.20 16.48 41.20 4.69
341 342 5.857106 AGGTAGTATATACTCCCTCCGTT 57.143 43.478 18.78 0.10 38.10 4.44
342 343 5.568392 AGGTAGTATATACTCCCTCCGTTG 58.432 45.833 18.78 0.00 38.10 4.10
343 344 5.311649 AGGTAGTATATACTCCCTCCGTTGA 59.688 44.000 18.78 0.00 38.10 3.18
344 345 6.006449 GGTAGTATATACTCCCTCCGTTGAA 58.994 44.000 18.68 0.00 37.73 2.69
345 346 6.491403 GGTAGTATATACTCCCTCCGTTGAAA 59.509 42.308 18.68 0.00 37.73 2.69
346 347 7.014615 GGTAGTATATACTCCCTCCGTTGAAAA 59.985 40.741 18.68 0.00 37.73 2.29
347 348 7.427989 AGTATATACTCCCTCCGTTGAAAAA 57.572 36.000 9.71 0.00 0.00 1.94
368 369 6.951256 AAAAACTTGTCTCAAGCTTGTTTC 57.049 33.333 25.19 16.00 0.00 2.78
369 370 5.904362 AAACTTGTCTCAAGCTTGTTTCT 57.096 34.783 25.19 1.20 0.00 2.52
370 371 5.491635 AACTTGTCTCAAGCTTGTTTCTC 57.508 39.130 25.19 12.90 0.00 2.87
371 372 4.517285 ACTTGTCTCAAGCTTGTTTCTCA 58.483 39.130 25.19 15.00 0.00 3.27
372 373 4.943705 ACTTGTCTCAAGCTTGTTTCTCAA 59.056 37.500 25.19 19.91 34.61 3.02
373 374 5.415701 ACTTGTCTCAAGCTTGTTTCTCAAA 59.584 36.000 25.19 11.13 35.48 2.69
374 375 6.096001 ACTTGTCTCAAGCTTGTTTCTCAAAT 59.904 34.615 25.19 11.93 35.48 2.32
375 376 5.824429 TGTCTCAAGCTTGTTTCTCAAATG 58.176 37.500 25.19 0.00 35.48 2.32
376 377 5.218139 GTCTCAAGCTTGTTTCTCAAATGG 58.782 41.667 25.19 0.00 35.48 3.16
377 378 5.009010 GTCTCAAGCTTGTTTCTCAAATGGA 59.991 40.000 25.19 1.02 35.48 3.41
378 379 5.771666 TCTCAAGCTTGTTTCTCAAATGGAT 59.228 36.000 25.19 0.00 35.48 3.41
379 380 5.775686 TCAAGCTTGTTTCTCAAATGGATG 58.224 37.500 25.19 0.00 35.48 3.51
380 381 5.302568 TCAAGCTTGTTTCTCAAATGGATGT 59.697 36.000 25.19 0.00 35.48 3.06
381 382 6.489700 TCAAGCTTGTTTCTCAAATGGATGTA 59.510 34.615 25.19 0.00 35.48 2.29
382 383 7.177216 TCAAGCTTGTTTCTCAAATGGATGTAT 59.823 33.333 25.19 0.00 35.48 2.29
383 384 7.093322 AGCTTGTTTCTCAAATGGATGTATC 57.907 36.000 0.00 0.00 35.48 2.24
384 385 6.888632 AGCTTGTTTCTCAAATGGATGTATCT 59.111 34.615 0.00 0.00 35.48 1.98
385 386 8.049117 AGCTTGTTTCTCAAATGGATGTATCTA 58.951 33.333 0.00 0.00 35.48 1.98
386 387 8.341173 GCTTGTTTCTCAAATGGATGTATCTAG 58.659 37.037 0.00 0.00 35.48 2.43
387 388 7.792374 TGTTTCTCAAATGGATGTATCTAGC 57.208 36.000 0.00 0.00 0.00 3.42
388 389 7.337938 TGTTTCTCAAATGGATGTATCTAGCA 58.662 34.615 0.00 0.00 0.00 3.49
389 390 7.280876 TGTTTCTCAAATGGATGTATCTAGCAC 59.719 37.037 0.00 0.00 0.00 4.40
390 391 6.737720 TCTCAAATGGATGTATCTAGCACT 57.262 37.500 0.00 0.00 0.00 4.40
391 392 7.839680 TCTCAAATGGATGTATCTAGCACTA 57.160 36.000 0.00 0.00 0.00 2.74
392 393 8.250143 TCTCAAATGGATGTATCTAGCACTAA 57.750 34.615 0.00 0.00 0.00 2.24
393 394 8.144478 TCTCAAATGGATGTATCTAGCACTAAC 58.856 37.037 0.00 0.00 0.00 2.34
394 395 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
395 396 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
396 397 9.113838 CAAATGGATGTATCTAGCACTAACTTT 57.886 33.333 0.00 0.00 0.00 2.66
397 398 8.668510 AATGGATGTATCTAGCACTAACTTTG 57.331 34.615 0.00 0.00 0.00 2.77
398 399 7.182817 TGGATGTATCTAGCACTAACTTTGT 57.817 36.000 0.00 0.00 0.00 2.83
399 400 7.041721 TGGATGTATCTAGCACTAACTTTGTG 58.958 38.462 0.00 0.00 38.36 3.33
412 413 8.479313 CACTAACTTTGTGCTAGATACATTCA 57.521 34.615 0.00 0.00 0.00 2.57
413 414 9.102757 CACTAACTTTGTGCTAGATACATTCAT 57.897 33.333 0.00 0.00 0.00 2.57
414 415 9.672673 ACTAACTTTGTGCTAGATACATTCATT 57.327 29.630 0.00 0.00 0.00 2.57
417 418 8.565896 ACTTTGTGCTAGATACATTCATTTGA 57.434 30.769 0.00 0.00 0.00 2.69
418 419 8.671921 ACTTTGTGCTAGATACATTCATTTGAG 58.328 33.333 0.00 0.00 0.00 3.02
419 420 7.558161 TTGTGCTAGATACATTCATTTGAGG 57.442 36.000 0.00 0.00 0.00 3.86
420 421 6.057533 TGTGCTAGATACATTCATTTGAGGG 58.942 40.000 0.00 0.00 0.00 4.30
421 422 6.126796 TGTGCTAGATACATTCATTTGAGGGA 60.127 38.462 0.00 0.00 0.00 4.20
422 423 6.203723 GTGCTAGATACATTCATTTGAGGGAC 59.796 42.308 0.00 0.00 0.00 4.46
423 424 6.126796 TGCTAGATACATTCATTTGAGGGACA 60.127 38.462 0.00 0.00 0.00 4.02
424 425 6.767902 GCTAGATACATTCATTTGAGGGACAA 59.232 38.462 0.00 0.00 36.65 3.18
434 435 4.379339 TTTGAGGGACAAACTTTTTCGG 57.621 40.909 0.00 0.00 42.57 4.30
435 436 3.284793 TGAGGGACAAACTTTTTCGGA 57.715 42.857 0.00 0.00 0.00 4.55
436 437 2.946990 TGAGGGACAAACTTTTTCGGAC 59.053 45.455 0.00 0.00 0.00 4.79
437 438 1.944709 AGGGACAAACTTTTTCGGACG 59.055 47.619 0.00 0.00 0.00 4.79
438 439 1.002142 GGGACAAACTTTTTCGGACGG 60.002 52.381 0.00 0.00 0.00 4.79
439 440 1.941975 GGACAAACTTTTTCGGACGGA 59.058 47.619 0.00 0.00 0.00 4.69
440 441 2.032290 GGACAAACTTTTTCGGACGGAG 60.032 50.000 0.00 0.00 0.00 4.63
441 442 2.867975 GACAAACTTTTTCGGACGGAGA 59.132 45.455 0.00 0.00 0.00 3.71
442 443 2.870411 ACAAACTTTTTCGGACGGAGAG 59.130 45.455 0.00 0.00 0.00 3.20
443 444 3.128349 CAAACTTTTTCGGACGGAGAGA 58.872 45.455 0.00 0.00 0.00 3.10
444 445 2.726832 ACTTTTTCGGACGGAGAGAG 57.273 50.000 0.00 0.00 0.00 3.20
445 446 1.962100 ACTTTTTCGGACGGAGAGAGT 59.038 47.619 0.00 0.00 0.00 3.24
446 447 3.152341 ACTTTTTCGGACGGAGAGAGTA 58.848 45.455 0.00 0.00 0.00 2.59
447 448 3.190953 ACTTTTTCGGACGGAGAGAGTAG 59.809 47.826 0.00 0.00 0.00 2.57
448 449 2.486472 TTTCGGACGGAGAGAGTAGT 57.514 50.000 0.00 0.00 0.00 2.73
449 450 2.486472 TTCGGACGGAGAGAGTAGTT 57.514 50.000 0.00 0.00 0.00 2.24
450 451 3.616956 TTCGGACGGAGAGAGTAGTTA 57.383 47.619 0.00 0.00 0.00 2.24
451 452 3.616956 TCGGACGGAGAGAGTAGTTAA 57.383 47.619 0.00 0.00 0.00 2.01
452 453 3.942829 TCGGACGGAGAGAGTAGTTAAA 58.057 45.455 0.00 0.00 0.00 1.52
453 454 4.521146 TCGGACGGAGAGAGTAGTTAAAT 58.479 43.478 0.00 0.00 0.00 1.40
454 455 4.574013 TCGGACGGAGAGAGTAGTTAAATC 59.426 45.833 0.00 0.00 0.00 2.17
455 456 4.575645 CGGACGGAGAGAGTAGTTAAATCT 59.424 45.833 0.00 0.00 0.00 2.40
456 457 5.504337 CGGACGGAGAGAGTAGTTAAATCTG 60.504 48.000 0.00 0.00 0.00 2.90
457 458 5.357596 GGACGGAGAGAGTAGTTAAATCTGT 59.642 44.000 0.00 0.00 0.00 3.41
458 459 6.439675 ACGGAGAGAGTAGTTAAATCTGTC 57.560 41.667 0.00 0.00 33.74 3.51
