Multiple sequence alignment - TraesCS3D01G352700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G352700 chr3D 100.000 5183 0 0 1 5183 463382808 463377626 0.000000e+00 9572.0
1 TraesCS3D01G352700 chr3D 88.843 1954 172 18 3254 5183 463260111 463258180 0.000000e+00 2359.0
2 TraesCS3D01G352700 chr3D 88.821 1950 176 16 3258 5183 463228696 463226765 0.000000e+00 2355.0
3 TraesCS3D01G352700 chr3D 94.171 1098 51 5 670 1767 463262102 463261018 0.000000e+00 1661.0
4 TraesCS3D01G352700 chr3D 86.300 1000 103 16 902 1883 463230555 463229572 0.000000e+00 1057.0
5 TraesCS3D01G352700 chr3D 89.315 730 73 2 2126 2852 463260829 463260102 0.000000e+00 911.0
6 TraesCS3D01G352700 chr3D 89.271 727 75 3 2126 2852 463229414 463228691 0.000000e+00 907.0
7 TraesCS3D01G352700 chr3D 84.741 793 84 26 886 1658 463199352 463198577 0.000000e+00 760.0
8 TraesCS3D01G352700 chr3D 88.736 364 30 8 144 498 463382297 463381936 7.970000e-118 435.0
9 TraesCS3D01G352700 chr3D 88.736 364 30 8 512 873 463382665 463382311 7.970000e-118 435.0
10 TraesCS3D01G352700 chr3D 83.374 409 40 16 2854 3253 517012053 517011664 2.300000e-93 353.0
11 TraesCS3D01G352700 chr3D 84.770 348 32 14 2872 3215 126385801 126385471 3.870000e-86 329.0
12 TraesCS3D01G352700 chr3D 79.950 399 66 10 90 477 463262741 463262346 1.100000e-71 281.0
13 TraesCS3D01G352700 chr3D 92.771 166 12 0 1987 2152 463229586 463229421 1.860000e-59 241.0
14 TraesCS3D01G352700 chr3D 92.771 166 12 0 1987 2152 463261001 463260836 1.860000e-59 241.0
15 TraesCS3D01G352700 chr3D 91.429 175 13 2 326 498 463262076 463261902 6.710000e-59 239.0
16 TraesCS3D01G352700 chr3D 86.207 116 15 1 514 628 463262215 463262100 1.960000e-24 124.0
17 TraesCS3D01G352700 chr3A 92.162 2118 131 14 36 2134 606577125 606575024 0.000000e+00 2959.0
18 TraesCS3D01G352700 chr3A 87.621 1955 197 19 3254 5183 606517163 606515229 0.000000e+00 2228.0
19 TraesCS3D01G352700 chr3A 90.302 1258 113 6 3254 4505 606574570 606573316 0.000000e+00 1639.0
20 TraesCS3D01G352700 chr3A 88.235 782 71 12 988 1756 606519173 606518400 0.000000e+00 915.0
21 TraesCS3D01G352700 chr3A 82.781 784 99 19 886 1647 606446894 606446125 0.000000e+00 667.0
22 TraesCS3D01G352700 chr3A 90.989 455 41 0 2222 2676 606518016 606517562 9.540000e-172 614.0
23 TraesCS3D01G352700 chr3A 88.813 438 46 3 4747 5183 606571718 606571283 7.640000e-148 534.0
24 TraesCS3D01G352700 chr3A 88.161 397 38 7 512 906 606577017 606576628 1.020000e-126 464.0
25 TraesCS3D01G352700 chr3A 87.187 359 34 4 144 498 606576639 606576289 1.050000e-106 398.0
26 TraesCS3D01G352700 chr3A 86.581 313 40 2 4502 4814 606572029 606571719 1.380000e-90 344.0
27 TraesCS3D01G352700 chr3A 90.196 102 10 0 2751 2852 606517255 606517154 3.260000e-27 134.0
28 TraesCS3D01G352700 chr3A 98.039 51 1 0 1757 1807 606518352 606518302 7.150000e-14 89.8
29 TraesCS3D01G352700 chr3B 88.009 1693 153 19 3254 4910 616646542 616644864 0.000000e+00 1956.0
30 TraesCS3D01G352700 chr3B 90.062 1127 90 13 32 1145 616685511 616684394 0.000000e+00 1441.0
31 TraesCS3D01G352700 chr3B 92.766 940 44 14 822 1756 616648007 616647087 0.000000e+00 1338.0
32 TraesCS3D01G352700 chr3B 91.020 735 43 10 36 753 616648741 616648013 0.000000e+00 970.0
33 TraesCS3D01G352700 chr3B 83.715 786 93 18 891 1658 616427080 616426312 0.000000e+00 710.0
34 TraesCS3D01G352700 chr3B 87.626 396 41 7 512 906 616648633 616648245 2.200000e-123 453.0
35 TraesCS3D01G352700 chr3B 88.889 360 35 3 144 498 616685025 616684666 6.160000e-119 438.0
36 TraesCS3D01G352700 chr3B 86.650 397 40 11 512 906 616685399 616685014 1.330000e-115 427.0
37 TraesCS3D01G352700 chr3B 89.494 257 25 2 2596 2852 616646787 616646533 1.800000e-84 324.0
38 TraesCS3D01G352700 chr3B 86.022 279 28 6 4905 5183 616639771 616639504 6.570000e-74 289.0
39 TraesCS3D01G352700 chr3B 89.474 133 7 1 1757 1882 616647037 616646905 1.490000e-35 161.0
40 TraesCS3D01G352700 chr3B 89.286 56 6 0 1987 2042 616646918 616646863 2.590000e-08 71.3
41 TraesCS3D01G352700 chr3B 97.059 34 0 1 1 34 481661017 481660985 7.250000e-04 56.5
42 TraesCS3D01G352700 chr5D 83.902 410 49 17 2854 3254 42962213 42962614 4.900000e-100 375.0
43 TraesCS3D01G352700 chr5D 85.196 358 32 15 2862 3210 37662003 37662348 1.070000e-91 348.0
44 TraesCS3D01G352700 chr5D 97.059 34 1 0 1 34 362291370 362291337 2.020000e-04 58.4
45 TraesCS3D01G352700 chr5D 94.444 36 2 0 1 36 15460910 15460875 7.250000e-04 56.5
46 TraesCS3D01G352700 chr7A 85.556 360 33 12 2910 3257 156321358 156321006 4.930000e-95 359.0
47 TraesCS3D01G352700 chr7A 94.595 37 0 2 1 35 518901392 518901428 7.250000e-04 56.5
48 TraesCS3D01G352700 chr6B 81.884 414 52 20 2855 3253 176281538 176281133 1.390000e-85 327.0
49 TraesCS3D01G352700 chr6B 100.000 30 0 0 1 30 673221770 673221799 7.250000e-04 56.5
50 TraesCS3D01G352700 chr2B 80.907 419 50 22 2850 3254 72910723 72910321 2.350000e-78 303.0
51 TraesCS3D01G352700 chr4D 82.730 359 42 18 2854 3203 323597559 323597212 8.430000e-78 302.0
52 TraesCS3D01G352700 chr7D 80.941 404 49 20 2854 3253 623022526 623022905 1.410000e-75 294.0
53 TraesCS3D01G352700 chr6D 100.000 31 0 0 1 31 30552706 30552736 2.020000e-04 58.4
54 TraesCS3D01G352700 chr6D 94.595 37 1 1 1 37 61646820 61646855 7.250000e-04 56.5
55 TraesCS3D01G352700 chr1B 97.059 34 1 0 1 34 308507066 308507099 2.020000e-04 58.4
56 TraesCS3D01G352700 chr5B 94.444 36 1 1 1 36 289924101 289924067 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G352700 chr3D 463377626 463382808 5182 True 3480.666667 9572 92.490667 1 5183 3 chr3D.!!$R6 5182
