Multiple sequence alignment - TraesCS3D01G352300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G352300 chr3D 100.000 5768 0 0 1 5768 463181802 463187569 0.000000e+00 10652.0
1 TraesCS3D01G352300 chr3D 95.552 2518 89 12 2613 5125 462862750 462860251 0.000000e+00 4008.0
2 TraesCS3D01G352300 chr3D 97.533 1946 45 2 310 2253 462864912 462862968 0.000000e+00 3325.0
3 TraesCS3D01G352300 chr3D 92.797 236 10 3 2304 2539 462862969 462862741 9.260000e-88 335.0
4 TraesCS3D01G352300 chr3D 90.196 102 8 2 5124 5224 105157923 105157823 1.300000e-26 132.0
5 TraesCS3D01G352300 chr3D 90.196 102 8 2 5124 5224 105266482 105266382 1.300000e-26 132.0
6 TraesCS3D01G352300 chr3D 90.099 101 8 2 5124 5223 105231491 105231392 4.690000e-26 130.0
7 TraesCS3D01G352300 chr3D 96.721 61 2 0 2907 2967 462862209 462862149 1.020000e-17 102.0
8 TraesCS3D01G352300 chr3D 100.000 32 0 0 5614 5645 33189152 33189183 6.240000e-05 60.2
9 TraesCS3D01G352300 chr3B 94.597 2517 94 14 2616 5125 616260099 616262580 0.000000e+00 3856.0
10 TraesCS3D01G352300 chr3B 93.160 1535 81 10 723 2254 616258365 616259878 0.000000e+00 2231.0
11 TraesCS3D01G352300 chr3B 92.632 1140 67 8 3991 5125 615778253 615777126 0.000000e+00 1624.0
12 TraesCS3D01G352300 chr3B 89.753 527 24 9 325 822 616257839 616258364 0.000000e+00 647.0
13 TraesCS3D01G352300 chr3B 92.105 228 11 2 2312 2539 616259884 616260104 1.210000e-81 315.0
14 TraesCS3D01G352300 chr3B 85.818 275 13 3 5402 5650 615777127 615776853 9.530000e-68 268.0
15 TraesCS3D01G352300 chr3B 81.957 327 28 4 1 299 615778745 615778422 1.240000e-61 248.0
16 TraesCS3D01G352300 chr3B 89.216 102 10 1 5124 5224 54082911 54083012 6.070000e-25 126.0
17 TraesCS3D01G352300 chr3B 83.333 132 16 2 5636 5766 636441658 636441532 3.650000e-22 117.0
18 TraesCS3D01G352300 chr3B 95.312 64 3 0 2904 2967 616260623 616260686 1.020000e-17 102.0
19 TraesCS3D01G352300 chr3B 85.417 96 13 1 2524 2619 780824185 780824279 1.320000e-16 99.0
20 TraesCS3D01G352300 chr3B 93.878 49 1 2 3076 3122 616260388 616260436 8.020000e-09 73.1
21 TraesCS3D01G352300 chr3B 97.561 41 1 0 2266 2306 211111395 211111355 2.880000e-08 71.3
22 TraesCS3D01G352300 chr3A 95.012 2426 96 10 2714 5125 606430601 606433015 0.000000e+00 3786.0
23 TraesCS3D01G352300 chr3A 93.421 1900 90 14 373 2253 606428432 606430315 0.000000e+00 2784.0
24 TraesCS3D01G352300 chr3A 94.444 234 13 0 2304 2537 606430314 606430547 1.530000e-95 361.0
25 TraesCS3D01G352300 chr3A 95.238 84 4 0 5402 5485 606433014 606433097 3.630000e-27 134.0
26 TraesCS3D01G352300 chr3A 100.000 54 0 0 2628 2681 606430546 606430599 3.680000e-17 100.0
27 TraesCS3D01G352300 chr3A 93.750 64 4 0 2904 2967 606431049 606431112 4.760000e-16 97.1
28 TraesCS3D01G352300 chr7A 81.578 1889 292 32 3236 5108 30660223 30658375 0.000000e+00 1509.0
29 TraesCS3D01G352300 chr7A 77.739 283 40 12 469 747 30664387 30664124 1.000000e-32 152.0
30 TraesCS3D01G352300 chr7A 89.216 102 9 2 5124 5224 544895905 544896005 6.070000e-25 126.0
31 TraesCS3D01G352300 chr4A 81.025 1892 299 39 3236 5105 698133315 698135168 0.000000e+00 1450.0
32 TraesCS3D01G352300 chr4A 80.517 1894 308 37 3229 5105 698906160 698908009 0.000000e+00 1397.0
33 TraesCS3D01G352300 chr4A 81.794 747 125 9 1114 1857 698903375 698904113 2.950000e-172 616.0
34 TraesCS3D01G352300 chr4A 88.800 125 11 3 5259 5381 7177570 7177447 3.600000e-32 150.0
35 TraesCS3D01G352300 chr4A 91.589 107 6 3 2524 2629 614251526 614251422 1.680000e-30 145.0
36 TraesCS3D01G352300 chr4A 88.350 103 12 0 5122 5224 671507187 671507085 2.180000e-24 124.0
37 TraesCS3D01G352300 chr7D 79.963 1612 270 29 3512 5108 30270251 30268678 0.000000e+00 1138.0
38 TraesCS3D01G352300 chr7D 79.310 145 22 5 5242 5381 403559322 403559463 1.710000e-15 95.3
39 TraesCS3D01G352300 chr2D 83.457 1082 166 12 3445 4520 29068986 29070060 0.000000e+00 994.0
40 TraesCS3D01G352300 chr2D 83.505 194 30 2 4518 4709 29071718 29071911 4.590000e-41 180.0
41 TraesCS3D01G352300 chr2D 93.750 96 3 3 2536 2630 422331639 422331546 2.170000e-29 141.0
42 TraesCS3D01G352300 chr2D 82.301 113 17 3 5652 5763 31733302 31733412 1.710000e-15 95.3
43 TraesCS3D01G352300 chr2D 94.286 35 2 0 5614 5648 387558384 387558350 3.000000e-03 54.7
44 TraesCS3D01G352300 chr2A 84.956 904 117 13 1342 2236 31015498 31016391 0.000000e+00 898.0
45 TraesCS3D01G352300 chr2A 89.041 146 15 1 5242 5387 590934417 590934273 4.590000e-41 180.0
46 TraesCS3D01G352300 chr2A 91.089 101 9 0 5124 5224 583840934 583841034 2.800000e-28 137.0
47 TraesCS3D01G352300 chr2A 90.099 101 10 0 5124 5224 742722134 742722234 1.300000e-26 132.0
48 TraesCS3D01G352300 chr2A 85.455 110 8 8 2515 2619 713153443 713153549 2.200000e-19 108.0
49 TraesCS3D01G352300 chr2A 76.712 146 23 7 5243 5383 14960293 14960432 2.880000e-08 71.3
50 TraesCS3D01G352300 chrUn 86.676 728 95 1 1186 1911 381001297 381000570 0.000000e+00 806.0
51 TraesCS3D01G352300 chrUn 86.557 729 96 1 1185 1911 17017763 17017035 0.000000e+00 802.0
52 TraesCS3D01G352300 chrUn 94.681 94 3 2 2533 2625 224653306 224653398 1.680000e-30 145.0
53 TraesCS3D01G352300 chrUn 90.654 107 8 1 5652 5756 65138952 65138846 2.170000e-29 141.0
54 TraesCS3D01G352300 chr6A 86.567 201 26 1 1 200 420359138 420359338 2.710000e-53 220.0
55 TraesCS3D01G352300 chr6A 87.379 103 9 2 5652 5754 511529394 511529492 1.310000e-21 115.0
56 TraesCS3D01G352300 chr6A 83.929 112 10 4 5652 5763 560570633 560570736 3.680000e-17 100.0
57 TraesCS3D01G352300 chr6A 90.141 71 5 2 1 69 420359023 420359093 2.210000e-14 91.6
58 TraesCS3D01G352300 chr6A 91.045 67 5 1 1 66 420104070 420104136 7.960000e-14 89.8
59 TraesCS3D01G352300 chr1A 90.141 142 14 0 5242 5383 11254874 11255015 9.870000e-43 185.0
60 TraesCS3D01G352300 chr1A 97.561 41 1 0 2266 2306 306866018 306865978 2.880000e-08 71.3
61 TraesCS3D01G352300 chr1A 100.000 34 0 0 5614 5647 234234107 234234140 4.830000e-06 63.9
62 TraesCS3D01G352300 chr6D 73.941 472 105 16 3407 3869 468089171 468088709 2.140000e-39 174.0
63 TraesCS3D01G352300 chr6D 91.089 101 7 2 2532 2631 15348030 15347931 1.010000e-27 135.0
64 TraesCS3D01G352300 chr4B 89.231 130 11 2 5252 5381 576745029 576745155 5.980000e-35 159.0
65 TraesCS3D01G352300 chr4B 97.561 41 1 0 2266 2306 644323083 644323123 2.880000e-08 71.3
66 TraesCS3D01G352300 chr4B 97.436 39 1 0 5614 5652 403288025 403287987 3.730000e-07 67.6
67 TraesCS3D01G352300 chr4B 97.143 35 1 0 5614 5648 185238139 185238173 6.240000e-05 60.2
68 TraesCS3D01G352300 chr5B 94.949 99 2 3 2535 2632 429030607 429030703 1.000000e-32 152.0
69 TraesCS3D01G352300 chr5B 100.000 35 0 0 5614 5648 617821246 617821212 1.340000e-06 65.8
70 TraesCS3D01G352300 chr4D 88.889 126 11 2 5259 5381 461465387 461465512 1.000000e-32 152.0
71 TraesCS3D01G352300 chr4D 97.500 40 1 0 2266 2305 65935191 65935230 1.040000e-07 69.4
72 TraesCS3D01G352300 chr2B 94.737 95 2 3 2530 2623 241376415 241376323 1.680000e-30 145.0
73 TraesCS3D01G352300 chr2B 97.619 42 1 0 2266 2307 683014739 683014780 8.020000e-09 73.1
74 TraesCS3D01G352300 chr7B 88.889 117 11 2 5652 5766 475307982 475308098 6.020000e-30 143.0
75 TraesCS3D01G352300 chr7B 92.857 98 5 2 2530 2626 254488480 254488576 2.170000e-29 141.0
76 TraesCS3D01G352300 chr6B 94.624 93 4 1 2531 2623 709288172 709288081 6.020000e-30 143.0
77 TraesCS3D01G352300 chr6B 91.089 101 9 0 5124 5224 127605812 127605912 2.800000e-28 137.0
78 TraesCS3D01G352300 chr6B 95.455 44 2 0 5723 5766 631416659 631416702 2.880000e-08 71.3
79 TraesCS3D01G352300 chr1B 93.814 97 3 3 2534 2629 312230084 312230178 6.020000e-30 143.0
80 TraesCS3D01G352300 chr1B 84.211 95 15 0 4259 4353 16133259 16133165 6.150000e-15 93.5
81 TraesCS3D01G352300 chr1B 100.000 30 0 0 5618 5647 91558120 91558149 8.070000e-04 56.5