459 460 5.357596 ACGGAGAGAGTAGTTAAATCTGTCC 59.642 44.000 8.19 8.19 45.49 4.02
460 461 5.823353 GGAGAGAGTAGTTAAATCTGTCCG 58.177 45.833 3.37 0.00 41.83 4.79
461 462 5.221087 GGAGAGAGTAGTTAAATCTGTCCGG 60.221 48.000 0.00 0.00 41.83 5.14
462 463 5.262804 AGAGAGTAGTTAAATCTGTCCGGT 58.737 41.667 0.00 0.00 0.00 5.28
463 464 5.125739 AGAGAGTAGTTAAATCTGTCCGGTG 59.874 44.000 0.00 0.00 0.00 4.94
464 465 5.014858 AGAGTAGTTAAATCTGTCCGGTGA 58.985 41.667 0.00 0.00 0.00 4.02
465 466 5.657302 AGAGTAGTTAAATCTGTCCGGTGAT 59.343 40.000 0.00 1.17 0.00 3.06
466 467 5.661458 AGTAGTTAAATCTGTCCGGTGATG 58.339 41.667 0.00 0.00 0.00 3.07
467 468 4.819105 AGTTAAATCTGTCCGGTGATGA 57.181 40.909 0.00 0.00 0.00 2.92
468 469 5.160607 AGTTAAATCTGTCCGGTGATGAA 57.839 39.130 0.00 0.69 0.00 2.57
469 470 4.935808 AGTTAAATCTGTCCGGTGATGAAC 59.064 41.667 0.00 11.53 0.00 3.18
470 471 3.703001 AAATCTGTCCGGTGATGAACT 57.297 42.857 0.00 0.00 0.00 3.01
471 472 4.819105 AAATCTGTCCGGTGATGAACTA 57.181 40.909 0.00 0.00 0.00 2.24
472 473 4.392921 AATCTGTCCGGTGATGAACTAG 57.607 45.455 0.00 0.00 0.00 2.57
473 474 1.476891 TCTGTCCGGTGATGAACTAGC 59.523 52.381 0.00 0.00 0.00 3.42
474 475 1.478510 CTGTCCGGTGATGAACTAGCT 59.521 52.381 0.00 0.00 0.00 3.32
475 476 1.476891 TGTCCGGTGATGAACTAGCTC 59.523 52.381 0.00 0.00 0.00 4.09
476 477 1.751924 GTCCGGTGATGAACTAGCTCT 59.248 52.381 0.00 0.00 0.00 4.09
477 478 2.166664 GTCCGGTGATGAACTAGCTCTT 59.833 50.000 0.00 0.00 0.00 2.85
478 479 2.832129 TCCGGTGATGAACTAGCTCTTT 59.168 45.455 0.00 0.00 0.00 2.52
479 480 3.260884 TCCGGTGATGAACTAGCTCTTTT 59.739 43.478 0.00 0.00 0.00 2.27
480 481 3.619038 CCGGTGATGAACTAGCTCTTTTC 59.381 47.826 0.00 0.00 0.00 2.29
481 482 3.304559 CGGTGATGAACTAGCTCTTTTCG 59.695 47.826 0.00 0.00 0.00 3.46
482 483 3.619038 GGTGATGAACTAGCTCTTTTCGG 59.381 47.826 0.00 0.00 0.00 4.30
483 484 4.246458 GTGATGAACTAGCTCTTTTCGGT 58.754 43.478 0.00 0.00 0.00 4.69
484 485 4.327627 GTGATGAACTAGCTCTTTTCGGTC 59.672 45.833 0.00 0.00 0.00 4.79
485 486 2.942710 TGAACTAGCTCTTTTCGGTCG 58.057 47.619 0.00 0.00 0.00 4.79
486 487 2.295349 TGAACTAGCTCTTTTCGGTCGT 59.705 45.455 0.00 0.00 0.00 4.34
487 488 2.633199 ACTAGCTCTTTTCGGTCGTC 57.367 50.000 0.00 0.00 0.00 4.20
488 489 1.201880 ACTAGCTCTTTTCGGTCGTCC 59.798 52.381 0.00 0.00 0.00 4.79
498 499 4.942090 GGTCGTCCGACGTACAAA 57.058 55.556 19.89 0.00 45.41 2.83
499 500 3.177883 GGTCGTCCGACGTACAAAA 57.822 52.632 19.89 0.00 45.41 2.44
500 501 1.486439 GGTCGTCCGACGTACAAAAA 58.514 50.000 19.89 0.00 45.41 1.94
501 502 2.061028 GGTCGTCCGACGTACAAAAAT 58.939 47.619 19.89 0.00 45.41 1.82
502 503 2.476241 GGTCGTCCGACGTACAAAAATT 59.524 45.455 19.89 0.00 45.41 1.82
503 504 3.059665 GGTCGTCCGACGTACAAAAATTT 60.060 43.478 19.89 0.00 45.41 1.82
504 505 4.149747 GGTCGTCCGACGTACAAAAATTTA 59.850 41.667 19.89 0.00 45.41 1.40
505 506 5.300393 GTCGTCCGACGTACAAAAATTTAG 58.700 41.667 19.89 0.00 43.14 1.85
506 507 4.385447 TCGTCCGACGTACAAAAATTTAGG 59.615 41.667 19.89 0.00 43.14 2.69
507 508 4.150451 CGTCCGACGTACAAAAATTTAGGT 59.850 41.667 12.91 0.00 36.74 3.08
508 509 5.376537 GTCCGACGTACAAAAATTTAGGTG 58.623 41.667 0.00 0.00 0.00 4.00
509 510 5.050159 GTCCGACGTACAAAAATTTAGGTGT 60.050 40.000 0.00 0.00 0.00 4.16
510 511 6.145371 GTCCGACGTACAAAAATTTAGGTGTA 59.855 38.462 0.00 0.00 0.00 2.90
511 512 6.365789 TCCGACGTACAAAAATTTAGGTGTAG 59.634 38.462 8.70 6.86 0.00 2.74
512 513 6.365789 CCGACGTACAAAAATTTAGGTGTAGA 59.634 38.462 8.70 0.00 0.00 2.59
513 514 7.063780 CCGACGTACAAAAATTTAGGTGTAGAT 59.936 37.037 8.70 2.74 0.00 1.98
514 515 7.896274 CGACGTACAAAAATTTAGGTGTAGATG 59.104 37.037 8.70 6.05 0.00 2.90
515 516 7.524065 ACGTACAAAAATTTAGGTGTAGATGC 58.476 34.615 8.70 0.00 0.00 3.91
516 517 7.389607 ACGTACAAAAATTTAGGTGTAGATGCT 59.610 33.333 8.70 0.00 0.00 3.79
517 518 7.903431 CGTACAAAAATTTAGGTGTAGATGCTC 59.097 37.037 8.70 0.00 0.00 4.26
518 519 6.842163 ACAAAAATTTAGGTGTAGATGCTCG 58.158 36.000 0.00 0.00 0.00 5.03
519 520 6.430000 ACAAAAATTTAGGTGTAGATGCTCGT 59.570 34.615 0.00 0.00 0.00 4.18
520 521 7.604927 ACAAAAATTTAGGTGTAGATGCTCGTA 59.395 33.333 0.00 0.00 0.00 3.43
521 522 8.447833 CAAAAATTTAGGTGTAGATGCTCGTAA 58.552 33.333 0.00 0.00 0.00 3.18
522 523 7.535489 AAATTTAGGTGTAGATGCTCGTAAC 57.465 36.000 0.00 0.00 0.00 2.50
523 524 4.644103 TTAGGTGTAGATGCTCGTAACC 57.356 45.455 0.00 0.00 0.00 2.85
524 525 2.453521 AGGTGTAGATGCTCGTAACCA 58.546 47.619 0.00 0.00 0.00 3.67
525 526 2.829720 AGGTGTAGATGCTCGTAACCAA 59.170 45.455 0.00 0.00 0.00 3.67
526 527 3.451178 AGGTGTAGATGCTCGTAACCAAT 59.549 43.478 0.00 0.00 0.00 3.16
527 528 4.647853 AGGTGTAGATGCTCGTAACCAATA 59.352 41.667 0.00 0.00 0.00 1.90
528 529 5.128171 AGGTGTAGATGCTCGTAACCAATAA 59.872 40.000 0.00 0.00 0.00 1.40
529 530 5.813672 GGTGTAGATGCTCGTAACCAATAAA 59.186 40.000 0.00 0.00 0.00 1.40
530 531 6.314400 GGTGTAGATGCTCGTAACCAATAAAA 59.686 38.462 0.00 0.00 0.00 1.52
531 532 7.178074 GTGTAGATGCTCGTAACCAATAAAAC 58.822 38.462 0.00 0.00 0.00 2.43
532 533 5.813080 AGATGCTCGTAACCAATAAAACC 57.187 39.130 0.00 0.00 0.00 3.27
533 534 4.638865 AGATGCTCGTAACCAATAAAACCC 59.361 41.667 0.00 0.00 0.00 4.11
534 535 3.083293 TGCTCGTAACCAATAAAACCCC 58.917 45.455 0.00 0.00 0.00 4.95
535 536 3.083293 GCTCGTAACCAATAAAACCCCA 58.917 45.455 0.00 0.00 0.00 4.96
536 537 3.128068 GCTCGTAACCAATAAAACCCCAG 59.872 47.826 0.00 0.00 0.00 4.45
537 538 4.581868 CTCGTAACCAATAAAACCCCAGA 58.418 43.478 0.00 0.00 0.00 3.86
538 539 4.983053 TCGTAACCAATAAAACCCCAGAA 58.017 39.130 0.00 0.00 0.00 3.02
539 540 5.005094 TCGTAACCAATAAAACCCCAGAAG 58.995 41.667 0.00 0.00 0.00 2.85
540 541 4.157105 CGTAACCAATAAAACCCCAGAAGG 59.843 45.833 0.00 0.00 0.00 3.46
541 542 2.536066 ACCAATAAAACCCCAGAAGGC 58.464 47.619 0.00 0.00 0.00 4.35
542 543 2.158234 ACCAATAAAACCCCAGAAGGCA 60.158 45.455 0.00 0.00 0.00 4.75
543 544 3.106827 CCAATAAAACCCCAGAAGGCAT 58.893 45.455 0.00 0.00 0.00 4.40