1 TraesCS3D01G352700 chr3D 463226765 463230555 3790 True 1140.000000 2355 89.290750 902 5183 4 chr3D.!!$R4 4281
2 TraesCS3D01G352700 chr3D 463258180 463262741 4561 True 830.857143 2359 88.955143 90 5183 7 chr3D.!!$R5 5093
3 TraesCS3D01G352700 chr3D 463198577 463199352 775 True 760.000000 760 84.741000 886 1658 1 chr3D.!!$R2 772
4 TraesCS3D01G352700 chr3A 606571283 606577125 5842 True 1056.333333 2959 88.867667 36 5183 6 chr3A.!!$R3 5147
5 TraesCS3D01G352700 chr3A 606515229 606519173 3944 True 796.160000 2228 91.016000 988 5183 5 chr3A.!!$R2 4195
6 TraesCS3D01G352700 chr3A 606446125 606446894 769 True 667.000000 667 82.781000 886 1647 1 chr3A.!!$R1 761
7 TraesCS3D01G352700 chr3B 616684394 616685511 1117 True 768.666667 1441 88.533667 32 1145 3 chr3B.!!$R5 1113
8 TraesCS3D01G352700 chr3B 616644864 616648741 3877 True 753.328571 1956 89.667857 36 4910 7 chr3B.!!$R4 4874
9 TraesCS3D01G352700 chr3B 616426312 616427080 768 True 710.000000 710 83.715000 891 1658 1 chr3B.!!$R2 767

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
657 765 0.448990 CACGAGTCATGCCACATTGG 59.551 55.0 0.00 0.00 41.55 3.16 F
1336 1474 0.247736 CTACTTCGCCAGGCAGTTCT 59.752 55.0 13.30 0.00 0.00 3.01 F
2386 2809 0.034960 TAGCGCCCCTGCACATAAAA 60.035 50.0 2.29 0.00 37.32 1.52 F
3109 3848 0.037232 GCCCTGAAGTCAACGCTAGT 60.037 55.0 0.00 0.00 0.00 2.57 F
3769 4521 0.107993 AGCGATGTACATGCAGCAGT 60.108 50.0 23.27 1.91 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 2274 0.178990 AGACTTGAACTTGGGTGGGC 60.179 55.0 0.00 0.0 0.00 5.36 R
3090 3829 0.037232 ACTAGCGTTGACTTCAGGGC 60.037 55.0 0.00 0.0 0.00 5.19 R
3251 3990 0.179026 AGCAGCAGCAGGATACATGG 60.179 55.0 3.17 0.0 45.49 3.66 R
4113 4865 0.179134 CACAAGAGATCGACCCGGAC 60.179 60.0 0.73 0.0 0.00 4.79 R
5099 7239 2.859165 TGACTCATCACAAAGGGGTC 57.141 50.0 0.00 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.345808 CGCCCACCACGACAACAG 61.346 66.667 0.00 0.00 0.00 3.16
31 32 2.978010 GCCCACCACGACAACAGG 60.978 66.667 0.00 0.00 0.00 4.00
32 33 2.508928 CCCACCACGACAACAGGT 59.491 61.111 0.00 0.00 35.65 4.00
80 81 4.749245 TGCGCTTTTAGAGGAGAAAAAG 57.251 40.909 9.73 3.74 42.79 2.27
99 100 1.009335 GGAAACCGTTTGACCGTGC 60.009 57.895 0.00 0.00 0.00 5.34
113 114 0.733150 CCGTGCGAGTCACTAGATGA 59.267 55.000 0.00 0.00 43.46 2.92
127 128 5.701290 TCACTAGATGAGCGAATAGATCGAA 59.299 40.000 0.00 0.00 42.35 3.71
221 222 7.605449 ACCACTTTGTACGTTACTATATGTGT 58.395 34.615 0.00 0.00 0.00 3.72
246 249 7.064134 GTGGTCTTATCATTATCACACAAACGA 59.936 37.037 0.00 0.00 0.00 3.85
307 310 6.373216 ACATTGCGGTGCTTCTTTAACTTATA 59.627 34.615 0.00 0.00 0.00 0.98
312 317 7.011109 TGCGGTGCTTCTTTAACTTATATTCTC 59.989 37.037 0.00 0.00 0.00 2.87
344 349 1.064463 ACTGACATATGGGCCCACAAG 60.064 52.381 31.51 17.19 0.00 3.16
592 700 6.239008 GCTTGTACGTTACTATATGTGGGGTA 60.239 42.308 0.00 0.00 0.00 3.69
593 701 7.652524 TTGTACGTTACTATATGTGGGGTAA 57.347 36.000 0.00 0.00 0.00 2.85
618 726 2.139917 GTTATCACACAAGCACGGTGA 58.860 47.619 13.29 6.26 44.73 4.02
622 730 2.661537 CACAAGCACGGTGAGCGA 60.662 61.111 12.27 0.00 38.54 4.93
623 731 2.661866 ACAAGCACGGTGAGCGAC 60.662 61.111 12.27 1.98 37.01 5.19
657 765 0.448990 CACGAGTCATGCCACATTGG 59.551 55.000 0.00 0.00 41.55 3.16
876 984 2.685380 CTCCACGCCCCTTCTCCT 60.685 66.667 0.00 0.00 0.00 3.69
931 1041 2.589157 CCAACACTCCGCCCCACTA 61.589 63.158 0.00 0.00 0.00 2.74
1020 1131 2.711922 GGAGAGCGTCGACCACCAT 61.712 63.158 10.58 0.00 0.00 3.55
1212 1341 3.243569 CCGAGAAGATACATCAGGTGACC 60.244 52.174 0.00 0.00 0.00 4.02
1336 1474 0.247736 CTACTTCGCCAGGCAGTTCT 59.752 55.000 13.30 0.00 0.00 3.01
1640 1800 0.467290 AACCCACACGGCTTTCATGT 60.467 50.000 0.00 0.00 33.26 3.21
1775 1992 5.408880 TGATGGTAGTTTGGTTCGTATGA 57.591 39.130 0.00 0.00 0.00 2.15
1838 2228 2.743752 GCTCACGATGTGCACGCAT 61.744 57.895 13.13 0.02 36.90 4.73
1858 2248 2.407562 TGGATGCAAGGTAGCTCCATA 58.592 47.619 0.00 0.00 37.10 2.74
1884 2274 2.009042 GCTTGTACTAGCACCTGCCAG 61.009 57.143 22.06 0.00 43.38 4.85
1898 2288 2.520458 CCAGCCCACCCAAGTTCA 59.480 61.111 0.00 0.00 0.00 3.18
1905 2295 1.512926 CCACCCAAGTTCAAGTCTCG 58.487 55.000 0.00 0.00 0.00 4.04
1914 2304 1.192534 GTTCAAGTCTCGGCTTTGACG 59.807 52.381 0.00 0.00 38.16 4.35
1918 2308 4.735132 TCTCGGCTTTGACGCGGG 62.735 66.667 12.47 0.00 32.07 6.13
1920 2310 3.636313 CTCGGCTTTGACGCGGGTA 62.636 63.158 12.47 0.00 32.07 3.69
1925 2315 1.804326 CTTTGACGCGGGTACTCGG 60.804 63.158 18.45 9.65 0.00 4.63
1927 2317 4.720902 TGACGCGGGTACTCGGGA 62.721 66.667 35.34 14.13 44.22 5.14
1933 2323 0.738762 GCGGGTACTCGGGAAGTTTC 60.739 60.000 18.45 0.00 39.55 2.78
1936 2326 1.206610 GGGTACTCGGGAAGTTTCTCC 59.793 57.143 0.00 0.00 39.55 3.71
1965 2355 4.388577 AAAGTCAACAAGGATTAGCCCT 57.611 40.909 0.00 0.00 38.42 5.19
1976 2366 2.778270 GGATTAGCCCTTGGGTTAGTCT 59.222 50.000 18.97 6.54 34.28 3.24
1977 2367 3.202373 GGATTAGCCCTTGGGTTAGTCTT 59.798 47.826 18.97 2.17 34.28 3.01
1980 2370 3.612795 AGCCCTTGGGTTAGTCTTTTT 57.387 42.857 7.61 0.00 0.00 1.94
2001 2391 0.838554 TTGGGTACTAGCACCTGCCA 60.839 55.000 12.02 0.00 43.38 4.92
2002 2392 0.838554 TGGGTACTAGCACCTGCCAA 60.839 55.000 12.02 0.00 43.38 4.52
2033 2423 1.202746 TGCCAGCACTATGTGTCAACA 60.203 47.619 0.00 0.00 41.58 3.33
2120 2510 4.199310 GTTGGATTAAGCAGTAGCCATCA 58.801 43.478 0.00 0.00 43.56 3.07
2134 2524 1.745115 CATCACCCCGCAACATCGT 60.745 57.895 0.00 0.00 0.00 3.73
2135 2525 1.449601 ATCACCCCGCAACATCGTC 60.450 57.895 0.00 0.00 0.00 4.20
2140 2530 4.147322 CCGCAACATCGTCCGTGC 62.147 66.667 0.00 0.00 0.00 5.34
2144 2534 2.030412 AACATCGTCCGTGCTGCA 59.970 55.556 0.00 0.00 0.00 4.41