82 TraesCS3D01G352300 chr1D 93.506 77 4 1 5643 5719 196440592 196440517 4.720000e-21 113.0
83 TraesCS3D01G352300 chr1D 83.761 117 14 3 5652 5763 35756869 35756985 7.900000e-19 106.0
84 TraesCS3D01G352300 chr1D 97.500 40 1 0 2266 2305 38585629 38585668 1.040000e-07 69.4
85 TraesCS3D01G352300 chr5D 83.333 120 15 4 5646 5763 361674431 361674315 7.900000e-19 106.0
86 TraesCS3D01G352300 chr5D 97.500 40 1 0 2266 2305 282007079 282007118 1.040000e-07 69.4
87 TraesCS3D01G352300 chr5A 97.561 41 1 0 2266 2306 395300572 395300612 2.880000e-08 71.3
88 TraesCS3D01G352300 chr5A 91.667 48 2 2 2266 2312 40722021 40722067 1.340000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G352300 chr3D 463181802 463187569 5767 False 10652.000000 10652 100.000000 1 5768 1 chr3D.!!$F2 5767
1 TraesCS3D01G352300 chr3D 462860251 462864912 4661 True 1942.500000 4008 95.650750 310 5125 4 chr3D.!!$R4 4815
2 TraesCS3D01G352300 chr3B 616257839 616262580 4741 False 1204.016667 3856 93.134167 325 5125 6 chr3B.!!$F3 4800
3 TraesCS3D01G352300 chr3B 615776853 615778745 1892 True 713.333333 1624 86.802333 1 5650 3 chr3B.!!$R3 5649
4 TraesCS3D01G352300 chr3A 606428432 606433097 4665 False 1210.350000 3786 95.310833 373 5485 6 chr3A.!!$F1 5112
5 TraesCS3D01G352300 chr7A 30658375 30664387 6012 True 830.500000 1509 79.658500 469 5108 2 chr7A.!!$R1 4639
6 TraesCS3D01G352300 chr4A 698133315 698135168 1853 False 1450.000000 1450 81.025000 3236 5105 1 chr4A.!!$F1 1869
7 TraesCS3D01G352300 chr4A 698903375 698908009 4634 False 1006.500000 1397 81.155500 1114 5105 2 chr4A.!!$F2 3991
8 TraesCS3D01G352300 chr7D 30268678 30270251 1573 True 1138.000000 1138 79.963000 3512 5108 1 chr7D.!!$R1 1596
9 TraesCS3D01G352300 chr2D 29068986 29071911 2925 False 587.000000 994 83.481000 3445 4709 2 chr2D.!!$F2 1264
10 TraesCS3D01G352300 chr2A 31015498 31016391 893 False 898.000000 898 84.956000 1342 2236 1 chr2A.!!$F2 894
11 TraesCS3D01G352300 chrUn 381000570 381001297 727 True 806.000000 806 86.676000 1186 1911 1 chrUn.!!$R3 725
12 TraesCS3D01G352300 chrUn 17017035 17017763 728 True 802.000000 802 86.557000 1185 1911 1 chrUn.!!$R1 726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
328 351 0.036732 GTCCATGTTGGCCAGTCTCA 59.963 55.000 5.11 4.97 37.47 3.27 F
1268 1481 0.324943 GCCTGGCAAGACTTGGAGTA 59.675 55.000 15.17 0.00 0.00 2.59 F
1800 2018 1.172812 AAAACTCGGAGTTGGCCAGC 61.173 55.000 23.05 12.39 38.66 4.85 F
2281 2511 0.034198 TTCCATCCGTTTGAGCGACA 59.966 50.000 0.00 0.00 0.00 4.35 F
2282 2512 0.034198 TCCATCCGTTTGAGCGACAA 59.966 50.000 0.00 0.00 36.65 3.18 F
2283 2513 0.165944 CCATCCGTTTGAGCGACAAC 59.834 55.000 0.00 0.00 38.29 3.32 F
2310 2540 0.960286 GAGCGGAGGGAGTATACCAC 59.040 60.000 0.00 0.00 0.00 4.16 F
2550 2805 1.273098 GGAAGTACTCCCTCTGTCCCA 60.273 57.143 0.00 0.00 38.44 4.37 F
4492 6523 0.322816 AACATCGGGCACATGCTTCT 60.323 50.000 3.48 0.00 41.70 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2262 2492 0.034198 TGTCGCTCAAACGGATGGAA 59.966 50.000 0.00 0.0 0.00 3.53 R
2264 2494 0.165944 GTTGTCGCTCAAACGGATGG 59.834 55.000 0.00 0.0 37.81 3.51 R
2839 3269 1.098869 TTTTCGCAAACTGGTGCTGA 58.901 45.000 4.43 1.6 42.62 4.26 R
3729 5738 2.995939 TGCAAGCAGAACTGACTATTCG 59.004 45.455 5.97 0.0 0.00 3.34 R
3776 5785 6.896860 TGTTCCCATCATTGTCTTGGATATTT 59.103 34.615 0.00 0.0 31.94 1.40 R
4465 6496 1.303236 TGCCCGATGTTGACCCAAG 60.303 57.895 0.00 0.0 0.00 3.61 R
4492 6523 6.926313 ACAAACCTAGTGCAAAAGTTGTTAA 58.074 32.000 0.00 0.0 0.00 2.01 R
4548 8239 0.815213 TGACGCAGATAGCAATGGCC 60.815 55.000 0.00 0.0 46.13 5.36 R
5350 9063 0.244450 CCGCACATTGTTGCAGGAAT 59.756 50.000 10.41 0.0 43.15 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.515521 CCAGTTCCCTGTGCGGTTTC 61.516 60.000 0.00 0.00 36.95 2.78
33 34 1.302383 TGTGCGGTTTCCTTATGCGG 61.302 55.000 0.00 0.00 0.00 5.69
52 53 1.890979 CTGCCATGGTGGATCGAGC 60.891 63.158 14.67 0.00 40.96 5.03
97 98 3.123620 GAGCAGCTGCAGGTTCGG 61.124 66.667 38.24 6.52 45.16 4.30
200 223 3.912907 CGGAATCGGTAGGCGGCT 61.913 66.667 18.33 18.33 0.00 5.52
201 224 2.504519 GGAATCGGTAGGCGGCTT 59.495 61.111 19.76 0.00 0.00 4.35
202 225 1.594564 GGAATCGGTAGGCGGCTTC 60.595 63.158 19.76 12.84 0.00 3.86
203 226 1.949631 GAATCGGTAGGCGGCTTCG 60.950 63.158 19.76 21.22 0.00 3.79
204 227 3.441011 AATCGGTAGGCGGCTTCGG 62.441 63.158 19.76 16.95 0.00 4.30
222 245 4.109675 CGGTGGCGGAAAGGGGAT 62.110 66.667 0.00 0.00 0.00 3.85
223 246 2.124278 GGTGGCGGAAAGGGGATC 60.124 66.667 0.00 0.00 0.00 3.36
224 247 2.513897 GTGGCGGAAAGGGGATCG 60.514 66.667 0.00 0.00 0.00 3.69
225 248 3.792736 TGGCGGAAAGGGGATCGG 61.793 66.667 0.00 0.00 0.00 4.18
226 249 4.564110 GGCGGAAAGGGGATCGGG 62.564 72.222 0.00 0.00 0.00 5.14
228 251 3.792736 CGGAAAGGGGATCGGGCA 61.793 66.667 0.00 0.00 0.00 5.36
229 252 2.680965 GGAAAGGGGATCGGGCAA 59.319 61.111 0.00 0.00 0.00 4.52
230 253 1.230212 GGAAAGGGGATCGGGCAAT 59.770 57.895 0.00 0.00 0.00 3.56
231 254 1.109323 GGAAAGGGGATCGGGCAATG 61.109 60.000 0.00 0.00 0.00 2.82
232 255 1.076044 AAAGGGGATCGGGCAATGG 60.076 57.895 0.00 0.00 0.00 3.16
233 256 1.580066 AAAGGGGATCGGGCAATGGA 61.580 55.000 0.00 0.00 0.00 3.41
234 257 1.580066 AAGGGGATCGGGCAATGGAA 61.580 55.000 0.00 0.00 0.00 3.53
235 258 1.828224 GGGGATCGGGCAATGGAAC 60.828 63.158 0.00 0.00 0.00 3.62
236 259 1.227383 GGGATCGGGCAATGGAACT 59.773 57.895 0.00 0.00 0.00 3.01
237 260 0.395724 GGGATCGGGCAATGGAACTT 60.396 55.000 0.00 0.00 0.00 2.66
238 261 1.474330 GGATCGGGCAATGGAACTTT 58.526 50.000 0.00 0.00 0.00 2.66
239 262 1.405463 GGATCGGGCAATGGAACTTTC 59.595 52.381 0.00 0.00 0.00 2.62
240 263 2.091541 GATCGGGCAATGGAACTTTCA 58.908 47.619 0.00 0.00 0.00 2.69
241 264 2.214376 TCGGGCAATGGAACTTTCAT 57.786 45.000 0.00 0.00 0.00 2.57
242 265 1.818060 TCGGGCAATGGAACTTTCATG 59.182 47.619 0.00 0.00 0.00 3.07
243 266 1.736696 CGGGCAATGGAACTTTCATGC 60.737 52.381 0.00 5.52 0.00 4.06
244 267 1.551883 GGGCAATGGAACTTTCATGCT 59.448 47.619 11.18 0.00 0.00 3.79
245 268 2.613691 GGCAATGGAACTTTCATGCTG 58.386 47.619 11.18 0.00 0.00 4.41
246 269 2.613691 GCAATGGAACTTTCATGCTGG 58.386 47.619 0.00 0.00 0.00 4.85
247 270 2.613691 CAATGGAACTTTCATGCTGGC 58.386 47.619 0.00 0.00 0.00 4.85
248 271 0.813184 ATGGAACTTTCATGCTGGCG 59.187 50.000 0.00 0.00 0.00 5.69
249 272 1.243342 TGGAACTTTCATGCTGGCGG 61.243 55.000 0.00 0.00 0.00 6.13
250 273 1.244019 GGAACTTTCATGCTGGCGGT 61.244 55.000 0.00 0.00 0.00 5.68
251 274 0.598065 GAACTTTCATGCTGGCGGTT 59.402 50.000 0.00 0.00 0.00 4.44
252 275 0.314935 AACTTTCATGCTGGCGGTTG 59.685 50.000 0.00 0.00 0.00 3.77
253 276 1.213537 CTTTCATGCTGGCGGTTGG 59.786 57.895 0.00 0.00 0.00 3.77
254 277 2.824071 CTTTCATGCTGGCGGTTGGC 62.824 60.000 0.00 0.00 42.51 4.52
260 283 4.025401 CTGGCGGTTGGCGTTCAC 62.025 66.667 0.00 0.00 44.92 3.18
278 301 3.192922 GCGCGGCGGTTTACATCT 61.193 61.111 25.03 0.00 0.00 2.90
279 302 3.003478 CGCGGCGGTTTACATCTC 58.997 61.111 15.84 0.00 0.00 2.75
280 303 2.522638 CGCGGCGGTTTACATCTCC 61.523 63.158 15.84 0.00 0.00 3.71
281 304 1.153429 GCGGCGGTTTACATCTCCT 60.153 57.895 9.78 0.00 0.00 3.69
282 305 1.429148 GCGGCGGTTTACATCTCCTG 61.429 60.000 9.78 0.00 0.00 3.86
283 306 0.810031 CGGCGGTTTACATCTCCTGG 60.810 60.000 0.00 0.00 0.00 4.45
284 307 0.252197 GGCGGTTTACATCTCCTGGT 59.748 55.000 0.00 0.00 0.00 4.00
285 308 1.369625 GCGGTTTACATCTCCTGGTG 58.630 55.000 0.00 0.00 0.00 4.17
286 309 1.369625 CGGTTTACATCTCCTGGTGC 58.630 55.000 0.00 0.00 0.00 5.01
287 310 1.066143 CGGTTTACATCTCCTGGTGCT 60.066 52.381 0.00 0.00 0.00 4.40
288 311 2.633488 GGTTTACATCTCCTGGTGCTC 58.367 52.381 0.00 0.00 0.00 4.26
289 312 2.027192 GGTTTACATCTCCTGGTGCTCA 60.027 50.000 0.00 0.00 0.00 4.26
290 313 3.370953 GGTTTACATCTCCTGGTGCTCAT 60.371 47.826 0.00 0.00 0.00 2.90