544 545 3.519107 CCAATAAAACCCCAGAAGGCATT 59.481 43.478 0.00 0.00 0.00 3.56
545 546 4.383010 CCAATAAAACCCCAGAAGGCATTC 60.383 45.833 2.10 2.10 35.52 2.67
546 547 1.644509 AAAACCCCAGAAGGCATTCC 58.355 50.000 7.63 0.00 35.94 3.01
547 548 0.252239 AAACCCCAGAAGGCATTCCC 60.252 55.000 7.63 0.00 35.94 3.97
548 549 2.124151 CCCCAGAAGGCATTCCCG 60.124 66.667 7.63 0.00 39.21 5.14
549 550 2.677228 CCCAGAAGGCATTCCCGT 59.323 61.111 7.63 0.00 39.21 5.28
550 551 1.632018 CCCCAGAAGGCATTCCCGTA 61.632 60.000 7.63 0.00 39.21 4.02
551 552 0.254747 CCCAGAAGGCATTCCCGTAA 59.745 55.000 7.63 0.00 39.21 3.18
552 553 1.668419 CCAGAAGGCATTCCCGTAAG 58.332 55.000 7.63 0.00 39.21 2.34
573 574 9.314321 CGTAAGGAAGAATATTTTTAGCAGAGA 57.686 33.333 0.00 0.00 0.00 3.10
602 603 8.837099 ACATATGAATAAAAGGACATTTGGGA 57.163 30.769 10.38 0.00 0.00 4.37
603 604 9.438163 ACATATGAATAAAAGGACATTTGGGAT 57.562 29.630 10.38 0.00 0.00 3.85
607 608 8.893563 TGAATAAAAGGACATTTGGGATTACT 57.106 30.769 0.00 0.00 0.00 2.24
608 609 9.983024 TGAATAAAAGGACATTTGGGATTACTA 57.017 29.630 0.00 0.00 0.00 1.82
732 734 2.823593 AACACGCACAGCACTGCA 60.824 55.556 3.30 0.00 36.94 4.41
753 756 4.574828 GCACTACACACTTCCAAAGAGAAA 59.425 41.667 0.00 0.00 0.00 2.52
754 757 5.065988 GCACTACACACTTCCAAAGAGAAAA 59.934 40.000 0.00 0.00 0.00 2.29
755 758 6.719365 CACTACACACTTCCAAAGAGAAAAG 58.281 40.000 0.00 0.00 0.00 2.27
762 765 6.071391 ACACTTCCAAAGAGAAAAGAAAAGCA 60.071 34.615 0.00 0.00 0.00 3.91
770 775 2.965831 AGAAAAGAAAAGCACCCTTCCC 59.034 45.455 0.00 0.00 0.00 3.97
790 795 2.576191 CCTCCATGGTAGACTTTGGGAA 59.424 50.000 12.58 0.00 0.00 3.97
795 800 2.414612 TGGTAGACTTTGGGAACTGGT 58.585 47.619 0.00 0.00 0.00 4.00
796 801 2.105821 TGGTAGACTTTGGGAACTGGTG 59.894 50.000 0.00 0.00 0.00 4.17
797 802 2.105993 GGTAGACTTTGGGAACTGGTGT 59.894 50.000 0.00 0.00 0.00 4.16
798 803 3.325716 GGTAGACTTTGGGAACTGGTGTA 59.674 47.826 0.00 0.00 0.00 2.90
803 808 3.325716 ACTTTGGGAACTGGTGTACGTAT 59.674 43.478 0.00 0.00 0.00 3.06
816 821 2.388494 TACGTATGCAGCCGCGAGAG 62.388 60.000 8.23 0.00 42.97 3.20
828 833 2.879233 GCGAGAGTCCAACCCACCA 61.879 63.158 0.00 0.00 0.00 4.17
862 867 3.945285 ACTCCCACGCCATTAATAAACTG 59.055 43.478 0.00 0.00 0.00 3.16
948 953 2.284699 CCTTCCTCCCGTGTCCCT 60.285 66.667 0.00 0.00 0.00 4.20
967 972 1.144936 CTTCACTCCTCGGCCATCC 59.855 63.158 2.24 0.00 0.00 3.51
1943 1981 0.094216 CTCAACATCACGCGCTTCAG 59.906 55.000 5.73 0.00 0.00 3.02
1989 2027 2.046892 GTGCAGGCGTCCATCACT 60.047 61.111 0.00 0.00 0.00 3.41
2295 2344 1.212935 GGTGGTACCTTGCATCCTCAT 59.787 52.381 14.36 0.00 34.73 2.90
2410 2471 4.227197 AGAGGCCATTGTAGCAGTAGTAT 58.773 43.478 5.01 0.00 0.00 2.12
2438 2499 9.143631 CATTATTTTTGGTTTCTTCACCTGATC 57.856 33.333 0.00 0.00 37.75 2.92
2539 2632 8.757877 CAATTTCCAAATGGGGTAGAGAATTAA 58.242 33.333 0.00 0.00 37.22 1.40
2614 2711 2.541466 CCTGGGTATGAGGGGATAGAC 58.459 57.143 0.00 0.00 0.00 2.59
2697 2800 2.617308 CTGCATTAGATTCTGCTGGTGG 59.383 50.000 0.00 0.00 39.16 4.61
2795 2898 2.205074 CACACCGATCTTGACTATGGC 58.795 52.381 0.00 0.00 0.00 4.40
2831 2934 4.788100 CGAAAGTCTGACAGTGTGTTTTTG 59.212 41.667 10.88 0.58 0.00 2.44
2854 3138 2.814336 GGCACTTTGTCTAAGGTTCAGG 59.186 50.000 0.00 0.00 38.23 3.86
2855 3139 3.477530 GCACTTTGTCTAAGGTTCAGGT 58.522 45.455 0.00 0.00 38.23 4.00
2856 3140 3.883489 GCACTTTGTCTAAGGTTCAGGTT 59.117 43.478 0.00 0.00 38.23 3.50
2913 3197 6.054860 TGCTAAGAGAAGAAACCTAGCAAT 57.945 37.500 0.00 0.00 36.53 3.56
2926 3210 8.730680 AGAAACCTAGCAATTTTATACAGTGTG 58.269 33.333 5.88 0.00 0.00 3.82
2946 4113 9.651718 CAGTGTGTTCTGATAAGAAACTAAAAC 57.348 33.333 0.00 0.00 37.61 2.43
2951 4118 9.216117 TGTTCTGATAAGAAACTAAAACCTAGC 57.784 33.333 0.00 0.00 0.00 3.42
2954 4121 8.372459 TCTGATAAGAAACTAAAACCTAGCACA 58.628 33.333 0.00 0.00 0.00 4.57
2955 4122 8.319143 TGATAAGAAACTAAAACCTAGCACAC 57.681 34.615 0.00 0.00 0.00 3.82
2956 4123 8.154856 TGATAAGAAACTAAAACCTAGCACACT 58.845 33.333 0.00 0.00 0.00 3.55
2964 4131 4.853924 AAACCTAGCACACTCATTTTGG 57.146 40.909 0.00 0.00 0.00 3.28
2966 4133 4.098914 ACCTAGCACACTCATTTTGGAA 57.901 40.909 0.00 0.00 0.00 3.53
2971 4654 8.052748 ACCTAGCACACTCATTTTGGAAATATA 58.947 33.333 0.00 0.00 0.00 0.86
2972 4655 8.562892 CCTAGCACACTCATTTTGGAAATATAG 58.437 37.037 0.00 0.00 0.00 1.31
2983 4666 9.778993 CATTTTGGAAATATAGACACTTGACAG 57.221 33.333 0.00 0.00 0.00 3.51
2984 4667 9.739276 ATTTTGGAAATATAGACACTTGACAGA 57.261 29.630 0.00 0.00 0.00 3.41
2989 4672 8.607459 GGAAATATAGACACTTGACAGAACATG 58.393 37.037 0.00 0.00 0.00 3.21
3048 4841 2.039216 TCCGGCTGTTCCTAACATTCAA 59.961 45.455 0.00 0.00 41.26 2.69
3135 4928 0.967380 GTCCAATGAAGGTGGCCCAG 60.967 60.000 0.00 0.00 35.99 4.45
3222 5028 9.949174 GTTTCAAAAGGAACATGCAATTATTTT 57.051 25.926 0.00 0.00 34.56 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.337689 CCTTGATTTGTAGATTGTGGAGATTCA 59.662 37.037 0.00 0.00 0.00 2.57
1 2 7.337942 ACCTTGATTTGTAGATTGTGGAGATTC 59.662 37.037 0.00 0.00 0.00 2.52
2 3 7.177878 ACCTTGATTTGTAGATTGTGGAGATT 58.822 34.615 0.00 0.00 0.00 2.40
3 4 6.725364 ACCTTGATTTGTAGATTGTGGAGAT 58.275 36.000 0.00 0.00 0.00 2.75
4 5 6.126863 ACCTTGATTTGTAGATTGTGGAGA 57.873 37.500 0.00 0.00 0.00 3.71
5 6 7.921786 TTACCTTGATTTGTAGATTGTGGAG 57.078 36.000 0.00 0.00 0.00 3.86
6 7 8.328758 AGATTACCTTGATTTGTAGATTGTGGA 58.671 33.333 0.00 0.00 0.00 4.02
7 8 8.511604 AGATTACCTTGATTTGTAGATTGTGG 57.488 34.615 0.00 0.00 0.00 4.17
8 9 9.994432 GAAGATTACCTTGATTTGTAGATTGTG 57.006 33.333 0.00 0.00 34.68 3.33
9 10 9.965902 AGAAGATTACCTTGATTTGTAGATTGT 57.034 29.630 0.00 0.00 34.68 2.71
15 16 9.793259 AGTTCAAGAAGATTACCTTGATTTGTA 57.207 29.630 0.00 0.00 45.43 2.41
16 17 8.571336 CAGTTCAAGAAGATTACCTTGATTTGT 58.429 33.333 0.00 0.00 45.43 2.83
17 18 7.540055 GCAGTTCAAGAAGATTACCTTGATTTG 59.460 37.037 0.00 0.00 45.43 2.32
18 19 7.449704 AGCAGTTCAAGAAGATTACCTTGATTT 59.550 33.333 0.00 0.00 45.43 2.17