2165 2588 0.310543 GCCGTCACTGCAAAATGTCA 59.689 50.000 0.00 0.00 0.00 3.58
2173 2596 2.223479 ACTGCAAAATGTCACCGTTGTC 60.223 45.455 0.00 0.00 0.00 3.18
2184 2607 0.375803 ACCGTTGTCGTCAAAGTTGC 59.624 50.000 7.42 0.00 35.20 4.17
2207 2630 0.996462 CGCAACACCGACGATATTGT 59.004 50.000 0.00 0.00 0.00 2.71
2264 2687 0.661020 GCCGTAACTTGCAACAGTGT 59.339 50.000 0.00 0.00 0.00 3.55
2265 2688 1.064952 GCCGTAACTTGCAACAGTGTT 59.935 47.619 1.64 1.64 0.00 3.32
2315 2738 2.433145 CGCTCCTTCGCAGCTTCA 60.433 61.111 0.00 0.00 34.45 3.02
2344 2767 0.930310 GCTCGCAGCATTGTTCGATA 59.070 50.000 0.00 0.00 41.89 2.92
2359 2782 5.004448 TGTTCGATAGTCTTCTCTGACAGT 58.996 41.667 1.59 0.00 39.27 3.55
2361 2784 4.580868 TCGATAGTCTTCTCTGACAGTGT 58.419 43.478 0.00 0.00 39.27 3.55
2382 2805 3.716195 TGTAGCGCCCCTGCACAT 61.716 61.111 2.29 0.00 37.32 3.21
2386 2809 0.034960 TAGCGCCCCTGCACATAAAA 60.035 50.000 2.29 0.00 37.32 1.52
2456 2882 3.244078 ACAACCTTGAAGCATCAGTACGA 60.244 43.478 0.00 0.00 36.78 3.43
2459 2885 3.244078 ACCTTGAAGCATCAGTACGACAA 60.244 43.478 0.00 0.00 36.78 3.18
2460 2886 3.935203 CCTTGAAGCATCAGTACGACAAT 59.065 43.478 0.00 0.00 36.78 2.71
2510 2936 5.475220 TGACCTGCCGAAGAAAATTCAATTA 59.525 36.000 0.00 0.00 0.00 1.40
2522 2948 6.215431 AGAAAATTCAATTAGGGGAAAAGGGG 59.785 38.462 0.00 0.00 0.00 4.79
2530 2956 0.407918 GGGGAAAAGGGGATGTGTCA 59.592 55.000 0.00 0.00 0.00 3.58
2545 2971 1.996191 GTGTCAGGAAGAAGACGATGC 59.004 52.381 0.00 0.00 37.58 3.91
2669 3131 2.472816 GACCAACATTGCAAACACCTG 58.527 47.619 1.71 0.00 0.00 4.00
2686 3148 1.138859 CCTGTGTGTGTGGTCAGAAGA 59.861 52.381 0.00 0.00 0.00 2.87
2695 3157 0.464036 TGGTCAGAAGAGTGTTGCGT 59.536 50.000 0.00 0.00 0.00 5.24
2730 3192 2.808543 ACGTTGAAGAGTCAATTGAGGC 59.191 45.455 8.80 3.83 45.38 4.70
2760 3222 1.918262 TCCTTCTCATCTTGCCCATGT 59.082 47.619 0.00 0.00 0.00 3.21
2836 3575 1.904287 AGATTTAACGTTGCAGGGCA 58.096 45.000 11.99 0.00 36.47 5.36
2844 3583 4.342427 TTGCAGGGCAAGGCTATG 57.658 55.556 0.00 0.00 43.99 2.23
2845 3584 1.383799 TTGCAGGGCAAGGCTATGT 59.616 52.632 0.00 0.00 43.99 2.29
2846 3585 0.623194 TTGCAGGGCAAGGCTATGTA 59.377 50.000 0.00 0.00 43.99 2.29
2847 3586 0.846015 TGCAGGGCAAGGCTATGTAT 59.154 50.000 0.00 0.00 34.76 2.29
2848 3587 1.202806 TGCAGGGCAAGGCTATGTATC 60.203 52.381 0.00 0.00 34.76 2.24
2849 3588 1.884067 GCAGGGCAAGGCTATGTATCC 60.884 57.143 0.00 0.00 0.00 2.59
2850 3589 1.701847 CAGGGCAAGGCTATGTATCCT 59.298 52.381 0.00 0.00 0.00 3.24
2851 3590 1.701847 AGGGCAAGGCTATGTATCCTG 59.298 52.381 0.00 0.00 32.00 3.86
2852 3591 1.699634 GGGCAAGGCTATGTATCCTGA 59.300 52.381 0.00 0.00 32.00 3.86
2853 3592 2.289945 GGGCAAGGCTATGTATCCTGAG 60.290 54.545 0.00 0.00 32.00 3.35
2854 3593 2.634940 GGCAAGGCTATGTATCCTGAGA 59.365 50.000 0.00 0.00 32.00 3.27
2855 3594 3.306641 GGCAAGGCTATGTATCCTGAGAG 60.307 52.174 0.00 0.00 32.00 3.20
2856 3595 3.306641 GCAAGGCTATGTATCCTGAGAGG 60.307 52.174 0.00 0.00 36.46 3.69
2857 3596 3.182887 AGGCTATGTATCCTGAGAGGG 57.817 52.381 0.00 0.00 35.59 4.30
2858 3597 2.183679 GGCTATGTATCCTGAGAGGGG 58.816 57.143 0.00 0.00 35.59 4.79
2859 3598 2.225394 GGCTATGTATCCTGAGAGGGGA 60.225 54.545 0.00 0.00 35.59 4.81
2860 3599 2.829120 GCTATGTATCCTGAGAGGGGAC 59.171 54.545 0.00 0.00 35.59 4.46
2875 3614 1.266178 GGGACCTTTTGTTCCATGGG 58.734 55.000 13.02 0.00 42.98 4.00
2876 3615 1.482365 GGGACCTTTTGTTCCATGGGT 60.482 52.381 13.02 0.00 42.98 4.51
2877 3616 1.618343 GGACCTTTTGTTCCATGGGTG 59.382 52.381 13.02 0.00 0.00 4.61
2878 3617 2.316108 GACCTTTTGTTCCATGGGTGT 58.684 47.619 13.02 0.00 0.00 4.16
2879 3618 2.035832 GACCTTTTGTTCCATGGGTGTG 59.964 50.000 13.02 0.00 0.00 3.82
2880 3619 2.038659 CCTTTTGTTCCATGGGTGTGT 58.961 47.619 13.02 0.00 0.00 3.72
2881 3620 3.226777 CCTTTTGTTCCATGGGTGTGTA 58.773 45.455 13.02 0.00 0.00 2.90
2882 3621 3.831911 CCTTTTGTTCCATGGGTGTGTAT 59.168 43.478 13.02 0.00 0.00 2.29
2883 3622 5.013547 CCTTTTGTTCCATGGGTGTGTATA 58.986 41.667 13.02 0.00 0.00 1.47
2884 3623 5.105917 CCTTTTGTTCCATGGGTGTGTATAC 60.106 44.000 13.02 0.00 0.00 1.47
2885 3624 4.642466 TTGTTCCATGGGTGTGTATACA 57.358 40.909 13.02 0.08 0.00 2.29
2901 3640 8.555896 TGTGTATACACCCTATATGGAAAAGA 57.444 34.615 28.67 5.63 45.88 2.52
2902 3641 9.166222 TGTGTATACACCCTATATGGAAAAGAT 57.834 33.333 28.67 0.00 45.88 2.40
2964 3703 9.844257 TTTTTGAAATAAACATGACCTTCCATT 57.156 25.926 0.00 0.00 0.00 3.16
2965 3704 8.830201 TTTGAAATAAACATGACCTTCCATTG 57.170 30.769 0.00 0.00 0.00 2.82
2966 3705 7.537596 TGAAATAAACATGACCTTCCATTGT 57.462 32.000 0.00 0.00 0.00 2.71
2967 3706 8.642935 TGAAATAAACATGACCTTCCATTGTA 57.357 30.769 0.00 0.00 0.00 2.41
2968 3707 8.519526 TGAAATAAACATGACCTTCCATTGTAC 58.480 33.333 0.00 0.00 0.00 2.90
2969 3708 8.650143 AAATAAACATGACCTTCCATTGTACT 57.350 30.769 0.00 0.00 0.00 2.73
2970 3709 5.964958 AAACATGACCTTCCATTGTACTG 57.035 39.130 0.00 0.00 0.00 2.74
2971 3710 3.955471 ACATGACCTTCCATTGTACTGG 58.045 45.455 0.00 0.00 37.66 4.00
2972 3711 3.330701 ACATGACCTTCCATTGTACTGGT 59.669 43.478 0.00 0.00 37.57 4.00
2973 3712 4.534500 ACATGACCTTCCATTGTACTGGTA 59.466 41.667 0.00 0.00 37.57 3.25
2974 3713 5.013704 ACATGACCTTCCATTGTACTGGTAA 59.986 40.000 0.00 0.00 37.57 2.85
2975 3714 5.570205 TGACCTTCCATTGTACTGGTAAA 57.430 39.130 1.40 0.00 37.57 2.01
2976 3715 5.942961 TGACCTTCCATTGTACTGGTAAAA 58.057 37.500 1.40 0.00 37.57 1.52
2977 3716 6.548321 TGACCTTCCATTGTACTGGTAAAAT 58.452 36.000 1.40 0.00 37.57 1.82
2978 3717 7.691213 TGACCTTCCATTGTACTGGTAAAATA 58.309 34.615 1.40 0.00 37.57 1.40