291 314 3.548745 TTACATCTCCTGGTGCTCATG 57.451 47.619 0.00 0.00 0.00 3.07
292 315 1.576577 ACATCTCCTGGTGCTCATGA 58.423 50.000 0.00 0.00 0.00 3.07
293 316 2.125233 ACATCTCCTGGTGCTCATGAT 58.875 47.619 0.00 0.00 0.00 2.45
294 317 2.158798 ACATCTCCTGGTGCTCATGATG 60.159 50.000 0.00 0.00 35.55 3.07
295 318 1.576577 TCTCCTGGTGCTCATGATGT 58.423 50.000 0.00 0.00 0.00 3.06
296 319 2.750814 TCTCCTGGTGCTCATGATGTA 58.249 47.619 0.00 0.00 0.00 2.29
297 320 3.106827 TCTCCTGGTGCTCATGATGTAA 58.893 45.455 0.00 0.00 0.00 2.41
298 321 3.519107 TCTCCTGGTGCTCATGATGTAAA 59.481 43.478 0.00 0.00 0.00 2.01
299 322 3.609853 TCCTGGTGCTCATGATGTAAAC 58.390 45.455 0.00 0.00 0.00 2.01
300 323 3.264193 TCCTGGTGCTCATGATGTAAACT 59.736 43.478 0.00 0.00 0.00 2.66
301 324 3.376234 CCTGGTGCTCATGATGTAAACTG 59.624 47.826 0.00 0.00 0.00 3.16
302 325 3.346315 TGGTGCTCATGATGTAAACTGG 58.654 45.455 0.00 0.00 0.00 4.00
303 326 2.684881 GGTGCTCATGATGTAAACTGGG 59.315 50.000 0.00 0.00 0.00 4.45
304 327 3.347216 GTGCTCATGATGTAAACTGGGT 58.653 45.455 0.00 0.00 0.00 4.51
305 328 3.127548 GTGCTCATGATGTAAACTGGGTG 59.872 47.826 0.00 0.00 0.00 4.61
306 329 2.684881 GCTCATGATGTAAACTGGGTGG 59.315 50.000 0.00 0.00 0.00 4.61
307 330 3.873801 GCTCATGATGTAAACTGGGTGGT 60.874 47.826 0.00 0.00 0.00 4.16
308 331 3.684908 TCATGATGTAAACTGGGTGGTG 58.315 45.455 0.00 0.00 0.00 4.17
321 344 2.117206 TGGTGGTCCATGTTGGCC 59.883 61.111 0.00 0.00 39.03 5.36
323 346 1.978617 GGTGGTCCATGTTGGCCAG 60.979 63.158 5.11 0.00 41.85 4.85
328 351 0.036732 GTCCATGTTGGCCAGTCTCA 59.963 55.000 5.11 4.97 37.47 3.27
592 645 5.946377 AGTCCATCTAATCCCAACTTTGTTC 59.054 40.000 0.00 0.00 0.00 3.18
1230 1443 0.329261 TCATGAACCCCCTTCTGCTG 59.671 55.000 0.00 0.00 0.00 4.41
1268 1481 0.324943 GCCTGGCAAGACTTGGAGTA 59.675 55.000 15.17 0.00 0.00 2.59
1596 1811 3.819877 GAACGGTGACACGCCCCTT 62.820 63.158 0.00 0.00 37.37 3.95
1748 1963 1.802880 GCATCAAGCAGTCCGTATCGT 60.803 52.381 0.00 0.00 44.79 3.73
1800 2018 1.172812 AAAACTCGGAGTTGGCCAGC 61.173 55.000 23.05 12.39 38.66 4.85
2205 2435 5.873164 GTGTACGGGAAAGTTTGATCTACAT 59.127 40.000 0.00 0.00 0.00 2.29
2231 2461 3.002042 CCTGAGATAACAAATGCTGCTCG 59.998 47.826 0.00 0.00 0.00 5.03
2252 2482 8.255206 TGCTCGAAATGGTCTTTAAGTATTCTA 58.745 33.333 0.00 0.00 0.00 2.10
2253 2483 8.541312 GCTCGAAATGGTCTTTAAGTATTCTAC 58.459 37.037 0.00 0.00 0.00 2.59
2254 2484 9.804758 CTCGAAATGGTCTTTAAGTATTCTACT 57.195 33.333 0.00 0.00 41.73 2.57
2255 2485 9.798994 TCGAAATGGTCTTTAAGTATTCTACTC 57.201 33.333 0.00 0.00 38.26 2.59
2256 2486 9.032420 CGAAATGGTCTTTAAGTATTCTACTCC 57.968 37.037 0.00 0.00 38.26 3.85
2257 2487 9.327628 GAAATGGTCTTTAAGTATTCTACTCCC 57.672 37.037 0.00 0.00 38.26 4.30
2258 2488 8.625467 AATGGTCTTTAAGTATTCTACTCCCT 57.375 34.615 0.00 0.00 38.26 4.20
2259 2489 7.657023 TGGTCTTTAAGTATTCTACTCCCTC 57.343 40.000 0.00 0.00 38.26 4.30
2260 2490 6.610425 TGGTCTTTAAGTATTCTACTCCCTCC 59.390 42.308 0.00 0.00 38.26 4.30
2261 2491 6.238981 GGTCTTTAAGTATTCTACTCCCTCCG 60.239 46.154 0.00 0.00 38.26 4.63
2262 2492 6.320926 GTCTTTAAGTATTCTACTCCCTCCGT 59.679 42.308 0.00 0.00 38.26 4.69
2263 2493 6.894103 TCTTTAAGTATTCTACTCCCTCCGTT 59.106 38.462 0.00 0.00 38.26 4.44
2264 2494 6.705863 TTAAGTATTCTACTCCCTCCGTTC 57.294 41.667 0.00 0.00 38.26 3.95
2265 2495 3.564264 AGTATTCTACTCCCTCCGTTCC 58.436 50.000 0.00 0.00 32.47 3.62
2266 2496 2.544844 ATTCTACTCCCTCCGTTCCA 57.455 50.000 0.00 0.00 0.00 3.53
2267 2497 2.544844 TTCTACTCCCTCCGTTCCAT 57.455 50.000 0.00 0.00 0.00 3.41
2268 2498 2.068834 TCTACTCCCTCCGTTCCATC 57.931 55.000 0.00 0.00 0.00 3.51
2269 2499 1.041437 CTACTCCCTCCGTTCCATCC 58.959 60.000 0.00 0.00 0.00 3.51
2270 2500 0.754217 TACTCCCTCCGTTCCATCCG 60.754 60.000 0.00 0.00 0.00 4.18
2271 2501 2.038329 TCCCTCCGTTCCATCCGT 59.962 61.111 0.00 0.00 0.00 4.69
2272 2502 1.611261 TCCCTCCGTTCCATCCGTT 60.611 57.895 0.00 0.00 0.00 4.44
2273 2503 1.196104 TCCCTCCGTTCCATCCGTTT 61.196 55.000 0.00 0.00 0.00 3.60
2274 2504 1.024579 CCCTCCGTTCCATCCGTTTG 61.025 60.000 0.00 0.00 0.00 2.93
2275 2505 0.036765 CCTCCGTTCCATCCGTTTGA 60.037 55.000 0.00 0.00 0.00 2.69
2276 2506 1.359848 CTCCGTTCCATCCGTTTGAG 58.640 55.000 0.00 0.00 0.00 3.02
2277 2507 0.672401 TCCGTTCCATCCGTTTGAGC 60.672 55.000 0.00 0.00 0.00 4.26
2278 2508 1.419922 CGTTCCATCCGTTTGAGCG 59.580 57.895 0.00 0.00 0.00 5.03
2279 2509 1.011968 CGTTCCATCCGTTTGAGCGA 61.012 55.000 0.00 0.00 35.16 4.93
2280 2510 0.442699 GTTCCATCCGTTTGAGCGAC 59.557 55.000 0.00 0.00 0.00 5.19
2281 2511 0.034198 TTCCATCCGTTTGAGCGACA 59.966 50.000 0.00 0.00 0.00 4.35
2282 2512 0.034198 TCCATCCGTTTGAGCGACAA 59.966 50.000 0.00 0.00 36.65 3.18
2283 2513 0.165944 CCATCCGTTTGAGCGACAAC 59.834 55.000 0.00 0.00 38.29 3.32
2284 2514 1.148310 CATCCGTTTGAGCGACAACT 58.852 50.000 0.00 0.00 38.29 3.16
2285 2515 2.333926 CATCCGTTTGAGCGACAACTA 58.666 47.619 0.00 0.00 38.29 2.24
2286 2516 2.512485 TCCGTTTGAGCGACAACTAA 57.488 45.000 0.00 0.00 38.29 2.24
2287 2517 3.034721 TCCGTTTGAGCGACAACTAAT 57.965 42.857 0.00 0.00 38.29 1.73
2288 2518 4.177165 TCCGTTTGAGCGACAACTAATA 57.823 40.909 0.00 0.00 38.29 0.98
2289 2519 4.751060 TCCGTTTGAGCGACAACTAATAT 58.249 39.130 0.00 0.00 38.29 1.28
2290 2520 4.565166 TCCGTTTGAGCGACAACTAATATG 59.435 41.667 0.00 0.00 38.29 1.78
2291 2521 4.260212 CCGTTTGAGCGACAACTAATATGG 60.260 45.833 0.00 0.00 38.29 2.74
2292 2522 4.565166 CGTTTGAGCGACAACTAATATGGA 59.435 41.667 0.00 0.00 38.29 3.41
2293 2523 5.276395 CGTTTGAGCGACAACTAATATGGAG 60.276 44.000 0.00 0.00 38.29 3.86
2294 2524 3.717707 TGAGCGACAACTAATATGGAGC 58.282 45.455 0.00 0.00 0.00 4.70
2295 2525 2.726760 GAGCGACAACTAATATGGAGCG 59.273 50.000 0.00 0.00 32.23 5.03
2296 2526 1.792949 GCGACAACTAATATGGAGCGG 59.207 52.381 0.00 0.00 0.00 5.52
2297 2527 2.545113 GCGACAACTAATATGGAGCGGA 60.545 50.000 0.00 0.00 0.00 5.54
2298 2528 3.309388 CGACAACTAATATGGAGCGGAG 58.691 50.000 0.00 0.00 0.00 4.63
2299 2529 3.654414 GACAACTAATATGGAGCGGAGG 58.346 50.000 0.00 0.00 0.00 4.30
2300 2530 2.368875 ACAACTAATATGGAGCGGAGGG 59.631 50.000 0.00 0.00 0.00 4.30
2301 2531 2.632996 CAACTAATATGGAGCGGAGGGA 59.367 50.000 0.00 0.00 0.00 4.20
2302 2532 2.530701 ACTAATATGGAGCGGAGGGAG 58.469 52.381 0.00 0.00 0.00 4.30
2303 2533 2.158295 ACTAATATGGAGCGGAGGGAGT 60.158 50.000 0.00 0.00 0.00 3.85
2310 2540 0.960286 GAGCGGAGGGAGTATACCAC 59.040 60.000 0.00 0.00 0.00 4.16
2356 2586 3.139025 AGTGCATTCCACCTAGCCATAAT 59.861 43.478 0.00 0.00 45.83 1.28
2539 2794 3.851098 CTGTGCTAGTTGGGAAGTACTC 58.149 50.000 0.00 0.00 30.61 2.59
2540 2795 2.565834 TGTGCTAGTTGGGAAGTACTCC 59.434 50.000 0.00 0.00 44.54 3.85
2549 2804 1.487300 GGAAGTACTCCCTCTGTCCC 58.513 60.000 0.00 0.00 38.44 4.46
2550 2805 1.273098 GGAAGTACTCCCTCTGTCCCA 60.273 57.143 0.00 0.00 38.44 4.37
2551 2806 2.627217 GGAAGTACTCCCTCTGTCCCAT 60.627 54.545 0.00 0.00 38.44 4.00
2552 2807 3.373877 GGAAGTACTCCCTCTGTCCCATA 60.374 52.174 0.00 0.00 38.44 2.74
2553 2808 4.287552 GAAGTACTCCCTCTGTCCCATAA 58.712 47.826 0.00 0.00 0.00 1.90
2554 2809 4.561254 AGTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
2555 2810 4.227197 AGTACTCCCTCTGTCCCATAATG 58.773 47.826 0.00 0.00 0.00 1.90
2556 2811 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
2557 2812 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
2558 2813 4.631234 ACTCCCTCTGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
2559 2814 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
2560 2815 4.890988 TCCCTCTGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
2561 2816 4.654262 TCCCTCTGTCCCATAATGTAAGAC 59.346 45.833 0.00 0.00 0.00 3.01
2562 2817 4.656112 CCCTCTGTCCCATAATGTAAGACT 59.344 45.833 0.00 0.00 0.00 3.24
2563 2818 5.131142 CCCTCTGTCCCATAATGTAAGACTT 59.869 44.000 0.00 0.00 0.00 3.01
