Multiple sequence alignment - TraesCS3D01G353000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G353000 chr3D 100.000 2584 0 0 1 2584 463681184 463678601 0.000000e+00 4772.0
1 TraesCS3D01G353000 chr3D 90.960 177 14 2 227 401 552559710 552559534 1.200000e-58 237.0
2 TraesCS3D01G353000 chr3A 91.529 2125 115 31 492 2583 606741283 606739191 0.000000e+00 2867.0
3 TraesCS3D01G353000 chr3A 87.500 152 17 2 255 404 641638614 641638765 9.500000e-40 174.0
4 TraesCS3D01G353000 chr3A 86.620 142 17 2 264 403 703272013 703272154 3.440000e-34 156.0
5 TraesCS3D01G353000 chr3B 91.108 1237 75 18 473 1678 617250214 617248982 0.000000e+00 1642.0
6 TraesCS3D01G353000 chr3B 90.816 98 8 1 33 129 817064610 817064513 2.090000e-26 130.0
7 TraesCS3D01G353000 chr1B 91.600 500 29 5 1024 1523 192771098 192770612 0.000000e+00 678.0
8 TraesCS3D01G353000 chr1B 92.523 107 5 3 1570 1675 192770615 192770511 1.600000e-32 150.0
9 TraesCS3D01G353000 chr5B 77.750 791 169 7 1794 2581 553272325 553273111 1.800000e-131 479.0
10 TraesCS3D01G353000 chr5B 90.426 94 9 0 33 126 48848777 48848684 9.710000e-25 124.0
11 TraesCS3D01G353000 chr2D 91.620 179 12 3 223 399 118892169 118892346 7.140000e-61 244.0
12 TraesCS3D01G353000 chr2D 87.166 187 15 2 227 404 646607307 646607493 1.210000e-48 204.0
13 TraesCS3D01G353000 chr2D 90.426 94 8 1 33 125 347450691 347450784 3.490000e-24 122.0
14 TraesCS3D01G353000 chr4A 87.640 178 19 2 227 403 67005735 67005910 1.210000e-48 204.0
15 TraesCS3D01G353000 chr4A 87.931 174 18 3 234 404 641837841 641837668 4.360000e-48 202.0
16 TraesCS3D01G353000 chr4A 91.579 95 6 2 33 126 542123222 542123315 2.090000e-26 130.0
17 TraesCS3D01G353000 chrUn 87.931 174 18 3 234 404 263357895 263357722 4.360000e-48 202.0
18 TraesCS3D01G353000 chrUn 94.565 92 5 0 314 405 263357897 263357988 2.680000e-30 143.0
19 TraesCS3D01G353000 chrUn 90.526 95 6 3 34 126 89803074 89802981 3.490000e-24 122.0
20 TraesCS3D01G353000 chrUn 100.000 32 0 0 1 32 48224460 48224429 2.780000e-05 60.2
21 TraesCS3D01G353000 chrUn 100.000 32 0 0 1 32 48225768 48225737 2.780000e-05 60.2
22 TraesCS3D01G353000 chrUn 100.000 32 0 0 1 32 81889314 81889345 2.780000e-05 60.2
23 TraesCS3D01G353000 chrUn 100.000 32 0 0 1 32 421392421 421392390 2.780000e-05 60.2
24 TraesCS3D01G353000 chr1D 92.553 94 6 1 33 125 222735695 222735788 1.610000e-27 134.0
25 TraesCS3D01G353000 chr2B 90.909 99 7 2 33 130 212184521 212184424 5.800000e-27 132.0
26 TraesCS3D01G353000 chr7B 91.579 95 7 1 33 126 729232928 729233022 2.090000e-26 130.0
27 TraesCS3D01G353000 chr2A 91.579 95 7 1 33 126 666840708 666840614 2.090000e-26 130.0
28 TraesCS3D01G353000 chr6D 100.000 32 0 0 1 32 178135437 178135468 2.780000e-05 60.2
29 TraesCS3D01G353000 chr6D 100.000 32 0 0 1 32 435432654 435432623 2.780000e-05 60.2
30 TraesCS3D01G353000 chr6D 100.000 32 0 0 1 32 467209425 467209456 2.780000e-05 60.2
31 TraesCS3D01G353000 chr5D 100.000 32 0 0 1 32 526611249 526611280 2.780000e-05 60.2
32 TraesCS3D01G353000 chr4D 100.000 32 0 0 1 32 354826043 354826074 2.780000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G353000 chr3D 463678601 463681184 2583 True 4772 4772 100.0000 1 2584 1 chr3D.!!$R1 2583
1 TraesCS3D01G353000 chr3A 606739191 606741283 2092 True 2867 2867 91.5290 492 2583 1 chr3A.!!$R1 2091
2 TraesCS3D01G353000 chr3B 617248982 617250214 1232 True 1642 1642 91.1080 473 1678 1 chr3B.!!$R1 1205
3 TraesCS3D01G353000 chr1B 192770511 192771098 587 True 414 678 92.0615 1024 1675 2 chr1B.!!$R1 651
4 TraesCS3D01G353000 chr5B 553272325 553273111 786 False 479 479 77.7500 1794 2581 1 chr5B.!!$F1 787

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.034337 TGGATAATTACGGGGCGAGC 59.966 55.0 0.0 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2162 2220 0.24912 CTCGATGCCTTGTACCCACA 59.751 55.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.930336 TGAGCCGGCATATCATCTTAAG 58.070 45.455 31.54 0.00 0.00 1.85
22 23 3.578282 TGAGCCGGCATATCATCTTAAGA 59.422 43.478 31.54 7.82 0.00 2.10
23 24 4.223700 TGAGCCGGCATATCATCTTAAGAT 59.776 41.667 31.54 12.37 34.56 2.40
24 25 5.171339 AGCCGGCATATCATCTTAAGATT 57.829 39.130 31.54 5.12 31.21 2.40
25 26 5.564550 AGCCGGCATATCATCTTAAGATTT 58.435 37.500 31.54 8.78 31.21 2.17
26 27 6.711277 AGCCGGCATATCATCTTAAGATTTA 58.289 36.000 31.54 10.60 31.21 1.40
27 28 6.595716 AGCCGGCATATCATCTTAAGATTTAC 59.404 38.462 31.54 2.79 31.21 2.01
28 29 6.455646 GCCGGCATATCATCTTAAGATTTACG 60.456 42.308 24.80 12.15 31.21 3.18
29 30 6.811665 CCGGCATATCATCTTAAGATTTACGA 59.188 38.462 15.49 10.07 31.21 3.43
30 31 7.330946 CCGGCATATCATCTTAAGATTTACGAA 59.669 37.037 15.49 0.00 31.21 3.85
31 32 8.376203 CGGCATATCATCTTAAGATTTACGAAG 58.624 37.037 15.49 3.04 31.21 3.79
32 33 9.424319 GGCATATCATCTTAAGATTTACGAAGA 57.576 33.333 15.49 8.34 31.21 2.87
52 53 8.070171 ACGAAGAATAAATCCAAGAATAATGCG 58.930 33.333 0.00 0.00 0.00 4.73
53 54 8.282592 CGAAGAATAAATCCAAGAATAATGCGA 58.717 33.333 0.00 0.00 0.00 5.10
54 55 9.604626 GAAGAATAAATCCAAGAATAATGCGAG 57.395 33.333 0.00 0.00 0.00 5.03
55 56 7.588512 AGAATAAATCCAAGAATAATGCGAGC 58.411 34.615 0.00 0.00 0.00 5.03
56 57 6.882610 ATAAATCCAAGAATAATGCGAGCA 57.117 33.333 0.00 0.00 0.00 4.26
57 58 4.558538 AATCCAAGAATAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
58 59 2.288666 TCCAAGAATAATGCGAGCACC 58.711 47.619 0.00 0.00 0.00 5.01
59 60 2.016318 CCAAGAATAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
60 61 2.032550 CCAAGAATAATGCGAGCACCAG 59.967 50.000 0.00 0.00 0.00 4.00
61 62 1.959042 AGAATAATGCGAGCACCAGG 58.041 50.000 0.00 0.00 0.00 4.45
62 63 1.486310 AGAATAATGCGAGCACCAGGA 59.514 47.619 0.00 0.00 0.00 3.86
63 64 1.599542 GAATAATGCGAGCACCAGGAC 59.400 52.381 0.00 0.00 0.00 3.85
64 65 0.833287 ATAATGCGAGCACCAGGACT 59.167 50.000 0.00 0.00 0.00 3.85
65 66 0.613260 TAATGCGAGCACCAGGACTT 59.387 50.000 0.00 0.00 0.00 3.01
66 67 0.957395 AATGCGAGCACCAGGACTTG 60.957 55.000 0.00 0.00 0.00 3.16
67 68 1.830587 ATGCGAGCACCAGGACTTGA 61.831 55.000 0.00 0.00 0.00 3.02
68 69 1.301716 GCGAGCACCAGGACTTGAA 60.302 57.895 0.00 0.00 0.00 2.69
69 70 1.569479 GCGAGCACCAGGACTTGAAC 61.569 60.000 0.00 0.00 0.00 3.18
70 71 0.951040 CGAGCACCAGGACTTGAACC 60.951 60.000 0.00 0.00 0.00 3.62
71 72 0.398318 GAGCACCAGGACTTGAACCT 59.602 55.000 0.00 0.00 38.40 3.50
77 78 2.155065 AGGACTTGAACCTGGTGGG 58.845 57.895 0.00 0.00 36.30 4.61
88 89 0.546598 CCTGGTGGGTTGAGGATACC 59.453 60.000 0.00 0.00 34.82 2.73
89 90 1.285280 CTGGTGGGTTGAGGATACCA 58.715 55.000 0.00 0.00 38.98 3.25
93 94 2.038863 TGGGTTGAGGATACCACTGT 57.961 50.000 0.00 0.00 37.40 3.55
94 95 1.906574 TGGGTTGAGGATACCACTGTC 59.093 52.381 0.00 0.00 37.40 3.51
95 96 2.188817 GGGTTGAGGATACCACTGTCT 58.811 52.381 0.00 0.00 37.40 3.41
96 97 2.168728 GGGTTGAGGATACCACTGTCTC 59.831 54.545 0.00 0.00 37.40 3.36
97 98 3.100671 GGTTGAGGATACCACTGTCTCT 58.899 50.000 0.00 0.00 35.67 3.10
98 99 3.515901 GGTTGAGGATACCACTGTCTCTT 59.484 47.826 0.00 0.00 35.67 2.85
99 100 4.020128 GGTTGAGGATACCACTGTCTCTTT 60.020 45.833 0.00 0.00 35.67 2.52
100 101 5.187186 GGTTGAGGATACCACTGTCTCTTTA 59.813 44.000 0.00 0.00 35.67 1.85
101 102 6.295688 GGTTGAGGATACCACTGTCTCTTTAA 60.296 42.308 0.00 0.00 35.67 1.52
102 103 6.282199 TGAGGATACCACTGTCTCTTTAAC 57.718 41.667 0.00 0.00 37.17 2.01
103 104 5.187186 TGAGGATACCACTGTCTCTTTAACC 59.813 44.000 0.00 0.00 37.17 2.85
104 105 5.091552 AGGATACCACTGTCTCTTTAACCA 58.908 41.667 0.00 0.00 37.17 3.67
105 106 5.726793 AGGATACCACTGTCTCTTTAACCAT 59.273 40.000 0.00 0.00 37.17 3.55
106 107 6.049790 GGATACCACTGTCTCTTTAACCATC 58.950 44.000 0.00 0.00 0.00 3.51
107 108 4.287766 ACCACTGTCTCTTTAACCATCC 57.712 45.455 0.00 0.00 0.00 3.51
108 109 3.650942 ACCACTGTCTCTTTAACCATCCA 59.349 43.478 0.00 0.00 0.00 3.41
109 110 4.104102 ACCACTGTCTCTTTAACCATCCAA 59.896 41.667 0.00 0.00 0.00 3.53
110 111 4.455877 CCACTGTCTCTTTAACCATCCAAC 59.544 45.833 0.00 0.00 0.00 3.77
111 112 4.455877 CACTGTCTCTTTAACCATCCAACC 59.544 45.833 0.00 0.00 0.00 3.77
112 113 4.104102 ACTGTCTCTTTAACCATCCAACCA 59.896 41.667 0.00 0.00 0.00 3.67