19 20 6.944862 AGCAGTTCAAGAAGATTACCTTGATT 59.055 34.615 0.00 0.00 45.43 2.57
20 21 6.373774 CAGCAGTTCAAGAAGATTACCTTGAT 59.626 38.462 0.00 0.00 45.43 2.57
21 22 5.702670 CAGCAGTTCAAGAAGATTACCTTGA 59.297 40.000 0.00 0.00 44.75 3.02
22 23 5.702670 TCAGCAGTTCAAGAAGATTACCTTG 59.297 40.000 0.00 0.00 40.68 3.61
23 24 5.869579 TCAGCAGTTCAAGAAGATTACCTT 58.130 37.500 0.00 0.00 37.93 3.50
24 25 5.489792 TCAGCAGTTCAAGAAGATTACCT 57.510 39.130 0.00 0.00 0.00 3.08
25 26 5.391416 GCTTCAGCAGTTCAAGAAGATTACC 60.391 44.000 0.00 0.00 39.78 2.85
26 27 5.411053 AGCTTCAGCAGTTCAAGAAGATTAC 59.589 40.000 0.75 0.00 45.16 1.89
27 28 5.410746 CAGCTTCAGCAGTTCAAGAAGATTA 59.589 40.000 0.75 0.00 45.16 1.75
28 29 4.215827 CAGCTTCAGCAGTTCAAGAAGATT 59.784 41.667 0.75 0.00 45.16 2.40
29 30 3.752222 CAGCTTCAGCAGTTCAAGAAGAT 59.248 43.478 0.75 0.00 45.16 2.40
30 31 3.136763 CAGCTTCAGCAGTTCAAGAAGA 58.863 45.455 0.75 0.00 45.16 2.87
31 32 2.877168 ACAGCTTCAGCAGTTCAAGAAG 59.123 45.455 0.75 0.00 45.16 2.85
32 33 2.923121 ACAGCTTCAGCAGTTCAAGAA 58.077 42.857 0.75 0.00 45.16 2.52
33 34 2.615447 CAACAGCTTCAGCAGTTCAAGA 59.385 45.455 6.61 0.00 45.62 3.02
34 35 2.287427 CCAACAGCTTCAGCAGTTCAAG 60.287 50.000 6.61 0.00 45.62 3.02
35 36 1.677576 CCAACAGCTTCAGCAGTTCAA 59.322 47.619 6.61 0.00 45.62 2.69
36 37 1.311859 CCAACAGCTTCAGCAGTTCA 58.688 50.000 6.61 0.00 45.62 3.18
37 38 0.039708 GCCAACAGCTTCAGCAGTTC 60.040 55.000 6.61 0.00 45.62 3.01
39 40 3.755434 GCCAACAGCTTCAGCAGT 58.245 55.556 0.75 0.00 45.16 4.40
48 49 6.551736 TCGAGAAAATAAATAAGCCAACAGC 58.448 36.000 0.00 0.00 44.25 4.40
49 50 7.484959 GGTTCGAGAAAATAAATAAGCCAACAG 59.515 37.037 0.00 0.00 0.00 3.16
50 51 7.040340 TGGTTCGAGAAAATAAATAAGCCAACA 60.040 33.333 0.00 0.00 0.00 3.33
51 52 7.309920 TGGTTCGAGAAAATAAATAAGCCAAC 58.690 34.615 0.00 0.00 0.00 3.77
52 53 7.455641 TGGTTCGAGAAAATAAATAAGCCAA 57.544 32.000 0.00 0.00 0.00 4.52
53 54 7.639113 ATGGTTCGAGAAAATAAATAAGCCA 57.361 32.000 0.00 0.00 0.00 4.75
54 55 8.188139 TCAATGGTTCGAGAAAATAAATAAGCC 58.812 33.333 0.00 0.00 0.00 4.35
55 56 9.567848 TTCAATGGTTCGAGAAAATAAATAAGC 57.432 29.630 0.00 0.00 0.00 3.09
59 60 9.410556 CAACTTCAATGGTTCGAGAAAATAAAT 57.589 29.630 0.00 0.00 0.00 1.40
60 61 8.410141 ACAACTTCAATGGTTCGAGAAAATAAA 58.590 29.630 0.00 0.00 0.00 1.40
61 62 7.936584 ACAACTTCAATGGTTCGAGAAAATAA 58.063 30.769 0.00 0.00 0.00 1.40
62 63 7.504924 ACAACTTCAATGGTTCGAGAAAATA 57.495 32.000 0.00 0.00 0.00 1.40
63 64 6.391227 ACAACTTCAATGGTTCGAGAAAAT 57.609 33.333 0.00 0.00 0.00 1.82
64 65 5.828299 ACAACTTCAATGGTTCGAGAAAA 57.172 34.783 0.00 0.00 0.00 2.29
65 66 5.577835 CAACAACTTCAATGGTTCGAGAAA 58.422 37.500 0.00 0.00 0.00 2.52
66 67 4.497340 GCAACAACTTCAATGGTTCGAGAA 60.497 41.667 0.00 0.00 0.00 2.87
67 68 3.003275 GCAACAACTTCAATGGTTCGAGA 59.997 43.478 0.00 0.00 0.00 4.04
68 69 3.300009 GCAACAACTTCAATGGTTCGAG 58.700 45.455 0.00 0.00 0.00 4.04
69 70 2.034053 GGCAACAACTTCAATGGTTCGA 59.966 45.455 0.00 0.00 0.00 3.71
70 71 2.034558 AGGCAACAACTTCAATGGTTCG 59.965 45.455 0.00 0.00 41.41 3.95
71 72 3.733443 AGGCAACAACTTCAATGGTTC 57.267 42.857 0.00 0.00 41.41 3.62
72 73 5.806654 ATAAGGCAACAACTTCAATGGTT 57.193 34.783 0.00 0.00 41.41 3.67
73 74 5.806654 AATAAGGCAACAACTTCAATGGT 57.193 34.783 0.00 0.00 41.41 3.55
74 75 7.649306 GCTATAATAAGGCAACAACTTCAATGG 59.351 37.037 0.00 0.00 41.41 3.16
75 76 8.190122 TGCTATAATAAGGCAACAACTTCAATG 58.810 33.333 0.00 0.00 41.41 2.82
76 77 8.292444 TGCTATAATAAGGCAACAACTTCAAT 57.708 30.769 0.00 0.00 41.41 2.57
77 78 7.695480 TGCTATAATAAGGCAACAACTTCAA 57.305 32.000 0.00 0.00 41.41 2.69
78 79 7.695480 TTGCTATAATAAGGCAACAACTTCA 57.305 32.000 0.00 0.00 40.38 3.02
96 97 9.903682 GCATAGACAACATCATTTATTTGCTAT 57.096 29.630 0.00 0.00 0.00 2.97
97 98 8.069574 CGCATAGACAACATCATTTATTTGCTA 58.930 33.333 0.00 0.00 0.00 3.49
98 99 6.914215 CGCATAGACAACATCATTTATTTGCT 59.086 34.615 0.00 0.00 0.00 3.91
99 100 6.912051 TCGCATAGACAACATCATTTATTTGC 59.088 34.615 0.00 0.00 0.00 3.68
100 101 8.736742 GTTCGCATAGACAACATCATTTATTTG 58.263 33.333 0.00 0.00 0.00 2.32
101 102 8.677300 AGTTCGCATAGACAACATCATTTATTT 58.323 29.630 0.00 0.00 0.00 1.40
102 103 8.213518 AGTTCGCATAGACAACATCATTTATT 57.786 30.769 0.00 0.00 0.00 1.40
103 104 7.792374 AGTTCGCATAGACAACATCATTTAT 57.208 32.000 0.00 0.00 0.00 1.40
104 105 8.887036 ATAGTTCGCATAGACAACATCATTTA 57.113 30.769 0.00 0.00 0.00 1.40
105 106 7.792374 ATAGTTCGCATAGACAACATCATTT 57.208 32.000 0.00 0.00 0.00 2.32
106 107 7.385205 GGTATAGTTCGCATAGACAACATCATT 59.615 37.037 0.00 0.00 0.00 2.57
107 108 6.868864 GGTATAGTTCGCATAGACAACATCAT 59.131 38.462 0.00 0.00 0.00 2.45
108 109 6.040504 AGGTATAGTTCGCATAGACAACATCA 59.959 38.462 0.00 0.00 0.00 3.07
109 110 6.448006 AGGTATAGTTCGCATAGACAACATC 58.552 40.000 0.00 0.00 0.00 3.06
110 111 6.406692 AGGTATAGTTCGCATAGACAACAT 57.593 37.500 0.00 0.00 0.00 2.71
111 112 5.847111 AGGTATAGTTCGCATAGACAACA 57.153 39.130 0.00 0.00 0.00 3.33
112 113 6.732154 TGTAGGTATAGTTCGCATAGACAAC 58.268 40.000 0.00 0.00 0.00 3.32
113 114 6.947644 TGTAGGTATAGTTCGCATAGACAA 57.052 37.500 0.00 0.00 0.00 3.18
114 115 8.803397 ATATGTAGGTATAGTTCGCATAGACA 57.197 34.615 0.00 0.00 0.00 3.41
115 116 8.063038 CGATATGTAGGTATAGTTCGCATAGAC 58.937 40.741 0.00 0.00 0.00 2.59
116 117 7.767659 ACGATATGTAGGTATAGTTCGCATAGA 59.232 37.037 0.00 0.00 0.00 1.98
117 118 7.851472 CACGATATGTAGGTATAGTTCGCATAG 59.149 40.741 0.00 0.00 0.00 2.23
118 119 7.677982 GCACGATATGTAGGTATAGTTCGCATA 60.678 40.741 0.00 0.00 0.00 3.14
119 120 6.552629 CACGATATGTAGGTATAGTTCGCAT 58.447 40.000 0.00 0.00 0.00 4.73
120 121 5.618418 GCACGATATGTAGGTATAGTTCGCA 60.618 44.000 0.00 0.00 0.00 5.10
121 122 4.792189 GCACGATATGTAGGTATAGTTCGC 59.208 45.833 0.00 0.00 0.00 4.70
122 123 5.934921 TGCACGATATGTAGGTATAGTTCG 58.065 41.667 0.00 0.00 0.00 3.95
123 124 8.583810 TTTTGCACGATATGTAGGTATAGTTC 57.416 34.615 0.00 0.00 0.00 3.01
