Multiple sequence alignment - TraesCS3D01G352600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G352600 chr3D 100.000 4669 0 0 1 4669 463231464 463226796 0.000000e+00 8623.0
1 TraesCS3D01G352600 chr3D 95.804 2812 110 5 1862 4669 463261018 463258211 0.000000e+00 4532.0
2 TraesCS3D01G352600 chr3D 93.939 1683 74 13 1 1669 463200245 463198577 0.000000e+00 2518.0
3 TraesCS3D01G352600 chr3D 88.848 1919 172 16 2769 4669 463379551 463377657 0.000000e+00 2320.0
4 TraesCS3D01G352600 chr3D 86.300 1000 103 16 910 1893 463381907 463380926 0.000000e+00 1057.0
5 TraesCS3D01G352600 chr3D 86.902 878 93 11 1 870 463266453 463265590 0.000000e+00 965.0
6 TraesCS3D01G352600 chr3D 89.271 727 75 3 2051 2774 463380683 463379957 0.000000e+00 907.0
7 TraesCS3D01G352600 chr3D 83.805 883 101 18 910 1777 463261873 463261018 0.000000e+00 800.0
8 TraesCS3D01G352600 chr3D 88.136 354 32 7 429 775 463204657 463204307 3.360000e-111 412.0
9 TraesCS3D01G352600 chr3D 86.207 377 42 4 1 374 463216324 463215955 2.620000e-107 399.0
10 TraesCS3D01G352600 chr3D 85.979 378 42 6 1 374 463249988 463249618 1.220000e-105 394.0
11 TraesCS3D01G352600 chr3D 92.941 170 12 0 1 170 463251001 463250832 1.000000e-61 248.0
12 TraesCS3D01G352600 chr3D 92.771 166 12 0 1879 2044 463380822 463380657 1.680000e-59 241.0
13 TraesCS3D01G352600 chr3A 94.795 1998 100 4 2674 4669 606517255 606515260 0.000000e+00 3110.0
14 TraesCS3D01G352600 chr3A 93.393 1665 91 14 1 1658 606447777 606446125 0.000000e+00 2447.0
15 TraesCS3D01G352600 chr3A 89.158 1402 118 9 2645 4035 606574694 606573316 0.000000e+00 1716.0
16 TraesCS3D01G352600 chr3A 85.299 1653 161 41 131 1766 606519987 606518400 0.000000e+00 1631.0
17 TraesCS3D01G352600 chr3A 85.543 1003 111 18 910 1893 606576260 606575273 0.000000e+00 1018.0
18 TraesCS3D01G352600 chr3A 94.040 453 27 0 2153 2605 606518010 606517558 0.000000e+00 688.0
19 TraesCS3D01G352600 chr3A 87.961 407 35 9 4275 4669 606571718 606571314 7.070000e-128 468.0
20 TraesCS3D01G352600 chr3A 90.032 311 31 0 4032 4342 606572029 606571719 2.020000e-108 403.0
21 TraesCS3D01G352600 chr3A 84.211 304 36 8 75 374 606458474 606458179 7.650000e-73 285.0
22 TraesCS3D01G352600 chr3A 91.061 179 16 0 1879 2057 606575171 606574993 4.670000e-60 243.0
23 TraesCS3D01G352600 chr3A 93.893 131 8 0 1 131 606522296 606522166 1.020000e-46 198.0
24 TraesCS3D01G352600 chr3A 89.091 110 12 0 1821 1930 606518132 606518023 2.270000e-28 137.0