113 114 5.222130 ACTGTCTCTTTAACCATCCAACCAT 60.222 40.000 0.00 0.00 0.00 3.55
114 115 6.012858 ACTGTCTCTTTAACCATCCAACCATA 60.013 38.462 0.00 0.00 0.00 2.74
115 116 6.785076 TGTCTCTTTAACCATCCAACCATAA 58.215 36.000 0.00 0.00 0.00 1.90
116 117 6.884295 TGTCTCTTTAACCATCCAACCATAAG 59.116 38.462 0.00 0.00 0.00 1.73
117 118 6.884836 GTCTCTTTAACCATCCAACCATAAGT 59.115 38.462 0.00 0.00 0.00 2.24
118 119 7.393515 GTCTCTTTAACCATCCAACCATAAGTT 59.606 37.037 0.00 0.00 40.16 2.66
127 128 2.325509 AACCATAAGTTGTTTCGCGC 57.674 45.000 0.00 0.00 37.29 6.86
128 129 0.165079 ACCATAAGTTGTTTCGCGCG 59.835 50.000 26.76 26.76 0.00 6.86
129 130 0.440758 CCATAAGTTGTTTCGCGCGA 59.559 50.000 31.40 31.40 0.00 5.87
130 131 1.526986 CCATAAGTTGTTTCGCGCGAG 60.527 52.381 32.74 16.48 0.00 5.03
131 132 1.388768 CATAAGTTGTTTCGCGCGAGA 59.611 47.619 32.74 26.60 0.00 4.04
132 133 0.780002 TAAGTTGTTTCGCGCGAGAC 59.220 50.000 37.48 37.48 0.00 3.36
133 134 1.149361 AAGTTGTTTCGCGCGAGACA 61.149 50.000 41.17 41.17 37.44 3.41
134 135 1.149361 AGTTGTTTCGCGCGAGACAA 61.149 50.000 45.17 45.17 43.71 3.18
135 136 1.274476 TTGTTTCGCGCGAGACAAC 59.726 52.632 45.17 37.53 41.96 3.32
136 137 1.149361 TTGTTTCGCGCGAGACAACT 61.149 50.000 45.17 0.00 41.96 3.16
137 138 1.149361 TGTTTCGCGCGAGACAACTT 61.149 50.000 42.15 0.00 36.50 2.66
138 139 0.718220 GTTTCGCGCGAGACAACTTG 60.718 55.000 38.52 6.93 30.69 3.16
139 140 1.149361 TTTCGCGCGAGACAACTTGT 61.149 50.000 32.74 0.00 0.00 3.16
140 141 1.149361 TTCGCGCGAGACAACTTGTT 61.149 50.000 32.74 0.00 0.00 2.83
141 142 1.437089 CGCGCGAGACAACTTGTTG 60.437 57.895 28.94 11.44 0.00 3.33
142 143 1.082756 GCGCGAGACAACTTGTTGG 60.083 57.895 12.10 1.69 0.00 3.77
143 144 1.569493 CGCGAGACAACTTGTTGGG 59.431 57.895 16.48 5.44 0.00 4.12
144 145 1.157870 CGCGAGACAACTTGTTGGGT 61.158 55.000 16.48 4.38 0.00 4.51
145 146 0.307760 GCGAGACAACTTGTTGGGTG 59.692 55.000 16.48 5.90 0.00 4.61
146 147 1.663695 CGAGACAACTTGTTGGGTGT 58.336 50.000 16.48 0.00 0.00 4.16
147 148 1.330521 CGAGACAACTTGTTGGGTGTG 59.669 52.381 16.48 0.90 0.00 3.82
148 149 1.676006 GAGACAACTTGTTGGGTGTGG 59.324 52.381 16.48 0.00 0.00 4.17
149 150 1.283613 AGACAACTTGTTGGGTGTGGA 59.716 47.619 16.48 0.00 0.00 4.02
150 151 2.091885 AGACAACTTGTTGGGTGTGGAT 60.092 45.455 16.48 0.00 0.00 3.41
151 152 3.137544 AGACAACTTGTTGGGTGTGGATA 59.862 43.478 16.48 0.00 0.00 2.59
152 153 3.886505 GACAACTTGTTGGGTGTGGATAA 59.113 43.478 16.48 0.00 0.00 1.75
153 154 4.479158 ACAACTTGTTGGGTGTGGATAAT 58.521 39.130 16.48 0.00 0.00 1.28
154 155 4.898861 ACAACTTGTTGGGTGTGGATAATT 59.101 37.500 16.48 0.00 0.00 1.40
155 156 6.071984 ACAACTTGTTGGGTGTGGATAATTA 58.928 36.000 16.48 0.00 0.00 1.40
156 157 6.015772 ACAACTTGTTGGGTGTGGATAATTAC 60.016 38.462 16.48 0.00 0.00 1.89
157 158 4.698304 ACTTGTTGGGTGTGGATAATTACG 59.302 41.667 0.00 0.00 0.00 3.18
158 159 3.611970 TGTTGGGTGTGGATAATTACGG 58.388 45.455 0.00 0.00 0.00 4.02
159 160 2.946990 GTTGGGTGTGGATAATTACGGG 59.053 50.000 0.00 0.00 0.00 5.28
160 161 1.491332 TGGGTGTGGATAATTACGGGG 59.509 52.381 0.00 0.00 0.00 5.73
161 162 1.601166 GGTGTGGATAATTACGGGGC 58.399 55.000 0.00 0.00 0.00 5.80
162 163 1.223187 GTGTGGATAATTACGGGGCG 58.777 55.000 0.00 0.00 0.00 6.13
163 164 1.121378 TGTGGATAATTACGGGGCGA 58.879 50.000 0.00 0.00 0.00 5.54
164 165 1.069513 TGTGGATAATTACGGGGCGAG 59.930 52.381 0.00 0.00 0.00 5.03
165 166 0.034337 TGGATAATTACGGGGCGAGC 59.966 55.000 0.00 0.00 0.00 5.03
166 167 1.012486 GGATAATTACGGGGCGAGCG 61.012 60.000 0.00 0.00 0.00 5.03
167 168 1.623973 GATAATTACGGGGCGAGCGC 61.624 60.000 6.27 6.27 41.06 5.92
168 169 2.095978 ATAATTACGGGGCGAGCGCT 62.096 55.000 11.27 11.27 41.60 5.92
169 170 1.454572 TAATTACGGGGCGAGCGCTA 61.455 55.000 11.50 0.00 41.60 4.26
170 171 2.095978 AATTACGGGGCGAGCGCTAT 62.096 55.000 11.50 0.00 41.60 2.97
171 172 2.765250 ATTACGGGGCGAGCGCTATG 62.765 60.000 11.50 7.46 41.60 2.23
174 175 4.971125 GGGGCGAGCGCTATGTCC 62.971 72.222 21.32 21.32 41.60 4.02
176 177 4.570663 GGCGAGCGCTATGTCCGT 62.571 66.667 11.50 0.00 41.60 4.69
177 178 3.025176 GCGAGCGCTATGTCCGTC 61.025 66.667 11.50 1.92 38.26 4.79
178 179 2.716244 CGAGCGCTATGTCCGTCT 59.284 61.111 11.50 0.00 0.00 4.18
179 180 1.369448 CGAGCGCTATGTCCGTCTC 60.369 63.158 11.50 0.00 0.00 3.36
180 181 1.369448 GAGCGCTATGTCCGTCTCG 60.369 63.158 11.50 0.00 0.00 4.04
181 182 2.049475 GAGCGCTATGTCCGTCTCGT 62.049 60.000 11.50 0.00 0.00 4.18
182 183 0.812811 AGCGCTATGTCCGTCTCGTA 60.813 55.000 8.99 0.00 0.00 3.43
183 184 0.656786 GCGCTATGTCCGTCTCGTAC 60.657 60.000 0.00 0.00 0.00 3.67
184 185 0.935898 CGCTATGTCCGTCTCGTACT 59.064 55.000 0.00 0.00 0.00 2.73
185 186 1.070710 CGCTATGTCCGTCTCGTACTC 60.071 57.143 0.00 0.00 0.00 2.59
186 187 2.211806 GCTATGTCCGTCTCGTACTCT 58.788 52.381 0.00 0.00 0.00 3.24
187 188 2.221517 GCTATGTCCGTCTCGTACTCTC 59.778 54.545 0.00 0.00 0.00 3.20
188 189 1.288350 ATGTCCGTCTCGTACTCTCG 58.712 55.000 0.00 0.00 0.00 4.04
189 190 0.037882 TGTCCGTCTCGTACTCTCGT 60.038 55.000 0.00 0.00 0.00 4.18
190 191 1.074752 GTCCGTCTCGTACTCTCGTT 58.925 55.000 0.00 0.00 0.00 3.85
191 192 2.263077 GTCCGTCTCGTACTCTCGTTA 58.737 52.381 0.00 0.00 0.00 3.18
192 193 2.281234 GTCCGTCTCGTACTCTCGTTAG 59.719 54.545 0.00 0.00 0.00 2.34
193 194 2.164422 TCCGTCTCGTACTCTCGTTAGA 59.836 50.000 0.00 0.00 0.00 2.10
194 195 2.281234 CCGTCTCGTACTCTCGTTAGAC 59.719 54.545 0.00 0.00 34.00 2.59
195 196 2.035839 CGTCTCGTACTCTCGTTAGACG 60.036 54.545 8.10 8.10 44.61 4.18
196 197 1.923204 TCTCGTACTCTCGTTAGACGC 59.077 52.381 0.00 0.00 42.21 5.19
197 198 1.925847 CTCGTACTCTCGTTAGACGCT 59.074 52.381 0.00 0.00 42.21 5.07
198 199 1.923204 TCGTACTCTCGTTAGACGCTC 59.077 52.381 0.00 0.00 42.21 5.03
199 200 1.005137 CGTACTCTCGTTAGACGCTCC 60.005 57.143 0.00 0.00 42.21 4.70
200 201 1.330213 GTACTCTCGTTAGACGCTCCC 59.670 57.143 0.00 0.00 42.21 4.30
201 202 0.322277 ACTCTCGTTAGACGCTCCCA 60.322 55.000 0.00 0.00 42.21 4.37
202 203 0.099082 CTCTCGTTAGACGCTCCCAC 59.901 60.000 0.00 0.00 42.21 4.61
203 204 0.322277 TCTCGTTAGACGCTCCCACT 60.322 55.000 0.00 0.00 42.21 4.00
204 205 0.099082 CTCGTTAGACGCTCCCACTC 59.901 60.000 0.00 0.00 42.21 3.51
205 206 1.139095 CGTTAGACGCTCCCACTCC 59.861 63.158 0.00 0.00 33.65 3.85
206 207 1.516423 GTTAGACGCTCCCACTCCC 59.484 63.158 0.00 0.00 0.00 4.30
207 208 1.684734 TTAGACGCTCCCACTCCCC 60.685 63.158 0.00 0.00 0.00 4.81
223 224 4.680237 CCGGTGGAGTGCTCGCAA 62.680 66.667 0.00 0.00 0.00 4.85
224 225 3.414700 CGGTGGAGTGCTCGCAAC 61.415 66.667 0.00 0.00 0.00 4.17
225 226 3.414700 GGTGGAGTGCTCGCAACG 61.415 66.667 0.00 0.00 0.00 4.10
226 227 4.077188 GTGGAGTGCTCGCAACGC 62.077 66.667 0.00 0.00 0.00 4.84
227 228 4.600576 TGGAGTGCTCGCAACGCA 62.601 61.111 0.00 0.00 34.52 5.24
228 229 3.345808 GGAGTGCTCGCAACGCAA 61.346 61.111 0.00 0.00 39.39 4.85
229 230 2.680913 GGAGTGCTCGCAACGCAAT 61.681 57.895 0.00 0.00 39.39 3.56
230 231 1.358725 GGAGTGCTCGCAACGCAATA 61.359 55.000 0.00 0.00 39.39 1.90
231 232 0.442310 GAGTGCTCGCAACGCAATAA 59.558 50.000 0.00 0.00 39.39 1.40
232 233 1.062587 GAGTGCTCGCAACGCAATAAT 59.937 47.619 0.00 0.00 39.39 1.28
233 234 1.182673 GTGCTCGCAACGCAATAATG 58.817 50.000 0.00 0.00 39.39 1.90
248 249 5.402464 CAATAATGCTACACGTACATGCA 57.598 39.130 7.05 7.05 38.05 3.96
249 250 5.197549 CAATAATGCTACACGTACATGCAC 58.802 41.667 6.80 0.00 36.44 4.57
250 251 2.378445 ATGCTACACGTACATGCACA 57.622 45.000 6.80 0.00 36.44 4.57
251 252 2.378445 TGCTACACGTACATGCACAT 57.622 45.000 0.00 0.00 0.00 3.21
252 253 2.694213 TGCTACACGTACATGCACATT 58.306 42.857 0.00 0.00 0.00 2.71
253 254 2.670905 TGCTACACGTACATGCACATTC 59.329 45.455 0.00 0.00 0.00 2.67
254 255 2.930040 GCTACACGTACATGCACATTCT 59.070 45.455 0.00 0.00 0.00 2.40
255 256 4.109766 GCTACACGTACATGCACATTCTA 58.890 43.478 0.00 0.00 0.00 2.10
256 257 4.026804 GCTACACGTACATGCACATTCTAC 60.027 45.833 0.00 0.00 0.00 2.59
257 258 3.920446 ACACGTACATGCACATTCTACA 58.080 40.909 0.00 0.00 0.00 2.74
258 259 3.926527 ACACGTACATGCACATTCTACAG 59.073 43.478 0.00 0.00 0.00 2.74
259 260 4.173256 CACGTACATGCACATTCTACAGA 58.827 43.478 0.00 0.00 0.00 3.41
260 261 4.805719 CACGTACATGCACATTCTACAGAT 59.194 41.667 0.00 0.00 0.00 2.90