2564 2819 6.353082 CCCTCTGTCCCATAATGTAAGACTTT 60.353 42.308 0.00 0.00 0.00 2.66
2565 2820 7.112779 CCTCTGTCCCATAATGTAAGACTTTT 58.887 38.462 0.00 0.00 0.00 2.27
2566 2821 7.611855 CCTCTGTCCCATAATGTAAGACTTTTT 59.388 37.037 0.00 0.00 0.00 1.94
2593 2848 4.690122 ACTACACTAGTGTCAAAAAGCGT 58.310 39.130 31.11 13.23 43.74 5.07
2594 2849 4.743644 ACTACACTAGTGTCAAAAAGCGTC 59.256 41.667 31.11 0.00 43.74 5.19
2595 2850 3.793559 ACACTAGTGTCAAAAAGCGTCT 58.206 40.909 22.95 0.00 40.24 4.18
2596 2851 4.189231 ACACTAGTGTCAAAAAGCGTCTT 58.811 39.130 22.95 0.00 40.24 3.01
2597 2852 5.353938 ACACTAGTGTCAAAAAGCGTCTTA 58.646 37.500 22.95 0.00 40.24 2.10
2598 2853 5.233689 ACACTAGTGTCAAAAAGCGTCTTAC 59.766 40.000 22.95 0.00 40.24 2.34
2599 2854 5.233476 CACTAGTGTCAAAAAGCGTCTTACA 59.767 40.000 15.06 0.00 0.00 2.41
2600 2855 5.989777 ACTAGTGTCAAAAAGCGTCTTACAT 59.010 36.000 0.00 0.00 0.00 2.29
2601 2856 5.751243 AGTGTCAAAAAGCGTCTTACATT 57.249 34.783 0.00 0.00 0.00 2.71
2602 2857 6.854496 AGTGTCAAAAAGCGTCTTACATTA 57.146 33.333 0.00 0.00 0.00 1.90
2603 2858 7.435068 AGTGTCAAAAAGCGTCTTACATTAT 57.565 32.000 0.00 0.00 0.00 1.28
2604 2859 7.298122 AGTGTCAAAAAGCGTCTTACATTATG 58.702 34.615 0.00 0.00 0.00 1.90
2605 2860 6.523201 GTGTCAAAAAGCGTCTTACATTATGG 59.477 38.462 0.00 0.00 0.00 2.74
2606 2861 6.027749 GTCAAAAAGCGTCTTACATTATGGG 58.972 40.000 0.00 0.00 0.00 4.00
2607 2862 5.941058 TCAAAAAGCGTCTTACATTATGGGA 59.059 36.000 0.00 0.00 0.00 4.37
2608 2863 6.601613 TCAAAAAGCGTCTTACATTATGGGAT 59.398 34.615 0.00 0.00 0.00 3.85
2609 2864 6.377327 AAAAGCGTCTTACATTATGGGATG 57.623 37.500 0.00 0.00 0.00 3.51
2610 2865 4.008074 AGCGTCTTACATTATGGGATGG 57.992 45.455 0.00 0.00 0.00 3.51
2611 2866 3.646162 AGCGTCTTACATTATGGGATGGA 59.354 43.478 0.00 0.00 0.00 3.41
2612 2867 3.997021 GCGTCTTACATTATGGGATGGAG 59.003 47.826 0.00 0.00 0.00 3.86
2613 2868 4.569943 CGTCTTACATTATGGGATGGAGG 58.430 47.826 0.00 0.00 0.00 4.30
2614 2869 4.563580 CGTCTTACATTATGGGATGGAGGG 60.564 50.000 0.00 0.00 0.00 4.30
2615 2870 4.597507 GTCTTACATTATGGGATGGAGGGA 59.402 45.833 0.00 0.00 0.00 4.20
2616 2871 4.846367 TCTTACATTATGGGATGGAGGGAG 59.154 45.833 0.00 0.00 0.00 4.30
2617 2872 3.080660 ACATTATGGGATGGAGGGAGT 57.919 47.619 0.00 0.00 0.00 3.85
2618 2873 4.228237 ACATTATGGGATGGAGGGAGTA 57.772 45.455 0.00 0.00 0.00 2.59
2619 2874 3.910627 ACATTATGGGATGGAGGGAGTAC 59.089 47.826 0.00 0.00 0.00 2.73
2620 2875 4.171234 CATTATGGGATGGAGGGAGTACT 58.829 47.826 0.00 0.00 0.00 2.73
2717 2975 2.226437 CCAAGCGACAGTATTGCAGTTT 59.774 45.455 0.00 0.00 40.68 2.66
2873 3304 7.646526 AGTTTGCGAAAAAGGTGAAACTATAAC 59.353 33.333 0.00 0.00 36.74 1.89
2893 3324 3.846360 ACTTAGTACTTTGGCTAGTGCG 58.154 45.455 0.00 0.00 40.82 5.34
2921 3352 4.633565 GCAGAAGGAGATTTACAGGAAGTG 59.366 45.833 0.00 0.00 0.00 3.16
3103 4850 3.924686 CAGGAAGTACGGACACATGTAAC 59.075 47.826 0.00 0.00 0.00 2.50
3141 5150 8.145767 TGATAGTACGGGTTTATGAGTTTATGG 58.854 37.037 0.00 0.00 0.00 2.74
3194 5203 4.516092 GTGCGGACACATGTAATTAGTC 57.484 45.455 0.63 0.89 46.61 2.59
3201 5210 5.686397 GGACACATGTAATTAGTCGAGTAGC 59.314 44.000 0.00 0.00 30.54 3.58
3377 5386 7.759886 TCATTTCCATAGTAGTTGTTCTTCTCG 59.240 37.037 0.00 0.00 0.00 4.04
3632 5641 1.843851 TCTGTTGGTGAAAGTGGGACT 59.156 47.619 0.00 0.00 0.00 3.85
3729 5738 3.567585 AGCTGCTGAGAAAAGGAAAGTTC 59.432 43.478 0.00 0.00 0.00 3.01
3755 5764 2.615912 AGTCAGTTCTGCTTGCAGAAAC 59.384 45.455 31.38 25.98 42.12 2.78
3776 5785 6.978674 AACCGATCACTCTTATGGATTCTA 57.021 37.500 0.00 0.00 0.00 2.10
3864 5873 5.983540 TGTTTTGTGCTTTGTTAGGGAATT 58.016 33.333 0.00 0.00 0.00 2.17
4465 6496 2.480845 ACTTAATCGCGGCCTTGTATC 58.519 47.619 6.13 0.00 0.00 2.24
4492 6523 0.322816 AACATCGGGCACATGCTTCT 60.323 50.000 3.48 0.00 41.70 2.85
4792 8496 3.441101 TGGAGCAGATACAACTACCAGT 58.559 45.455 0.00 0.00 0.00 4.00
4820 8527 5.771153 TGACTTGAAGATGCATCAAACAA 57.229 34.783 27.81 24.34 36.43 2.83
4834 8541 6.201806 TGCATCAAACAAATAACTTTTTCCGG 59.798 34.615 0.00 0.00 0.00 5.14
4848 8555 4.782019 TTTTCCGGGAGATGTTTTCATG 57.218 40.909 0.00 0.00 41.05 3.07
4897 8605 6.315891 AGGATTTACTGTAGTCGTCAGTCTAC 59.684 42.308 1.82 0.00 43.76 2.59
5120 8833 7.591057 CCACACGCAAATATATATTTCAACCTG 59.409 37.037 16.25 7.72 33.88 4.00
5123 8836 8.559536 CACGCAAATATATATTTCAACCTGTCT 58.440 33.333 16.25 0.00 33.88 3.41
5124 8837 9.772973 ACGCAAATATATATTTCAACCTGTCTA 57.227 29.630 16.25 0.00 33.88 2.59
5130 8843 9.845214 ATATATATTTCAACCTGTCTACTCCCT 57.155 33.333 0.00 0.00 0.00 4.20
5131 8844 4.828072 ATTTCAACCTGTCTACTCCCTC 57.172 45.455 0.00 0.00 0.00 4.30
5132 8845 1.835494 TCAACCTGTCTACTCCCTCG 58.165 55.000 0.00 0.00 0.00 4.63
5133 8846 0.818296 CAACCTGTCTACTCCCTCGG 59.182 60.000 0.00 0.00 0.00 4.63
5134 8847 0.408700 AACCTGTCTACTCCCTCGGT 59.591 55.000 0.00 0.00 0.00 4.69
5135 8848 0.408700 ACCTGTCTACTCCCTCGGTT 59.591 55.000 0.00 0.00 0.00 4.44
5136 8849 1.104630 CCTGTCTACTCCCTCGGTTC 58.895 60.000 0.00 0.00 0.00 3.62
5137 8850 1.104630 CTGTCTACTCCCTCGGTTCC 58.895 60.000 0.00 0.00 0.00 3.62
5138 8851 0.702902 TGTCTACTCCCTCGGTTCCT 59.297 55.000 0.00 0.00 0.00 3.36
5139 8852 1.918262 TGTCTACTCCCTCGGTTCCTA 59.082 52.381 0.00 0.00 0.00 2.94
5140 8853 2.309755 TGTCTACTCCCTCGGTTCCTAA 59.690 50.000 0.00 0.00 0.00 2.69
5141 8854 3.245371 TGTCTACTCCCTCGGTTCCTAAA 60.245 47.826 0.00 0.00 0.00 1.85
5142 8855 3.959449 GTCTACTCCCTCGGTTCCTAAAT 59.041 47.826 0.00 0.00 0.00 1.40
5143 8856 5.136105 GTCTACTCCCTCGGTTCCTAAATA 58.864 45.833 0.00 0.00 0.00 1.40
5144 8857 5.774184 GTCTACTCCCTCGGTTCCTAAATAT 59.226 44.000 0.00 0.00 0.00 1.28
5145 8858 6.944862 GTCTACTCCCTCGGTTCCTAAATATA 59.055 42.308 0.00 0.00 0.00 0.86
5146 8859 7.121020 GTCTACTCCCTCGGTTCCTAAATATAG 59.879 44.444 0.00 0.00 0.00 1.31
5171 8884 9.479549 AGGCCTTTTTAGAGATTTCAATATCAA 57.520 29.630 0.00 0.00 0.00 2.57
5172 8885 9.521503 GGCCTTTTTAGAGATTTCAATATCAAC 57.478 33.333 0.00 0.00 0.00 3.18
5181 8894 9.698309 AGAGATTTCAATATCAACTACATACGG 57.302 33.333 0.00 0.00 0.00 4.02
5182 8895 9.692749 GAGATTTCAATATCAACTACATACGGA 57.307 33.333 0.00 0.00 0.00 4.69
5183 8896 9.698309 AGATTTCAATATCAACTACATACGGAG 57.302 33.333 0.00 0.00 0.00 4.63
5202 8915 6.931838 ACGGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 41.94 2.74
5203 8916 6.812160 ACGGAGTAAAATGAGTGAATCTACAC 59.188 38.462 0.00 0.00 41.94 2.90
5217 8930 8.779354 GTGAATCTACACTTTGAAATAGGTCT 57.221 34.615 0.00 0.00 37.73 3.85
5218 8931 9.871238 GTGAATCTACACTTTGAAATAGGTCTA 57.129 33.333 0.00 0.00 37.73 2.59
5245 8958 8.740123 ATACCAAATATTCATGTTCCGTACAA 57.260 30.769 0.00 0.00 40.89 2.41
5246 8959 7.639113 ACCAAATATTCATGTTCCGTACAAT 57.361 32.000 0.00 0.00 40.89 2.71
5247 8960 8.740123 ACCAAATATTCATGTTCCGTACAATA 57.260 30.769 0.00 0.00 40.89 1.90
5248 8961 9.179909 ACCAAATATTCATGTTCCGTACAATAA 57.820 29.630 0.00 0.00 40.89 1.40
5256 8969 9.828852 TTCATGTTCCGTACAATAATTTTACAC 57.171 29.630 0.00 0.00 40.89 2.90
5257 8970 9.000486 TCATGTTCCGTACAATAATTTTACACA 58.000 29.630 0.00 0.00 40.89 3.72
5258 8971 9.613957 CATGTTCCGTACAATAATTTTACACAA 57.386 29.630 0.00 0.00 40.89 3.33
5259 8972 9.615295 ATGTTCCGTACAATAATTTTACACAAC 57.385 29.630 0.00 0.00 40.89 3.32
5260 8973 8.618677 TGTTCCGTACAATAATTTTACACAACA 58.381 29.630 0.00 0.00 32.64 3.33
5261 8974 9.448294 GTTCCGTACAATAATTTTACACAACAA 57.552 29.630 0.00 0.00 0.00 2.83
5309 9022 9.396022 AGTTGTCATATTATTCCAAATCTTCGT 57.604 29.630 0.00 0.00 0.00 3.85
5310 9023 9.438291 GTTGTCATATTATTCCAAATCTTCGTG 57.562 33.333 0.00 0.00 0.00 4.35
5311 9024 8.731275 TGTCATATTATTCCAAATCTTCGTGT 57.269 30.769 0.00 0.00 0.00 4.49
5312 9025 9.173021 TGTCATATTATTCCAAATCTTCGTGTT 57.827 29.630 0.00 0.00 0.00 3.32
5313 9026 9.651718 GTCATATTATTCCAAATCTTCGTGTTC 57.348 33.333 0.00 0.00 0.00 3.18