2979 3718 8.164733 TGACCTTCCATTGTACTGGTAAAATAA 58.835 33.333 1.40 0.00 37.57 1.40
2980 3719 8.943594 ACCTTCCATTGTACTGGTAAAATAAA 57.056 30.769 1.40 0.00 37.57 1.40
2981 3720 9.541884 ACCTTCCATTGTACTGGTAAAATAAAT 57.458 29.630 1.40 0.00 37.57 1.40
2985 3724 9.535170 TCCATTGTACTGGTAAAATAAATTCCA 57.465 29.630 1.40 0.00 37.57 3.53
2986 3725 9.581099 CCATTGTACTGGTAAAATAAATTCCAC 57.419 33.333 0.00 0.00 0.00 4.02
3017 3756 5.560966 AAAAGCTCGTTGTCTTCTTTTCA 57.439 34.783 0.00 0.00 33.27 2.69
3018 3757 4.802876 AAGCTCGTTGTCTTCTTTTCAG 57.197 40.909 0.00 0.00 0.00 3.02
3019 3758 4.060038 AGCTCGTTGTCTTCTTTTCAGA 57.940 40.909 0.00 0.00 0.00 3.27
3020 3759 4.442706 AGCTCGTTGTCTTCTTTTCAGAA 58.557 39.130 0.00 0.00 36.62 3.02
3021 3760 4.876107 AGCTCGTTGTCTTCTTTTCAGAAA 59.124 37.500 0.00 0.00 38.63 2.52
3022 3761 5.354234 AGCTCGTTGTCTTCTTTTCAGAAAA 59.646 36.000 8.09 8.09 38.63 2.29
3023 3762 6.027749 GCTCGTTGTCTTCTTTTCAGAAAAA 58.972 36.000 9.63 0.00 38.63 1.94
3056 3795 9.840427 AAAAATCGGTCAAAATAGTGTGAATAG 57.160 29.630 0.00 0.00 0.00 1.73
3057 3796 8.561738 AAATCGGTCAAAATAGTGTGAATAGT 57.438 30.769 0.00 0.00 0.00 2.12
3058 3797 6.961359 TCGGTCAAAATAGTGTGAATAGTG 57.039 37.500 0.00 0.00 0.00 2.74
3059 3798 6.693466 TCGGTCAAAATAGTGTGAATAGTGA 58.307 36.000 0.00 0.00 0.00 3.41
3060 3799 6.588756 TCGGTCAAAATAGTGTGAATAGTGAC 59.411 38.462 0.00 0.00 33.70 3.67
3061 3800 6.183360 CGGTCAAAATAGTGTGAATAGTGACC 60.183 42.308 8.60 8.60 45.82 4.02
3062 3801 6.879458 GGTCAAAATAGTGTGAATAGTGACCT 59.121 38.462 10.91 0.00 45.82 3.85
3063 3802 8.038944 GGTCAAAATAGTGTGAATAGTGACCTA 58.961 37.037 10.91 0.00 45.82 3.08
3064 3803 9.601217 GTCAAAATAGTGTGAATAGTGACCTAT 57.399 33.333 0.00 0.00 35.33 2.57
3071 3810 8.478775 AGTGTGAATAGTGACCTATAATAGCA 57.521 34.615 0.00 0.00 32.57 3.49
3072 3811 8.924303 AGTGTGAATAGTGACCTATAATAGCAA 58.076 33.333 0.00 0.00 32.57 3.91
3073 3812 9.542462 GTGTGAATAGTGACCTATAATAGCAAA 57.458 33.333 0.00 0.00 32.57 3.68
3104 3843 2.861462 TTTTTGCCCTGAAGTCAACG 57.139 45.000 0.00 0.00 0.00 4.10
3105 3844 0.383949 TTTTGCCCTGAAGTCAACGC 59.616 50.000 0.00 0.00 0.00 4.84
3106 3845 0.465460 TTTGCCCTGAAGTCAACGCT 60.465 50.000 0.00 0.00 0.00 5.07
3107 3846 0.394938 TTGCCCTGAAGTCAACGCTA 59.605 50.000 0.00 0.00 0.00 4.26
3108 3847 0.037326 TGCCCTGAAGTCAACGCTAG 60.037 55.000 0.00 0.00 0.00 3.42
3109 3848 0.037232 GCCCTGAAGTCAACGCTAGT 60.037 55.000 0.00 0.00 0.00 2.57
3110 3849 1.608283 GCCCTGAAGTCAACGCTAGTT 60.608 52.381 0.00 0.00 42.15 2.24
3111 3850 2.767505 CCCTGAAGTCAACGCTAGTTT 58.232 47.619 0.00 0.00 38.79 2.66
3112 3851 3.139077 CCCTGAAGTCAACGCTAGTTTT 58.861 45.455 0.00 0.00 38.79 2.43
3113 3852 4.312443 CCCTGAAGTCAACGCTAGTTTTA 58.688 43.478 0.00 0.00 38.79 1.52
3114 3853 4.935808 CCCTGAAGTCAACGCTAGTTTTAT 59.064 41.667 0.00 0.00 38.79 1.40
3115 3854 6.103997 CCCTGAAGTCAACGCTAGTTTTATA 58.896 40.000 0.00 0.00 38.79 0.98
3116 3855 6.761714 CCCTGAAGTCAACGCTAGTTTTATAT 59.238 38.462 0.00 0.00 38.79 0.86
3117 3856 7.280205 CCCTGAAGTCAACGCTAGTTTTATATT 59.720 37.037 0.00 0.00 38.79 1.28
3118 3857 8.328864 CCTGAAGTCAACGCTAGTTTTATATTC 58.671 37.037 0.00 0.00 38.79 1.75
3119 3858 7.891782 TGAAGTCAACGCTAGTTTTATATTCG 58.108 34.615 0.00 0.00 38.79 3.34
3120 3859 7.543172 TGAAGTCAACGCTAGTTTTATATTCGT 59.457 33.333 0.00 0.00 38.79 3.85
3121 3860 7.218145 AGTCAACGCTAGTTTTATATTCGTG 57.782 36.000 0.00 0.00 38.79 4.35
3122 3861 7.031372 AGTCAACGCTAGTTTTATATTCGTGA 58.969 34.615 0.00 0.00 38.79 4.35
3123 3862 7.543172 AGTCAACGCTAGTTTTATATTCGTGAA 59.457 33.333 0.00 0.00 38.79 3.18
3124 3863 8.164153 GTCAACGCTAGTTTTATATTCGTGAAA 58.836 33.333 0.00 0.00 38.79 2.69
3125 3864 8.875803 TCAACGCTAGTTTTATATTCGTGAAAT 58.124 29.630 0.00 0.00 38.79 2.17
3126 3865 9.485591 CAACGCTAGTTTTATATTCGTGAAATT 57.514 29.630 0.00 0.00 38.79 1.82
3188 3927 8.846943 AAAAGAACTTCCAAACATTTTTGACT 57.153 26.923 5.90 0.00 44.38 3.41
3189 3928 8.846943 AAAGAACTTCCAAACATTTTTGACTT 57.153 26.923 5.90 0.44 44.38 3.01
3190 3929 8.846943 AAGAACTTCCAAACATTTTTGACTTT 57.153 26.923 5.90 0.00 44.38 2.66
3191 3930 8.846943 AGAACTTCCAAACATTTTTGACTTTT 57.153 26.923 5.90 0.00 44.38 2.27
3192 3931 8.935844 AGAACTTCCAAACATTTTTGACTTTTC 58.064 29.630 5.90 4.01 44.38 2.29
3193 3932 8.846943 AACTTCCAAACATTTTTGACTTTTCT 57.153 26.923 5.90 0.00 44.38 2.52
3194 3933 9.936759 AACTTCCAAACATTTTTGACTTTTCTA 57.063 25.926 5.90 0.00 44.38 2.10
3243 3982 5.511363 TGTATATACACCCCAAACCAAAGG 58.489 41.667 11.62 0.00 0.00 3.11
3356 4095 2.905085 TGGAAATAACCGTCCTACACCA 59.095 45.455 0.00 0.00 34.77 4.17
3357 4096 3.055675 TGGAAATAACCGTCCTACACCAG 60.056 47.826 0.00 0.00 34.77 4.00
3385 4124 2.100989 AGACCTAGCGAGAAATTCCGT 58.899 47.619 0.00 0.00 0.00 4.69
3393 4132 5.209818 AGCGAGAAATTCCGTCCATATTA 57.790 39.130 5.94 0.00 0.00 0.98
3532 4273 7.389232 TGACCATGATCGATTTATATTGCTCT 58.611 34.615 0.00 0.00 0.00 4.09
3554 4295 7.097006 GCTCTTGTTTATTTGAGTTTCAACGAC 60.097 37.037 0.00 0.00 35.89 4.34
3619 4363 8.896320 TTCAGTGTAAGTTTATGTGCTTTCTA 57.104 30.769 0.00 0.00 0.00 2.10
3625 4369 7.934665 TGTAAGTTTATGTGCTTTCTACTTCCA 59.065 33.333 0.00 0.00 0.00 3.53
3627 4371 6.534634 AGTTTATGTGCTTTCTACTTCCAGT 58.465 36.000 0.00 0.00 0.00 4.00
3640 4384 6.640518 TCTACTTCCAGTTATTTTGCTCGAT 58.359 36.000 0.00 0.00 0.00 3.59
3678 4422 4.587262 GGGAAACACACAAAAGATACCCTT 59.413 41.667 0.00 0.00 36.47 3.95
3683 4427 8.472007 AAACACACAAAAGATACCCTTAATCA 57.528 30.769 0.00 0.00 34.00 2.57
3712 4464 8.056400 ACATGCCCTAAAATTGTGGTTATACTA 58.944 33.333 0.00 0.00 0.00 1.82
3769 4521 0.107993 AGCGATGTACATGCAGCAGT 60.108 50.000 23.27 1.91 0.00 4.40