261 262 5.291858 CACGTACATGCACATTCTACAGATT 59.708 40.000 0.00 0.00 0.00 2.40
262 263 5.874810 ACGTACATGCACATTCTACAGATTT 59.125 36.000 0.00 0.00 0.00 2.17
263 264 6.371548 ACGTACATGCACATTCTACAGATTTT 59.628 34.615 0.00 0.00 0.00 1.82
264 265 7.094805 ACGTACATGCACATTCTACAGATTTTT 60.095 33.333 0.00 0.00 0.00 1.94
265 266 8.387354 CGTACATGCACATTCTACAGATTTTTA 58.613 33.333 0.00 0.00 0.00 1.52
266 267 9.490663 GTACATGCACATTCTACAGATTTTTAC 57.509 33.333 0.00 0.00 0.00 2.01
267 268 8.109705 ACATGCACATTCTACAGATTTTTACA 57.890 30.769 0.00 0.00 0.00 2.41
268 269 8.239314 ACATGCACATTCTACAGATTTTTACAG 58.761 33.333 0.00 0.00 0.00 2.74
269 270 7.144722 TGCACATTCTACAGATTTTTACAGG 57.855 36.000 0.00 0.00 0.00 4.00
270 271 6.714810 TGCACATTCTACAGATTTTTACAGGT 59.285 34.615 0.00 0.00 0.00 4.00
271 272 7.230510 TGCACATTCTACAGATTTTTACAGGTT 59.769 33.333 0.00 0.00 0.00 3.50
272 273 7.538678 GCACATTCTACAGATTTTTACAGGTTG 59.461 37.037 0.00 0.00 0.00 3.77
273 274 8.783093 CACATTCTACAGATTTTTACAGGTTGA 58.217 33.333 0.00 0.00 0.00 3.18
274 275 9.003658 ACATTCTACAGATTTTTACAGGTTGAG 57.996 33.333 0.00 0.00 0.00 3.02
275 276 7.979444 TTCTACAGATTTTTACAGGTTGAGG 57.021 36.000 0.00 0.00 0.00 3.86
276 277 7.311092 TCTACAGATTTTTACAGGTTGAGGA 57.689 36.000 0.00 0.00 0.00 3.71
277 278 7.159372 TCTACAGATTTTTACAGGTTGAGGAC 58.841 38.462 0.00 0.00 0.00 3.85
278 279 5.941788 ACAGATTTTTACAGGTTGAGGACT 58.058 37.500 0.00 0.00 0.00 3.85
279 280 7.074653 ACAGATTTTTACAGGTTGAGGACTA 57.925 36.000 0.00 0.00 0.00 2.59
280 281 7.690256 ACAGATTTTTACAGGTTGAGGACTAT 58.310 34.615 0.00 0.00 0.00 2.12
281 282 7.607991 ACAGATTTTTACAGGTTGAGGACTATG 59.392 37.037 0.00 0.00 0.00 2.23
282 283 6.599638 AGATTTTTACAGGTTGAGGACTATGC 59.400 38.462 0.00 0.00 0.00 3.14
283 284 3.520290 TTACAGGTTGAGGACTATGCG 57.480 47.619 0.00 0.00 0.00 4.73
284 285 0.108138 ACAGGTTGAGGACTATGCGC 60.108 55.000 0.00 0.00 0.00 6.09
285 286 0.176680 CAGGTTGAGGACTATGCGCT 59.823 55.000 9.73 0.00 0.00 5.92
286 287 0.461961 AGGTTGAGGACTATGCGCTC 59.538 55.000 9.73 0.00 0.00 5.03
287 288 0.461961 GGTTGAGGACTATGCGCTCT 59.538 55.000 9.73 0.00 0.00 4.09
288 289 1.134670 GGTTGAGGACTATGCGCTCTT 60.135 52.381 9.73 0.00 0.00 2.85
289 290 2.197577 GTTGAGGACTATGCGCTCTTC 58.802 52.381 9.73 4.08 0.00 2.87
290 291 1.769026 TGAGGACTATGCGCTCTTCT 58.231 50.000 9.73 0.00 0.00 2.85
291 292 2.932261 TGAGGACTATGCGCTCTTCTA 58.068 47.619 9.73 0.00 0.00 2.10
292 293 3.288092 TGAGGACTATGCGCTCTTCTAA 58.712 45.455 9.73 0.00 0.00 2.10
293 294 3.891977 TGAGGACTATGCGCTCTTCTAAT 59.108 43.478 9.73 0.00 0.00 1.73
294 295 4.342378 TGAGGACTATGCGCTCTTCTAATT 59.658 41.667 9.73 0.00 0.00 1.40
295 296 4.626042 AGGACTATGCGCTCTTCTAATTG 58.374 43.478 9.73 0.00 0.00 2.32
296 297 3.185391 GGACTATGCGCTCTTCTAATTGC 59.815 47.826 9.73 0.00 0.00 3.56
297 298 3.134458 ACTATGCGCTCTTCTAATTGCC 58.866 45.455 9.73 0.00 0.00 4.52
298 299 1.312815 ATGCGCTCTTCTAATTGCCC 58.687 50.000 9.73 0.00 0.00 5.36
299 300 0.748005 TGCGCTCTTCTAATTGCCCC 60.748 55.000 9.73 0.00 0.00 5.80
300 301 1.448119 GCGCTCTTCTAATTGCCCCC 61.448 60.000 0.00 0.00 0.00 5.40
315 316 3.749785 CCCCCTATTTCCACCGGT 58.250 61.111 0.00 0.00 0.00 5.28
316 317 1.226262 CCCCCTATTTCCACCGGTG 59.774 63.158 28.26 28.26 0.00 4.94
331 332 4.382320 GTGGGCCCGTGCGTCTTA 62.382 66.667 19.37 0.00 38.85 2.10
332 333 3.627952 TGGGCCCGTGCGTCTTAA 61.628 61.111 19.37 0.00 38.85 1.85
333 334 2.124860 GGGCCCGTGCGTCTTAAT 60.125 61.111 5.69 0.00 38.85 1.40
334 335 2.178235 GGGCCCGTGCGTCTTAATC 61.178 63.158 5.69 0.00 38.85 1.75
335 336 1.448893 GGCCCGTGCGTCTTAATCA 60.449 57.895 0.00 0.00 38.85 2.57
336 337 1.022451 GGCCCGTGCGTCTTAATCAA 61.022 55.000 0.00 0.00 38.85 2.57
337 338 1.014352 GCCCGTGCGTCTTAATCAAT 58.986 50.000 0.00 0.00 0.00 2.57
338 339 1.003866 GCCCGTGCGTCTTAATCAATC 60.004 52.381 0.00 0.00 0.00 2.67
339 340 1.597663 CCCGTGCGTCTTAATCAATCC 59.402 52.381 0.00 0.00 0.00 3.01
340 341 2.550978 CCGTGCGTCTTAATCAATCCT 58.449 47.619 0.00 0.00 0.00 3.24
341 342 2.540101 CCGTGCGTCTTAATCAATCCTC 59.460 50.000 0.00 0.00 0.00 3.71
342 343 2.216488 CGTGCGTCTTAATCAATCCTCG 59.784 50.000 0.00 0.00 0.00 4.63
343 344 2.540101 GTGCGTCTTAATCAATCCTCGG 59.460 50.000 0.00 0.00 0.00 4.63
344 345 1.527311 GCGTCTTAATCAATCCTCGGC 59.473 52.381 0.00 0.00 0.00 5.54
345 346 2.135933 CGTCTTAATCAATCCTCGGCC 58.864 52.381 0.00 0.00 0.00 6.13
346 347 2.135933 GTCTTAATCAATCCTCGGCCG 58.864 52.381 22.12 22.12 0.00 6.13
347 348 2.036387 TCTTAATCAATCCTCGGCCGA 58.964 47.619 29.03 29.03 0.00 5.54
348 349 2.632996 TCTTAATCAATCCTCGGCCGAT 59.367 45.455 31.19 11.95 0.00 4.18
349 350 2.743636 TAATCAATCCTCGGCCGATC 57.256 50.000 31.19 0.00 0.00 3.69
350 351 0.758734 AATCAATCCTCGGCCGATCA 59.241 50.000 31.19 18.81 0.00 2.92
351 352 0.758734 ATCAATCCTCGGCCGATCAA 59.241 50.000 31.19 17.44 0.00 2.57
352 353 0.758734 TCAATCCTCGGCCGATCAAT 59.241 50.000 31.19 18.99 0.00 2.57
353 354 0.870393 CAATCCTCGGCCGATCAATG 59.130 55.000 31.19 20.92 0.00 2.82
354 355 0.469917 AATCCTCGGCCGATCAATGT 59.530 50.000 31.19 9.40 0.00 2.71
355 356 0.469917 ATCCTCGGCCGATCAATGTT 59.530 50.000 31.19 6.68 0.00 2.71
356 357 1.116308 TCCTCGGCCGATCAATGTTA 58.884 50.000 31.19 2.04 0.00 2.41
357 358 1.483004 TCCTCGGCCGATCAATGTTAA 59.517 47.619 31.19 1.15 0.00 2.01
358 359 1.867233 CCTCGGCCGATCAATGTTAAG 59.133 52.381 31.19 12.69 0.00 1.85
359 360 1.261619 CTCGGCCGATCAATGTTAAGC 59.738 52.381 31.19 0.00 0.00 3.09
360 361 1.013596 CGGCCGATCAATGTTAAGCA 58.986 50.000 24.07 0.00 0.00 3.91
361 362 1.400142 CGGCCGATCAATGTTAAGCAA 59.600 47.619 24.07 0.00 0.00 3.91
362 363 2.791158 CGGCCGATCAATGTTAAGCAAC 60.791 50.000 24.07 0.00 35.06 4.17
363 364 2.479560 GGCCGATCAATGTTAAGCAACC 60.480 50.000 0.00 0.00 33.41 3.77
364 365 2.423538 GCCGATCAATGTTAAGCAACCT 59.576 45.455 0.00 0.00 33.41 3.50
365 366 3.731867 GCCGATCAATGTTAAGCAACCTG 60.732 47.826 0.00 0.00 33.41 4.00
366 367 3.440173 CCGATCAATGTTAAGCAACCTGT 59.560 43.478 0.00 0.00 33.41 4.00
367 368 4.634004 CCGATCAATGTTAAGCAACCTGTA 59.366 41.667 0.00 0.00 33.41 2.74
368 369 5.123186 CCGATCAATGTTAAGCAACCTGTAA 59.877 40.000 0.00 0.00 33.41 2.41
369 370 6.348950 CCGATCAATGTTAAGCAACCTGTAAA 60.349 38.462 0.00 0.00 33.41 2.01
370 371 7.250569 CGATCAATGTTAAGCAACCTGTAAAT 58.749 34.615 0.00 0.00 33.41 1.40
371 372 7.429340 CGATCAATGTTAAGCAACCTGTAAATC 59.571 37.037 0.00 0.00 33.41 2.17
372 373 6.919721 TCAATGTTAAGCAACCTGTAAATCC 58.080 36.000 0.00 0.00 33.41 3.01
373 374 5.914898 ATGTTAAGCAACCTGTAAATCCC 57.085 39.130 0.00 0.00 33.41 3.85
374 375 4.083565 TGTTAAGCAACCTGTAAATCCCC 58.916 43.478 0.00 0.00 33.41 4.81
375 376 2.231716 AAGCAACCTGTAAATCCCCC 57.768 50.000 0.00 0.00 0.00 5.40
376 377 0.034477 AGCAACCTGTAAATCCCCCG 60.034 55.000 0.00 0.00 0.00 5.73
377 378 0.323087 GCAACCTGTAAATCCCCCGT 60.323 55.000 0.00 0.00 0.00 5.28
378 379 1.065272 GCAACCTGTAAATCCCCCGTA 60.065 52.381 0.00 0.00 0.00 4.02
379 380 2.618559 GCAACCTGTAAATCCCCCGTAA 60.619 50.000 0.00 0.00 0.00 3.18
380 381 3.688235 CAACCTGTAAATCCCCCGTAAA 58.312 45.455 0.00 0.00 0.00 2.01
381 382 4.080687 CAACCTGTAAATCCCCCGTAAAA 58.919 43.478 0.00 0.00 0.00 1.52
382 383 3.689347 ACCTGTAAATCCCCCGTAAAAC 58.311 45.455 0.00 0.00 0.00 2.43
383 384 3.331591 ACCTGTAAATCCCCCGTAAAACT 59.668 43.478 0.00 0.00 0.00 2.66
384 385 3.943381 CCTGTAAATCCCCCGTAAAACTC 59.057 47.826 0.00 0.00 0.00 3.01
385 386 3.943381 CTGTAAATCCCCCGTAAAACTCC 59.057 47.826 0.00 0.00 0.00 3.85
386 387 2.118313 AAATCCCCCGTAAAACTCCG 57.882 50.000 0.00 0.00 0.00 4.63
387 388 0.986527 AATCCCCCGTAAAACTCCGT 59.013 50.000 0.00 0.00 0.00 4.69
388 389 1.864669 ATCCCCCGTAAAACTCCGTA 58.135 50.000 0.00 0.00 0.00 4.02
389 390 0.894835 TCCCCCGTAAAACTCCGTAC 59.105 55.000 0.00 0.00 0.00 3.67
390 391 0.458370 CCCCCGTAAAACTCCGTACG 60.458 60.000 8.69 8.69 42.10 3.67
391 392 0.243636 CCCCGTAAAACTCCGTACGT 59.756 55.000 15.21 0.00 41.13 3.57
392 393 1.617740 CCCGTAAAACTCCGTACGTC 58.382 55.000 15.21 0.00 41.13 4.34
393 394 1.200020 CCCGTAAAACTCCGTACGTCT 59.800 52.381 15.21 0.00 41.13 4.18
394 395 2.418628 CCCGTAAAACTCCGTACGTCTA 59.581 50.000 15.21 0.00 41.13 2.59