5314 9027 8.836413 TCATATTATTCCAAATCTTCGTGTTCC 58.164 33.333 0.00 0.00 0.00 3.62
5315 9028 8.620416 CATATTATTCCAAATCTTCGTGTTCCA 58.380 33.333 0.00 0.00 0.00 3.53
5316 9029 7.645058 ATTATTCCAAATCTTCGTGTTCCAT 57.355 32.000 0.00 0.00 0.00 3.41
5317 9030 8.746052 ATTATTCCAAATCTTCGTGTTCCATA 57.254 30.769 0.00 0.00 0.00 2.74
5318 9031 5.873179 TTCCAAATCTTCGTGTTCCATAC 57.127 39.130 0.00 0.00 0.00 2.39
5319 9032 4.900684 TCCAAATCTTCGTGTTCCATACA 58.099 39.130 0.00 0.00 0.00 2.29
5320 9033 5.309638 TCCAAATCTTCGTGTTCCATACAA 58.690 37.500 0.00 0.00 38.80 2.41
5321 9034 5.180492 TCCAAATCTTCGTGTTCCATACAAC 59.820 40.000 0.00 0.00 38.80 3.32
5322 9035 5.390613 CAAATCTTCGTGTTCCATACAACC 58.609 41.667 0.00 0.00 38.80 3.77
5323 9036 3.755112 TCTTCGTGTTCCATACAACCA 57.245 42.857 0.00 0.00 38.80 3.67
5324 9037 4.074627 TCTTCGTGTTCCATACAACCAA 57.925 40.909 0.00 0.00 38.80 3.67
5325 9038 4.452825 TCTTCGTGTTCCATACAACCAAA 58.547 39.130 0.00 0.00 38.80 3.28
5326 9039 5.067273 TCTTCGTGTTCCATACAACCAAAT 58.933 37.500 0.00 0.00 38.80 2.32
5327 9040 5.180492 TCTTCGTGTTCCATACAACCAAATC 59.820 40.000 0.00 0.00 38.80 2.17
5328 9041 4.647611 TCGTGTTCCATACAACCAAATCT 58.352 39.130 0.00 0.00 38.80 2.40
5329 9042 4.693566 TCGTGTTCCATACAACCAAATCTC 59.306 41.667 0.00 0.00 38.80 2.75
5330 9043 4.454161 CGTGTTCCATACAACCAAATCTCA 59.546 41.667 0.00 0.00 38.80 3.27
5331 9044 5.123820 CGTGTTCCATACAACCAAATCTCAT 59.876 40.000 0.00 0.00 38.80 2.90
5332 9045 6.349280 CGTGTTCCATACAACCAAATCTCATT 60.349 38.462 0.00 0.00 38.80 2.57
5333 9046 7.148323 CGTGTTCCATACAACCAAATCTCATTA 60.148 37.037 0.00 0.00 38.80 1.90
5334 9047 8.184192 GTGTTCCATACAACCAAATCTCATTAG 58.816 37.037 0.00 0.00 38.80 1.73
5335 9048 8.106462 TGTTCCATACAACCAAATCTCATTAGA 58.894 33.333 0.00 0.00 32.64 2.10
5336 9049 8.956426 GTTCCATACAACCAAATCTCATTAGAA 58.044 33.333 0.00 0.00 34.73 2.10
5337 9050 9.699410 TTCCATACAACCAAATCTCATTAGAAT 57.301 29.630 0.00 0.00 34.73 2.40
5358 9071 8.640063 AGAATATATTGCAACATATTCCTGCA 57.360 30.769 32.27 1.52 41.77 4.41
5363 9076 4.804868 TGCAACATATTCCTGCAACAAT 57.195 36.364 1.54 0.00 42.84 2.71
5364 9077 4.496360 TGCAACATATTCCTGCAACAATG 58.504 39.130 1.54 0.00 42.84 2.82
5365 9078 4.021280 TGCAACATATTCCTGCAACAATGT 60.021 37.500 1.54 0.00 42.84 2.71
5366 9079 4.327898 GCAACATATTCCTGCAACAATGTG 59.672 41.667 10.70 10.70 36.09 3.21
5367 9080 4.114058 ACATATTCCTGCAACAATGTGC 57.886 40.909 11.71 0.00 45.15 4.57
5373 9086 2.733945 GCAACAATGTGCGGGGTT 59.266 55.556 0.00 0.00 34.21 4.11
5374 9087 1.068921 GCAACAATGTGCGGGGTTT 59.931 52.632 0.00 0.00 34.21 3.27
5375 9088 1.220817 GCAACAATGTGCGGGGTTTG 61.221 55.000 0.00 0.00 34.21 2.93
5376 9089 0.387202 CAACAATGTGCGGGGTTTGA 59.613 50.000 0.00 0.00 0.00 2.69
5377 9090 1.000731 CAACAATGTGCGGGGTTTGAT 59.999 47.619 0.00 0.00 0.00 2.57
5378 9091 0.887933 ACAATGTGCGGGGTTTGATC 59.112 50.000 0.00 0.00 0.00 2.92
5379 9092 1.176527 CAATGTGCGGGGTTTGATCT 58.823 50.000 0.00 0.00 0.00 2.75
5380 9093 2.290641 ACAATGTGCGGGGTTTGATCTA 60.291 45.455 0.00 0.00 0.00 1.98
5381 9094 2.332063 ATGTGCGGGGTTTGATCTAG 57.668 50.000 0.00 0.00 0.00 2.43
5382 9095 0.981183 TGTGCGGGGTTTGATCTAGT 59.019 50.000 0.00 0.00 0.00 2.57
5383 9096 2.181125 TGTGCGGGGTTTGATCTAGTA 58.819 47.619 0.00 0.00 0.00 1.82
5384 9097 2.769663 TGTGCGGGGTTTGATCTAGTAT 59.230 45.455 0.00 0.00 0.00 2.12
5385 9098 3.181469 TGTGCGGGGTTTGATCTAGTATC 60.181 47.826 0.00 0.00 0.00 2.24
5386 9099 3.069729 GTGCGGGGTTTGATCTAGTATCT 59.930 47.826 0.00 0.00 0.00 1.98
5387 9100 4.280174 GTGCGGGGTTTGATCTAGTATCTA 59.720 45.833 0.00 0.00 0.00 1.98
5388 9101 4.897076 TGCGGGGTTTGATCTAGTATCTAA 59.103 41.667 0.00 0.00 0.00 2.10
5389 9102 5.010719 TGCGGGGTTTGATCTAGTATCTAAG 59.989 44.000 0.00 0.00 0.00 2.18
5390 9103 5.243283 GCGGGGTTTGATCTAGTATCTAAGA 59.757 44.000 0.00 0.00 0.00 2.10
5391 9104 6.239232 GCGGGGTTTGATCTAGTATCTAAGAA 60.239 42.308 0.00 0.00 0.00 2.52
5392 9105 7.146648 CGGGGTTTGATCTAGTATCTAAGAAC 58.853 42.308 0.00 0.00 0.00 3.01
5393 9106 7.146648 GGGGTTTGATCTAGTATCTAAGAACG 58.853 42.308 0.00 0.00 0.00 3.95
5394 9107 7.146648 GGGTTTGATCTAGTATCTAAGAACGG 58.853 42.308 0.00 0.00 0.00 4.44
5395 9108 7.014038 GGGTTTGATCTAGTATCTAAGAACGGA 59.986 40.741 0.00 0.00 0.00 4.69
5396 9109 8.077386 GGTTTGATCTAGTATCTAAGAACGGAG 58.923 40.741 0.00 0.00 0.00 4.63
5397 9110 7.747155 TTGATCTAGTATCTAAGAACGGAGG 57.253 40.000 0.00 0.00 0.00 4.30
5398 9111 6.239396 TGATCTAGTATCTAAGAACGGAGGG 58.761 44.000 0.00 0.00 0.00 4.30
5399 9112 5.901413 TCTAGTATCTAAGAACGGAGGGA 57.099 43.478 0.00 0.00 0.00 4.20
5400 9113 5.867330 TCTAGTATCTAAGAACGGAGGGAG 58.133 45.833 0.00 0.00 0.00 4.30
5415 9128 7.191593 ACGGAGGGAGTAACAGTTTATATTT 57.808 36.000 0.00 0.00 0.00 1.40
5503 9216 3.485463 TGGGTAACTGTTTGTCCTCAG 57.515 47.619 0.00 0.00 37.65 3.35
5524 9253 3.627577 AGAGTGTCCAATGTTGTGTCAAC 59.372 43.478 5.78 5.78 0.00 3.18
5536 9265 3.462483 TGTGTCAACCGACTTATGTGT 57.538 42.857 0.00 0.00 43.06 3.72
5551 9280 8.688184 CGACTTATGTGTAGGACATATTTTACG 58.312 37.037 0.00 0.00 45.20 3.18
5553 9282 5.900339 ATGTGTAGGACATATTTTACGCG 57.100 39.130 3.53 3.53 43.96 6.01
5559 9288 3.070446 AGGACATATTTTACGCGATCCCA 59.930 43.478 15.93 0.00 0.00 4.37
5561 9290 4.056050 GACATATTTTACGCGATCCCACT 58.944 43.478 15.93 0.00 0.00 4.00
5565 9294 6.539464 ACATATTTTACGCGATCCCACTTTAA 59.461 34.615 15.93 0.00 0.00 1.52
5594 9323 6.623743 CGCGCTCAAATGTTTATTTACTACTC 59.376 38.462 5.56 0.00 34.81 2.59
5650 9389 7.505923 AGCTTTTTGGGATGGAGGTAATATAAC 59.494 37.037 0.00 0.00 0.00 1.89
5651 9390 7.286775 GCTTTTTGGGATGGAGGTAATATAACA 59.713 37.037 0.00 0.00 0.00 2.41
5652 9391 8.528044 TTTTTGGGATGGAGGTAATATAACAC 57.472 34.615 0.00 0.00 0.00 3.32
5653 9392 7.460214 TTTGGGATGGAGGTAATATAACACT 57.540 36.000 0.00 0.00 0.00 3.55
5654 9393 6.681729 TGGGATGGAGGTAATATAACACTC 57.318 41.667 0.00 0.00 0.00 3.51
5655 9394 5.546499 TGGGATGGAGGTAATATAACACTCC 59.454 44.000 0.00 0.00 46.14 3.85
5656 9395 5.045797 GGGATGGAGGTAATATAACACTCCC 60.046 48.000 6.57 0.00 45.53 4.30
5657 9396 5.785940 GGATGGAGGTAATATAACACTCCCT 59.214 44.000 6.57 0.00 45.53 4.20
5658 9397 6.070710 GGATGGAGGTAATATAACACTCCCTC 60.071 46.154 6.57 6.23 45.53 4.30
5660 9399 4.220163 GGAGGTAATATAACACTCCCTCCG 59.780 50.000 6.10 0.00 45.14 4.63
5661 9400 4.812653 AGGTAATATAACACTCCCTCCGT 58.187 43.478 0.00 0.00 0.00 4.69
5662 9401 4.831710 AGGTAATATAACACTCCCTCCGTC 59.168 45.833 0.00 0.00 0.00 4.79
5663 9402 4.021632 GGTAATATAACACTCCCTCCGTCC 60.022 50.000 0.00 0.00 0.00 4.79
5664 9403 2.077687 TATAACACTCCCTCCGTCCC 57.922 55.000 0.00 0.00 0.00 4.46
5665 9404 0.042131 ATAACACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
5666 9405 0.042131 TAACACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
5667 9406 0.042131 AACACTCCCTCCGTCCCATA 59.958 55.000 0.00 0.00 0.00 2.74
5668 9407 0.042131 ACACTCCCTCCGTCCCATAA 59.958 55.000 0.00 0.00 0.00 1.90
5669 9408 1.344087 ACACTCCCTCCGTCCCATAAT 60.344 52.381 0.00 0.00 0.00 1.28
5670 9409 2.090943 ACACTCCCTCCGTCCCATAATA 60.091 50.000 0.00 0.00 0.00 0.98
5671 9410 3.173965 CACTCCCTCCGTCCCATAATAT 58.826 50.000 0.00 0.00 0.00 1.28
5672 9411 4.202749 ACACTCCCTCCGTCCCATAATATA 60.203 45.833 0.00 0.00 0.00 0.86
5673 9412 4.775780 CACTCCCTCCGTCCCATAATATAA 59.224 45.833 0.00 0.00 0.00 0.98
5674 9413 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
5675 9414 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
5676 9415 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
5677 9416 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
5678 9417 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
5679 9418 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
5680 9419 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