3870 4622 0.745486 CAAGTGCGGAGATGATGGCA 60.745 55.000 0.00 0.00 0.00 4.92
3926 4678 2.571653 TGTACTACCAGGCAGCATCTTT 59.428 45.455 0.00 0.00 0.00 2.52
3951 4703 5.659440 ACAACTCCAACACTCAACAAATT 57.341 34.783 0.00 0.00 0.00 1.82
3953 4705 6.099341 ACAACTCCAACACTCAACAAATTTC 58.901 36.000 0.00 0.00 0.00 2.17
3966 4718 2.549754 ACAAATTTCTGTGCTCCAGTCG 59.450 45.455 4.27 0.00 42.19 4.18
3967 4719 2.549754 CAAATTTCTGTGCTCCAGTCGT 59.450 45.455 4.27 0.00 42.19 4.34
3968 4720 2.550830 ATTTCTGTGCTCCAGTCGTT 57.449 45.000 4.27 0.00 42.19 3.85
4003 4755 4.735132 GCTACGGTGCGCCTGACA 62.735 66.667 15.69 1.63 0.00 3.58
4014 4766 1.330655 CGCCTGACACCTACTCCCAT 61.331 60.000 0.00 0.00 0.00 4.00
4033 4785 2.040544 CGCCCCGTGCTTCTGAATT 61.041 57.895 0.00 0.00 38.05 2.17
4131 4883 1.654954 CGTCCGGGTCGATCTCTTGT 61.655 60.000 7.97 0.00 0.00 3.16
4143 4895 1.169577 TCTCTTGTGAGACGGAGAGC 58.830 55.000 0.00 0.00 43.73 4.09
4148 4900 2.680352 TGAGACGGAGAGCCCCAC 60.680 66.667 0.00 0.00 0.00 4.61
4151 4903 4.131088 GACGGAGAGCCCCACGAC 62.131 72.222 0.00 0.00 0.00 4.34
4160 4912 3.657350 CCCCACGACCCCCAACAT 61.657 66.667 0.00 0.00 0.00 2.71
4198 4950 6.540189 CGATCTATGAATTCTTTGGTGAAGGT 59.460 38.462 7.05 0.00 35.98 3.50
4445 5223 3.874392 AGGTGCATGTTCTATTTTGGC 57.126 42.857 0.00 0.00 0.00 4.52
4497 6565 0.667993 CATGGGCGTGAAACAGTTGT 59.332 50.000 0.00 0.00 35.74 3.32
4512 6580 8.681806 TGAAACAGTTGTCAATGTTCTCAATAA 58.318 29.630 11.37 0.00 38.66 1.40
4528 6596 9.016438 GTTCTCAATAAATTTTAGGTACCACCA 57.984 33.333 15.94 0.00 41.95 4.17
4574 6643 6.405278 TCCTTTTCTTCTTTTAAAGGCCTG 57.595 37.500 5.69 0.00 44.80 4.85
4621 6690 4.951254 TGTCTACCGATGTTTTGTTCTCA 58.049 39.130 0.00 0.00 0.00 3.27
4627 6696 4.638421 ACCGATGTTTTGTTCTCACTTGAA 59.362 37.500 0.00 0.00 0.00 2.69
4663 6732 3.054582 TGGGTACACACAAACTACAACCA 60.055 43.478 0.00 0.00 0.00 3.67
4667 6736 4.216411 ACACACAAACTACAACCACTCT 57.784 40.909 0.00 0.00 0.00 3.24
4709 6778 5.915175 ACTCGGAGGTGTATAGAATTTTCC 58.085 41.667 10.23 0.00 0.00 3.13
4763 6832 8.776680 TCGATTAGTTGTTTAAGTCAAAAAGC 57.223 30.769 0.00 0.00 0.00 3.51
4764 6833 8.399425 TCGATTAGTTGTTTAAGTCAAAAAGCA 58.601 29.630 0.00 0.00 0.00 3.91
4769 6838 8.770438 AGTTGTTTAAGTCAAAAAGCATGAAA 57.230 26.923 0.00 0.00 0.00 2.69
4776 6845 5.663456 AGTCAAAAAGCATGAAACACACAT 58.337 33.333 0.00 0.00 0.00 3.21
4797 6866 7.460296 CACATAAGCGTATCATGTGTAAACAA 58.540 34.615 6.02 0.00 42.86 2.83
4801 6870 6.494893 AGCGTATCATGTGTAAACAATGTT 57.505 33.333 0.00 0.00 0.00 2.71
4814 6951 7.740346 GTGTAAACAATGTTGACGAGATAAGTG 59.260 37.037 8.92 0.00 0.00 3.16
4822 6959 5.105917 TGTTGACGAGATAAGTGTCATGCTA 60.106 40.000 0.00 0.00 41.80 3.49
4843 6980 8.560355 TGCTAAAGCTCACATTACTATTTTGA 57.440 30.769 3.26 0.00 42.66 2.69
4850 6987 6.672357 GCTCACATTACTATTTTGACCGACAC 60.672 42.308 0.00 0.00 0.00 3.67
4875 7012 5.801380 CCTAAGGTTTTAGGCTGTTACTCA 58.199 41.667 0.00 0.00 46.98 3.41
4878 7015 5.242795 AGGTTTTAGGCTGTTACTCACAT 57.757 39.130 0.00 0.00 33.76 3.21
4880 7017 6.407202 AGGTTTTAGGCTGTTACTCACATAG 58.593 40.000 0.00 0.00 33.76 2.23
4893 7030 9.733556 TGTTACTCACATAGTACCAAATTTCAT 57.266 29.630 0.00 0.00 40.48 2.57
4923 7060 6.731467 TGACCCTTATTAGCTTTGGATTTCT 58.269 36.000 0.00 0.00 0.00 2.52
5003 7140 6.238648 GGCTTGAGCTTAACTTGTCAAAACTA 60.239 38.462 2.66 0.00 41.70 2.24
5112 7252 3.245622 CCCCTTTTAGACCCCTTTGTGAT 60.246 47.826 0.00 0.00 0.00 3.06
5116 7256 4.993705 TTTAGACCCCTTTGTGATGAGT 57.006 40.909 0.00 0.00 0.00 3.41
5138 7278 7.757624 TGAGTCACCTTTTTACACAAACATTTC 59.242 33.333 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.345808 CTGTTGTCGTGGTGGGCG 61.346 66.667 0.00 0.00 0.00 6.13
14 15 2.978010 CCTGTTGTCGTGGTGGGC 60.978 66.667 0.00 0.00 0.00 5.36
15 16 1.891919 CACCTGTTGTCGTGGTGGG 60.892 63.158 0.00 0.00 45.29 4.61
16 17 3.731136 CACCTGTTGTCGTGGTGG 58.269 61.111 0.00 0.00 45.29 4.61
18 19 1.275291 CCTATCACCTGTTGTCGTGGT 59.725 52.381 0.00 0.00 33.87 4.16
19 20 1.548719 TCCTATCACCTGTTGTCGTGG 59.451 52.381 0.00 0.00 0.00 4.94
20 21 3.313012 TTCCTATCACCTGTTGTCGTG 57.687 47.619 0.00 0.00 0.00 4.35
21 22 3.070446 TGTTTCCTATCACCTGTTGTCGT 59.930 43.478 0.00 0.00 0.00 4.34
22 23 3.659786 TGTTTCCTATCACCTGTTGTCG 58.340 45.455 0.00 0.00 0.00 4.35
23 24 6.016276 ACAAATGTTTCCTATCACCTGTTGTC 60.016 38.462 0.00 0.00 0.00 3.18
24 25 5.833131 ACAAATGTTTCCTATCACCTGTTGT 59.167 36.000 0.00 0.00 0.00 3.32
25 26 6.331369 ACAAATGTTTCCTATCACCTGTTG 57.669 37.500 0.00 0.00 0.00 3.33
26 27 5.476945 GGACAAATGTTTCCTATCACCTGTT 59.523 40.000 0.00 0.00 0.00 3.16
27 28 5.010282 GGACAAATGTTTCCTATCACCTGT 58.990 41.667 0.00 0.00 0.00 4.00
28 29 5.256474 AGGACAAATGTTTCCTATCACCTG 58.744 41.667 0.00 0.00 40.70 4.00
29 30 5.520748 AGGACAAATGTTTCCTATCACCT 57.479 39.130 0.00 0.00 40.70 4.00
30 31 6.177610 TGTAGGACAAATGTTTCCTATCACC 58.822 40.000 1.00 0.00 44.57 4.02
31 32 7.552687 TCATGTAGGACAAATGTTTCCTATCAC 59.447 37.037 1.00 0.00 44.57 3.06
32 33 7.629157 TCATGTAGGACAAATGTTTCCTATCA 58.371 34.615 1.00 2.83 44.57 2.15
33 34 8.682936 ATCATGTAGGACAAATGTTTCCTATC 57.317 34.615 1.00 0.00 44.57 2.08
34 35 8.906867 CAATCATGTAGGACAAATGTTTCCTAT 58.093 33.333 1.00 0.00 44.57 2.57
80 81 1.650363 CACGGTCAAACGGTTTCCC 59.350 57.895 2.51 6.01 38.39 3.97
99 100 3.617540 ATTCGCTCATCTAGTGACTCG 57.382 47.619 0.00 0.00 44.38 4.18
127 128 1.504275 ATGGCCAGTTCTGCTCCCTT 61.504 55.000 13.05 0.00 0.00 3.95
201 202 7.829725 AGACCACACATATAGTAACGTACAAA 58.170 34.615 0.00 0.00 0.00 2.83
221 222 7.100409 TCGTTTGTGTGATAATGATAAGACCA 58.900 34.615 0.00 0.00 0.00 4.02