395 396 3.485877 CCCGTAAAACTCCGTACGTCTAG 60.486 52.174 15.21 10.84 41.13 2.43
396 397 3.094294 CGTAAAACTCCGTACGTCTAGC 58.906 50.000 15.21 0.00 38.58 3.42
397 398 3.424829 CGTAAAACTCCGTACGTCTAGCA 60.425 47.826 15.21 0.00 38.58 3.49
398 399 3.863142 AAAACTCCGTACGTCTAGCAT 57.137 42.857 15.21 0.00 0.00 3.79
399 400 4.970662 AAAACTCCGTACGTCTAGCATA 57.029 40.909 15.21 0.00 0.00 3.14
400 401 4.548991 AAACTCCGTACGTCTAGCATAG 57.451 45.455 15.21 0.00 41.04 2.23
401 402 3.191078 ACTCCGTACGTCTAGCATAGT 57.809 47.619 15.21 1.85 40.38 2.12
402 403 3.129871 ACTCCGTACGTCTAGCATAGTC 58.870 50.000 15.21 0.00 40.38 2.59
403 404 2.479656 CTCCGTACGTCTAGCATAGTCC 59.520 54.545 15.21 0.00 40.38 3.85
404 405 1.534595 CCGTACGTCTAGCATAGTCCC 59.465 57.143 15.21 0.00 40.38 4.46
405 406 2.492012 CGTACGTCTAGCATAGTCCCT 58.508 52.381 7.22 0.00 40.38 4.20
406 407 2.479656 CGTACGTCTAGCATAGTCCCTC 59.520 54.545 7.22 0.00 40.38 4.30
407 408 1.595466 ACGTCTAGCATAGTCCCTCG 58.405 55.000 0.00 0.00 40.38 4.63
408 409 0.238817 CGTCTAGCATAGTCCCTCGC 59.761 60.000 0.00 0.00 40.38 5.03
409 410 1.319541 GTCTAGCATAGTCCCTCGCA 58.680 55.000 0.00 0.00 40.38 5.10
410 411 1.681793 GTCTAGCATAGTCCCTCGCAA 59.318 52.381 0.00 0.00 40.38 4.85
411 412 2.297597 GTCTAGCATAGTCCCTCGCAAT 59.702 50.000 0.00 0.00 40.38 3.56
412 413 2.297315 TCTAGCATAGTCCCTCGCAATG 59.703 50.000 0.00 0.00 40.38 2.82
413 414 0.107456 AGCATAGTCCCTCGCAATGG 59.893 55.000 0.00 0.00 0.00 3.16
414 415 1.510480 GCATAGTCCCTCGCAATGGC 61.510 60.000 0.00 0.00 0.00 4.40
415 416 0.179048 CATAGTCCCTCGCAATGGCA 60.179 55.000 0.00 0.00 41.24 4.92
416 417 0.179045 ATAGTCCCTCGCAATGGCAC 60.179 55.000 0.00 0.00 41.24 5.01
417 418 2.572095 TAGTCCCTCGCAATGGCACG 62.572 60.000 0.00 0.00 41.24 5.34
420 421 3.869272 CCTCGCAATGGCACGCTC 61.869 66.667 8.86 0.00 41.24 5.03
421 422 4.214383 CTCGCAATGGCACGCTCG 62.214 66.667 8.86 2.13 41.24 5.03
424 425 4.527157 GCAATGGCACGCTCGCTC 62.527 66.667 3.59 0.00 40.72 5.03
425 426 3.120385 CAATGGCACGCTCGCTCA 61.120 61.111 0.00 0.00 0.00 4.26
426 427 2.358615 AATGGCACGCTCGCTCAA 60.359 55.556 0.00 0.00 0.00 3.02
427 428 1.965930 AATGGCACGCTCGCTCAAA 60.966 52.632 0.00 0.00 0.00 2.69
428 429 1.514678 AATGGCACGCTCGCTCAAAA 61.515 50.000 0.00 0.00 0.00 2.44
429 430 1.308069 ATGGCACGCTCGCTCAAAAT 61.308 50.000 0.00 0.00 0.00 1.82
430 431 1.210155 GGCACGCTCGCTCAAAATT 59.790 52.632 0.00 0.00 0.00 1.82
431 432 1.067199 GGCACGCTCGCTCAAAATTG 61.067 55.000 0.00 0.00 0.00 2.32
432 433 0.385974 GCACGCTCGCTCAAAATTGT 60.386 50.000 0.00 0.00 0.00 2.71
433 434 1.595609 CACGCTCGCTCAAAATTGTC 58.404 50.000 0.00 0.00 0.00 3.18
434 435 1.069973 CACGCTCGCTCAAAATTGTCA 60.070 47.619 0.00 0.00 0.00 3.58
435 436 1.195448 ACGCTCGCTCAAAATTGTCAG 59.805 47.619 0.00 0.00 0.00 3.51
436 437 1.195448 CGCTCGCTCAAAATTGTCAGT 59.805 47.619 0.00 0.00 0.00 3.41
437 438 2.723010 CGCTCGCTCAAAATTGTCAGTC 60.723 50.000 0.00 0.00 0.00 3.51
438 439 2.413371 GCTCGCTCAAAATTGTCAGTCC 60.413 50.000 0.00 0.00 0.00 3.85
439 440 2.807967 CTCGCTCAAAATTGTCAGTCCA 59.192 45.455 0.00 0.00 0.00 4.02
440 441 2.807967 TCGCTCAAAATTGTCAGTCCAG 59.192 45.455 0.00 0.00 0.00 3.86
441 442 2.095567 CGCTCAAAATTGTCAGTCCAGG 60.096 50.000 0.00 0.00 0.00 4.45
442 443 3.149196 GCTCAAAATTGTCAGTCCAGGA 58.851 45.455 0.00 0.00 0.00 3.86
443 444 3.760684 GCTCAAAATTGTCAGTCCAGGAT 59.239 43.478 0.00 0.00 0.00 3.24
444 445 4.219288 GCTCAAAATTGTCAGTCCAGGATT 59.781 41.667 0.00 0.00 0.00 3.01
445 446 5.620879 GCTCAAAATTGTCAGTCCAGGATTC 60.621 44.000 0.00 0.00 0.00 2.52
446 447 5.634118 TCAAAATTGTCAGTCCAGGATTCT 58.366 37.500 0.00 0.00 0.00 2.40
447 448 6.778821 TCAAAATTGTCAGTCCAGGATTCTA 58.221 36.000 0.00 0.00 0.00 2.10
448 449 6.655003 TCAAAATTGTCAGTCCAGGATTCTAC 59.345 38.462 0.00 0.00 0.00 2.59
449 450 6.380079 AAATTGTCAGTCCAGGATTCTACT 57.620 37.500 0.00 0.00 0.00 2.57
450 451 7.496346 AAATTGTCAGTCCAGGATTCTACTA 57.504 36.000 0.00 0.00 0.00 1.82
451 452 5.916661 TTGTCAGTCCAGGATTCTACTAC 57.083 43.478 0.00 0.00 0.00 2.73
452 453 5.194473 TGTCAGTCCAGGATTCTACTACT 57.806 43.478 0.00 0.00 0.00 2.57
453 454 5.580998 TGTCAGTCCAGGATTCTACTACTT 58.419 41.667 0.00 0.00 0.00 2.24
454 455 5.419155 TGTCAGTCCAGGATTCTACTACTTG 59.581 44.000 0.00 0.00 0.00 3.16
455 456 4.402793 TCAGTCCAGGATTCTACTACTTGC 59.597 45.833 0.00 0.00 0.00 4.01
456 457 4.404073 CAGTCCAGGATTCTACTACTTGCT 59.596 45.833 0.00 0.00 0.00 3.91
457 458 5.026790 AGTCCAGGATTCTACTACTTGCTT 58.973 41.667 0.00 0.00 0.00 3.91
458 459 5.485708 AGTCCAGGATTCTACTACTTGCTTT 59.514 40.000 0.00 0.00 0.00 3.51
459 460 5.813157 GTCCAGGATTCTACTACTTGCTTTC 59.187 44.000 0.00 0.00 0.00 2.62
460 461 5.721960 TCCAGGATTCTACTACTTGCTTTCT 59.278 40.000 0.00 0.00 0.00 2.52
461 462 6.045955 CCAGGATTCTACTACTTGCTTTCTC 58.954 44.000 0.00 0.00 0.00 2.87
462 463 6.127196 CCAGGATTCTACTACTTGCTTTCTCT 60.127 42.308 0.00 0.00 0.00 3.10
463 464 6.756074 CAGGATTCTACTACTTGCTTTCTCTG 59.244 42.308 0.00 0.00 0.00 3.35
464 465 6.439058 AGGATTCTACTACTTGCTTTCTCTGT 59.561 38.462 0.00 0.00 0.00 3.41
465 466 6.754675 GGATTCTACTACTTGCTTTCTCTGTC 59.245 42.308 0.00 0.00 0.00 3.51
466 467 5.646577 TCTACTACTTGCTTTCTCTGTCC 57.353 43.478 0.00 0.00 0.00 4.02
467 468 5.077564 TCTACTACTTGCTTTCTCTGTCCA 58.922 41.667 0.00 0.00 0.00 4.02
468 469 4.899352 ACTACTTGCTTTCTCTGTCCAT 57.101 40.909 0.00 0.00 0.00 3.41
469 470 5.234466 ACTACTTGCTTTCTCTGTCCATT 57.766 39.130 0.00 0.00 0.00 3.16
470 471 6.360370 ACTACTTGCTTTCTCTGTCCATTA 57.640 37.500 0.00 0.00 0.00 1.90
471 472 6.402222 ACTACTTGCTTTCTCTGTCCATTAG 58.598 40.000 0.00 0.00 0.00 1.73
472 473 5.234466 ACTTGCTTTCTCTGTCCATTAGT 57.766 39.130 0.00 0.00 0.00 2.24
473 474 6.360370 ACTTGCTTTCTCTGTCCATTAGTA 57.640 37.500 0.00 0.00 0.00 1.82
474 475 6.951971 ACTTGCTTTCTCTGTCCATTAGTAT 58.048 36.000 0.00 0.00 0.00 2.12
475 476 7.044798 ACTTGCTTTCTCTGTCCATTAGTATC 58.955 38.462 0.00 0.00 0.00 2.24
476 477 6.544928 TGCTTTCTCTGTCCATTAGTATCA 57.455 37.500 0.00 0.00 0.00 2.15
483 484 7.851228 TCTCTGTCCATTAGTATCATGTGTTT 58.149 34.615 0.00 0.00 0.00 2.83
606 610 7.435488 CGTCAATGATTCTTACCGTCTTTCTAT 59.565 37.037 0.00 0.00 0.00 1.98
610 614 2.805845 TCTTACCGTCTTTCTATGCGC 58.194 47.619 0.00 0.00 0.00 6.09
628 632 2.419297 GCGCTCCTGGATTATCCTATGG 60.419 54.545 12.91 11.52 37.46 2.74
672 676 1.781555 CTTGACCGCAAGTGCTACG 59.218 57.895 1.21 0.00 45.10 3.51
692 696 2.180017 GCAAAGACTGGCATGGCG 59.820 61.111 15.27 11.73 0.00 5.69
755 759 3.118629 TCTCGCAGTAGCATTGGAATCTT 60.119 43.478 0.00 0.00 42.27 2.40
756 760 3.609853 TCGCAGTAGCATTGGAATCTTT 58.390 40.909 0.00 0.00 42.27 2.52
787 791 2.069273 CGAGGCCAGTCAAGTAACTTG 58.931 52.381 5.01 0.00 42.25 3.16
848 852 5.360714 CACCATTGCCTTTGTCCATATAAGT 59.639 40.000 0.00 0.00 0.00 2.24
852 856 7.502226 CCATTGCCTTTGTCCATATAAGTCTAA 59.498 37.037 0.00 0.00 0.00 2.10
856 864 7.065324 TGCCTTTGTCCATATAAGTCTAAAACG 59.935 37.037 0.00 0.00 0.00 3.60
858 866 7.280205 CCTTTGTCCATATAAGTCTAAAACGCT 59.720 37.037 0.00 0.00 0.00 5.07
884 892 1.798079 GCTCGCCTCCTTACTGTTACG 60.798 57.143 0.00 0.00 0.00 3.18
915 923 4.958581 TGATCTTCTCCTGCTCTTGATACA 59.041 41.667 0.00 0.00 0.00 2.29
964 985 0.609131 GCCTGCCTAAGCTTTGTCCA 60.609 55.000 3.20 1.31 40.80 4.02
1002 1027 7.647715 CCTGTTTCAAACTTTACACTAACCATG 59.352 37.037 1.10 0.00 0.00 3.66
1012 1037 2.299013 ACACTAACCATGCTCTGTTCGA 59.701 45.455 0.00 0.00 0.00 3.71
1167 1206 4.436998 CCGTCCCACTGCGTCTCC 62.437 72.222 0.00 0.00 0.00 3.71
1211 1250 2.098280 ACACAGAGGTCAGAATCGATCG 59.902 50.000 9.36 9.36 0.00 3.69
1234 1276 2.811431 CTCCTCCTACTATCTGTCTGCG 59.189 54.545 0.00 0.00 0.00 5.18
1565 1616 0.534652 GCCATCTCCACAGGATGCTC 60.535 60.000 0.00 0.00 42.53 4.26
1616 1667 2.511600 GATGCAACCGACGGAGGG 60.512 66.667 23.38 10.29 35.02 4.30
1675 1729 5.406767 TTTGCATGTTGTTGCTCATTTTC 57.593 34.783 0.00 0.00 43.18 2.29
1721 1778 6.757026 TTTTTCAAATACGCAAAGCTTACC 57.243 33.333 0.00 0.00 0.00 2.85
1729 1786 7.568199 AATACGCAAAGCTTACCTATCATTT 57.432 32.000 0.00 0.00 0.00 2.32
1732 1789 7.568199 ACGCAAAGCTTACCTATCATTTATT 57.432 32.000 0.00 0.00 0.00 1.40