5681 9420 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
5682 9421 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
5683 9422 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
5684 9423 7.288672 CGTCCCATAATATAAGAGCGTTTTTC 58.711 38.462 0.00 0.00 0.00 2.29
5685 9424 7.042321 CGTCCCATAATATAAGAGCGTTTTTCA 60.042 37.037 0.00 0.00 0.00 2.69
5686 9425 8.068380 GTCCCATAATATAAGAGCGTTTTTCAC 58.932 37.037 0.00 0.00 0.00 3.18
5707 9446 5.074430 ACGCTAAACTAGTGTGAAAAACG 57.926 39.130 0.00 0.00 46.85 3.60
5708 9447 3.898361 CGCTAAACTAGTGTGAAAAACGC 59.102 43.478 0.00 0.00 39.75 4.84
5710 9449 5.138095 GCTAAACTAGTGTGAAAAACGCTC 58.862 41.667 0.00 0.00 46.98 5.03
5711 9450 5.050295 GCTAAACTAGTGTGAAAAACGCTCT 60.050 40.000 0.00 0.00 46.98 4.09
5712 9451 5.813080 AAACTAGTGTGAAAAACGCTCTT 57.187 34.783 0.00 0.00 46.98 2.85
5713 9452 6.913873 AAACTAGTGTGAAAAACGCTCTTA 57.086 33.333 0.00 0.00 46.98 2.10
5714 9453 7.492352 AAACTAGTGTGAAAAACGCTCTTAT 57.508 32.000 0.00 0.00 46.98 1.73
5715 9454 8.597662 AAACTAGTGTGAAAAACGCTCTTATA 57.402 30.769 0.00 0.00 46.98 0.98
5716 9455 8.773404 AACTAGTGTGAAAAACGCTCTTATAT 57.227 30.769 0.00 0.00 46.98 0.86
5717 9456 8.773404 ACTAGTGTGAAAAACGCTCTTATATT 57.227 30.769 0.00 0.00 46.98 1.28
5718 9457 9.865321 ACTAGTGTGAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 46.98 0.98
5720 9459 8.773404 AGTGTGAAAAACGCTCTTATATTAGT 57.227 30.769 0.00 0.00 46.98 2.24
5721 9460 8.656849 AGTGTGAAAAACGCTCTTATATTAGTG 58.343 33.333 0.00 0.00 46.98 2.74
5722 9461 8.440833 GTGTGAAAAACGCTCTTATATTAGTGT 58.559 33.333 0.00 0.00 38.05 3.55
5723 9462 9.642327 TGTGAAAAACGCTCTTATATTAGTGTA 57.358 29.630 2.49 0.00 35.47 2.90
5725 9464 9.865321 TGAAAAACGCTCTTATATTAGTGTAGT 57.135 29.630 2.49 0.00 35.47 2.73
5727 9466 9.649167 AAAAACGCTCTTATATTAGTGTAGTGT 57.351 29.630 2.49 0.00 35.47 3.55
5728 9467 8.630278 AAACGCTCTTATATTAGTGTAGTGTG 57.370 34.615 2.49 0.00 35.47 3.82
5729 9468 7.563888 ACGCTCTTATATTAGTGTAGTGTGA 57.436 36.000 0.49 0.00 34.79 3.58
5730 9469 7.993101 ACGCTCTTATATTAGTGTAGTGTGAA 58.007 34.615 0.49 0.00 34.79 3.18
5731 9470 8.464404 ACGCTCTTATATTAGTGTAGTGTGAAA 58.536 33.333 0.49 0.00 34.79 2.69
5732 9471 9.297586 CGCTCTTATATTAGTGTAGTGTGAAAA 57.702 33.333 0.00 0.00 0.00 2.29
5753 9492 9.557338 TGAAAAACGTTTTTATATTATGGGACG 57.443 29.630 32.57 0.00 40.21 4.79
5754 9493 8.914328 AAAAACGTTTTTATATTATGGGACGG 57.086 30.769 31.82 0.00 38.50 4.79
5755 9494 7.862512 AAACGTTTTTATATTATGGGACGGA 57.137 32.000 7.96 0.00 33.95 4.69
5756 9495 8.454570 AAACGTTTTTATATTATGGGACGGAT 57.545 30.769 7.96 0.00 33.95 4.18
5757 9496 8.454570 AACGTTTTTATATTATGGGACGGATT 57.545 30.769 0.00 0.00 33.95 3.01
5758 9497 7.867752 ACGTTTTTATATTATGGGACGGATTG 58.132 34.615 0.00 0.00 33.95 2.67
5759 9498 7.716123 ACGTTTTTATATTATGGGACGGATTGA 59.284 33.333 0.00 0.00 33.95 2.57
5760 9499 8.227791 CGTTTTTATATTATGGGACGGATTGAG 58.772 37.037 0.00 0.00 0.00 3.02
5761 9500 9.063615 GTTTTTATATTATGGGACGGATTGAGT 57.936 33.333 0.00 0.00 0.00 3.41
5767 9506 4.891992 ATGGGACGGATTGAGTAATAGG 57.108 45.455 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.228154 GGAAACCGCACAGGGAACT 60.228 57.895 0.00 0.00 46.96 3.01
11 12 1.094785 CATAAGGAAACCGCACAGGG 58.905 55.000 0.00 0.00 46.96 4.45
24 25 2.558286 CCATGGCAGCCGCATAAGG 61.558 63.158 7.03 0.00 41.24 2.69
33 34 1.890979 CTCGATCCACCATGGCAGC 60.891 63.158 13.04 0.00 37.47 5.25
112 113 2.173669 CCATTCCAGTACGCTGCCG 61.174 63.158 0.00 0.00 41.26 5.69
116 117 1.120530 CCTACCCATTCCAGTACGCT 58.879 55.000 0.00 0.00 0.00 5.07
205 228 4.109675 ATCCCCTTTCCGCCACCG 62.110 66.667 0.00 0.00 0.00 4.94
206 229 2.124278 GATCCCCTTTCCGCCACC 60.124 66.667 0.00 0.00 0.00 4.61
207 230 2.513897 CGATCCCCTTTCCGCCAC 60.514 66.667 0.00 0.00 0.00 5.01
208 231 3.792736 CCGATCCCCTTTCCGCCA 61.793 66.667 0.00 0.00 0.00 5.69
209 232 4.564110 CCCGATCCCCTTTCCGCC 62.564 72.222 0.00 0.00 0.00 6.13
211 234 2.624674 ATTGCCCGATCCCCTTTCCG 62.625 60.000 0.00 0.00 0.00 4.30
212 235 1.109323 CATTGCCCGATCCCCTTTCC 61.109 60.000 0.00 0.00 0.00 3.13
213 236 1.109323 CCATTGCCCGATCCCCTTTC 61.109 60.000 0.00 0.00 0.00 2.62
214 237 1.076044 CCATTGCCCGATCCCCTTT 60.076 57.895 0.00 0.00 0.00 3.11
215 238 1.580066 TTCCATTGCCCGATCCCCTT 61.580 55.000 0.00 0.00 0.00 3.95
216 239 2.006415 TTCCATTGCCCGATCCCCT 61.006 57.895 0.00 0.00 0.00 4.79
217 240 1.828224 GTTCCATTGCCCGATCCCC 60.828 63.158 0.00 0.00 0.00 4.81
218 241 0.395724 AAGTTCCATTGCCCGATCCC 60.396 55.000 0.00 0.00 0.00 3.85
219 242 1.405463 GAAAGTTCCATTGCCCGATCC 59.595 52.381 0.00 0.00 0.00 3.36
220 243 2.091541 TGAAAGTTCCATTGCCCGATC 58.908 47.619 0.00 0.00 0.00 3.69
221 244 2.214376 TGAAAGTTCCATTGCCCGAT 57.786 45.000 0.00 0.00 0.00 4.18
222 245 1.818060 CATGAAAGTTCCATTGCCCGA 59.182 47.619 0.00 0.00 0.00 5.14
223 246 1.736696 GCATGAAAGTTCCATTGCCCG 60.737 52.381 0.00 0.00 0.00 6.13
224 247 1.551883 AGCATGAAAGTTCCATTGCCC 59.448 47.619 0.00 0.00 31.18 5.36
225 248 2.613691 CAGCATGAAAGTTCCATTGCC 58.386 47.619 0.00 0.00 39.69 4.52
226 249 2.613691 CCAGCATGAAAGTTCCATTGC 58.386 47.619 0.00 0.00 39.69 3.56
227 250 2.613691 GCCAGCATGAAAGTTCCATTG 58.386 47.619 0.00 0.00 39.69 2.82
228 251 1.203052 CGCCAGCATGAAAGTTCCATT 59.797 47.619 0.00 0.00 39.69 3.16
229 252 0.813184 CGCCAGCATGAAAGTTCCAT 59.187 50.000 0.00 0.00 39.69 3.41
230 253 1.243342 CCGCCAGCATGAAAGTTCCA 61.243 55.000 0.00 0.00 39.69 3.53
231 254 1.244019 ACCGCCAGCATGAAAGTTCC 61.244 55.000 0.00 0.00 39.69 3.62
232 255 0.598065 AACCGCCAGCATGAAAGTTC 59.402 50.000 0.00 0.00 39.69 3.01
233 256 0.314935 CAACCGCCAGCATGAAAGTT 59.685 50.000 0.00 0.00 39.69 2.66
234 257 1.526575 CCAACCGCCAGCATGAAAGT 61.527 55.000 0.00 0.00 39.69 2.66
235 258 1.213537 CCAACCGCCAGCATGAAAG 59.786 57.895 0.00 0.00 39.69 2.62
236 259 2.929903 GCCAACCGCCAGCATGAAA 61.930 57.895 0.00 0.00 39.69 2.69
237 260 3.372730 GCCAACCGCCAGCATGAA 61.373 61.111 0.00 0.00 39.69 2.57
243 266 4.025401 GTGAACGCCAACCGCCAG 62.025 66.667 0.00 0.00 41.76 4.85
261 284 3.151673 GAGATGTAAACCGCCGCGC 62.152 63.158 7.42 0.00 0.00 6.86
262 285 2.522638 GGAGATGTAAACCGCCGCG 61.523 63.158 5.59 5.59 0.00 6.46
263 286 1.153429 AGGAGATGTAAACCGCCGC 60.153 57.895 0.00 0.00 0.00 6.53
264 287 0.810031 CCAGGAGATGTAAACCGCCG 60.810 60.000 0.00 0.00 0.00 6.46
265 288 0.252197 ACCAGGAGATGTAAACCGCC 59.748 55.000 0.00 0.00 0.00 6.13
266 289 1.369625 CACCAGGAGATGTAAACCGC 58.630 55.000 0.00 0.00 0.00 5.68
267 290 1.066143 AGCACCAGGAGATGTAAACCG 60.066 52.381 0.00 0.00 0.00 4.44
268 291 2.027192 TGAGCACCAGGAGATGTAAACC 60.027 50.000 0.00 0.00 0.00 3.27
269 292 3.334583 TGAGCACCAGGAGATGTAAAC 57.665 47.619 0.00 0.00 0.00 2.01
270 293 3.519107 TCATGAGCACCAGGAGATGTAAA 59.481 43.478 0.00 0.00 31.22 2.01
271 294 3.106827 TCATGAGCACCAGGAGATGTAA 58.893 45.455 0.00 0.00 31.22 2.41
272 295 2.750814 TCATGAGCACCAGGAGATGTA 58.249 47.619 0.00 0.00 31.22 2.29
273 296 1.576577 TCATGAGCACCAGGAGATGT 58.423 50.000 0.00 0.00 31.22 3.06
274 297 2.158798 ACATCATGAGCACCAGGAGATG 60.159 50.000 0.09 0.00 39.11 2.90
275 298 2.125233 ACATCATGAGCACCAGGAGAT 58.875 47.619 0.09 0.00 39.11 2.75
276 299 1.576577 ACATCATGAGCACCAGGAGA 58.423 50.000 0.09 0.00 39.11 3.71
277 300 3.548745 TTACATCATGAGCACCAGGAG 57.451 47.619 0.09 0.00 39.11 3.69
278 301 3.264193 AGTTTACATCATGAGCACCAGGA 59.736 43.478 0.09 0.00 40.13 3.86
279 302 3.376234 CAGTTTACATCATGAGCACCAGG 59.624 47.826 0.09 0.00 0.00 4.45
280 303 3.376234 CCAGTTTACATCATGAGCACCAG 59.624 47.826 0.09 0.00 0.00 4.00
281 304 3.346315 CCAGTTTACATCATGAGCACCA 58.654 45.455 0.09 0.00 0.00 4.17
282 305 2.684881 CCCAGTTTACATCATGAGCACC 59.315 50.000 0.09 0.00 0.00 5.01
283 306 3.127548 CACCCAGTTTACATCATGAGCAC 59.872 47.826 0.09 0.00 0.00 4.40
284 307 3.346315 CACCCAGTTTACATCATGAGCA 58.654 45.455 0.09 0.00 0.00 4.26