246 249 2.049433 GCTACGTGTCGTGCACCT 60.049 61.111 12.15 0.00 44.97 4.00
344 349 0.322456 TGACAAGTGGGCCAGTATGC 60.322 55.000 15.67 7.28 31.97 3.14
421 428 4.700365 GCGCGGTCAAAAGGTGCC 62.700 66.667 8.83 0.00 0.00 5.01
480 489 4.329545 GAAGGGGCGTGGAGTGCA 62.330 66.667 0.00 0.00 0.00 4.57
592 700 4.270084 CCGTGCTTGTGTGATAACGATATT 59.730 41.667 0.00 0.00 33.03 1.28
593 701 3.802139 CCGTGCTTGTGTGATAACGATAT 59.198 43.478 0.00 0.00 33.03 1.63
618 726 1.448540 GCCAGCTATGTGTGTCGCT 60.449 57.895 0.00 0.00 0.00 4.93
622 730 0.950555 CGTGTGCCAGCTATGTGTGT 60.951 55.000 0.00 0.00 0.00 3.72
623 731 0.670239 TCGTGTGCCAGCTATGTGTG 60.670 55.000 0.00 0.00 0.00 3.82
657 765 5.392057 GCTAACATAAGTCAAAGAAGCACCC 60.392 44.000 0.00 0.00 0.00 4.61
876 984 1.132332 TGGAGGGTAAGGGTTTGGAGA 60.132 52.381 0.00 0.00 0.00 3.71
927 1037 1.741993 GTTTGTGTGCGCTTGTAGTG 58.258 50.000 9.73 0.00 0.00 2.74
1195 1324 1.202417 CGCGGTCACCTGATGTATCTT 60.202 52.381 0.00 0.00 0.00 2.40
1250 1379 0.951040 CTGGAACCAGTGGAAGACGC 60.951 60.000 18.40 0.00 39.10 5.19
1287 1416 2.604686 TGCTTCTCCCTCTGGCGT 60.605 61.111 0.00 0.00 0.00 5.68
1640 1800 0.535780 CCAGCTTTGACCAGCAGACA 60.536 55.000 0.00 0.00 42.84 3.41
1775 1992 3.220447 GCAACCTTGTGCATGCATT 57.780 47.368 25.64 10.90 44.29 3.56
1838 2228 1.216064 ATGGAGCTACCTTGCATCCA 58.784 50.000 5.46 5.46 41.10 3.41
1858 2248 3.684788 CAGGTGCTAGTACAAGCGAAAAT 59.315 43.478 13.26 0.00 45.85 1.82
1884 2274 0.178990 AGACTTGAACTTGGGTGGGC 60.179 55.000 0.00 0.00 0.00 5.36
1898 2288 2.022129 CGCGTCAAAGCCGAGACTT 61.022 57.895 0.00 0.00 32.68 3.01
1905 2295 2.047560 AGTACCCGCGTCAAAGCC 60.048 61.111 4.92 0.00 0.00 4.35
1914 2304 0.738762 GAAACTTCCCGAGTACCCGC 60.739 60.000 0.00 0.00 37.72 6.13
1918 2308 6.705863 TTATAGGAGAAACTTCCCGAGTAC 57.294 41.667 0.00 0.00 37.72 2.73
1920 2310 6.616237 TTTTATAGGAGAAACTTCCCGAGT 57.384 37.500 0.00 0.00 41.47 4.18
1957 2347 4.948062 AAAGACTAACCCAAGGGCTAAT 57.052 40.909 4.70 0.00 39.32 1.73
1980 2370 1.271707 GGCAGGTGCTAGTACCCAAAA 60.272 52.381 24.66 0.00 41.83 2.44
1984 2374 0.546598 ATTGGCAGGTGCTAGTACCC 59.453 55.000 24.66 11.51 41.83 3.69
2001 2391 3.347216 AGTGCTGGCAAAGACGATAATT 58.653 40.909 0.00 0.00 0.00 1.40
2002 2392 2.991250 AGTGCTGGCAAAGACGATAAT 58.009 42.857 0.00 0.00 0.00 1.28
2105 2495 0.837272 GGGGTGATGGCTACTGCTTA 59.163 55.000 0.00 0.00 39.59 3.09
2120 2510 4.752879 CGGACGATGTTGCGGGGT 62.753 66.667 0.00 0.00 35.12 4.95
2140 2530 2.062361 TTTGCAGTGACGGCTTGCAG 62.062 55.000 18.07 0.00 36.82 4.41
2144 2534 1.001378 GACATTTTGCAGTGACGGCTT 60.001 47.619 9.44 0.00 0.00 4.35
2152 2542 1.748493 ACAACGGTGACATTTTGCAGT 59.252 42.857 7.88 0.00 0.00 4.40
2165 2588 0.375803 GCAACTTTGACGACAACGGT 59.624 50.000 8.73 0.00 44.46 4.83
2207 2630 1.186917 TCGTGAGCCTCCGGGTTTTA 61.187 55.000 0.00 0.00 31.55 1.52
2227 2650 1.679311 CTGTGAGCAAGGCTGGGTA 59.321 57.895 0.00 0.00 39.88 3.69
2264 2687 1.142097 TGACGACCGCAACAGACAA 59.858 52.632 0.00 0.00 0.00 3.18
2265 2688 1.590525 GTGACGACCGCAACAGACA 60.591 57.895 0.00 0.00 0.00 3.41
2344 2767 3.034635 ACCAACACTGTCAGAGAAGACT 58.965 45.455 6.91 0.00 39.27 3.24
2359 2782 3.246112 AGGGGCGCTACACCAACA 61.246 61.111 7.64 0.00 0.00 3.33
2361 2784 4.715523 GCAGGGGCGCTACACCAA 62.716 66.667 7.64 0.00 0.00 3.67
2390 2813 1.077212 GGAGCCATGCACCATCACT 60.077 57.895 0.00 0.00 39.08 3.41
2411 2837 0.521867 CGTTGTTGCATGGCATCTCG 60.522 55.000 0.00 0.00 38.76 4.04
2456 2882 3.512724 CCAATTCCTCTCCAAGCAATTGT 59.487 43.478 7.40 0.00 34.13 2.71
2459 2885 3.245371 TGTCCAATTCCTCTCCAAGCAAT 60.245 43.478 0.00 0.00 0.00 3.56
2460 2886 2.108075 TGTCCAATTCCTCTCCAAGCAA 59.892 45.455 0.00 0.00 0.00 3.91
2495 2921 7.824289 CCCTTTTCCCCTAATTGAATTTTCTTC 59.176 37.037 0.00 0.00 0.00 2.87
2510 2936 0.704664 GACACATCCCCTTTTCCCCT 59.295 55.000 0.00 0.00 0.00 4.79
2522 2948 3.577649 TCGTCTTCTTCCTGACACATC 57.422 47.619 0.00 0.00 33.18 3.06
2530 2956 0.457851 CGAGGCATCGTCTTCTTCCT 59.542 55.000 13.51 0.00 44.09 3.36
2545 2971 1.269309 CGCAACCTTATCTCCTCGAGG 60.269 57.143 26.32 26.32 35.39 4.63
2669 3131 2.205074 CACTCTTCTGACCACACACAC 58.795 52.381 0.00 0.00 0.00 3.82
2672 3134 2.905075 CAACACTCTTCTGACCACACA 58.095 47.619 0.00 0.00 0.00 3.72
2675 3137 0.861837 CGCAACACTCTTCTGACCAC 59.138 55.000 0.00 0.00 0.00 4.16
2676 3138 0.464036 ACGCAACACTCTTCTGACCA 59.536 50.000 0.00 0.00 0.00 4.02
2695 3157 2.248135 AACGTTTGATCGTGCGGCA 61.248 52.632 0.00 0.00 43.38 5.69
2730 3192 5.448360 GCAAGATGAGAAGGAAAAGGATTCG 60.448 44.000 0.00 0.00 0.00 3.34
2760 3222 0.446616 CACTCTACGCAGCGACACTA 59.553 55.000 24.65 1.70 0.00 2.74
2836 3575 3.515562 CCCTCTCAGGATACATAGCCTT 58.484 50.000 0.00 0.00 39.48 4.35
2842 3581 1.869648 AGGTCCCCTCTCAGGATACAT 59.130 52.381 0.00 0.00 37.67 2.29
2843 3582 1.319947 AGGTCCCCTCTCAGGATACA 58.680 55.000 0.00 0.00 37.67 2.29
2844 3583 2.480642 AAGGTCCCCTCTCAGGATAC 57.519 55.000 0.00 0.00 37.67 2.24
2845 3584 3.115390 CAAAAGGTCCCCTCTCAGGATA 58.885 50.000 0.00 0.00 37.67 2.59
2846 3585 1.918957 CAAAAGGTCCCCTCTCAGGAT 59.081 52.381 0.00 0.00 37.67 3.24
2847 3586 1.362224 CAAAAGGTCCCCTCTCAGGA 58.638 55.000 0.00 0.00 37.67 3.86
2848 3587 1.068121 ACAAAAGGTCCCCTCTCAGG 58.932 55.000 0.00 0.00 30.89 3.86
2849 3588 2.553247 GGAACAAAAGGTCCCCTCTCAG 60.553 54.545 0.00 0.00 30.89 3.35
2850 3589 1.423921 GGAACAAAAGGTCCCCTCTCA 59.576 52.381 0.00 0.00 30.89 3.27
2851 3590 1.423921 TGGAACAAAAGGTCCCCTCTC 59.576 52.381 0.00 0.00 31.92 3.20
2852 3591 1.529744 TGGAACAAAAGGTCCCCTCT 58.470 50.000 0.00 0.00 31.92 3.69
2938 3677 9.844257 AATGGAAGGTCATGTTTATTTCAAAAA 57.156 25.926 0.00 0.00 0.00 1.94