25 TraesCS3D01G352600 chr3A 100.000 51 0 0 1767 1817 606518352 606518302 1.380000e-15 95.3
26 TraesCS3D01G352600 chr3B 93.533 1933 105 13 2518 4436 616646790 616644864 0.000000e+00 2859.0
27 TraesCS3D01G352600 chr3B 91.354 1677 124 20 1 1669 616427975 616426312 0.000000e+00 2274.0
28 TraesCS3D01G352600 chr3B 83.963 873 93 20 910 1766 616647928 616647087 0.000000e+00 793.0
29 TraesCS3D01G352600 chr3B 83.954 779 97 15 1 772 616583696 616582939 0.000000e+00 721.0
30 TraesCS3D01G352600 chr3B 89.961 259 21 4 4412 4669 616639789 616639535 3.480000e-86 329.0
31 TraesCS3D01G352600 chr3B 90.286 175 10 1 1767 1934 616647037 616646863 6.080000e-54 222.0
32 TraesCS3D01G352600 chr5D 81.166 446 70 9 988 1425 108103453 108103892 3.460000e-91 346.0
33 TraesCS3D01G352600 chr5B 81.293 433 68 8 996 1420 118452021 118452448 5.790000e-89 339.0
34 TraesCS3D01G352600 chr5A 79.819 441 67 16 988 1419 111588734 111589161 7.590000e-78 302.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G352600 chr3D 463226796 463231464 4668 True 8623.000000 8623 100.000000 1 4669 1 chr3D.!!$R4 4668
1 TraesCS3D01G352600 chr3D 463198577 463200245 1668 True 2518.000000 2518 93.939000 1 1669 1 chr3D.!!$R1 1668
2 TraesCS3D01G352600 chr3D 463258211 463266453 8242 True 2099.000000 4532 88.837000 1 4669 3 chr3D.!!$R6 4668
3 TraesCS3D01G352600 chr3D 463377657 463381907 4250 True 1131.250000 2320 89.297500 910 4669 4 chr3D.!!$R7 3759
4 TraesCS3D01G352600 chr3D 463249618 463251001 1383 True 321.000000 394 89.460000 1 374 2 chr3D.!!$R5 373
5 TraesCS3D01G352600 chr3A 606446125 606447777 1652 True 2447.000000 2447 93.393000 1 1658 1 chr3A.!!$R1 1657
6 TraesCS3D01G352600 chr3A 606515260 606522296 7036 True 976.550000 3110 92.853000 1 4669 6 chr3A.!!$R3 4668
7 TraesCS3D01G352600 chr3A 606571314 606576260 4946 True 769.600000 1716 88.751000 910 4669 5 chr3A.!!$R4 3759
8 TraesCS3D01G352600 chr3B 616426312 616427975 1663 True 2274.000000 2274 91.354000 1 1669 1 chr3B.!!$R1 1668
9 TraesCS3D01G352600 chr3B 616644864 616647928 3064 True 1291.333333 2859 89.260667 910 4436 3 chr3B.!!$R4 3526
10 TraesCS3D01G352600 chr3B 616582939 616583696 757 True 721.000000 721 83.954000 1 772 1 chr3B.!!$R2 771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
367 2793 1.134946 GGAACACAACTGGCCATATGC 59.865 52.381 5.51 0.0 40.16 3.14 F
1153 7307 1.050988 GCCTACCAGGGAGCAGATCA 61.051 60.000 0.00 0.0 35.37 2.92 F
2100 8642 0.502275 CAAAATGTCGCCGTTGTTGC 59.498 50.000 0.00 0.0 0.00 4.17 F