285 308 2.684881 CCACCCAGTTTACATCATGAGC 59.315 50.000 0.09 0.00 0.00 4.26
286 309 3.691118 CACCACCCAGTTTACATCATGAG 59.309 47.826 0.09 0.00 0.00 2.90
287 310 3.561097 CCACCACCCAGTTTACATCATGA 60.561 47.826 0.00 0.00 0.00 3.07
288 311 2.754552 CCACCACCCAGTTTACATCATG 59.245 50.000 0.00 0.00 0.00 3.07
289 312 2.378547 ACCACCACCCAGTTTACATCAT 59.621 45.455 0.00 0.00 0.00 2.45
290 313 1.777878 ACCACCACCCAGTTTACATCA 59.222 47.619 0.00 0.00 0.00 3.07
291 314 2.433436 GACCACCACCCAGTTTACATC 58.567 52.381 0.00 0.00 0.00 3.06
292 315 1.074889 GGACCACCACCCAGTTTACAT 59.925 52.381 0.00 0.00 35.97 2.29
293 316 0.475044 GGACCACCACCCAGTTTACA 59.525 55.000 0.00 0.00 35.97 2.41
294 317 0.475044 TGGACCACCACCCAGTTTAC 59.525 55.000 0.00 0.00 41.77 2.01
295 318 2.947208 TGGACCACCACCCAGTTTA 58.053 52.632 0.00 0.00 41.77 2.01
296 319 3.762616 TGGACCACCACCCAGTTT 58.237 55.556 0.00 0.00 41.77 2.66
321 344 2.743928 GGCAACCGGCTGAGACTG 60.744 66.667 9.57 0.00 44.01 3.51
592 645 6.364165 CAGATGCTAACCAGTCAAAACAATTG 59.636 38.462 3.24 3.24 0.00 2.32
1230 1443 2.467826 GCCAGAGCAAGCCGATGAC 61.468 63.158 0.00 0.00 39.53 3.06
1268 1481 1.276421 CGTGTCCCCTGTTGAGAAGAT 59.724 52.381 0.00 0.00 0.00 2.40
1699 1914 4.578928 TGTCTCCTTAAGGCTGTTTTCAAC 59.421 41.667 17.32 5.83 34.44 3.18
2000 2219 4.272991 TGGAAAACATGTGCAGAAAATTGC 59.727 37.500 0.00 0.00 44.33 3.56
2028 2247 1.891150 AGAGGCAAAACCATGCTGAAG 59.109 47.619 0.00 0.00 45.68 3.02
2098 2319 5.647589 TGATGCTTCAGATGAATTTCAAGC 58.352 37.500 11.40 11.40 33.01 4.01
2205 2435 4.272489 CAGCATTTGTTATCTCAGGGGAA 58.728 43.478 0.00 0.00 0.00 3.97
2252 2482 2.058595 CGGATGGAACGGAGGGAGT 61.059 63.158 0.00 0.00 0.00 3.85
2253 2483 1.614241 AACGGATGGAACGGAGGGAG 61.614 60.000 0.00 0.00 35.23 4.30
2254 2484 1.196104 AAACGGATGGAACGGAGGGA 61.196 55.000 0.00 0.00 35.23 4.20
2255 2485 1.024579 CAAACGGATGGAACGGAGGG 61.025 60.000 0.00 0.00 35.23 4.30
2256 2486 0.036765 TCAAACGGATGGAACGGAGG 60.037 55.000 0.00 0.00 35.23 4.30
2257 2487 1.359848 CTCAAACGGATGGAACGGAG 58.640 55.000 0.00 0.00 35.23 4.63
2258 2488 0.672401 GCTCAAACGGATGGAACGGA 60.672 55.000 0.00 0.00 35.23 4.69
2259 2489 1.794222 GCTCAAACGGATGGAACGG 59.206 57.895 0.00 0.00 35.23 4.44
2260 2490 1.011968 TCGCTCAAACGGATGGAACG 61.012 55.000 0.00 0.00 37.36 3.95
2261 2491 0.442699 GTCGCTCAAACGGATGGAAC 59.557 55.000 0.00 0.00 0.00 3.62
2262 2492 0.034198 TGTCGCTCAAACGGATGGAA 59.966 50.000 0.00 0.00 0.00 3.53
2263 2493 0.034198 TTGTCGCTCAAACGGATGGA 59.966 50.000 0.00 0.00 32.64 3.41
2264 2494 0.165944 GTTGTCGCTCAAACGGATGG 59.834 55.000 0.00 0.00 37.81 3.51
2265 2495 1.148310 AGTTGTCGCTCAAACGGATG 58.852 50.000 0.00 0.00 37.81 3.51
2266 2496 2.736144 TAGTTGTCGCTCAAACGGAT 57.264 45.000 0.00 0.00 37.81 4.18
2267 2497 2.512485 TTAGTTGTCGCTCAAACGGA 57.488 45.000 0.00 0.00 37.81 4.69
2268 2498 4.260212 CCATATTAGTTGTCGCTCAAACGG 60.260 45.833 0.00 0.00 37.81 4.44
2269 2499 4.565166 TCCATATTAGTTGTCGCTCAAACG 59.435 41.667 0.00 0.00 37.81 3.60
2270 2500 5.502544 GCTCCATATTAGTTGTCGCTCAAAC 60.503 44.000 0.00 0.00 37.81 2.93
2271 2501 4.570772 GCTCCATATTAGTTGTCGCTCAAA 59.429 41.667 0.00 0.00 37.81 2.69
2272 2502 4.119862 GCTCCATATTAGTTGTCGCTCAA 58.880 43.478 0.00 0.00 0.00 3.02
2273 2503 3.717707 GCTCCATATTAGTTGTCGCTCA 58.282 45.455 0.00 0.00 0.00 4.26
2274 2504 2.726760 CGCTCCATATTAGTTGTCGCTC 59.273 50.000 0.00 0.00 0.00 5.03
2275 2505 2.545952 CCGCTCCATATTAGTTGTCGCT 60.546 50.000 0.00 0.00 0.00 4.93
2276 2506 1.792949 CCGCTCCATATTAGTTGTCGC 59.207 52.381 0.00 0.00 0.00 5.19
2277 2507 3.309388 CTCCGCTCCATATTAGTTGTCG 58.691 50.000 0.00 0.00 0.00 4.35
2278 2508 3.555168 CCCTCCGCTCCATATTAGTTGTC 60.555 52.174 0.00 0.00 0.00 3.18
2279 2509 2.368875 CCCTCCGCTCCATATTAGTTGT 59.631 50.000 0.00 0.00 0.00 3.32
2280 2510 2.632996 TCCCTCCGCTCCATATTAGTTG 59.367 50.000 0.00 0.00 0.00 3.16
2281 2511 2.900546 CTCCCTCCGCTCCATATTAGTT 59.099 50.000 0.00 0.00 0.00 2.24
2282 2512 2.158295 ACTCCCTCCGCTCCATATTAGT 60.158 50.000 0.00 0.00 0.00 2.24
2283 2513 2.530701 ACTCCCTCCGCTCCATATTAG 58.469 52.381 0.00 0.00 0.00 1.73
2284 2514 2.696526 ACTCCCTCCGCTCCATATTA 57.303 50.000 0.00 0.00 0.00 0.98
2285 2515 2.696526 TACTCCCTCCGCTCCATATT 57.303 50.000 0.00 0.00 0.00 1.28
2286 2516 2.930109 ATACTCCCTCCGCTCCATAT 57.070 50.000 0.00 0.00 0.00 1.78
2287 2517 2.291411 GGTATACTCCCTCCGCTCCATA 60.291 54.545 2.25 0.00 0.00 2.74
2288 2518 1.550409 GGTATACTCCCTCCGCTCCAT 60.550 57.143 2.25 0.00 0.00 3.41
2289 2519 0.178970 GGTATACTCCCTCCGCTCCA 60.179 60.000 2.25 0.00 0.00 3.86
2290 2520 0.178970 TGGTATACTCCCTCCGCTCC 60.179 60.000 2.25 0.00 0.00 4.70
2291 2521 0.960286 GTGGTATACTCCCTCCGCTC 59.040 60.000 2.25 0.00 0.00 5.03
2292 2522 0.556747 AGTGGTATACTCCCTCCGCT 59.443 55.000 2.25 0.00 33.17 5.52
2293 2523 2.283145 TAGTGGTATACTCCCTCCGC 57.717 55.000 2.25 0.00 40.89 5.54
2294 2524 5.589452 GTCATATAGTGGTATACTCCCTCCG 59.411 48.000 2.25 0.00 40.89 4.63
2295 2525 6.733509 AGTCATATAGTGGTATACTCCCTCC 58.266 44.000 2.25 0.00 40.89 4.30
2296 2526 7.889073 TCAAGTCATATAGTGGTATACTCCCTC 59.111 40.741 2.25 0.00 40.89 4.30
2297 2527 7.766628 TCAAGTCATATAGTGGTATACTCCCT 58.233 38.462 2.25 0.00 40.89 4.20
2298 2528 8.418597 TTCAAGTCATATAGTGGTATACTCCC 57.581 38.462 2.25 0.00 40.89 4.30
2444 2678 1.303317 GCCCCTGTCATGGTTCGTT 60.303 57.895 0.00 0.00 0.00 3.85
2571 2826 4.690122 ACGCTTTTTGACACTAGTGTAGT 58.310 39.130 27.98 14.12 45.05 2.73
2572 2827 4.982916 AGACGCTTTTTGACACTAGTGTAG 59.017 41.667 27.98 20.94 45.05 2.74
2573 2828 4.940463 AGACGCTTTTTGACACTAGTGTA 58.060 39.130 27.98 11.50 45.05 2.90
2575 2830 4.795970 AAGACGCTTTTTGACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
2576 2831 5.353938 TGTAAGACGCTTTTTGACACTAGT 58.646 37.500 0.00 0.00 0.00 2.57
2577 2832 5.900339 TGTAAGACGCTTTTTGACACTAG 57.100 39.130 0.00 0.00 0.00 2.57
2578 2833 6.854496 AATGTAAGACGCTTTTTGACACTA 57.146 33.333 0.00 0.00 0.00 2.74
2579 2834 5.751243 AATGTAAGACGCTTTTTGACACT 57.249 34.783 0.00 0.00 0.00 3.55
2580 2835 6.523201 CCATAATGTAAGACGCTTTTTGACAC 59.477 38.462 0.00 0.00 0.00 3.67
2581 2836 6.348950 CCCATAATGTAAGACGCTTTTTGACA 60.349 38.462 0.00 0.00 0.00 3.58
2582 2837 6.027749 CCCATAATGTAAGACGCTTTTTGAC 58.972 40.000 0.00 0.00 0.00 3.18
2583 2838 5.941058 TCCCATAATGTAAGACGCTTTTTGA 59.059 36.000 0.00 0.00 0.00 2.69
2584 2839 6.189677 TCCCATAATGTAAGACGCTTTTTG 57.810 37.500 0.00 0.00 0.00 2.44
2585 2840 6.183360 CCATCCCATAATGTAAGACGCTTTTT 60.183 38.462 0.00 0.00 0.00 1.94
2586 2841 5.299279 CCATCCCATAATGTAAGACGCTTTT 59.701 40.000 0.00 0.00 0.00 2.27
2587 2842 4.821805 CCATCCCATAATGTAAGACGCTTT 59.178 41.667 0.00 0.00 0.00 3.51
2588 2843 4.102524 TCCATCCCATAATGTAAGACGCTT 59.897 41.667 0.00 0.00 0.00 4.68
2589 2844 3.646162 TCCATCCCATAATGTAAGACGCT 59.354 43.478 0.00 0.00 0.00 5.07
2590 2845 3.997021 CTCCATCCCATAATGTAAGACGC 59.003 47.826 0.00 0.00 0.00 5.19
2591 2846 4.563580 CCCTCCATCCCATAATGTAAGACG 60.564 50.000 0.00 0.00 0.00 4.18
2592 2847 4.597507 TCCCTCCATCCCATAATGTAAGAC 59.402 45.833 0.00 0.00 0.00 3.01
2593 2848 4.838403 TCCCTCCATCCCATAATGTAAGA 58.162 43.478 0.00 0.00 0.00 2.10
2594 2849 4.599241 ACTCCCTCCATCCCATAATGTAAG 59.401 45.833 0.00 0.00 0.00 2.34
2595 2850 4.577096 ACTCCCTCCATCCCATAATGTAA 58.423 43.478 0.00 0.00 0.00 2.41
2596 2851 4.228237 ACTCCCTCCATCCCATAATGTA 57.772 45.455 0.00 0.00 0.00 2.29
2597 2852 3.080660 ACTCCCTCCATCCCATAATGT 57.919 47.619 0.00 0.00 0.00 2.71
2598 2853 4.171234 AGTACTCCCTCCATCCCATAATG 58.829 47.826 0.00 0.00 0.00 1.90
2599 2854 4.510303 AGTACTCCCTCCATCCCATAAT 57.490 45.455 0.00 0.00 0.00 1.28
2600 2855 5.633473 ATAGTACTCCCTCCATCCCATAA 57.367 43.478 0.00 0.00 0.00 1.90
2601 2856 6.945322 ATATAGTACTCCCTCCATCCCATA 57.055 41.667 0.00 0.00 0.00 2.74