124 125 8.951787 TTTTTGCACGATATGTAGGTATAGTT 57.048 30.769 0.00 0.00 0.00 2.24
125 126 8.418662 TCTTTTTGCACGATATGTAGGTATAGT 58.581 33.333 0.00 0.00 0.00 2.12
126 127 8.812147 TCTTTTTGCACGATATGTAGGTATAG 57.188 34.615 0.00 0.00 0.00 1.31
127 128 9.602568 TTTCTTTTTGCACGATATGTAGGTATA 57.397 29.630 0.00 0.00 0.00 1.47
128 129 8.500753 TTTCTTTTTGCACGATATGTAGGTAT 57.499 30.769 0.00 0.00 0.00 2.73
129 130 7.908827 TTTCTTTTTGCACGATATGTAGGTA 57.091 32.000 0.00 0.00 0.00 3.08
130 131 6.811253 TTTCTTTTTGCACGATATGTAGGT 57.189 33.333 0.00 0.00 0.00 3.08
131 132 8.184192 AGAATTTCTTTTTGCACGATATGTAGG 58.816 33.333 0.00 0.00 0.00 3.18
132 133 9.559958 AAGAATTTCTTTTTGCACGATATGTAG 57.440 29.630 5.82 0.00 31.57 2.74
134 135 9.906660 TTAAGAATTTCTTTTTGCACGATATGT 57.093 25.926 16.39 0.00 37.89 2.29
137 138 9.959749 AACTTAAGAATTTCTTTTTGCACGATA 57.040 25.926 16.39 0.00 37.89 2.92
138 139 8.871686 AACTTAAGAATTTCTTTTTGCACGAT 57.128 26.923 16.39 0.00 37.89 3.73
139 140 8.696410 AAACTTAAGAATTTCTTTTTGCACGA 57.304 26.923 16.39 0.00 37.89 4.35
140 141 8.807581 AGAAACTTAAGAATTTCTTTTTGCACG 58.192 29.630 16.39 0.00 41.34 5.34
160 161 9.770503 GTTTCTAAACTTTTCGAGAAAGAAACT 57.229 29.630 23.30 11.15 41.69 2.66
161 162 8.722368 CGTTTCTAAACTTTTCGAGAAAGAAAC 58.278 33.333 21.95 21.95 41.63 2.78
162 163 8.658609 TCGTTTCTAAACTTTTCGAGAAAGAAA 58.341 29.630 19.90 14.43 38.30 2.52
163 164 8.188531 TCGTTTCTAAACTTTTCGAGAAAGAA 57.811 30.769 19.90 10.35 38.30 2.52
164 165 7.760131 TCGTTTCTAAACTTTTCGAGAAAGA 57.240 32.000 19.90 5.67 38.30 2.52
165 166 8.989160 ATTCGTTTCTAAACTTTTCGAGAAAG 57.011 30.769 14.52 14.52 38.30 2.62
168 169 9.467258 TCTAATTCGTTTCTAAACTTTTCGAGA 57.533 29.630 4.24 0.00 36.77 4.04
169 170 9.728774 CTCTAATTCGTTTCTAAACTTTTCGAG 57.271 33.333 4.24 3.09 36.77 4.04
170 171 9.467258 TCTCTAATTCGTTTCTAAACTTTTCGA 57.533 29.630 4.24 0.00 36.77 3.71
176 177 9.760077 TGTTCTTCTCTAATTCGTTTCTAAACT 57.240 29.630 4.24 0.00 36.77 2.66
211 212 9.524496 TCCGTCTACCATATACATAACACTATT 57.476 33.333 0.00 0.00 0.00 1.73
212 213 9.524496 TTCCGTCTACCATATACATAACACTAT 57.476 33.333 0.00 0.00 0.00 2.12
213 214 8.786898 GTTCCGTCTACCATATACATAACACTA 58.213 37.037 0.00 0.00 0.00 2.74
214 215 7.504911 AGTTCCGTCTACCATATACATAACACT 59.495 37.037 0.00 0.00 0.00 3.55
215 216 7.655490 AGTTCCGTCTACCATATACATAACAC 58.345 38.462 0.00 0.00 0.00 3.32
216 217 7.828508 AGTTCCGTCTACCATATACATAACA 57.171 36.000 0.00 0.00 0.00 2.41
217 218 8.355169 TGAAGTTCCGTCTACCATATACATAAC 58.645 37.037 0.00 0.00 0.00 1.89
218 219 8.467963 TGAAGTTCCGTCTACCATATACATAA 57.532 34.615 0.00 0.00 0.00 1.90
219 220 7.940688 TCTGAAGTTCCGTCTACCATATACATA 59.059 37.037 0.00 0.00 0.00 2.29
220 221 6.776116 TCTGAAGTTCCGTCTACCATATACAT 59.224 38.462 0.00 0.00 0.00 2.29
221 222 6.124340 TCTGAAGTTCCGTCTACCATATACA 58.876 40.000 0.00 0.00 0.00 2.29
222 223 6.630444 TCTGAAGTTCCGTCTACCATATAC 57.370 41.667 0.00 0.00 0.00 1.47
223 224 7.002276 TCATCTGAAGTTCCGTCTACCATATA 58.998 38.462 0.00 0.00 0.00 0.86
224 225 5.833667 TCATCTGAAGTTCCGTCTACCATAT 59.166 40.000 0.00 0.00 0.00 1.78
225 226 5.198207 TCATCTGAAGTTCCGTCTACCATA 58.802 41.667 0.00 0.00 0.00 2.74
226 227 4.023980 TCATCTGAAGTTCCGTCTACCAT 58.976 43.478 0.00 0.00 0.00 3.55
227 228 3.427573 TCATCTGAAGTTCCGTCTACCA 58.572 45.455 0.00 0.00 0.00 3.25
228 229 4.451629 TTCATCTGAAGTTCCGTCTACC 57.548 45.455 0.00 0.00 0.00 3.18
229 230 7.033791 TGTAATTCATCTGAAGTTCCGTCTAC 58.966 38.462 0.00 0.00 37.48 2.59
230 231 7.165460 TGTAATTCATCTGAAGTTCCGTCTA 57.835 36.000 0.00 0.00 37.48 2.59
231 232 6.037786 TGTAATTCATCTGAAGTTCCGTCT 57.962 37.500 0.00 0.00 37.48 4.18
232 233 6.721571 TTGTAATTCATCTGAAGTTCCGTC 57.278 37.500 0.00 0.00 37.48 4.79
233 234 6.878923 TCATTGTAATTCATCTGAAGTTCCGT 59.121 34.615 0.00 0.00 37.48 4.69
234 235 7.307493 TCATTGTAATTCATCTGAAGTTCCG 57.693 36.000 0.00 0.00 37.48 4.30
256 257 9.405587 CGAAAAGCTAAAACCATTTCTTATTCA 57.594 29.630 0.00 0.00 0.00 2.57
257 258 8.373256 GCGAAAAGCTAAAACCATTTCTTATTC 58.627 33.333 0.00 0.00 44.04 1.75
258 259 8.239681 GCGAAAAGCTAAAACCATTTCTTATT 57.760 30.769 0.00 0.00 44.04 1.40
259 260 7.812309 GCGAAAAGCTAAAACCATTTCTTAT 57.188 32.000 0.00 0.00 44.04 1.73
276 277 1.982073 GACATGAGGGCGGCGAAAAG 61.982 60.000 12.98 0.00 0.00 2.27
277 278 2.033448 ACATGAGGGCGGCGAAAA 59.967 55.556 12.98 0.00 0.00 2.29
278 279 2.435938 GACATGAGGGCGGCGAAA 60.436 61.111 12.98 0.00 0.00 3.46
279 280 4.467084 GGACATGAGGGCGGCGAA 62.467 66.667 12.98 0.00 0.00 4.70
281 282 4.776322 TTGGACATGAGGGCGGCG 62.776 66.667 0.51 0.51 0.00 6.46
282 283 1.728490 GATTTGGACATGAGGGCGGC 61.728 60.000 0.00 0.00 0.00 6.53
283 284 1.103398 GGATTTGGACATGAGGGCGG 61.103 60.000 0.00 0.00 0.00 6.13
284 285 0.107017 AGGATTTGGACATGAGGGCG 60.107 55.000 0.00 0.00 0.00 6.13
285 286 1.396653 CAGGATTTGGACATGAGGGC 58.603 55.000 0.00 0.00 0.00 5.19
308 309 8.022210 GAGTATATACTACCTTCCAAGGGCGG 62.022 50.000 15.42 2.36 42.85 6.13
309 310 5.105837 GAGTATATACTACCTTCCAAGGGCG 60.106 48.000 15.42 2.93 42.85 6.13
310 311 5.187381 GGAGTATATACTACCTTCCAAGGGC 59.813 48.000 15.42 0.00 42.85 5.19
311 312 6.854091 GGAGTATATACTACCTTCCAAGGG 57.146 45.833 15.42 0.00 42.85 3.95
321 322 7.516198 TTTCAACGGAGGGAGTATATACTAC 57.484 40.000 15.84 15.84 36.50 2.73
322 323 8.537728 TTTTTCAACGGAGGGAGTATATACTA 57.462 34.615 15.42 0.00 36.50 1.82
323 324 7.427989 TTTTTCAACGGAGGGAGTATATACT 57.572 36.000 15.37 15.37 39.71 2.12
345 346 6.691508 AGAAACAAGCTTGAGACAAGTTTTT 58.308 32.000 32.50 17.86 0.00 1.94
346 347 6.071952 TGAGAAACAAGCTTGAGACAAGTTTT 60.072 34.615 32.50 18.54 0.00 2.43
347 348 5.415701 TGAGAAACAAGCTTGAGACAAGTTT 59.584 36.000 32.50 19.25 0.00 2.66
348 349 4.943705 TGAGAAACAAGCTTGAGACAAGTT 59.056 37.500 32.50 11.72 0.00 2.66
349 350 4.517285 TGAGAAACAAGCTTGAGACAAGT 58.483 39.130 32.50 5.49 0.00 3.16
350 351 5.490139 TTGAGAAACAAGCTTGAGACAAG 57.510 39.130 32.50 4.70 34.20 3.16