2220 8762 0.603569 GTCGTCACACCCATGACTCT 59.396 55.000 0.00 0.0 45.73 3.24 F
3452 10828 1.202604 TCTCCGAACAACTCCAACACC 60.203 52.381 0.00 0.0 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1429 7601 0.035725 TCTCTGTTGCATGCAGGAGG 60.036 55.0 29.46 19.39 34.89 4.30 R
2168 8710 0.110192 GCTGTTGCAAGTTACGGCTC 60.110 55.0 11.94 0.00 42.12 4.70 R
3452 10828 0.179200 GGAGTACGCGCATTTGTTGG 60.179 55.0 5.73 0.00 0.00 3.77 R
3643 11022 0.326618 GGGGATCTTGGGACTCTCCA 60.327 60.0 0.00 0.00 38.64 3.86 R
4485 13231 6.076949 GCTCAAGCTCAATTTCCTTTTGGAG 61.077 44.0 0.00 0.00 43.41 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.543777 AACAGAAACCGCTTGAGCTA 57.456 45.000 1.07 0.00 39.32 3.32
170 2590 1.985662 TCTGCACGGGGTCGGTATT 60.986 57.895 0.00 0.00 41.39 1.89
191 2611 5.508280 TTGGTACCAGCTACTAATTTGGT 57.492 39.130 15.65 2.93 45.42 3.67
241 2663 7.147312 CACAAACAAACTCATGTGTATTCCAT 58.853 34.615 0.00 0.00 38.62 3.41
242 2664 7.115236 CACAAACAAACTCATGTGTATTCCATG 59.885 37.037 0.00 0.00 40.82 3.66
300 2723 7.016296 AGGGGAGAAAATGAAAATAGAAACCA 58.984 34.615 0.00 0.00 0.00 3.67
332 2755 6.071672 TGAGTGATTTCCTAGAGTGTCTGAAG 60.072 42.308 0.00 0.00 0.00 3.02
367 2793 1.134946 GGAACACAACTGGCCATATGC 59.865 52.381 5.51 0.00 40.16 3.14
390 2816 4.212425 CCGTTTACATGCTACACTTGTGAA 59.788 41.667 7.83 0.00 37.26 3.18
426 2852 5.104941 TCAGTCAAATGGTATCGGAGAACAT 60.105 40.000 0.00 0.00 43.58 2.71
480 2907 3.118992 ACTGTGTATGCATGTGATCGACT 60.119 43.478 10.16 0.00 0.00 4.18
654 3082 8.375506 TGAATTACTAAATGGCCGAATAGATCT 58.624 33.333 13.60 0.00 0.00 2.75
658 3086 6.926313 ACTAAATGGCCGAATAGATCTAGAC 58.074 40.000 8.70 4.03 0.00 2.59
662 3090 4.079970 TGGCCGAATAGATCTAGACGAAT 58.920 43.478 23.58 1.09 0.00 3.34
692 3124 2.160143 CGCGCGTTTACATGCTATACTC 60.160 50.000 24.19 0.00 32.03 2.59
899 3380 2.452114 CCCCAGTCCTCCTCACCT 59.548 66.667 0.00 0.00 0.00 4.00
930 3411 3.780626 CCTTTAAATACCCCCAACACCA 58.219 45.455 0.00 0.00 0.00 4.17
1098 7252 1.421646 CCACTGATATCCCCCAACTCC 59.578 57.143 0.00 0.00 0.00 3.85
1153 7307 1.050988 GCCTACCAGGGAGCAGATCA 61.051 60.000 0.00 0.00 35.37 2.92
1553 7737 3.134458 GTCTTGATTGATTAGCTCCCGG 58.866 50.000 0.00 0.00 0.00 5.73
1575 7759 4.633980 GCCTGTGCGTTTCTTTGG 57.366 55.556 0.00 0.00 0.00 3.28
1576 7760 1.733526 GCCTGTGCGTTTCTTTGGT 59.266 52.632 0.00 0.00 0.00 3.67
1611 7801 4.140758 TGGGGTTTTGTTGGAAAGGGTATA 60.141 41.667 0.00 0.00 0.00 1.47