1733 1790 7.417612 ACGCAAAGCTTACCTATCATTTATTG 58.582 34.615 0.00 0.00 0.00 1.90
1758 1815 3.391296 AGGTAGAAGCAAACAGAGTTCCA 59.609 43.478 0.00 0.00 0.00 3.53
1759 1816 3.748568 GGTAGAAGCAAACAGAGTTCCAG 59.251 47.826 0.00 0.00 0.00 3.86
1760 1817 2.856222 AGAAGCAAACAGAGTTCCAGG 58.144 47.619 0.00 0.00 0.00 4.45
1776 1833 2.504175 TCCAGGCATTACACTTAGGGAC 59.496 50.000 0.00 0.00 0.00 4.46
1823 1880 4.849310 GCGGCGGCCATTGTCCTA 62.849 66.667 20.71 0.00 0.00 2.94
1828 1885 1.103398 GCGGCCATTGTCCTATTGCT 61.103 55.000 2.24 0.00 0.00 3.91
1839 1896 1.105759 CCTATTGCTTGGCCCAGAGC 61.106 60.000 8.31 11.78 42.60 4.09
1885 1942 1.153289 GGGCGTCTGTGATCTGCAT 60.153 57.895 0.00 0.00 0.00 3.96
2011 2068 1.010462 GTTTCACGCGTCCACAACC 60.010 57.895 9.86 0.00 0.00 3.77
2022 2079 2.350895 CACAACCTGGGCCATCGA 59.649 61.111 6.72 0.00 0.00 3.59
2073 2130 1.762957 CCACTGGATCAACGGTAGGAT 59.237 52.381 0.00 0.00 0.00 3.24
2179 2237 1.024579 GGTGTGGGTACAAGGCATCG 61.025 60.000 0.00 0.00 38.82 3.84
2233 2291 1.513160 GTCGAGCTCTGACGTCAGC 60.513 63.158 35.48 27.20 43.46 4.26
2399 2457 1.826024 CACCTCTCCGGATGAAGGG 59.174 63.158 24.03 15.81 36.31 3.95
2417 2475 2.817396 GTTCCTCTGGCTCGCTGC 60.817 66.667 0.00 0.00 41.94 5.25
2437 2495 3.573772 CTTGACCGCTGCTGGACGA 62.574 63.158 15.53 9.28 0.00 4.20
2466 2524 4.681978 GCGCGTCACAACCTCCCT 62.682 66.667 8.43 0.00 0.00 4.20
2478 2536 2.166907 ACCTCCCTCACGATGATTCT 57.833 50.000 0.00 0.00 0.00 2.40
2505 2563 1.264288 GCTTTGTGACCAAGAGTTCGG 59.736 52.381 0.02 0.00 0.00 4.30
2506 2564 1.264288 CTTTGTGACCAAGAGTTCGGC 59.736 52.381 0.00 0.00 0.00 5.54
2583 2641 4.767255 CTCCTGGTGTCGGCTGCC 62.767 72.222 9.11 9.11 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.193826 TCTTAAGATGATATGCCGGCTC 57.806 45.455 29.70 17.89 0.00 4.70
2 3 4.833478 ATCTTAAGATGATATGCCGGCT 57.167 40.909 29.70 15.76 32.68 5.52
3 4 5.886960 AAATCTTAAGATGATATGCCGGC 57.113 39.130 22.73 22.73 34.49 6.13
4 5 6.811665 TCGTAAATCTTAAGATGATATGCCGG 59.188 38.462 18.61 0.00 34.49 6.13
5 6 7.812309 TCGTAAATCTTAAGATGATATGCCG 57.188 36.000 18.61 13.49 34.49 5.69
6 7 9.424319 TCTTCGTAAATCTTAAGATGATATGCC 57.576 33.333 18.61 3.91 34.49 4.40
26 27 8.070171 CGCATTATTCTTGGATTTATTCTTCGT 58.930 33.333 0.00 0.00 0.00 3.85
27 28 8.282592 TCGCATTATTCTTGGATTTATTCTTCG 58.717 33.333 0.00 0.00 0.00 3.79
28 29 9.604626 CTCGCATTATTCTTGGATTTATTCTTC 57.395 33.333 0.00 0.00 0.00 2.87
29 30 8.078596 GCTCGCATTATTCTTGGATTTATTCTT 58.921 33.333 0.00 0.00 0.00 2.52
30 31 7.229306 TGCTCGCATTATTCTTGGATTTATTCT 59.771 33.333 0.00 0.00 0.00 2.40
31 32 7.324616 GTGCTCGCATTATTCTTGGATTTATTC 59.675 37.037 0.00 0.00 0.00 1.75
32 33 7.141363 GTGCTCGCATTATTCTTGGATTTATT 58.859 34.615 0.00 0.00 0.00 1.40
33 34 6.294176 GGTGCTCGCATTATTCTTGGATTTAT 60.294 38.462 0.00 0.00 0.00 1.40
34 35 5.008613 GGTGCTCGCATTATTCTTGGATTTA 59.991 40.000 0.00 0.00 0.00 1.40
35 36 4.202050 GGTGCTCGCATTATTCTTGGATTT 60.202 41.667 0.00 0.00 0.00 2.17
36 37 3.316308 GGTGCTCGCATTATTCTTGGATT 59.684 43.478 0.00 0.00 0.00 3.01
37 38 2.880890 GGTGCTCGCATTATTCTTGGAT 59.119 45.455 0.00 0.00 0.00 3.41
38 39 2.288666 GGTGCTCGCATTATTCTTGGA 58.711 47.619 0.00 0.00 0.00 3.53
39 40 2.016318 TGGTGCTCGCATTATTCTTGG 58.984 47.619 0.00 0.00 0.00 3.61
40 41 2.032550 CCTGGTGCTCGCATTATTCTTG 59.967 50.000 0.00 0.00 0.00 3.02
41 42 2.092968 TCCTGGTGCTCGCATTATTCTT 60.093 45.455 0.00 0.00 0.00 2.52
42 43 1.486310 TCCTGGTGCTCGCATTATTCT 59.514 47.619 0.00 0.00 0.00 2.40
43 44 1.599542 GTCCTGGTGCTCGCATTATTC 59.400 52.381 0.00 0.00 0.00 1.75
44 45 1.210478 AGTCCTGGTGCTCGCATTATT 59.790 47.619 0.00 0.00 0.00 1.40
45 46 0.833287 AGTCCTGGTGCTCGCATTAT 59.167 50.000 0.00 0.00 0.00 1.28
46 47 0.613260 AAGTCCTGGTGCTCGCATTA 59.387 50.000 0.00 0.00 0.00 1.90
47 48 0.957395 CAAGTCCTGGTGCTCGCATT 60.957 55.000 0.00 0.00 0.00 3.56
48 49 1.376424 CAAGTCCTGGTGCTCGCAT 60.376 57.895 0.00 0.00 0.00 4.73
49 50 2.031012 CAAGTCCTGGTGCTCGCA 59.969 61.111 0.00 0.00 0.00 5.10
50 51 1.301716 TTCAAGTCCTGGTGCTCGC 60.302 57.895 0.00 0.00 0.00 5.03
51 52 0.951040 GGTTCAAGTCCTGGTGCTCG 60.951 60.000 0.00 0.00 0.00 5.03
52 53 0.398318 AGGTTCAAGTCCTGGTGCTC 59.602 55.000 0.00 0.00 33.62 4.26
53 54 0.109342 CAGGTTCAAGTCCTGGTGCT 59.891 55.000 4.27 0.00 46.03 4.40
54 55 2.633860 CAGGTTCAAGTCCTGGTGC 58.366 57.895 4.27 0.00 46.03 5.01
59 60 2.155065 CCCACCAGGTTCAAGTCCT 58.845 57.895 0.00 0.00 35.45 3.85
60 61 4.821935 CCCACCAGGTTCAAGTCC 57.178 61.111 0.00 0.00 0.00 3.85
69 70 0.546598 GGTATCCTCAACCCACCAGG 59.453 60.000 0.00 0.00 43.78 4.45
70 71 1.065418 GTGGTATCCTCAACCCACCAG 60.065 57.143 0.00 0.00 41.20 4.00
71 72 0.988832 GTGGTATCCTCAACCCACCA 59.011 55.000 0.00 0.00 41.20 4.17
72 73 1.065418 CAGTGGTATCCTCAACCCACC 60.065 57.143 4.15 0.00 46.84 4.61
73 74 1.628846 ACAGTGGTATCCTCAACCCAC 59.371 52.381 0.00 0.00 46.17 4.61
74 75 1.906574 GACAGTGGTATCCTCAACCCA 59.093 52.381 0.00 0.00 36.06 4.51
75 76 2.168728 GAGACAGTGGTATCCTCAACCC 59.831 54.545 0.00 0.00 36.06 4.11
76 77 3.100671 AGAGACAGTGGTATCCTCAACC 58.899 50.000 0.00 0.00 35.87 3.77
77 78 4.810191 AAGAGACAGTGGTATCCTCAAC 57.190 45.455 0.00 0.00 35.87 3.18
78 79 6.295688 GGTTAAAGAGACAGTGGTATCCTCAA 60.296 42.308 0.00 0.00 35.87 3.02
79 80 5.187186 GGTTAAAGAGACAGTGGTATCCTCA 59.813 44.000 0.00 0.00 35.87 3.86
80 81 5.187186 TGGTTAAAGAGACAGTGGTATCCTC 59.813 44.000 0.00 0.00 35.87 3.71
81 82 5.091552 TGGTTAAAGAGACAGTGGTATCCT 58.908 41.667 0.00 0.00 35.87 3.24
82 83 5.416271 TGGTTAAAGAGACAGTGGTATCC 57.584 43.478 0.00 0.00 35.87 2.59
83 84 6.049790 GGATGGTTAAAGAGACAGTGGTATC 58.950 44.000 0.00 0.00 35.48 2.24
84 85 5.487488 TGGATGGTTAAAGAGACAGTGGTAT 59.513 40.000 0.00 0.00 0.00 2.73
85 86 4.841813 TGGATGGTTAAAGAGACAGTGGTA 59.158 41.667 0.00 0.00 0.00 3.25
86 87 3.650942 TGGATGGTTAAAGAGACAGTGGT 59.349 43.478 0.00 0.00 0.00 4.16
87 88 4.286297 TGGATGGTTAAAGAGACAGTGG 57.714 45.455 0.00 0.00 0.00 4.00
88 89 4.455877 GGTTGGATGGTTAAAGAGACAGTG 59.544 45.833 0.00 0.00 0.00 3.66
89 90 4.104102 TGGTTGGATGGTTAAAGAGACAGT 59.896 41.667 0.00 0.00 0.00 3.55
90 91 4.651778 TGGTTGGATGGTTAAAGAGACAG 58.348 43.478 0.00 0.00 0.00 3.51
91 92 4.715534 TGGTTGGATGGTTAAAGAGACA 57.284 40.909 0.00 0.00 0.00 3.41
92 93 6.884836 ACTTATGGTTGGATGGTTAAAGAGAC 59.115 38.462 0.00 0.00 0.00 3.36
93 94 7.027874 ACTTATGGTTGGATGGTTAAAGAGA 57.972 36.000 0.00 0.00 0.00 3.10
94 95 7.703058 AACTTATGGTTGGATGGTTAAAGAG 57.297 36.000 0.00 0.00 36.70 2.85
108 109 1.399215 CGCGCGAAACAACTTATGGTT 60.399 47.619 28.94 0.00 43.24 3.67
109 110 0.165079 CGCGCGAAACAACTTATGGT 59.835 50.000 28.94 0.00 0.00 3.55
110 111 0.440758 TCGCGCGAAACAACTTATGG 59.559 50.000 32.97 0.00 0.00 2.74
111 112 1.388768 TCTCGCGCGAAACAACTTATG 59.611 47.619 33.99 17.48 0.00 1.90
112 113 1.389106 GTCTCGCGCGAAACAACTTAT 59.611 47.619 33.99 0.00 0.00 1.73
113 114 0.780002 GTCTCGCGCGAAACAACTTA 59.220 50.000 33.99 8.02 0.00 2.24
114 115 1.149361 TGTCTCGCGCGAAACAACTT 61.149 50.000 34.34 0.00 0.00 2.66
115 116 1.149361 TTGTCTCGCGCGAAACAACT 61.149 50.000 39.09 0.00 0.00 3.16
116 117 0.985416 GTTGTCTCGCGCGAAACAAC 60.985 55.000 46.04 46.04 43.07 3.32
117 118 1.149361 AGTTGTCTCGCGCGAAACAA 61.149 50.000 39.09 39.09 0.00 2.83
118 119 1.149361 AAGTTGTCTCGCGCGAAACA 61.149 50.000 33.06 33.06 0.00 2.83
119 120 0.718220 CAAGTTGTCTCGCGCGAAAC 60.718 55.000 33.99 31.09 0.00 2.78
120 121 1.149361 ACAAGTTGTCTCGCGCGAAA 61.149 50.000 33.99 22.28 0.00 3.46
121 122 1.149361 AACAAGTTGTCTCGCGCGAA 61.149 50.000 33.99 20.97 0.00 4.70
122 123 1.590525 AACAAGTTGTCTCGCGCGA 60.591 52.632 32.60 32.60 0.00 5.87
123 124 1.437089 CAACAAGTTGTCTCGCGCG 60.437 57.895 26.76 26.76 35.92 6.86
124 125 1.082756 CCAACAAGTTGTCTCGCGC 60.083 57.895 9.40 0.00 38.85 6.86
125 126 1.157870 ACCCAACAAGTTGTCTCGCG 61.158 55.000 9.40 0.00 38.85 5.87
126 127 0.307760 CACCCAACAAGTTGTCTCGC 59.692 55.000 9.40 0.00 38.85 5.03
127 128 1.330521 CACACCCAACAAGTTGTCTCG 59.669 52.381 9.40 1.96 38.85 4.04
128 129 1.676006 CCACACCCAACAAGTTGTCTC 59.324 52.381 9.40 0.00 38.85 3.36
129 130 1.283613 TCCACACCCAACAAGTTGTCT 59.716 47.619 9.40 0.00 38.85 3.41
130 131 1.757682 TCCACACCCAACAAGTTGTC 58.242 50.000 9.40 0.00 38.85 3.18