351 352 5.895636 TTTGAGAAACAAGCTTGAGACAA 57.104 34.783 32.50 23.06 39.77 3.18
352 353 5.221106 CCATTTGAGAAACAAGCTTGAGACA 60.221 40.000 32.50 19.34 39.77 3.41
353 354 5.009010 TCCATTTGAGAAACAAGCTTGAGAC 59.991 40.000 32.50 20.14 39.77 3.36
354 355 5.132502 TCCATTTGAGAAACAAGCTTGAGA 58.867 37.500 32.50 4.85 39.77 3.27
355 356 5.443185 TCCATTTGAGAAACAAGCTTGAG 57.557 39.130 32.50 7.94 39.77 3.02
356 357 5.302568 ACATCCATTTGAGAAACAAGCTTGA 59.697 36.000 32.50 8.10 39.77 3.02
357 358 5.535333 ACATCCATTTGAGAAACAAGCTTG 58.465 37.500 24.84 24.84 39.77 4.01
358 359 5.796424 ACATCCATTTGAGAAACAAGCTT 57.204 34.783 0.00 0.00 39.77 3.74
359 360 6.888632 AGATACATCCATTTGAGAAACAAGCT 59.111 34.615 0.00 0.00 39.77 3.74
360 361 7.093322 AGATACATCCATTTGAGAAACAAGC 57.907 36.000 0.00 0.00 39.77 4.01
361 362 8.341173 GCTAGATACATCCATTTGAGAAACAAG 58.659 37.037 0.00 0.00 39.77 3.16
362 363 7.828717 TGCTAGATACATCCATTTGAGAAACAA 59.171 33.333 0.00 0.00 36.65 2.83
363 364 7.280876 GTGCTAGATACATCCATTTGAGAAACA 59.719 37.037 0.00 0.00 0.00 2.83
364 365 7.497249 AGTGCTAGATACATCCATTTGAGAAAC 59.503 37.037 0.00 0.00 0.00 2.78
365 366 7.568349 AGTGCTAGATACATCCATTTGAGAAA 58.432 34.615 0.00 0.00 0.00 2.52
366 367 7.129457 AGTGCTAGATACATCCATTTGAGAA 57.871 36.000 0.00 0.00 0.00 2.87
367 368 6.737720 AGTGCTAGATACATCCATTTGAGA 57.262 37.500 0.00 0.00 0.00 3.27
368 369 8.147058 AGTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
369 370 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
370 371 8.668510 AAGTTAGTGCTAGATACATCCATTTG 57.331 34.615 0.00 0.00 0.00 2.32
371 372 9.113838 CAAAGTTAGTGCTAGATACATCCATTT 57.886 33.333 0.00 0.00 0.00 2.32
372 373 8.267894 ACAAAGTTAGTGCTAGATACATCCATT 58.732 33.333 0.00 0.00 0.00 3.16
373 374 7.712639 CACAAAGTTAGTGCTAGATACATCCAT 59.287 37.037 0.00 0.00 0.00 3.41
374 375 7.041721 CACAAAGTTAGTGCTAGATACATCCA 58.958 38.462 0.00 0.00 0.00 3.41
375 376 7.470289 CACAAAGTTAGTGCTAGATACATCC 57.530 40.000 0.00 0.00 0.00 3.51
387 388 8.479313 TGAATGTATCTAGCACAAAGTTAGTG 57.521 34.615 1.72 0.00 39.92 2.74
388 389 9.672673 AATGAATGTATCTAGCACAAAGTTAGT 57.327 29.630 1.72 0.00 33.25 2.24
391 392 9.013229 TCAAATGAATGTATCTAGCACAAAGTT 57.987 29.630 1.72 0.00 0.00 2.66
392 393 8.565896 TCAAATGAATGTATCTAGCACAAAGT 57.434 30.769 1.72 0.00 0.00 2.66
393 394 8.127327 CCTCAAATGAATGTATCTAGCACAAAG 58.873 37.037 1.72 0.00 0.00 2.77
394 395 7.067372 CCCTCAAATGAATGTATCTAGCACAAA 59.933 37.037 1.72 0.00 0.00 2.83
395 396 6.543465 CCCTCAAATGAATGTATCTAGCACAA 59.457 38.462 1.72 0.00 0.00 3.33
396 397 6.057533 CCCTCAAATGAATGTATCTAGCACA 58.942 40.000 0.22 0.22 0.00 4.57
397 398 6.203723 GTCCCTCAAATGAATGTATCTAGCAC 59.796 42.308 0.00 0.00 0.00 4.40
398 399 6.126796 TGTCCCTCAAATGAATGTATCTAGCA 60.127 38.462 0.00 0.00 0.00 3.49
399 400 6.291377 TGTCCCTCAAATGAATGTATCTAGC 58.709 40.000 0.00 0.00 0.00 3.42
400 401 8.616076 GTTTGTCCCTCAAATGAATGTATCTAG 58.384 37.037 0.00 0.00 45.88 2.43
401 402 8.328758 AGTTTGTCCCTCAAATGAATGTATCTA 58.671 33.333 0.00 0.00 45.88 1.98
402 403 7.177878 AGTTTGTCCCTCAAATGAATGTATCT 58.822 34.615 0.00 0.00 45.88 1.98
403 404 7.396540 AGTTTGTCCCTCAAATGAATGTATC 57.603 36.000 0.00 0.00 45.88 2.24
404 405 7.781324 AAGTTTGTCCCTCAAATGAATGTAT 57.219 32.000 0.00 0.00 45.88 2.29
405 406 7.595819 AAAGTTTGTCCCTCAAATGAATGTA 57.404 32.000 0.00 0.00 45.88 2.29
406 407 6.484364 AAAGTTTGTCCCTCAAATGAATGT 57.516 33.333 0.00 0.00 45.88 2.71
407 408 7.306749 CGAAAAAGTTTGTCCCTCAAATGAATG 60.307 37.037 0.00 0.00 45.88 2.67
408 409 6.701400 CGAAAAAGTTTGTCCCTCAAATGAAT 59.299 34.615 0.00 0.00 45.88 2.57
409 410 6.039616 CGAAAAAGTTTGTCCCTCAAATGAA 58.960 36.000 0.00 0.00 45.88 2.57
410 411 5.451242 CCGAAAAAGTTTGTCCCTCAAATGA 60.451 40.000 0.00 0.00 45.88 2.57
411 412 4.744631 CCGAAAAAGTTTGTCCCTCAAATG 59.255 41.667 0.00 0.00 45.88 2.32
412 413 4.647399 TCCGAAAAAGTTTGTCCCTCAAAT 59.353 37.500 0.00 0.00 45.88 2.32
413 414 4.017808 TCCGAAAAAGTTTGTCCCTCAAA 58.982 39.130 0.00 0.00 42.79 2.69
414 415 3.379057 GTCCGAAAAAGTTTGTCCCTCAA 59.621 43.478 0.00 0.00 0.00 3.02
415 416 2.946990 GTCCGAAAAAGTTTGTCCCTCA 59.053 45.455 0.00 0.00 0.00 3.86
416 417 2.032290 CGTCCGAAAAAGTTTGTCCCTC 60.032 50.000 0.00 0.00 0.00 4.30
417 418 1.944709 CGTCCGAAAAAGTTTGTCCCT 59.055 47.619 0.00 0.00 0.00 4.20
418 419 1.002142 CCGTCCGAAAAAGTTTGTCCC 60.002 52.381 0.00 0.00 0.00 4.46
419 420 1.941975 TCCGTCCGAAAAAGTTTGTCC 59.058 47.619 0.00 0.00 0.00 4.02
420 421 2.867975 TCTCCGTCCGAAAAAGTTTGTC 59.132 45.455 0.00 0.00 0.00 3.18
421 422 2.870411 CTCTCCGTCCGAAAAAGTTTGT 59.130 45.455 0.00 0.00 0.00 2.83
422 423 3.128349 TCTCTCCGTCCGAAAAAGTTTG 58.872 45.455 0.00 0.00 0.00 2.93
423 424 3.181468 ACTCTCTCCGTCCGAAAAAGTTT 60.181 43.478 0.00 0.00 0.00 2.66
424 425 2.364647 ACTCTCTCCGTCCGAAAAAGTT 59.635 45.455 0.00 0.00 0.00 2.66
425 426 1.962100 ACTCTCTCCGTCCGAAAAAGT 59.038 47.619 0.00 0.00 0.00 2.66
426 427 2.726832 ACTCTCTCCGTCCGAAAAAG 57.273 50.000 0.00 0.00 0.00 2.27
427 428 3.152341 ACTACTCTCTCCGTCCGAAAAA 58.848 45.455 0.00 0.00 0.00 1.94
428 429 2.787994 ACTACTCTCTCCGTCCGAAAA 58.212 47.619 0.00 0.00 0.00 2.29
429 430 2.486472 ACTACTCTCTCCGTCCGAAA 57.514 50.000 0.00 0.00 0.00 3.46
430 431 2.486472 AACTACTCTCTCCGTCCGAA 57.514 50.000 0.00 0.00 0.00 4.30
431 432 3.616956 TTAACTACTCTCTCCGTCCGA 57.383 47.619 0.00 0.00 0.00 4.55
432 433 4.575645 AGATTTAACTACTCTCTCCGTCCG 59.424 45.833 0.00 0.00 0.00 4.79
433 434 5.357596 ACAGATTTAACTACTCTCTCCGTCC 59.642 44.000 0.00 0.00 0.00 4.79
434 435 6.439675 ACAGATTTAACTACTCTCTCCGTC 57.560 41.667 0.00 0.00 0.00 4.79
435 436 5.357596 GGACAGATTTAACTACTCTCTCCGT 59.642 44.000 0.00 0.00 0.00 4.69
436 437 5.504337 CGGACAGATTTAACTACTCTCTCCG 60.504 48.000 2.01 2.01 39.86 4.63
437 438 5.221087 CCGGACAGATTTAACTACTCTCTCC 60.221 48.000 0.00 0.00 0.00 3.71