1634 7826 4.943705 ACATCTACGACTTTCCATTGCAAT 59.056 37.500 5.99 5.99 0.00 3.56
1675 7874 1.845809 GCTGGTCAAAGCTGGTCGTG 61.846 60.000 0.00 0.00 40.20 4.35
1676 7875 0.532862 CTGGTCAAAGCTGGTCGTGT 60.533 55.000 0.00 0.00 0.00 4.49
1677 7876 0.531974 TGGTCAAAGCTGGTCGTGTC 60.532 55.000 0.00 0.00 0.00 3.67
1678 7877 0.531974 GGTCAAAGCTGGTCGTGTCA 60.532 55.000 0.00 0.00 0.00 3.58
1679 7878 1.512926 GTCAAAGCTGGTCGTGTCAT 58.487 50.000 0.00 0.00 0.00 3.06
1747 7949 6.944234 ATGTTGACTCATCTATAGTCGTCA 57.056 37.500 0.00 5.98 45.19 4.35
1831 8255 4.255833 TGCTTGGCTGTATTCTTTTTGG 57.744 40.909 0.00 0.00 0.00 3.28
1888 8312 3.985008 TCTTTTCGCTTGTAGTAGCACA 58.015 40.909 0.00 0.00 41.28 4.57
2100 8642 0.502275 CAAAATGTCGCCGTTGTTGC 59.498 50.000 0.00 0.00 0.00 4.17
2168 8710 3.060615 GCACCCAGCCTTGCTCAG 61.061 66.667 0.00 0.00 36.40 3.35
2220 8762 0.603569 GTCGTCACACCCATGACTCT 59.396 55.000 0.00 0.00 45.73 3.24
2232 8774 1.260538 ATGACTCTGCCGCTCCTTCA 61.261 55.000 0.00 0.00 0.00 3.02
2265 8807 2.082366 GCCGCTCGCAACATTGTTG 61.082 57.895 22.40 22.40 37.47 3.33
2286 8828 2.125350 GGTCTTCTCTGGCAGCGG 60.125 66.667 10.34 5.28 0.00 5.52
2317 8859 1.567746 CCCTGCACAAAAATTGCGGC 61.568 55.000 0.00 0.00 43.85 6.53
2402 8947 2.681976 GCAGCTGCTTGGAGAGGAATTA 60.682 50.000 31.33 0.00 38.21 1.40
2498 9043 4.588951 AGGAGATAAGATTGCGTATGTGGA 59.411 41.667 0.00 0.00 0.00 4.02
2578 9159 2.780643 CTGCCTGCAACACGATCG 59.219 61.111 14.88 14.88 0.00 3.69
2598 9179 2.549754 CGACATTGCAAACACCTCTTCT 59.450 45.455 1.71 0.00 0.00 2.85
2753 9703 3.196463 TGGTCACACGATTTTACGTTGT 58.804 40.909 0.00 0.00 44.76 3.32
3042 10407 7.160726 TGACCATGATCGATTTATATTGCTCA 58.839 34.615 0.00 0.00 0.00 4.26
3147 10515 2.945008 TCTGCTTCCCGATATTTTGCTG 59.055 45.455 0.00 0.00 0.00 4.41
3345 10721 3.969553 ACCTACTACTCACAGATGCAGA 58.030 45.455 0.00 0.00 0.00 4.26
3364 10740 3.425525 CAGACGCACATAATGTATCCGAC 59.574 47.826 0.00 0.00 0.00 4.79
3452 10828 1.202604 TCTCCGAACAACTCCAACACC 60.203 52.381 0.00 0.00 0.00 4.16
3509 10888 1.303074 CAGCTATGGGGCGCATGAT 60.303 57.895 25.40 12.16 37.29 2.45
3643 11022 3.519510 TCAAGGTCGATCTCTTGGGAAAT 59.480 43.478 19.01 0.00 40.35 2.17
3663 11042 1.403687 GGAGAGTCCCAAGATCCCCG 61.404 65.000 0.00 0.00 0.00 5.73
3666 11045 0.688087 GAGTCCCAAGATCCCCGACT 60.688 60.000 2.88 2.88 36.53 4.18
4139 12813 2.735134 AGTTTTGAATGTCTACCGACGC 59.265 45.455 0.00 0.00 43.21 5.19
4229 12903 6.490721 CCTTAGAGAAACTCGGAGGTGTATAT 59.509 42.308 10.23 0.00 34.84 0.86