131 132 2.452600 ATCCACACCCAACAAGTTGT 57.547 45.000 1.64 1.64 38.85 3.32
132 133 5.467035 AATTATCCACACCCAACAAGTTG 57.533 39.130 0.00 0.00 40.13 3.16
133 134 5.182380 CGTAATTATCCACACCCAACAAGTT 59.818 40.000 0.00 0.00 0.00 2.66
134 135 4.698304 CGTAATTATCCACACCCAACAAGT 59.302 41.667 0.00 0.00 0.00 3.16
135 136 4.095782 CCGTAATTATCCACACCCAACAAG 59.904 45.833 0.00 0.00 0.00 3.16
136 137 4.011023 CCGTAATTATCCACACCCAACAA 58.989 43.478 0.00 0.00 0.00 2.83
137 138 3.611970 CCGTAATTATCCACACCCAACA 58.388 45.455 0.00 0.00 0.00 3.33
138 139 2.946990 CCCGTAATTATCCACACCCAAC 59.053 50.000 0.00 0.00 0.00 3.77
139 140 2.092321 CCCCGTAATTATCCACACCCAA 60.092 50.000 0.00 0.00 0.00 4.12
140 141 1.491332 CCCCGTAATTATCCACACCCA 59.509 52.381 0.00 0.00 0.00 4.51
141 142 1.816572 GCCCCGTAATTATCCACACCC 60.817 57.143 0.00 0.00 0.00 4.61
142 143 1.601166 GCCCCGTAATTATCCACACC 58.399 55.000 0.00 0.00 0.00 4.16
143 144 1.202557 TCGCCCCGTAATTATCCACAC 60.203 52.381 0.00 0.00 0.00 3.82
144 145 1.069513 CTCGCCCCGTAATTATCCACA 59.930 52.381 0.00 0.00 0.00 4.17
145 146 1.792006 CTCGCCCCGTAATTATCCAC 58.208 55.000 0.00 0.00 0.00 4.02
146 147 0.034337 GCTCGCCCCGTAATTATCCA 59.966 55.000 0.00 0.00 0.00 3.41
147 148 1.012486 CGCTCGCCCCGTAATTATCC 61.012 60.000 0.00 0.00 0.00 2.59
148 149 1.623973 GCGCTCGCCCCGTAATTATC 61.624 60.000 0.00 0.00 34.56 1.75
149 150 1.666872 GCGCTCGCCCCGTAATTAT 60.667 57.895 0.00 0.00 34.56 1.28
150 151 1.454572 TAGCGCTCGCCCCGTAATTA 61.455 55.000 16.34 0.00 43.17 1.40
151 152 2.095978 ATAGCGCTCGCCCCGTAATT 62.096 55.000 16.34 0.00 43.17 1.40
152 153 2.571216 ATAGCGCTCGCCCCGTAAT 61.571 57.895 16.34 0.00 43.17 1.89
153 154 3.221389 ATAGCGCTCGCCCCGTAA 61.221 61.111 16.34 0.00 43.17 3.18
154 155 3.973516 CATAGCGCTCGCCCCGTA 61.974 66.667 16.34 0.00 43.17 4.02
157 158 4.971125 GGACATAGCGCTCGCCCC 62.971 72.222 16.34 8.25 43.17 5.80
159 160 4.570663 ACGGACATAGCGCTCGCC 62.571 66.667 16.34 10.58 43.17 5.54
160 161 3.025176 GACGGACATAGCGCTCGC 61.025 66.667 16.34 6.09 42.33 5.03
161 162 1.369448 GAGACGGACATAGCGCTCG 60.369 63.158 16.34 14.38 0.00 5.03
162 163 1.369448 CGAGACGGACATAGCGCTC 60.369 63.158 16.34 0.00 0.00 5.03
163 164 0.812811 TACGAGACGGACATAGCGCT 60.813 55.000 17.26 17.26 0.00 5.92
164 165 0.656786 GTACGAGACGGACATAGCGC 60.657 60.000 0.00 0.00 40.85 5.92
165 166 0.935898 AGTACGAGACGGACATAGCG 59.064 55.000 9.14 0.00 44.03 4.26
166 167 2.211806 AGAGTACGAGACGGACATAGC 58.788 52.381 9.14 0.00 44.03 2.97
167 168 2.472115 CGAGAGTACGAGACGGACATAG 59.528 54.545 9.14 0.00 44.03 2.23
168 169 2.159184 ACGAGAGTACGAGACGGACATA 60.159 50.000 9.14 0.00 44.03 2.29
169 170 1.288350 CGAGAGTACGAGACGGACAT 58.712 55.000 9.14 0.00 44.03 3.06
170 171 0.037882 ACGAGAGTACGAGACGGACA 60.038 55.000 9.14 0.00 44.03 4.02
171 172 2.748268 ACGAGAGTACGAGACGGAC 58.252 57.895 0.00 0.00 46.88 4.79
183 184 0.099082 GTGGGAGCGTCTAACGAGAG 59.901 60.000 3.28 0.00 46.05 3.20
184 185 0.322277 AGTGGGAGCGTCTAACGAGA 60.322 55.000 3.28 0.00 46.05 4.04
185 186 0.099082 GAGTGGGAGCGTCTAACGAG 59.901 60.000 3.28 0.00 46.05 4.18
186 187 1.310933 GGAGTGGGAGCGTCTAACGA 61.311 60.000 3.28 0.00 46.05 3.85
187 188 1.139095 GGAGTGGGAGCGTCTAACG 59.861 63.158 0.00 0.00 45.88 3.18
188 189 1.516423 GGGAGTGGGAGCGTCTAAC 59.484 63.158 0.00 0.00 0.00 2.34
189 190 1.684734 GGGGAGTGGGAGCGTCTAA 60.685 63.158 0.00 0.00 0.00 2.10
190 191 2.043248 GGGGAGTGGGAGCGTCTA 60.043 66.667 0.00 0.00 0.00 2.59
206 207 4.680237 TTGCGAGCACTCCACCGG 62.680 66.667 0.00 0.00 0.00 5.28
207 208 3.414700 GTTGCGAGCACTCCACCG 61.415 66.667 0.00 0.00 0.00 4.94
208 209 3.414700 CGTTGCGAGCACTCCACC 61.415 66.667 0.00 0.00 0.00 4.61
209 210 4.077188 GCGTTGCGAGCACTCCAC 62.077 66.667 0.00 0.00 34.19 4.02
210 211 3.952886 TATTGCGTTGCGAGCACTCCA 62.953 52.381 0.00 0.00 45.10 3.86
211 212 1.358725 TATTGCGTTGCGAGCACTCC 61.359 55.000 0.00 0.00 45.10 3.85
212 213 0.442310 TTATTGCGTTGCGAGCACTC 59.558 50.000 0.00 0.00 45.10 3.51
213 214 1.086696 ATTATTGCGTTGCGAGCACT 58.913 45.000 0.00 0.00 45.10 4.40
214 215 1.182673 CATTATTGCGTTGCGAGCAC 58.817 50.000 0.00 0.00 45.10 4.40
215 216 0.523125 GCATTATTGCGTTGCGAGCA 60.523 50.000 0.00 0.00 43.59 4.26
216 217 2.198266 GCATTATTGCGTTGCGAGC 58.802 52.632 0.00 0.00 39.49 5.03
226 227 5.197549 GTGCATGTACGTGTAGCATTATTG 58.802 41.667 16.28 0.00 37.56 1.90
227 228 4.873259 TGTGCATGTACGTGTAGCATTATT 59.127 37.500 16.28 0.00 37.56 1.40
228 229 4.438148 TGTGCATGTACGTGTAGCATTAT 58.562 39.130 16.28 0.00 37.56 1.28
229 230 3.851098 TGTGCATGTACGTGTAGCATTA 58.149 40.909 16.28 0.44 37.56 1.90
230 231 2.694213 TGTGCATGTACGTGTAGCATT 58.306 42.857 16.28 0.00 37.56 3.56
231 232 2.378445 TGTGCATGTACGTGTAGCAT 57.622 45.000 16.28 0.00 37.56 3.79
232 233 2.378445 ATGTGCATGTACGTGTAGCA 57.622 45.000 16.28 12.37 0.00 3.49
233 234 2.930040 AGAATGTGCATGTACGTGTAGC 59.070 45.455 16.28 3.06 0.00 3.58
234 235 5.099575 TGTAGAATGTGCATGTACGTGTAG 58.900 41.667 16.28 0.00 0.00 2.74
235 236 5.061920 TGTAGAATGTGCATGTACGTGTA 57.938 39.130 16.28 9.39 0.00 2.90
236 237 3.920446 TGTAGAATGTGCATGTACGTGT 58.080 40.909 16.28 3.28 0.00 4.49
237 238 4.173256 TCTGTAGAATGTGCATGTACGTG 58.827 43.478 9.57 10.89 0.00 4.49
238 239 4.450082 TCTGTAGAATGTGCATGTACGT 57.550 40.909 9.48 6.11 0.00 3.57
239 240 5.973651 AATCTGTAGAATGTGCATGTACG 57.026 39.130 9.48 0.00 0.00 3.67
240 241 9.490663 GTAAAAATCTGTAGAATGTGCATGTAC 57.509 33.333 7.03 7.03 0.00 2.90
241 242 9.225436 TGTAAAAATCTGTAGAATGTGCATGTA 57.775 29.630 0.00 0.00 0.00 2.29
242 243 8.109705 TGTAAAAATCTGTAGAATGTGCATGT 57.890 30.769 0.00 0.00 0.00 3.21
243 244 7.699391 CCTGTAAAAATCTGTAGAATGTGCATG 59.301 37.037 0.00 0.00 0.00 4.06
244 245 7.394359 ACCTGTAAAAATCTGTAGAATGTGCAT 59.606 33.333 0.00 0.00 0.00 3.96
245 246 6.714810 ACCTGTAAAAATCTGTAGAATGTGCA 59.285 34.615 0.00 0.00 0.00 4.57
246 247 7.145932 ACCTGTAAAAATCTGTAGAATGTGC 57.854 36.000 0.00 0.00 0.00 4.57
247 248 8.783093 TCAACCTGTAAAAATCTGTAGAATGTG 58.217 33.333 0.00 0.00 0.00 3.21
248 249 8.918202 TCAACCTGTAAAAATCTGTAGAATGT 57.082 30.769 0.00 0.00 0.00 2.71
249 250 8.454106 CCTCAACCTGTAAAAATCTGTAGAATG 58.546 37.037 0.00 0.00 0.00 2.67
250 251 8.383175 TCCTCAACCTGTAAAAATCTGTAGAAT 58.617 33.333 0.00 0.00 0.00 2.40
251 252 7.660208 GTCCTCAACCTGTAAAAATCTGTAGAA 59.340 37.037 0.00 0.00 0.00 2.10
252 253 7.016268 AGTCCTCAACCTGTAAAAATCTGTAGA 59.984 37.037 0.00 0.00 0.00 2.59
253 254 7.162082 AGTCCTCAACCTGTAAAAATCTGTAG 58.838 38.462 0.00 0.00 0.00 2.74
254 255 7.074653 AGTCCTCAACCTGTAAAAATCTGTA 57.925 36.000 0.00 0.00 0.00 2.74
255 256 5.941788 AGTCCTCAACCTGTAAAAATCTGT 58.058 37.500 0.00 0.00 0.00 3.41
256 257 7.414540 GCATAGTCCTCAACCTGTAAAAATCTG 60.415 40.741 0.00 0.00 0.00 2.90
257 258 6.599638 GCATAGTCCTCAACCTGTAAAAATCT 59.400 38.462 0.00 0.00 0.00 2.40
258 259 6.456988 CGCATAGTCCTCAACCTGTAAAAATC 60.457 42.308 0.00 0.00 0.00 2.17
259 260 5.354234 CGCATAGTCCTCAACCTGTAAAAAT 59.646 40.000 0.00 0.00 0.00 1.82
260 261 4.693566 CGCATAGTCCTCAACCTGTAAAAA 59.306 41.667 0.00 0.00 0.00 1.94
261 262 4.250464 CGCATAGTCCTCAACCTGTAAAA 58.750 43.478 0.00 0.00 0.00 1.52
262 263 3.857052 CGCATAGTCCTCAACCTGTAAA 58.143 45.455 0.00 0.00 0.00 2.01
263 264 2.418197 GCGCATAGTCCTCAACCTGTAA 60.418 50.000 0.30 0.00 0.00 2.41
264 265 1.136305 GCGCATAGTCCTCAACCTGTA 59.864 52.381 0.30 0.00 0.00 2.74
265 266 0.108138 GCGCATAGTCCTCAACCTGT 60.108 55.000 0.30 0.00 0.00 4.00
266 267 0.176680 AGCGCATAGTCCTCAACCTG 59.823 55.000 11.47 0.00 0.00 4.00
267 268 0.461961 GAGCGCATAGTCCTCAACCT 59.538 55.000 11.47 0.00 0.00 3.50
268 269 0.461961 AGAGCGCATAGTCCTCAACC 59.538 55.000 11.47 0.00 0.00 3.77
269 270 2.159170 AGAAGAGCGCATAGTCCTCAAC 60.159 50.000 11.47 0.00 0.00 3.18
270 271 2.103373 AGAAGAGCGCATAGTCCTCAA 58.897 47.619 11.47 0.00 0.00 3.02
271 272 1.769026 AGAAGAGCGCATAGTCCTCA 58.231 50.000 11.47 0.00 0.00 3.86
272 273 3.992260 TTAGAAGAGCGCATAGTCCTC 57.008 47.619 11.47 0.00 0.00 3.71
273 274 4.626042 CAATTAGAAGAGCGCATAGTCCT 58.374 43.478 11.47 0.94 0.00 3.85
274 275 3.185391 GCAATTAGAAGAGCGCATAGTCC 59.815 47.826 11.47 0.00 0.00 3.85