2939 3678 9.270640 CAATGGAAGGTCATGTTTATTTCAAAA 57.729 29.630 0.00 0.00 0.00 2.44
2940 3679 8.428063 ACAATGGAAGGTCATGTTTATTTCAAA 58.572 29.630 0.00 0.00 0.00 2.69
2941 3680 7.961351 ACAATGGAAGGTCATGTTTATTTCAA 58.039 30.769 0.00 0.00 0.00 2.69
2942 3681 7.537596 ACAATGGAAGGTCATGTTTATTTCA 57.462 32.000 0.00 0.00 0.00 2.69
2943 3682 8.739972 AGTACAATGGAAGGTCATGTTTATTTC 58.260 33.333 0.00 0.00 0.00 2.17
2944 3683 8.522830 CAGTACAATGGAAGGTCATGTTTATTT 58.477 33.333 0.00 0.00 0.00 1.40
2945 3684 7.122650 CCAGTACAATGGAAGGTCATGTTTATT 59.877 37.037 0.00 0.00 43.57 1.40
2946 3685 6.603201 CCAGTACAATGGAAGGTCATGTTTAT 59.397 38.462 0.00 0.00 43.57 1.40
2947 3686 5.943416 CCAGTACAATGGAAGGTCATGTTTA 59.057 40.000 0.00 0.00 43.57 2.01
2948 3687 4.766891 CCAGTACAATGGAAGGTCATGTTT 59.233 41.667 0.00 0.00 43.57 2.83
2949 3688 4.202567 ACCAGTACAATGGAAGGTCATGTT 60.203 41.667 8.09 0.00 43.57 2.71
2950 3689 3.330701 ACCAGTACAATGGAAGGTCATGT 59.669 43.478 8.09 0.00 43.57 3.21
2951 3690 3.955471 ACCAGTACAATGGAAGGTCATG 58.045 45.455 8.09 0.00 43.57 3.07
2952 3691 5.772393 TTACCAGTACAATGGAAGGTCAT 57.228 39.130 8.09 0.00 43.57 3.06
2953 3692 5.570205 TTTACCAGTACAATGGAAGGTCA 57.430 39.130 8.09 0.00 43.57 4.02
2954 3693 8.570068 TTATTTTACCAGTACAATGGAAGGTC 57.430 34.615 8.09 0.00 43.57 3.85
2955 3694 8.943594 TTTATTTTACCAGTACAATGGAAGGT 57.056 30.769 8.09 0.00 43.57 3.50
2959 3698 9.535170 TGGAATTTATTTTACCAGTACAATGGA 57.465 29.630 8.09 0.00 43.57 3.41
2960 3699 9.581099 GTGGAATTTATTTTACCAGTACAATGG 57.419 33.333 0.00 0.00 46.47 3.16
2994 3733 5.949735 TGAAAAGAAGACAACGAGCTTTTT 58.050 33.333 0.00 0.00 38.47 1.94
2995 3734 5.354234 TCTGAAAAGAAGACAACGAGCTTTT 59.646 36.000 0.00 0.00 40.35 2.27
2996 3735 4.876107 TCTGAAAAGAAGACAACGAGCTTT 59.124 37.500 0.00 0.00 0.00 3.51
2997 3736 4.442706 TCTGAAAAGAAGACAACGAGCTT 58.557 39.130 0.00 0.00 0.00 3.74
2998 3737 4.060038 TCTGAAAAGAAGACAACGAGCT 57.940 40.909 0.00 0.00 0.00 4.09
2999 3738 4.795970 TTCTGAAAAGAAGACAACGAGC 57.204 40.909 0.00 0.00 0.00 5.03
3030 3769 9.840427 CTATTCACACTATTTTGACCGATTTTT 57.160 29.630 0.00 0.00 0.00 1.94
3031 3770 9.010029 ACTATTCACACTATTTTGACCGATTTT 57.990 29.630 0.00 0.00 0.00 1.82
3032 3771 8.450964 CACTATTCACACTATTTTGACCGATTT 58.549 33.333 0.00 0.00 0.00 2.17
3033 3772 7.822334 TCACTATTCACACTATTTTGACCGATT 59.178 33.333 0.00 0.00 0.00 3.34
3034 3773 7.277981 GTCACTATTCACACTATTTTGACCGAT 59.722 37.037 0.00 0.00 0.00 4.18
3035 3774 6.588756 GTCACTATTCACACTATTTTGACCGA 59.411 38.462 0.00 0.00 0.00 4.69
3036 3775 6.183360 GGTCACTATTCACACTATTTTGACCG 60.183 42.308 0.00 0.00 40.70 4.79
3037 3776 7.073342 GGTCACTATTCACACTATTTTGACC 57.927 40.000 0.00 0.00 42.64 4.02
3038 3777 7.907214 AGGTCACTATTCACACTATTTTGAC 57.093 36.000 0.00 0.00 0.00 3.18
3045 3784 9.582648 TGCTATTATAGGTCACTATTCACACTA 57.417 33.333 1.12 0.00 40.35 2.74
3046 3785 8.478775 TGCTATTATAGGTCACTATTCACACT 57.521 34.615 1.12 0.00 40.35 3.55
3047 3786 9.542462 TTTGCTATTATAGGTCACTATTCACAC 57.458 33.333 1.12 0.00 40.35 3.82
3085 3824 1.202359 GCGTTGACTTCAGGGCAAAAA 60.202 47.619 0.00 0.00 45.57 1.94
3086 3825 0.383949 GCGTTGACTTCAGGGCAAAA 59.616 50.000 0.00 0.00 45.57 2.44
3087 3826 0.465460 AGCGTTGACTTCAGGGCAAA 60.465 50.000 6.42 0.00 45.57 3.68
3088 3827 0.394938 TAGCGTTGACTTCAGGGCAA 59.605 50.000 6.42 0.00 41.27 4.52
3089 3828 0.037326 CTAGCGTTGACTTCAGGGCA 60.037 55.000 6.42 0.00 0.00 5.36
3090 3829 0.037232 ACTAGCGTTGACTTCAGGGC 60.037 55.000 0.00 0.00 0.00 5.19
3091 3830 2.457366 AACTAGCGTTGACTTCAGGG 57.543 50.000 0.00 0.00 30.67 4.45
3092 3831 7.772332 ATATAAAACTAGCGTTGACTTCAGG 57.228 36.000 0.00 0.00 32.65 3.86
3093 3832 8.050750 CGAATATAAAACTAGCGTTGACTTCAG 58.949 37.037 0.00 0.00 32.65 3.02
3094 3833 7.543172 ACGAATATAAAACTAGCGTTGACTTCA 59.457 33.333 0.00 0.00 32.65 3.02
3095 3834 7.839837 CACGAATATAAAACTAGCGTTGACTTC 59.160 37.037 0.00 0.00 32.65 3.01
3096 3835 7.543172 TCACGAATATAAAACTAGCGTTGACTT 59.457 33.333 0.00 0.00 32.65 3.01
3097 3836 7.031372 TCACGAATATAAAACTAGCGTTGACT 58.969 34.615 0.00 0.00 32.65 3.41
3098 3837 7.213252 TCACGAATATAAAACTAGCGTTGAC 57.787 36.000 0.00 0.00 32.65 3.18
3099 3838 7.815398 TTCACGAATATAAAACTAGCGTTGA 57.185 32.000 0.00 0.00 32.65 3.18
3100 3839 9.485591 AATTTCACGAATATAAAACTAGCGTTG 57.514 29.630 0.00 0.00 32.65 4.10
3162 3901 9.283768 AGTCAAAAATGTTTGGAAGTTCTTTTT 57.716 25.926 8.51 4.32 43.70 1.94
3163 3902 8.846943 AGTCAAAAATGTTTGGAAGTTCTTTT 57.153 26.923 8.51 0.00 43.70 2.27
3164 3903 8.846943 AAGTCAAAAATGTTTGGAAGTTCTTT 57.153 26.923 8.51 0.00 43.70 2.52
3165 3904 8.846943 AAAGTCAAAAATGTTTGGAAGTTCTT 57.153 26.923 8.51 2.53 43.70 2.52
3166 3905 8.846943 AAAAGTCAAAAATGTTTGGAAGTTCT 57.153 26.923 8.51 0.00 43.70 3.01
3167 3906 8.935844 AGAAAAGTCAAAAATGTTTGGAAGTTC 58.064 29.630 8.51 7.75 43.70 3.01
3168 3907 8.846943 AGAAAAGTCAAAAATGTTTGGAAGTT 57.153 26.923 8.51 0.00 43.70 2.66
3220 3959 5.511363 CCTTTGGTTTGGGGTGTATATACA 58.489 41.667 11.62 11.62 0.00 2.29
3221 3960 4.891168 CCCTTTGGTTTGGGGTGTATATAC 59.109 45.833 5.89 5.89 39.76 1.47
3222 3961 5.132043 CCCTTTGGTTTGGGGTGTATATA 57.868 43.478 0.00 0.00 39.76 0.86
3223 3962 3.989056 CCCTTTGGTTTGGGGTGTATAT 58.011 45.455 0.00 0.00 39.76 0.86
3224 3963 3.459710 CCCTTTGGTTTGGGGTGTATA 57.540 47.619 0.00 0.00 39.76 1.47
3225 3964 2.319025 CCCTTTGGTTTGGGGTGTAT 57.681 50.000 0.00 0.00 39.76 2.29
3226 3965 3.852558 CCCTTTGGTTTGGGGTGTA 57.147 52.632 0.00 0.00 39.76 2.90
3227 3966 4.718143 CCCTTTGGTTTGGGGTGT 57.282 55.556 0.00 0.00 39.76 4.16
3230 3969 2.569853 GGAAATACCCTTTGGTTTGGGG 59.430 50.000 2.96 0.00 44.75 4.96