438 439 5.357596 ACCGGACAGATTTAACTACTCTCTC 59.642 44.000 9.46 0.00 0.00 3.20
439 440 5.125739 CACCGGACAGATTTAACTACTCTCT 59.874 44.000 9.46 0.00 0.00 3.10
440 441 5.125097 TCACCGGACAGATTTAACTACTCTC 59.875 44.000 9.46 0.00 0.00 3.20
441 442 5.014858 TCACCGGACAGATTTAACTACTCT 58.985 41.667 9.46 0.00 0.00 3.24
442 443 5.320549 TCACCGGACAGATTTAACTACTC 57.679 43.478 9.46 0.00 0.00 2.59
443 444 5.421056 TCATCACCGGACAGATTTAACTACT 59.579 40.000 9.46 0.00 0.00 2.57
444 445 5.657474 TCATCACCGGACAGATTTAACTAC 58.343 41.667 9.46 0.00 0.00 2.73
445 446 5.925506 TCATCACCGGACAGATTTAACTA 57.074 39.130 9.46 0.00 0.00 2.24
446 447 4.819105 TCATCACCGGACAGATTTAACT 57.181 40.909 9.46 0.00 0.00 2.24
447 448 4.935808 AGTTCATCACCGGACAGATTTAAC 59.064 41.667 9.46 13.89 0.00 2.01
448 449 5.160607 AGTTCATCACCGGACAGATTTAA 57.839 39.130 9.46 2.95 0.00 1.52
449 450 4.819105 AGTTCATCACCGGACAGATTTA 57.181 40.909 9.46 0.00 0.00 1.40
450 451 3.703001 AGTTCATCACCGGACAGATTT 57.297 42.857 9.46 0.00 0.00 2.17
451 452 3.430929 GCTAGTTCATCACCGGACAGATT 60.431 47.826 9.46 0.00 0.00 2.40
452 453 2.101582 GCTAGTTCATCACCGGACAGAT 59.898 50.000 9.46 5.64 0.00 2.90
453 454 1.476891 GCTAGTTCATCACCGGACAGA 59.523 52.381 9.46 2.95 0.00 3.41
454 455 1.478510 AGCTAGTTCATCACCGGACAG 59.521 52.381 9.46 0.00 0.00 3.51
455 456 1.476891 GAGCTAGTTCATCACCGGACA 59.523 52.381 9.46 0.00 0.00 4.02
456 457 1.751924 AGAGCTAGTTCATCACCGGAC 59.248 52.381 9.46 0.00 0.00 4.79
457 458 2.145397 AGAGCTAGTTCATCACCGGA 57.855 50.000 9.46 0.00 0.00 5.14
458 459 2.969628 AAGAGCTAGTTCATCACCGG 57.030 50.000 9.43 0.00 0.00 5.28
459 460 3.304559 CGAAAAGAGCTAGTTCATCACCG 59.695 47.826 9.43 2.36 0.00 4.94
460 461 3.619038 CCGAAAAGAGCTAGTTCATCACC 59.381 47.826 9.43 0.00 0.00 4.02
461 462 4.246458 ACCGAAAAGAGCTAGTTCATCAC 58.754 43.478 9.43 0.00 0.00 3.06
462 463 4.495422 GACCGAAAAGAGCTAGTTCATCA 58.505 43.478 9.43 0.00 0.00 3.07
463 464 3.548268 CGACCGAAAAGAGCTAGTTCATC 59.452 47.826 9.43 3.62 0.00 2.92
464 465 3.056749 ACGACCGAAAAGAGCTAGTTCAT 60.057 43.478 9.43 0.00 0.00 2.57
465 466 2.295349 ACGACCGAAAAGAGCTAGTTCA 59.705 45.455 9.43 0.00 0.00 3.18
466 467 2.916089 GACGACCGAAAAGAGCTAGTTC 59.084 50.000 0.00 0.00 0.00 3.01
467 468 2.352519 GGACGACCGAAAAGAGCTAGTT 60.353 50.000 0.00 0.00 0.00 2.24
468 469 1.201880 GGACGACCGAAAAGAGCTAGT 59.798 52.381 0.00 0.00 0.00 2.57
469 470 1.910688 GGACGACCGAAAAGAGCTAG 58.089 55.000 0.00 0.00 0.00 3.42
471 472 4.990288 GGACGACCGAAAAGAGCT 57.010 55.556 0.00 0.00 0.00 4.09
481 482 1.486439 TTTTTGTACGTCGGACGACC 58.514 50.000 34.40 23.07 46.05 4.79
482 483 3.776043 AATTTTTGTACGTCGGACGAC 57.224 42.857 34.40 25.57 46.05 4.34
483 484 4.385447 CCTAAATTTTTGTACGTCGGACGA 59.615 41.667 34.40 16.60 46.05 4.20
485 486 5.050159 ACACCTAAATTTTTGTACGTCGGAC 60.050 40.000 0.00 0.00 0.00 4.79
486 487 5.055812 ACACCTAAATTTTTGTACGTCGGA 58.944 37.500 0.00 0.00 0.00 4.55
487 488 5.347012 ACACCTAAATTTTTGTACGTCGG 57.653 39.130 0.00 0.00 0.00 4.79
488 489 7.337150 TCTACACCTAAATTTTTGTACGTCG 57.663 36.000 0.00 0.00 0.00 5.12
489 490 7.691050 GCATCTACACCTAAATTTTTGTACGTC 59.309 37.037 0.00 0.00 0.00 4.34
490 491 7.389607 AGCATCTACACCTAAATTTTTGTACGT 59.610 33.333 0.00 0.00 0.00 3.57
491 492 7.748847 AGCATCTACACCTAAATTTTTGTACG 58.251 34.615 0.00 0.00 0.00 3.67
492 493 7.903431 CGAGCATCTACACCTAAATTTTTGTAC 59.097 37.037 0.00 0.00 0.00 2.90
493 494 7.604927 ACGAGCATCTACACCTAAATTTTTGTA 59.395 33.333 0.00 1.82 0.00 2.41
494 495 6.430000 ACGAGCATCTACACCTAAATTTTTGT 59.570 34.615 0.00 0.64 0.00 2.83
495 496 6.842163 ACGAGCATCTACACCTAAATTTTTG 58.158 36.000 0.00 0.00 0.00 2.44
496 497 8.448615 GTTACGAGCATCTACACCTAAATTTTT 58.551 33.333 0.00 0.00 0.00 1.94
497 498 7.065443 GGTTACGAGCATCTACACCTAAATTTT 59.935 37.037 0.00 0.00 0.00 1.82
498 499 6.537660 GGTTACGAGCATCTACACCTAAATTT 59.462 38.462 0.00 0.00 0.00 1.82
499 500 6.047231 GGTTACGAGCATCTACACCTAAATT 58.953 40.000 0.00 0.00 0.00 1.82
500 501 5.128171 TGGTTACGAGCATCTACACCTAAAT 59.872 40.000 0.00 0.00 0.00 1.40
501 502 4.463539 TGGTTACGAGCATCTACACCTAAA 59.536 41.667 0.00 0.00 0.00 1.85
502 503 4.018490 TGGTTACGAGCATCTACACCTAA 58.982 43.478 0.00 0.00 0.00 2.69
503 504 3.623703 TGGTTACGAGCATCTACACCTA 58.376 45.455 0.00 0.00 0.00 3.08
504 505 2.453521 TGGTTACGAGCATCTACACCT 58.546 47.619 0.00 0.00 0.00 4.00
505 506 2.953466 TGGTTACGAGCATCTACACC 57.047 50.000 0.00 0.00 0.00 4.16
506 507 6.897259 TTTATTGGTTACGAGCATCTACAC 57.103 37.500 0.00 0.00 32.51 2.90
507 508 6.314400 GGTTTTATTGGTTACGAGCATCTACA 59.686 38.462 0.00 0.00 32.51 2.74
508 509 6.238293 GGGTTTTATTGGTTACGAGCATCTAC 60.238 42.308 0.00 0.00 32.51 2.59
509 510 5.818857 GGGTTTTATTGGTTACGAGCATCTA 59.181 40.000 0.00 0.00 32.51 1.98
510 511 4.638865 GGGTTTTATTGGTTACGAGCATCT 59.361 41.667 0.00 0.00 32.51 2.90
511 512 4.201980 GGGGTTTTATTGGTTACGAGCATC 60.202 45.833 0.00 0.00 32.51 3.91
512 513 3.697542 GGGGTTTTATTGGTTACGAGCAT 59.302 43.478 0.00 0.00 32.51 3.79
513 514 3.083293 GGGGTTTTATTGGTTACGAGCA 58.917 45.455 0.00 0.00 0.00 4.26
514 515 3.083293 TGGGGTTTTATTGGTTACGAGC 58.917 45.455 0.00 0.00 0.00 5.03
515 516 4.581868 TCTGGGGTTTTATTGGTTACGAG 58.418 43.478 0.00 0.00 0.00 4.18
516 517 4.637387 TCTGGGGTTTTATTGGTTACGA 57.363 40.909 0.00 0.00 0.00 3.43
517 518 4.157105 CCTTCTGGGGTTTTATTGGTTACG 59.843 45.833 0.00 0.00 0.00 3.18
518 519 4.081862 GCCTTCTGGGGTTTTATTGGTTAC 60.082 45.833 0.00 0.00 35.12 2.50
519 520 4.090819 GCCTTCTGGGGTTTTATTGGTTA 58.909 43.478 0.00 0.00 35.12 2.85
520 521 2.903784 GCCTTCTGGGGTTTTATTGGTT 59.096 45.455 0.00 0.00 35.12 3.67
521 522 2.158234 TGCCTTCTGGGGTTTTATTGGT 60.158 45.455 0.00 0.00 35.12 3.67
522 523 2.534990 TGCCTTCTGGGGTTTTATTGG 58.465 47.619 0.00 0.00 35.12 3.16
523 524 4.383010 GGAATGCCTTCTGGGGTTTTATTG 60.383 45.833 1.62 0.00 35.12 1.90
524 525 3.774766 GGAATGCCTTCTGGGGTTTTATT 59.225 43.478 1.62 0.00 35.12 1.40
525 526 3.374764 GGAATGCCTTCTGGGGTTTTAT 58.625 45.455 1.62 0.00 35.12 1.40