275 276 3.185391 GGCAATTAGAAGAGCGCATAGTC 59.815 47.826 11.47 0.00 0.00 2.59
276 277 3.134458 GGCAATTAGAAGAGCGCATAGT 58.866 45.455 11.47 0.00 0.00 2.12
277 278 2.481952 GGGCAATTAGAAGAGCGCATAG 59.518 50.000 11.47 0.00 39.41 2.23
278 279 2.494059 GGGCAATTAGAAGAGCGCATA 58.506 47.619 11.47 0.00 39.41 3.14
279 280 1.312815 GGGCAATTAGAAGAGCGCAT 58.687 50.000 11.47 0.00 39.41 4.73
280 281 0.748005 GGGGCAATTAGAAGAGCGCA 60.748 55.000 11.47 0.00 41.11 6.09
281 282 1.448119 GGGGGCAATTAGAAGAGCGC 61.448 60.000 0.00 0.00 38.96 5.92
282 283 2.707902 GGGGGCAATTAGAAGAGCG 58.292 57.895 0.00 0.00 0.00 5.03
298 299 1.226262 CACCGGTGGAAATAGGGGG 59.774 63.158 27.57 0.00 0.00 5.40
299 300 4.977393 CACCGGTGGAAATAGGGG 57.023 61.111 27.57 0.00 0.00 4.79
314 315 3.887335 TTAAGACGCACGGGCCCAC 62.887 63.158 24.92 9.74 36.38 4.61
315 316 2.862674 GATTAAGACGCACGGGCCCA 62.863 60.000 24.92 0.00 36.38 5.36
316 317 2.124860 ATTAAGACGCACGGGCCC 60.125 61.111 13.57 13.57 36.38 5.80
317 318 1.022451 TTGATTAAGACGCACGGGCC 61.022 55.000 2.82 0.00 36.38 5.80
318 319 1.003866 GATTGATTAAGACGCACGGGC 60.004 52.381 0.00 0.00 0.00 6.13
319 320 1.597663 GGATTGATTAAGACGCACGGG 59.402 52.381 0.00 0.00 0.00 5.28
320 321 2.540101 GAGGATTGATTAAGACGCACGG 59.460 50.000 0.00 0.00 0.00 4.94
321 322 2.216488 CGAGGATTGATTAAGACGCACG 59.784 50.000 0.00 0.00 0.00 5.34
322 323 2.540101 CCGAGGATTGATTAAGACGCAC 59.460 50.000 0.00 0.00 0.00 5.34
323 324 2.821546 CCGAGGATTGATTAAGACGCA 58.178 47.619 0.00 0.00 0.00 5.24
324 325 1.527311 GCCGAGGATTGATTAAGACGC 59.473 52.381 0.00 0.00 0.00 5.19
325 326 2.135933 GGCCGAGGATTGATTAAGACG 58.864 52.381 0.00 0.00 0.00 4.18
326 327 2.135933 CGGCCGAGGATTGATTAAGAC 58.864 52.381 24.07 0.00 0.00 3.01
327 328 2.036387 TCGGCCGAGGATTGATTAAGA 58.964 47.619 27.28 0.00 0.00 2.10
328 329 2.526304 TCGGCCGAGGATTGATTAAG 57.474 50.000 27.28 0.00 0.00 1.85
329 330 2.367241 TGATCGGCCGAGGATTGATTAA 59.633 45.455 33.87 3.69 0.00 1.40
330 331 1.967779 TGATCGGCCGAGGATTGATTA 59.032 47.619 33.87 8.62 0.00 1.75
331 332 0.758734 TGATCGGCCGAGGATTGATT 59.241 50.000 33.87 14.26 0.00 2.57
332 333 0.758734 TTGATCGGCCGAGGATTGAT 59.241 50.000 33.87 15.12 0.00 2.57
333 334 0.758734 ATTGATCGGCCGAGGATTGA 59.241 50.000 33.87 15.56 0.00 2.57
334 335 0.870393 CATTGATCGGCCGAGGATTG 59.130 55.000 33.87 22.61 0.00 2.67
335 336 0.469917 ACATTGATCGGCCGAGGATT 59.530 50.000 33.87 17.28 0.00 3.01
336 337 0.469917 AACATTGATCGGCCGAGGAT 59.530 50.000 33.87 22.32 0.00 3.24
337 338 1.116308 TAACATTGATCGGCCGAGGA 58.884 50.000 33.87 21.05 0.00 3.71
338 339 1.867233 CTTAACATTGATCGGCCGAGG 59.133 52.381 33.87 20.69 0.00 4.63
339 340 1.261619 GCTTAACATTGATCGGCCGAG 59.738 52.381 33.87 21.34 0.00 4.63
340 341 1.295792 GCTTAACATTGATCGGCCGA 58.704 50.000 33.12 33.12 0.00 5.54
341 342 1.013596 TGCTTAACATTGATCGGCCG 58.986 50.000 22.12 22.12 0.00 6.13
342 343 2.479560 GGTTGCTTAACATTGATCGGCC 60.480 50.000 0.00 0.00 0.00 6.13
343 344 2.423538 AGGTTGCTTAACATTGATCGGC 59.576 45.455 0.00 0.00 0.00 5.54
344 345 3.440173 ACAGGTTGCTTAACATTGATCGG 59.560 43.478 0.00 0.00 0.00 4.18
345 346 4.685169 ACAGGTTGCTTAACATTGATCG 57.315 40.909 0.00 0.00 0.00 3.69
346 347 7.702348 GGATTTACAGGTTGCTTAACATTGATC 59.298 37.037 0.00 0.00 0.00 2.92
347 348 7.363793 GGGATTTACAGGTTGCTTAACATTGAT 60.364 37.037 0.00 0.00 0.00 2.57
348 349 6.071616 GGGATTTACAGGTTGCTTAACATTGA 60.072 38.462 0.00 0.00 0.00 2.57
349 350 6.099341 GGGATTTACAGGTTGCTTAACATTG 58.901 40.000 0.00 0.00 0.00 2.82
350 351 5.186992 GGGGATTTACAGGTTGCTTAACATT 59.813 40.000 0.00 0.00 0.00 2.71
351 352 4.709886 GGGGATTTACAGGTTGCTTAACAT 59.290 41.667 0.00 0.00 0.00 2.71
352 353 4.083565 GGGGATTTACAGGTTGCTTAACA 58.916 43.478 0.00 0.00 0.00 2.41
353 354 3.446161 GGGGGATTTACAGGTTGCTTAAC 59.554 47.826 0.00 0.00 0.00 2.01
354 355 3.703921 GGGGGATTTACAGGTTGCTTAA 58.296 45.455 0.00 0.00 0.00 1.85
355 356 2.356330 CGGGGGATTTACAGGTTGCTTA 60.356 50.000 0.00 0.00 0.00 3.09
356 357 1.615919 CGGGGGATTTACAGGTTGCTT 60.616 52.381 0.00 0.00 0.00 3.91
357 358 0.034477 CGGGGGATTTACAGGTTGCT 60.034 55.000 0.00 0.00 0.00 3.91
358 359 0.323087 ACGGGGGATTTACAGGTTGC 60.323 55.000 0.00 0.00 0.00 4.17
359 360 3.353370 TTACGGGGGATTTACAGGTTG 57.647 47.619 0.00 0.00 0.00 3.77
360 361 4.081406 GTTTTACGGGGGATTTACAGGTT 58.919 43.478 0.00 0.00 0.00 3.50
361 362 3.331591 AGTTTTACGGGGGATTTACAGGT 59.668 43.478 0.00 0.00 0.00 4.00
362 363 3.943381 GAGTTTTACGGGGGATTTACAGG 59.057 47.826 0.00 0.00 0.00 4.00
363 364 3.943381 GGAGTTTTACGGGGGATTTACAG 59.057 47.826 0.00 0.00 0.00 2.74
364 365 3.619487 CGGAGTTTTACGGGGGATTTACA 60.619 47.826 0.00 0.00 0.00 2.41
365 366 2.938451 CGGAGTTTTACGGGGGATTTAC 59.062 50.000 0.00 0.00 0.00 2.01
366 367 2.571202 ACGGAGTTTTACGGGGGATTTA 59.429 45.455 0.00 0.00 37.78 1.40
367 368 1.352017 ACGGAGTTTTACGGGGGATTT 59.648 47.619 0.00 0.00 37.78 2.17
368 369 0.986527 ACGGAGTTTTACGGGGGATT 59.013 50.000 0.00 0.00 37.78 3.01
369 370 1.482182 GTACGGAGTTTTACGGGGGAT 59.518 52.381 0.00 0.00 37.78 3.85
370 371 0.894835 GTACGGAGTTTTACGGGGGA 59.105 55.000 0.00 0.00 37.78 4.81
371 372 0.458370 CGTACGGAGTTTTACGGGGG 60.458 60.000 7.57 0.00 37.78 5.40
372 373 0.243636 ACGTACGGAGTTTTACGGGG 59.756 55.000 21.06 0.00 44.30 5.73
373 374 1.200020 AGACGTACGGAGTTTTACGGG 59.800 52.381 21.06 0.00 44.30 5.28
374 375 2.619013 AGACGTACGGAGTTTTACGG 57.381 50.000 21.06 0.00 44.30 4.02
375 376 3.094294 GCTAGACGTACGGAGTTTTACG 58.906 50.000 21.06 0.00 37.78 3.18
376 377 4.083581 TGCTAGACGTACGGAGTTTTAC 57.916 45.455 21.06 1.74 37.78 2.01
377 378 4.970662 ATGCTAGACGTACGGAGTTTTA 57.029 40.909 21.06 0.46 37.78 1.52
378 379 3.863142 ATGCTAGACGTACGGAGTTTT 57.137 42.857 21.06 0.00 37.78 2.43
379 380 3.944015 ACTATGCTAGACGTACGGAGTTT 59.056 43.478 21.06 0.00 37.78 2.66
380 381 3.539604 ACTATGCTAGACGTACGGAGTT 58.460 45.455 21.06 0.00 37.78 3.01
382 383 2.479656 GGACTATGCTAGACGTACGGAG 59.520 54.545 21.06 14.21 0.00 4.63
383 384 2.487934 GGACTATGCTAGACGTACGGA 58.512 52.381 21.06 3.34 0.00 4.69
384 385 1.534595 GGGACTATGCTAGACGTACGG 59.465 57.143 21.06 2.24 0.00 4.02
385 386 2.479656 GAGGGACTATGCTAGACGTACG 59.520 54.545 15.01 15.01 41.55 3.67
386 387 2.479656 CGAGGGACTATGCTAGACGTAC 59.520 54.545 0.00 0.00 41.55 3.67
387 388 2.763933 CGAGGGACTATGCTAGACGTA 58.236 52.381 0.00 0.00 41.55 3.57
388 389 1.595466 CGAGGGACTATGCTAGACGT 58.405 55.000 0.00 0.00 41.55 4.34
389 390 0.238817 GCGAGGGACTATGCTAGACG 59.761 60.000 0.00 0.00 41.55 4.18
390 391 1.319541 TGCGAGGGACTATGCTAGAC 58.680 55.000 0.00 0.00 41.55 2.59
391 392 2.067365 TTGCGAGGGACTATGCTAGA 57.933 50.000 0.00 0.00 41.55 2.43
392 393 2.611473 CCATTGCGAGGGACTATGCTAG 60.611 54.545 0.00 0.00 41.55 3.42
393 394 1.344438 CCATTGCGAGGGACTATGCTA 59.656 52.381 0.00 0.00 41.55 3.49
394 395 0.107456 CCATTGCGAGGGACTATGCT 59.893 55.000 0.00 0.00 41.55 3.79
395 396 1.510480 GCCATTGCGAGGGACTATGC 61.510 60.000 9.37 0.00 41.55 3.14
396 397 0.179048 TGCCATTGCGAGGGACTATG 60.179 55.000 9.37 0.00 41.78 2.23
397 398 0.179045 GTGCCATTGCGAGGGACTAT 60.179 55.000 9.37 0.00 43.34 2.12
398 399 1.220749 GTGCCATTGCGAGGGACTA 59.779 57.895 9.37 0.00 43.34 2.59
399 400 2.045926 GTGCCATTGCGAGGGACT 60.046 61.111 9.37 0.00 43.34 3.85
400 401 3.499737 CGTGCCATTGCGAGGGAC 61.500 66.667 9.37 6.14 43.25 4.46
403 404 3.869272 GAGCGTGCCATTGCGAGG 61.869 66.667 0.00 0.00 41.78 4.63
404 405 4.214383 CGAGCGTGCCATTGCGAG 62.214 66.667 0.00 0.00 41.78 5.03
407 408 4.527157 GAGCGAGCGTGCCATTGC 62.527 66.667 0.00 0.00 34.65 3.56
408 409 2.186350 TTTGAGCGAGCGTGCCATTG 62.186 55.000 0.00 0.00 34.65 2.82
409 410 1.514678 TTTTGAGCGAGCGTGCCATT 61.515 50.000 0.00 0.00 34.65 3.16
410 411 1.308069 ATTTTGAGCGAGCGTGCCAT 61.308 50.000 0.00 0.00 34.65 4.40
411 412 1.514678 AATTTTGAGCGAGCGTGCCA 61.515 50.000 0.00 0.00 34.65 4.92
412 413 1.067199 CAATTTTGAGCGAGCGTGCC 61.067 55.000 0.00 0.00 34.65 5.01
413 414 0.385974 ACAATTTTGAGCGAGCGTGC 60.386 50.000 0.00 0.00 0.00 5.34
414 415 1.069973 TGACAATTTTGAGCGAGCGTG 60.070 47.619 0.00 0.00 0.00 5.34
415 416 1.195448 CTGACAATTTTGAGCGAGCGT 59.805 47.619 0.00 0.00 0.00 5.07