4230 12904 5.776173 AGAGAAACTCGGAGGTGTATATG 57.224 43.478 10.23 0.00 35.36 1.78
4590 13338 6.458210 CCCAAGATTGTTGAGTAAGCATTTT 58.542 36.000 0.00 0.00 0.00 1.82
4591 13339 6.930722 CCCAAGATTGTTGAGTAAGCATTTTT 59.069 34.615 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.614308 TGTGCTCTTTATCGATCCATTGAT 58.386 37.500 0.00 0.00 35.21 2.57
170 2590 5.508280 AACCAAATTAGTAGCTGGTACCA 57.492 39.130 15.39 15.39 41.36 3.25
238 2660 5.527214 TGCTTCTCGTTTATTGTATCCATGG 59.473 40.000 4.97 4.97 0.00 3.66
241 2663 7.624360 AAATGCTTCTCGTTTATTGTATCCA 57.376 32.000 0.00 0.00 32.40 3.41
242 2664 7.968405 ACAAAATGCTTCTCGTTTATTGTATCC 59.032 33.333 0.00 0.00 33.73 2.59
300 2723 7.233757 ACACTCTAGGAAATCACTCAGTTAAGT 59.766 37.037 0.00 0.00 0.00 2.24
332 2755 8.138712 CAGTTGTGTTCCCTCTAGATCTATTAC 58.861 40.741 2.11 0.00 0.00 1.89
367 2793 3.743911 TCACAAGTGTAGCATGTAAACGG 59.256 43.478 0.00 0.00 0.00 4.44
426 2852 2.425569 GGGTACACCATACCGGCGA 61.426 63.158 9.30 0.00 39.03 5.54
480 2907 6.835488 AGATATTAGTTGTTACCCGTGTCCTA 59.165 38.462 0.00 0.00 0.00 2.94
526 2953 6.715464 CGTGAGTTTGTGTGTTTTAGAAGAT 58.285 36.000 0.00 0.00 0.00 2.40
533 2960 1.198178 ACGCGTGAGTTTGTGTGTTTT 59.802 42.857 12.93 0.00 0.00 2.43
654 3082 2.532723 GCGCGTTGTTATGATTCGTCTA 59.467 45.455 8.43 0.00 0.00 2.59
658 3086 0.024491 ACGCGCGTTGTTATGATTCG 59.976 50.000 32.73 0.00 0.00 3.34
662 3090 1.791204 TGTAAACGCGCGTTGTTATGA 59.209 42.857 44.28 23.74 38.47 2.15
692 3124 6.536224 ACCTATACCGAAATAACTTTGTTCCG 59.464 38.462 0.00 0.00 0.00 4.30
830 3265 3.944250 AAAGCTGTGGATGGGCCCG 62.944 63.158 19.37 0.88 34.97 6.13
899 3380 2.621147 GGTATTTAAAGGCCCGTGGGAA 60.621 50.000 9.72 0.00 37.50 3.97
1082 3592 1.754380 CGCGGAGTTGGGGGATATCA 61.754 60.000 4.83 0.00 0.00 2.15
1116 7270 4.903010 ACCCAACACGCGTTCGCT 62.903 61.111 10.22 0.00 39.84 4.93
1126 7280 2.534396 CCCTGGTAGGCACCCAACA 61.534 63.158 4.08 0.00 45.11 3.33
1128 7282 1.923395 CTCCCTGGTAGGCACCCAA 60.923 63.158 4.08 0.00 45.11 4.12
1429 7601 0.035725 TCTCTGTTGCATGCAGGAGG 60.036 55.000 29.46 19.39 34.89 4.30
1491 7665 7.401080 CAAAAGCAGATTTAATTAAATGGCGG 58.599 34.615 24.60 14.17 37.51 6.13
1531 7708 3.432186 CCGGGAGCTAATCAATCAAGACA 60.432 47.826 0.00 0.00 0.00 3.41
1573 7757 1.062810 ACCCCAAAGTAAAGCCAACCA 60.063 47.619 0.00 0.00 0.00 3.67
1575 7759 3.830744 AAACCCCAAAGTAAAGCCAAC 57.169 42.857 0.00 0.00 0.00 3.77
1576 7760 3.519913 ACAAAACCCCAAAGTAAAGCCAA 59.480 39.130 0.00 0.00 0.00 4.52