526 527 2.558800 GGGAATGCCTTCTGGGGTTTTA 60.559 50.000 1.62 0.00 35.12 1.52
527 528 1.644509 GGAATGCCTTCTGGGGTTTT 58.355 50.000 1.62 0.00 35.12 2.43
528 529 0.252239 GGGAATGCCTTCTGGGGTTT 60.252 55.000 1.62 0.00 35.12 3.27
529 530 1.388133 GGGAATGCCTTCTGGGGTT 59.612 57.895 1.62 0.00 35.12 4.11
530 531 2.983879 CGGGAATGCCTTCTGGGGT 61.984 63.158 1.62 0.00 35.12 4.95
531 532 1.632018 TACGGGAATGCCTTCTGGGG 61.632 60.000 1.62 0.00 35.12 4.96
532 533 0.254747 TTACGGGAATGCCTTCTGGG 59.745 55.000 1.62 0.00 38.36 4.45
533 534 1.668419 CTTACGGGAATGCCTTCTGG 58.332 55.000 1.62 0.00 0.00 3.86
534 535 1.209504 TCCTTACGGGAATGCCTTCTG 59.790 52.381 1.62 0.00 41.91 3.02
535 536 1.580059 TCCTTACGGGAATGCCTTCT 58.420 50.000 1.62 0.00 41.91 2.85
544 545 7.340256 TGCTAAAAATATTCTTCCTTACGGGA 58.660 34.615 0.00 0.00 43.41 5.14
545 546 7.497909 TCTGCTAAAAATATTCTTCCTTACGGG 59.502 37.037 0.00 0.00 0.00 5.28
546 547 8.433421 TCTGCTAAAAATATTCTTCCTTACGG 57.567 34.615 0.00 0.00 0.00 4.02
547 548 9.314321 TCTCTGCTAAAAATATTCTTCCTTACG 57.686 33.333 0.00 0.00 0.00 3.18
576 577 9.928618 TCCCAAATGTCCTTTTATTCATATGTA 57.071 29.630 1.90 0.00 0.00 2.29
577 578 8.837099 TCCCAAATGTCCTTTTATTCATATGT 57.163 30.769 1.90 0.00 0.00 2.29
581 582 9.492730 AGTAATCCCAAATGTCCTTTTATTCAT 57.507 29.630 0.00 0.00 0.00 2.57
582 583 8.893563 AGTAATCCCAAATGTCCTTTTATTCA 57.106 30.769 0.00 0.00 0.00 2.57
597 598 9.877222 TGAGACTGTCTTATATAGTAATCCCAA 57.123 33.333 12.27 0.00 28.18 4.12
605 606 9.250624 GCGAAAAATGAGACTGTCTTATATAGT 57.749 33.333 14.52 2.50 31.20 2.12
606 607 9.249457 TGCGAAAAATGAGACTGTCTTATATAG 57.751 33.333 14.52 6.97 0.00 1.31
607 608 9.249457 CTGCGAAAAATGAGACTGTCTTATATA 57.751 33.333 14.52 0.00 0.00 0.86
608 609 7.766278 ACTGCGAAAAATGAGACTGTCTTATAT 59.234 33.333 14.52 6.45 0.00 0.86
609 610 7.063426 CACTGCGAAAAATGAGACTGTCTTATA 59.937 37.037 14.52 4.49 0.00 0.98
610 611 5.934625 ACTGCGAAAAATGAGACTGTCTTAT 59.065 36.000 12.27 10.55 0.00 1.73
614 615 3.803555 CACTGCGAAAAATGAGACTGTC 58.196 45.455 0.00 0.00 0.00 3.51
732 734 6.650120 TCTTTTCTCTTTGGAAGTGTGTAGT 58.350 36.000 0.00 0.00 0.00 2.73
753 756 1.203063 GGAGGGAAGGGTGCTTTTCTT 60.203 52.381 0.00 0.00 0.00 2.52
754 757 0.405973 GGAGGGAAGGGTGCTTTTCT 59.594 55.000 0.00 0.00 0.00 2.52
755 758 0.112412 TGGAGGGAAGGGTGCTTTTC 59.888 55.000 0.00 0.00 0.00 2.29
762 765 0.722676 TCTACCATGGAGGGAAGGGT 59.277 55.000 21.47 0.00 43.89 4.34
770 775 3.264450 AGTTCCCAAAGTCTACCATGGAG 59.736 47.826 21.47 11.72 34.82 3.86
790 795 0.108329 GGCTGCATACGTACACCAGT 60.108 55.000 15.88 0.00 0.00 4.00
795 800 2.581138 CGCGGCTGCATACGTACA 60.581 61.111 19.50 0.00 42.97 2.90
796 801 2.278336 TCGCGGCTGCATACGTAC 60.278 61.111 19.50 0.00 42.97 3.67
797 802 2.025584 CTCGCGGCTGCATACGTA 59.974 61.111 19.50 0.00 42.97 3.57
798 803 3.758088 CTCTCGCGGCTGCATACGT 62.758 63.158 19.50 0.00 42.97 3.57
816 821 0.395173 AGTGTGTTGGTGGGTTGGAC 60.395 55.000 0.00 0.00 0.00 4.02
828 833 1.202486 CGTGGGAGTGTGTAGTGTGTT 60.202 52.381 0.00 0.00 0.00 3.32
881 886 5.277058 GCGATTTTCTTGCGAGTTATCTGAT 60.277 40.000 0.00 0.00 0.00 2.90
948 953 1.330655 GGATGGCCGAGGAGTGAAGA 61.331 60.000 0.00 0.00 0.00 2.87
967 972 0.252012 AGTGGAGTGAGGTGGGAGAG 60.252 60.000 0.00 0.00 0.00 3.20
2106 2144 3.583276 GACGTCCGGTGTCATGGCA 62.583 63.158 19.97 0.00 36.37 4.92
2410 2471 7.288852 TCAGGTGAAGAAACCAAAAATAATGGA 59.711 33.333 0.00 0.00 43.20 3.41
2539 2632 2.097036 CATGACACCAATCTGCCATGT 58.903 47.619 0.00 0.00 0.00 3.21
2614 2711 1.342074 TTCCCACTCACCTGTCTCTG 58.658 55.000 0.00 0.00 0.00 3.35
2675 2777 3.538591 CACCAGCAGAATCTAATGCAGA 58.461 45.455 0.00 0.00 45.01 4.26
2677 2779 2.646930 CCACCAGCAGAATCTAATGCA 58.353 47.619 0.00 0.00 45.01 3.96
2697 2800 2.804933 GCAGAGTAGAGTAGGCCAATGC 60.805 54.545 5.01 0.00 0.00 3.56
2703 2806 4.062991 GAGTAGAGCAGAGTAGAGTAGGC 58.937 52.174 0.00 0.00 0.00 3.93
2795 2898 1.205064 CTTTCGTTCCTGCACTGCG 59.795 57.895 0.00 0.00 0.00 5.18
2831 2934 2.160205 GAACCTTAGACAAAGTGCCCC 58.840 52.381 0.00 0.00 32.89 5.80
2854 3138 0.933047 GCGGTTTTTGGCGTCTGAAC 60.933 55.000 0.00 0.00 0.00 3.18
2855 3139 1.357334 GCGGTTTTTGGCGTCTGAA 59.643 52.632 0.00 0.00 0.00 3.02
2856 3140 2.548295 GGCGGTTTTTGGCGTCTGA 61.548 57.895 0.00 0.00 0.00 3.27
2898 3182 9.774742 CACTGTATAAAATTGCTAGGTTTCTTC 57.225 33.333 0.00 0.00 0.00 2.87
2920 3204 9.651718 GTTTTAGTTTCTTATCAGAACACACTG 57.348 33.333 3.68 0.00 38.86 3.66
2926 3210 9.216117 TGCTAGGTTTTAGTTTCTTATCAGAAC 57.784 33.333 0.00 0.00 38.86 3.01
2946 4113 5.649782 ATTTCCAAAATGAGTGTGCTAGG 57.350 39.130 0.00 0.00 0.00 3.02
2949 4116 7.611467 TGTCTATATTTCCAAAATGAGTGTGCT 59.389 33.333 0.00 0.00 0.00 4.40
2950 4117 7.698130 GTGTCTATATTTCCAAAATGAGTGTGC 59.302 37.037 0.00 0.00 0.00 4.57
2951 4118 8.950210 AGTGTCTATATTTCCAAAATGAGTGTG 58.050 33.333 0.00 0.00 0.00 3.82
2954 4121 9.739276 TCAAGTGTCTATATTTCCAAAATGAGT 57.261 29.630 0.00 0.00 0.00 3.41
2955 4122 9.994432 GTCAAGTGTCTATATTTCCAAAATGAG 57.006 33.333 0.00 0.00 0.00 2.90
2956 4123 9.513906 TGTCAAGTGTCTATATTTCCAAAATGA 57.486 29.630 0.00 0.00 0.00 2.57
2964 4131 9.155975 ACATGTTCTGTCAAGTGTCTATATTTC 57.844 33.333 0.00 0.00 29.94 2.17
2966 4133 9.809096 CTACATGTTCTGTCAAGTGTCTATATT 57.191 33.333 2.30 0.00 39.39 1.28
2971 4654 5.069119 TCACTACATGTTCTGTCAAGTGTCT 59.931 40.000 17.76 0.00 41.86 3.41
2972 4655 5.289595 TCACTACATGTTCTGTCAAGTGTC 58.710 41.667 17.76 0.00 41.86 3.67
2983 4666 3.100671 AGGGGTCTCTCACTACATGTTC 58.899 50.000 2.30 0.00 0.00 3.18
2984 4667 2.834549 CAGGGGTCTCTCACTACATGTT 59.165 50.000 2.30 0.00 0.00 2.71
2989 4672 2.025131 ACTACCAGGGGTCTCTCACTAC 60.025 54.545 0.00 0.00 37.09 2.73
3048 4841 8.926092 ATCATTCTGAACATGATCATTCTGAT 57.074 30.769 15.31 10.99 36.80 2.90
3135 4928 3.552875 GAATAGGCCCAGGAACTAAACC 58.447 50.000 0.00 0.00 36.02 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.