3231 3970 3.973206 GGAAATACCCTTTGGTTTGGG 57.027 47.619 0.00 0.00 44.75 4.12
3243 3982 4.074970 CAGCAGGATACATGGGAAATACC 58.925 47.826 0.00 0.00 41.41 2.73
3244 3983 3.503748 GCAGCAGGATACATGGGAAATAC 59.496 47.826 0.00 0.00 41.41 1.89
3245 3984 3.395607 AGCAGCAGGATACATGGGAAATA 59.604 43.478 0.00 0.00 41.41 1.40
3246 3985 2.176364 AGCAGCAGGATACATGGGAAAT 59.824 45.455 0.00 0.00 41.41 2.17
3247 3986 1.565759 AGCAGCAGGATACATGGGAAA 59.434 47.619 0.00 0.00 41.41 3.13
3248 3987 1.134007 CAGCAGCAGGATACATGGGAA 60.134 52.381 0.00 0.00 41.41 3.97
3249 3988 0.471191 CAGCAGCAGGATACATGGGA 59.529 55.000 0.00 0.00 41.41 4.37
3250 3989 1.170919 GCAGCAGCAGGATACATGGG 61.171 60.000 0.00 0.00 41.58 4.00
3251 3990 0.179026 AGCAGCAGCAGGATACATGG 60.179 55.000 3.17 0.00 45.49 3.66
3252 3991 2.141517 GTAGCAGCAGCAGGATACATG 58.858 52.381 3.17 0.00 45.49 3.21
3284 4023 6.578944 TGTACAGTGCAGAAAAGACTAAGAA 58.421 36.000 0.00 0.00 0.00 2.52
3286 4025 6.619446 GCATGTACAGTGCAGAAAAGACTAAG 60.619 42.308 19.12 0.00 42.08 2.18
3290 4029 3.250762 TGCATGTACAGTGCAGAAAAGAC 59.749 43.478 21.44 0.53 46.76 3.01
3316 4055 2.288642 ATCCATTCTGGGGCATGCGT 62.289 55.000 12.44 0.00 38.32 5.24
3340 4079 0.458669 CGCTGGTGTAGGACGGTTAT 59.541 55.000 0.00 0.00 0.00 1.89
3356 4095 2.701780 CGCTAGGTCTGGACACGCT 61.702 63.158 3.10 0.00 0.00 5.07
3357 4096 2.202623 CGCTAGGTCTGGACACGC 60.203 66.667 3.10 1.56 0.00 5.34
3423 4164 0.939577 CACGTGTCTTCCCACTGTCG 60.940 60.000 7.58 0.00 33.07 4.35
3432 4173 1.237285 ATTGGCTGGCACGTGTCTTC 61.237 55.000 22.43 12.35 0.00 2.87
3434 4175 1.672356 GATTGGCTGGCACGTGTCT 60.672 57.895 22.43 0.00 0.00 3.41
3438 4179 2.360350 CTGGATTGGCTGGCACGT 60.360 61.111 2.29 0.00 0.00 4.49
3532 4273 6.748198 GGTGTCGTTGAAACTCAAATAAACAA 59.252 34.615 0.00 0.00 38.22 2.83
3538 4279 4.398044 AGTTGGTGTCGTTGAAACTCAAAT 59.602 37.500 0.00 0.00 38.22 2.32
3580 4324 6.590292 ACTTACACTGAATATCCAAACAGACG 59.410 38.462 0.00 0.00 34.88 4.18
3581 4325 7.907214 ACTTACACTGAATATCCAAACAGAC 57.093 36.000 0.00 0.00 34.88 3.51
3640 4384 3.632604 TGTTTCCCGTATTTTGCTCAACA 59.367 39.130 0.00 0.00 0.00 3.33
3678 4422 7.605691 CCACAATTTTAGGGCATGTTTTGATTA 59.394 33.333 0.00 0.00 0.00 1.75
3683 4427 5.303259 ACCACAATTTTAGGGCATGTTTT 57.697 34.783 0.00 0.00 0.00 2.43
3739 4491 3.884169 TGTACATCGCTGCAAGAAAAAC 58.116 40.909 0.00 0.00 34.07 2.43
3769 4521 1.284491 TGGCCCTGAAATGTAGCATGA 59.716 47.619 0.00 0.00 0.00 3.07
3870 4622 1.176527 GTGCCTGTACATTGCCATGT 58.823 50.000 8.64 8.64 46.07 3.21
3926 4678 3.680490 TGTTGAGTGTTGGAGTTGTTCA 58.320 40.909 0.00 0.00 0.00 3.18
3979 4731 4.742201 CGCACCGTAGCTGCTGGT 62.742 66.667 13.43 9.27 36.10 4.00
4003 4755 2.446036 GGGGCGATGGGAGTAGGT 60.446 66.667 0.00 0.00 0.00 3.08
4033 4785 0.475044 GTGGGGTACTGTGGGAACAA 59.525 55.000 0.00 0.00 46.06 2.83
4105 4857 1.601419 ATCGACCCGGACGTTGATGT 61.601 55.000 0.73 0.00 35.85 3.06
4113 4865 0.179134 CACAAGAGATCGACCCGGAC 60.179 60.000 0.73 0.00 0.00 4.79
4116 4868 1.095600 TCTCACAAGAGATCGACCCG 58.904 55.000 0.00 0.00 45.73 5.28
4131 4883 2.680352 GTGGGGCTCTCCGTCTCA 60.680 66.667 0.00 0.00 36.01 3.27
4143 4895 2.302509 TATGTTGGGGGTCGTGGGG 61.303 63.158 0.00 0.00 0.00 4.96
4148 4900 1.742831 CAATGTGTATGTTGGGGGTCG 59.257 52.381 0.00 0.00 0.00 4.79
4160 4912 8.716646 AATTCATAGATCGACAACAATGTGTA 57.283 30.769 0.00 0.00 40.74 2.90
4339 5116 8.969121 TTCAAGTTTATGAAGCAATACACATG 57.031 30.769 0.00 0.00 34.50 3.21
4445 5223 8.390354 TGAATGATACGATGAAACAAGCTAAAG 58.610 33.333 0.00 0.00 0.00 1.85
4558 6627 7.710475 TCATTTCAAACAGGCCTTTAAAAGAAG 59.290 33.333 0.00 0.00 0.00 2.85
4560 6629 7.118496 TCATTTCAAACAGGCCTTTAAAAGA 57.882 32.000 0.00 0.00 0.00 2.52
4621 6690 6.532826 ACCCACATGCATTTTTATTTCAAGT 58.467 32.000 0.00 0.00 0.00 3.16
4627 6696 6.352016 TGTGTACCCACATGCATTTTTATT 57.648 33.333 0.00 0.00 46.45 1.40
4658 6727 3.721087 AGGGGATGTTTAGAGTGGTTG 57.279 47.619 0.00 0.00 0.00 3.77
4663 6732 6.731448 AGTTTCTCTAAGGGGATGTTTAGAGT 59.269 38.462 16.48 0.81 46.64 3.24
4667 6736 5.105064 CCGAGTTTCTCTAAGGGGATGTTTA 60.105 44.000 0.00 0.00 0.00 2.01
4758 6827 4.681025 CGCTTATGTGTGTTTCATGCTTTT 59.319 37.500 0.00 0.00 0.00 2.27
4763 6832 6.105657 TGATACGCTTATGTGTGTTTCATG 57.894 37.500 5.14 0.00 34.97 3.07
4764 6833 6.316140 ACATGATACGCTTATGTGTGTTTCAT 59.684 34.615 0.00 10.89 44.03 2.57
4776 6845 7.603963 ACATTGTTTACACATGATACGCTTA 57.396 32.000 0.00 0.00 31.06 3.09
4797 6866 4.568359 GCATGACACTTATCTCGTCAACAT 59.432 41.667 0.00 0.00 42.53 2.71
4801 6870 5.576447 TTAGCATGACACTTATCTCGTCA 57.424 39.130 0.00 0.00 43.35 4.35
4814 6951 7.721286 ATAGTAATGTGAGCTTTAGCATGAC 57.279 36.000 0.00 0.00 45.16 3.06
4822 6959 6.653320 TCGGTCAAAATAGTAATGTGAGCTTT 59.347 34.615 6.13 0.00 35.18 3.51
4843 6980 3.244318 CCTAAAACCTTAGGTGTGTCGGT 60.244 47.826 3.99 0.00 46.49 4.69
4893 7030 8.887264 TCCAAAGCTAATAAGGGTCAAATTTA 57.113 30.769 0.00 0.00 0.00 1.40
4978 7115 4.568152 TTTGACAAGTTAAGCTCAAGCC 57.432 40.909 0.00 0.00 43.38 4.35
5085 7225 3.536913 AGGGGTCTAAAAGGGGGATTA 57.463 47.619 0.00 0.00 0.00 1.75
5093 7233 5.316987 ACTCATCACAAAGGGGTCTAAAAG 58.683 41.667 0.00 0.00 0.00 2.27
5099 7239 2.859165 TGACTCATCACAAAGGGGTC 57.141 50.000 0.00 0.00 0.00 4.46
5112 7252 6.767524 ATGTTTGTGTAAAAAGGTGACTCA 57.232 33.333 0.00 0.00 42.68 3.41
5116 7256 7.038659 CAGGAAATGTTTGTGTAAAAAGGTGA 58.961 34.615 0.00 0.00 0.00 4.02
5127 7267 3.731652 TCTTGGCAGGAAATGTTTGTG 57.268 42.857 0.00 0.00 0.00 3.33
5138 7278 7.770897 AGATACTACTGTAATTTTCTTGGCAGG 59.229 37.037 0.00 0.00 31.80 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.