1611 7801 3.937814 TGCAATGGAAAGTCGTAGATGT 58.062 40.909 0.00 0.00 40.67 3.06
1634 7826 2.361104 GCATGAAAGCCGTGGGGA 60.361 61.111 0.00 0.00 34.06 4.81
1675 7874 1.891150 GATGCCATCCCATCCAATGAC 59.109 52.381 0.00 0.00 36.46 3.06
1676 7875 2.297698 GATGCCATCCCATCCAATGA 57.702 50.000 0.00 0.00 36.46 2.57
1747 7949 7.170965 ACTACCATCATGTCACTTTCTGAAAT 58.829 34.615 2.88 0.00 0.00 2.17
1831 8255 2.170985 GTGCGTGCACATCGTGAC 59.829 61.111 19.45 1.04 45.53 3.67
2100 8642 3.250220 GTTGCGACCACAACTTTGG 57.750 52.632 0.00 0.00 45.20 3.28
2168 8710 0.110192 GCTGTTGCAAGTTACGGCTC 60.110 55.000 11.94 0.00 42.12 4.70
2220 8762 3.182590 AAGCTGTGAAGGAGCGGCA 62.183 57.895 1.45 0.00 41.61 5.69
2232 8774 4.660938 GGCAACCCCCGAAGCTGT 62.661 66.667 0.00 0.00 0.00 4.40
2257 8799 4.330250 CAGAGAAGACCATCCAACAATGT 58.670 43.478 0.00 0.00 0.00 2.71
2265 8807 0.463474 GCTGCCAGAGAAGACCATCC 60.463 60.000 0.00 0.00 0.00 3.51
2317 8859 2.124612 TGGAGCCATGCACCATCG 60.125 61.111 0.90 0.00 43.74 3.84
2439 8984 0.893270 TCCCGACACATGCCCTTTTG 60.893 55.000 0.00 0.00 0.00 2.44
2485 9030 5.822519 ACTACAAATCATCCACATACGCAAT 59.177 36.000 0.00 0.00 0.00 3.56
2522 9067 1.748879 GTTGCGGATTGCCTAGCCA 60.749 57.895 0.00 0.00 45.60 4.75
2578 9159 4.293415 CAAGAAGAGGTGTTTGCAATGTC 58.707 43.478 0.00 0.00 0.00 3.06
2598 9179 0.257328 TGCAACACCCTTCTGACCAA 59.743 50.000 0.00 0.00 0.00 3.67
2999 10364 9.192642 TCATGGTCATTTTGATCAAGTTGATAT 57.807 29.630 18.28 15.25 41.38 1.63
3147 10515 3.013921 TCCCATATTTTGCTCAACGTCC 58.986 45.455 0.00 0.00 0.00 4.79
3287 10663 2.300197 TGCTGCTGGCCCTGACATA 61.300 57.895 0.00 0.00 40.92 2.29
3345 10721 3.381045 CAGTCGGATACATTATGTGCGT 58.619 45.455 8.26 0.00 34.77 5.24
3364 10740 3.344215 GCGCCATCATCTCCGCAG 61.344 66.667 0.00 0.00 45.21 5.18
3452 10828 0.179200 GGAGTACGCGCATTTGTTGG 60.179 55.000 5.73 0.00 0.00 3.77
3505 10884 2.044806 GCGGTGGGAGTAGGCATCAT 62.045 60.000 0.00 0.00 0.00 2.45
3643 11022 0.326618 GGGGATCTTGGGACTCTCCA 60.327 60.000 0.00 0.00 38.64 3.86
3663 11042 3.990469 AGATCGACAACAATGTGTCAGTC 59.010 43.478 13.40 10.60 46.90 3.51
3666 11045 5.576774 GTCATAGATCGACAACAATGTGTCA 59.423 40.000 13.40 4.69 46.90 3.58
3896 11278 5.659440 ATTTAACAAGGTTTCCGATGCAT 57.341 34.783 0.00 0.00 0.00 3.96
4308 12982 8.030106 TCGTCTACAATGTTTACACATGATACA 58.970 33.333 0.00 0.00 43.34 2.29
4485 13231 6.076949 GCTCAAGCTCAATTTCCTTTTGGAG 61.077 44.000 0.00 0.00 43.41 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.