416 417 1.195448 ACTGACAATTTTGAGCGAGCG 59.805 47.619 0.00 0.00 0.00 5.03
417 418 2.413371 GGACTGACAATTTTGAGCGAGC 60.413 50.000 0.00 0.00 0.00 5.03
418 419 2.807967 TGGACTGACAATTTTGAGCGAG 59.192 45.455 0.00 0.00 0.00 5.03
419 420 2.807967 CTGGACTGACAATTTTGAGCGA 59.192 45.455 0.00 0.00 0.00 4.93
420 421 2.095567 CCTGGACTGACAATTTTGAGCG 60.096 50.000 0.00 0.00 0.00 5.03
421 422 3.149196 TCCTGGACTGACAATTTTGAGC 58.851 45.455 0.00 0.00 0.00 4.26
422 423 5.709164 AGAATCCTGGACTGACAATTTTGAG 59.291 40.000 0.00 0.00 0.00 3.02
423 424 5.634118 AGAATCCTGGACTGACAATTTTGA 58.366 37.500 0.00 0.00 0.00 2.69
424 425 5.972107 AGAATCCTGGACTGACAATTTTG 57.028 39.130 0.00 0.00 0.00 2.44
425 426 6.784031 AGTAGAATCCTGGACTGACAATTTT 58.216 36.000 0.00 0.00 0.00 1.82
426 427 6.380079 AGTAGAATCCTGGACTGACAATTT 57.620 37.500 0.00 0.00 0.00 1.82
427 428 6.670027 AGTAGTAGAATCCTGGACTGACAATT 59.330 38.462 0.00 0.00 0.00 2.32
428 429 6.198639 AGTAGTAGAATCCTGGACTGACAAT 58.801 40.000 0.00 0.00 0.00 2.71
429 430 5.580998 AGTAGTAGAATCCTGGACTGACAA 58.419 41.667 0.00 0.00 0.00 3.18
430 431 5.194473 AGTAGTAGAATCCTGGACTGACA 57.806 43.478 0.00 0.00 0.00 3.58
431 432 5.680151 GCAAGTAGTAGAATCCTGGACTGAC 60.680 48.000 0.00 0.00 0.00 3.51
432 433 4.402793 GCAAGTAGTAGAATCCTGGACTGA 59.597 45.833 0.00 0.00 0.00 3.41
433 434 4.404073 AGCAAGTAGTAGAATCCTGGACTG 59.596 45.833 0.00 0.00 0.00 3.51
434 435 4.615513 AGCAAGTAGTAGAATCCTGGACT 58.384 43.478 0.00 0.00 0.00 3.85
435 436 5.346181 AAGCAAGTAGTAGAATCCTGGAC 57.654 43.478 0.00 0.00 0.00 4.02
436 437 5.721960 AGAAAGCAAGTAGTAGAATCCTGGA 59.278 40.000 0.00 0.00 0.00 3.86
437 438 5.983540 AGAAAGCAAGTAGTAGAATCCTGG 58.016 41.667 0.00 0.00 0.00 4.45
438 439 6.756074 CAGAGAAAGCAAGTAGTAGAATCCTG 59.244 42.308 0.00 0.00 0.00 3.86
439 440 6.439058 ACAGAGAAAGCAAGTAGTAGAATCCT 59.561 38.462 0.00 0.00 0.00 3.24
440 441 6.635755 ACAGAGAAAGCAAGTAGTAGAATCC 58.364 40.000 0.00 0.00 0.00 3.01
441 442 6.754675 GGACAGAGAAAGCAAGTAGTAGAATC 59.245 42.308 0.00 0.00 0.00 2.52
442 443 6.211584 TGGACAGAGAAAGCAAGTAGTAGAAT 59.788 38.462 0.00 0.00 0.00 2.40
443 444 5.538813 TGGACAGAGAAAGCAAGTAGTAGAA 59.461 40.000 0.00 0.00 0.00 2.10
444 445 5.077564 TGGACAGAGAAAGCAAGTAGTAGA 58.922 41.667 0.00 0.00 0.00 2.59
445 446 5.392767 TGGACAGAGAAAGCAAGTAGTAG 57.607 43.478 0.00 0.00 0.00 2.57
446 447 6.360370 AATGGACAGAGAAAGCAAGTAGTA 57.640 37.500 0.00 0.00 0.00 1.82
447 448 4.899352 ATGGACAGAGAAAGCAAGTAGT 57.101 40.909 0.00 0.00 0.00 2.73
448 449 6.402222 ACTAATGGACAGAGAAAGCAAGTAG 58.598 40.000 0.00 0.00 0.00 2.57
449 450 6.360370 ACTAATGGACAGAGAAAGCAAGTA 57.640 37.500 0.00 0.00 0.00 2.24
450 451 5.234466 ACTAATGGACAGAGAAAGCAAGT 57.766 39.130 0.00 0.00 0.00 3.16
451 452 7.044181 TGATACTAATGGACAGAGAAAGCAAG 58.956 38.462 0.00 0.00 0.00 4.01
452 453 6.946340 TGATACTAATGGACAGAGAAAGCAA 58.054 36.000 0.00 0.00 0.00 3.91
453 454 6.544928 TGATACTAATGGACAGAGAAAGCA 57.455 37.500 0.00 0.00 0.00 3.91
454 455 6.989169 ACATGATACTAATGGACAGAGAAAGC 59.011 38.462 0.00 0.00 0.00 3.51
455 456 7.984050 ACACATGATACTAATGGACAGAGAAAG 59.016 37.037 0.00 0.00 0.00 2.62
456 457 7.851228 ACACATGATACTAATGGACAGAGAAA 58.149 34.615 0.00 0.00 0.00 2.52
457 458 7.423844 ACACATGATACTAATGGACAGAGAA 57.576 36.000 0.00 0.00 0.00 2.87
458 459 7.423844 AACACATGATACTAATGGACAGAGA 57.576 36.000 0.00 0.00 0.00 3.10
459 460 9.254133 CTAAACACATGATACTAATGGACAGAG 57.746 37.037 0.00 0.00 0.00 3.35
460 461 7.710907 GCTAAACACATGATACTAATGGACAGA 59.289 37.037 0.00 0.00 0.00 3.41
461 462 7.041780 GGCTAAACACATGATACTAATGGACAG 60.042 40.741 0.00 0.00 0.00 3.51
462 463 6.765989 GGCTAAACACATGATACTAATGGACA 59.234 38.462 0.00 0.00 0.00 4.02
463 464 6.992715 AGGCTAAACACATGATACTAATGGAC 59.007 38.462 0.00 0.00 0.00 4.02
464 465 7.136822 AGGCTAAACACATGATACTAATGGA 57.863 36.000 0.00 0.00 0.00 3.41
465 466 6.146184 CGAGGCTAAACACATGATACTAATGG 59.854 42.308 0.00 0.00 0.00 3.16
466 467 6.701841 ACGAGGCTAAACACATGATACTAATG 59.298 38.462 0.00 0.00 0.00 1.90
467 468 6.817184 ACGAGGCTAAACACATGATACTAAT 58.183 36.000 0.00 0.00 0.00 1.73
468 469 6.216801 ACGAGGCTAAACACATGATACTAA 57.783 37.500 0.00 0.00 0.00 2.24
469 470 5.847111 ACGAGGCTAAACACATGATACTA 57.153 39.130 0.00 0.00 0.00 1.82
470 471 4.737855 ACGAGGCTAAACACATGATACT 57.262 40.909 0.00 0.00 0.00 2.12
471 472 4.630069 ACAACGAGGCTAAACACATGATAC 59.370 41.667 0.00 0.00 0.00 2.24
472 473 4.827692 ACAACGAGGCTAAACACATGATA 58.172 39.130 0.00 0.00 0.00 2.15
473 474 3.674997 ACAACGAGGCTAAACACATGAT 58.325 40.909 0.00 0.00 0.00 2.45
474 475 3.120321 ACAACGAGGCTAAACACATGA 57.880 42.857 0.00 0.00 0.00 3.07
475 476 3.249799 TGAACAACGAGGCTAAACACATG 59.750 43.478 0.00 0.00 0.00 3.21
476 477 3.472652 TGAACAACGAGGCTAAACACAT 58.527 40.909 0.00 0.00 0.00 3.21
483 484 2.279741 GCATGATGAACAACGAGGCTA 58.720 47.619 0.00 0.00 0.00 3.93
538 541 1.153588 CCCGAAACCATGGCATTGC 60.154 57.895 13.04 0.00 0.00 3.56
606 610 2.009681 TAGGATAATCCAGGAGCGCA 57.990 50.000 11.47 0.00 39.61 6.09
610 614 3.777522 GGGTCCATAGGATAATCCAGGAG 59.222 52.174 0.00 0.00 39.61 3.69
628 632 2.262915 CGAGTGTGGCAGAGGGTC 59.737 66.667 0.00 0.00 0.00 4.46
672 676 1.214589 CCATGCCAGTCTTTGCAGC 59.785 57.895 0.78 0.00 41.46 5.25
780 784 5.467705 ACGATGGTCAGTAGAACAAGTTAC 58.532 41.667 0.00 0.00 46.26 2.50
787 791 4.745649 AGCTAAACGATGGTCAGTAGAAC 58.254 43.478 0.00 0.00 0.00 3.01
848 852 2.596452 CGAGCAGAGAAGCGTTTTAGA 58.404 47.619 0.00 0.00 40.15 2.10
852 856 2.029844 GGCGAGCAGAGAAGCGTTT 61.030 57.895 0.00 0.00 40.15 3.60
856 864 2.202864 GGAGGCGAGCAGAGAAGC 60.203 66.667 0.00 0.00 0.00 3.86
858 866 0.818296 GTAAGGAGGCGAGCAGAGAA 59.182 55.000 0.00 0.00 0.00 2.87
884 892 2.224257 GCAGGAGAAGATCAGATCACCC 60.224 54.545 13.14 7.55 0.00 4.61
983 1004 6.017109 ACAGAGCATGGTTAGTGTAAAGTTTG 60.017 38.462 0.00 0.00 0.00 2.93
985 1010 5.621193 ACAGAGCATGGTTAGTGTAAAGTT 58.379 37.500 0.00 0.00 0.00 2.66
991 1016 2.299013 TCGAACAGAGCATGGTTAGTGT 59.701 45.455 0.00 0.62 0.00 3.55
1002 1027 4.906423 TCTTTCGTACTATCGAACAGAGC 58.094 43.478 4.54 0.00 46.89 4.09
1167 1206 0.590230 GATCAGACGAAGCGACGGAG 60.590 60.000 9.92 0.75 37.61 4.63
1211 1250 3.818773 GCAGACAGATAGTAGGAGGAGTC 59.181 52.174 0.00 0.00 0.00 3.36
1704 1759 7.568199 AATGATAGGTAAGCTTTGCGTATTT 57.432 32.000 3.20 0.45 0.00 1.40
1705 1760 7.568199 AAATGATAGGTAAGCTTTGCGTATT 57.432 32.000 3.20 0.00 0.00 1.89
1706 1761 8.848474 ATAAATGATAGGTAAGCTTTGCGTAT 57.152 30.769 3.20 9.66 0.00 3.06
1729 1786 8.079211 ACTCTGTTTGCTTCTACCTATCAATA 57.921 34.615 0.00 0.00 0.00 1.90
1732 1789 6.360370 AACTCTGTTTGCTTCTACCTATCA 57.640 37.500 0.00 0.00 0.00 2.15
1733 1790 5.813157 GGAACTCTGTTTGCTTCTACCTATC 59.187 44.000 0.00 0.00 0.00 2.08
1744 1801 1.251251 ATGCCTGGAACTCTGTTTGC 58.749 50.000 0.00 0.00 0.00 3.68
1758 1815 2.185387 ACGTCCCTAAGTGTAATGCCT 58.815 47.619 0.00 0.00 0.00 4.75
1759 1816 2.685850 ACGTCCCTAAGTGTAATGCC 57.314 50.000 0.00 0.00 0.00 4.40
1760 1817 3.861689 GTGTACGTCCCTAAGTGTAATGC 59.138 47.826 0.00 0.00 0.00 3.56
1776 1833 1.912281 CGCCGTTTATCCGTGTACG 59.088 57.895 0.00 0.00 39.44 3.67
1810 1867 1.066002 CAAGCAATAGGACAATGGCCG 59.934 52.381 0.00 0.00 0.00 6.13
1823 1880 2.753043 CGCTCTGGGCCAAGCAAT 60.753 61.111 28.08 0.00 38.45 3.56
1932 1989 4.393155 ATGGCCTCGCAGCGTTCA 62.393 61.111 15.93 9.38 0.00 3.18
1990 2047 1.018148 TTGTGGACGCGTGAAACATT 58.982 45.000 20.70 0.00 35.74 2.71
2022 2079 3.085208 CTGCACGACAGGCCATTAT 57.915 52.632 5.01 0.00 43.19 1.28
2162 2220 0.249120 CTCGATGCCTTGTACCCACA 59.751 55.000 0.00 0.00 0.00 4.17
2233 2291 0.514691 GAAAGGTGAACGAGCTGCAG 59.485 55.000 10.11 10.11 30.84 4.41
2399 2457 2.125350 CAGCGAGCCAGAGGAACC 60.125 66.667 0.00 0.00 0.00 3.62
2417 2475 4.020617 TCCAGCAGCGGTCAAGGG 62.021 66.667 3.62 0.00 0.00 3.95
2466 2524 1.739466 GCAGGCAAAGAATCATCGTGA 59.261 47.619 0.00 0.00 0.00 4.35
2478 2536 1.136695 CTTGGTCACAAAGCAGGCAAA 59.863 47.619 0.00 0.00 36.57 3.68
2505 2563 0.454600 CAGGATGTGTTGGATGCAGC 59.545 55.000 0.00 0.00 0.00 5.25
2506 2564 1.100510 CCAGGATGTGTTGGATGCAG 58.899 55.000 0.00 0.00 36.55 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.