2602 2857 5.840547 ATATAGTACTCCCTCCATCCCAT 57.159 43.478 0.00 0.00 0.00 4.00
2603 2858 6.945322 ATATATAGTACTCCCTCCATCCCA 57.055 41.667 0.00 0.00 0.00 4.37
2604 2859 8.512813 ACTAATATATAGTACTCCCTCCATCCC 58.487 40.741 0.00 0.00 0.00 3.85
2605 2860 9.577222 GACTAATATATAGTACTCCCTCCATCC 57.423 40.741 0.00 0.00 0.00 3.51
2608 2863 8.558312 CCAGACTAATATATAGTACTCCCTCCA 58.442 40.741 0.00 0.00 0.00 3.86
2609 2864 7.503230 GCCAGACTAATATATAGTACTCCCTCC 59.497 44.444 0.00 0.00 0.00 4.30
2610 2865 7.503230 GGCCAGACTAATATATAGTACTCCCTC 59.497 44.444 0.00 0.00 0.00 4.30
2611 2866 7.186779 AGGCCAGACTAATATATAGTACTCCCT 59.813 40.741 5.01 0.00 0.00 4.20
2612 2867 7.355890 AGGCCAGACTAATATATAGTACTCCC 58.644 42.308 5.01 0.00 0.00 4.30
2613 2868 8.688151 CAAGGCCAGACTAATATATAGTACTCC 58.312 40.741 5.01 0.00 0.00 3.85
2614 2869 9.245481 ACAAGGCCAGACTAATATATAGTACTC 57.755 37.037 5.01 0.00 0.00 2.59
2618 2873 9.824216 TCTTACAAGGCCAGACTAATATATAGT 57.176 33.333 5.01 0.00 0.00 2.12
2702 2960 6.128254 GGAGGAACTTAAACTGCAATACTGTC 60.128 42.308 0.00 0.00 41.55 3.51
2826 3253 4.141756 ACTGGTGCTGATTTATCTGAGGAG 60.142 45.833 1.34 0.00 0.00 3.69
2827 3254 3.776969 ACTGGTGCTGATTTATCTGAGGA 59.223 43.478 1.34 0.00 0.00 3.71
2839 3269 1.098869 TTTTCGCAAACTGGTGCTGA 58.901 45.000 4.43 1.60 42.62 4.26
2873 3304 3.187700 CCGCACTAGCCAAAGTACTAAG 58.812 50.000 0.00 0.00 37.52 2.18
2893 3324 5.104900 TCCTGTAAATCTCCTTCTGCTAACC 60.105 44.000 0.00 0.00 0.00 2.85
2921 3352 4.630069 ACTCAACTAATTACATGTGTCCGC 59.370 41.667 9.11 0.00 0.00 5.54
3074 4820 3.855950 GTGTCCGTACTTCCTGTAAATCG 59.144 47.826 0.00 0.00 32.25 3.34
3103 4850 6.054295 ACCCGTACTATCACTACTCAACTAG 58.946 44.000 0.00 0.00 0.00 2.57
3194 5203 6.218019 ACTACTATCACTACTCAGCTACTCG 58.782 44.000 0.00 0.00 0.00 4.18
3333 5342 9.460019 TGGAAATGACACACTCAATTATAATCA 57.540 29.630 0.00 0.00 30.60 2.57
3377 5386 7.121315 AGGTATTTCTGTTAAGTTCATCAAGGC 59.879 37.037 0.00 0.00 0.00 4.35
3729 5738 2.995939 TGCAAGCAGAACTGACTATTCG 59.004 45.455 5.97 0.00 0.00 3.34
3776 5785 6.896860 TGTTCCCATCATTGTCTTGGATATTT 59.103 34.615 0.00 0.00 31.94 1.40
4465 6496 1.303236 TGCCCGATGTTGACCCAAG 60.303 57.895 0.00 0.00 0.00 3.61
4492 6523 6.926313 ACAAACCTAGTGCAAAAGTTGTTAA 58.074 32.000 0.00 0.00 0.00 2.01
4548 8239 0.815213 TGACGCAGATAGCAATGGCC 60.815 55.000 0.00 0.00 46.13 5.36
4792 8496 5.981174 TGATGCATCTTCAAGTCATGAGTA 58.019 37.500 26.32 0.00 39.77 2.59
4820 8527 6.911250 AAACATCTCCCGGAAAAAGTTATT 57.089 33.333 0.73 0.00 0.00 1.40
4834 8541 2.678336 GGACGTCCATGAAAACATCTCC 59.322 50.000 29.75 0.00 35.64 3.71
4848 8555 1.077716 CCAAATCCCCAGGACGTCC 60.078 63.158 27.67 27.67 32.98 4.79
4897 8605 6.229561 ACGAAAAGATTCCGAAGAGAAAAG 57.770 37.500 0.00 0.00 31.52 2.27
5088 8801 9.891828 GAAATATATATTTGCGTGTGGATTTGA 57.108 29.630 22.48 0.00 36.13 2.69
5110 8823 3.195825 CGAGGGAGTAGACAGGTTGAAAT 59.804 47.826 0.00 0.00 0.00 2.17
5120 8833 2.725221 TAGGAACCGAGGGAGTAGAC 57.275 55.000 0.00 0.00 0.00 2.59
5145 8858 9.479549 TTGATATTGAAATCTCTAAAAAGGCCT 57.520 29.630 0.00 0.00 0.00 5.19
5146 8859 9.521503 GTTGATATTGAAATCTCTAAAAAGGCC 57.478 33.333 0.00 0.00 0.00 5.19
5155 8868 9.698309 CCGTATGTAGTTGATATTGAAATCTCT 57.302 33.333 0.00 0.00 0.00 3.10
5156 8869 9.692749 TCCGTATGTAGTTGATATTGAAATCTC 57.307 33.333 0.00 0.00 0.00 2.75
5157 8870 9.698309 CTCCGTATGTAGTTGATATTGAAATCT 57.302 33.333 0.00 0.00 0.00 2.40
5158 8871 9.477484 ACTCCGTATGTAGTTGATATTGAAATC 57.523 33.333 0.00 0.00 0.00 2.17
5166 8879 9.961265 CTCATTTTACTCCGTATGTAGTTGATA 57.039 33.333 0.00 0.00 0.00 2.15
5167 8880 8.475639 ACTCATTTTACTCCGTATGTAGTTGAT 58.524 33.333 0.00 0.00 0.00 2.57
5168 8881 7.758076 CACTCATTTTACTCCGTATGTAGTTGA 59.242 37.037 0.00 0.00 0.00 3.18
5169 8882 7.758076 TCACTCATTTTACTCCGTATGTAGTTG 59.242 37.037 0.00 0.00 0.00 3.16
5170 8883 7.833786 TCACTCATTTTACTCCGTATGTAGTT 58.166 34.615 0.00 0.00 0.00 2.24
5171 8884 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
5172 8885 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
5173 8886 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
5174 8887 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
5175 8888 8.969267 GTAGATTCACTCATTTTACTCCGTATG 58.031 37.037 0.00 0.00 0.00 2.39
5176 8889 8.692710 TGTAGATTCACTCATTTTACTCCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
5177 8890 7.972277 GTGTAGATTCACTCATTTTACTCCGTA 59.028 37.037 0.00 0.00 35.68 4.02
5178 8891 6.812160 GTGTAGATTCACTCATTTTACTCCGT 59.188 38.462 0.00 0.00 35.68 4.69
5179 8892 7.036220 AGTGTAGATTCACTCATTTTACTCCG 58.964 38.462 0.00 0.00 44.07 4.63
5180 8893 8.779354 AAGTGTAGATTCACTCATTTTACTCC 57.221 34.615 0.00 0.00 46.25 3.85
5182 8895 9.778741 TCAAAGTGTAGATTCACTCATTTTACT 57.221 29.630 0.00 0.00 46.25 2.24
5188 8901 9.388506 CCTATTTCAAAGTGTAGATTCACTCAT 57.611 33.333 0.00 0.00 46.25 2.90
5189 8902 8.375506 ACCTATTTCAAAGTGTAGATTCACTCA 58.624 33.333 0.00 0.00 46.25 3.41
5190 8903 8.779354 ACCTATTTCAAAGTGTAGATTCACTC 57.221 34.615 0.00 0.00 46.25 3.51
5192 8905 8.779354 AGACCTATTTCAAAGTGTAGATTCAC 57.221 34.615 0.00 0.00 38.46 3.18
5219 8932 9.833917 TTGTACGGAACATGAATATTTGGTATA 57.166 29.630 0.00 0.00 38.10 1.47
5220 8933 8.740123 TTGTACGGAACATGAATATTTGGTAT 57.260 30.769 0.00 0.00 38.10 2.73
5221 8934 8.740123 ATTGTACGGAACATGAATATTTGGTA 57.260 30.769 0.00 0.00 38.10 3.25
5222 8935 7.639113 ATTGTACGGAACATGAATATTTGGT 57.361 32.000 0.00 0.00 38.10 3.67
5230 8943 9.828852 GTGTAAAATTATTGTACGGAACATGAA 57.171 29.630 0.00 0.00 38.10 2.57
5231 8944 9.000486 TGTGTAAAATTATTGTACGGAACATGA 58.000 29.630 0.00 0.00 38.10 3.07
5232 8945 9.613957 TTGTGTAAAATTATTGTACGGAACATG 57.386 29.630 1.39 0.00 38.10 3.21
5233 8946 9.615295 GTTGTGTAAAATTATTGTACGGAACAT 57.385 29.630 11.33 0.00 38.10 2.71
5234 8947 8.618677 TGTTGTGTAAAATTATTGTACGGAACA 58.381 29.630 13.44 13.44 35.88 3.18
5235 8948 9.448294 TTGTTGTGTAAAATTATTGTACGGAAC 57.552 29.630 10.11 10.11 0.00 3.62
5283 8996 9.396022 ACGAAGATTTGGAATAATATGACAACT 57.604 29.630 0.00 0.00 0.00 3.16
5284 8997 9.438291 CACGAAGATTTGGAATAATATGACAAC 57.562 33.333 0.00 0.00 0.00 3.32
5285 8998 9.173021 ACACGAAGATTTGGAATAATATGACAA 57.827 29.630 0.00 0.00 0.00 3.18
5286 8999 8.731275 ACACGAAGATTTGGAATAATATGACA 57.269 30.769 0.00 0.00 0.00 3.58
5287 9000 9.651718 GAACACGAAGATTTGGAATAATATGAC 57.348 33.333 0.00 0.00 0.00 3.06
5288 9001 8.836413 GGAACACGAAGATTTGGAATAATATGA 58.164 33.333 0.00 0.00 0.00 2.15
5289 9002 8.620416 TGGAACACGAAGATTTGGAATAATATG 58.380 33.333 0.00 0.00 0.00 1.78
5290 9003 8.746052 TGGAACACGAAGATTTGGAATAATAT 57.254 30.769 0.00 0.00 0.00 1.28
5310 9023 8.506168 TCTAATGAGATTTGGTTGTATGGAAC 57.494 34.615 0.00 0.00 0.00 3.62
5311 9024 9.699410 ATTCTAATGAGATTTGGTTGTATGGAA 57.301 29.630 0.00 0.00 0.00 3.53
5332 9045 9.737844 TGCAGGAATATGTTGCAATATATTCTA 57.262 29.630 39.12 28.76 44.13 2.10
5333 9046 8.640063 TGCAGGAATATGTTGCAATATATTCT 57.360 30.769 39.12 30.20 44.13 2.40
5342 9055 4.021280 ACATTGTTGCAGGAATATGTTGCA 60.021 37.500 5.27 5.27 45.28 4.08
5343 9056 4.327898 CACATTGTTGCAGGAATATGTTGC 59.672 41.667 3.55 0.71 38.30 4.17
5344 9057 4.327898 GCACATTGTTGCAGGAATATGTTG 59.672 41.667 3.55 2.49 42.49 3.33
5345 9058 4.497300 GCACATTGTTGCAGGAATATGTT 58.503 39.130 3.55 0.00 42.49 2.71
5346 9059 3.427909 CGCACATTGTTGCAGGAATATGT 60.428 43.478 10.41 1.13 43.15 2.29
5347 9060 3.110358 CGCACATTGTTGCAGGAATATG 58.890 45.455 10.41 0.00 43.15 1.78
5348 9061 2.099592 CCGCACATTGTTGCAGGAATAT 59.900 45.455 10.41 0.00 43.15 1.28
5349 9062 1.472082 CCGCACATTGTTGCAGGAATA 59.528 47.619 10.41 0.00 43.15 1.75
5350 9063 0.244450 CCGCACATTGTTGCAGGAAT 59.756 50.000 10.41 0.00 43.15 3.01
5351 9064 1.659233 CCGCACATTGTTGCAGGAA 59.341 52.632 10.41 0.00 43.15 3.36
5352 9065 2.267351 CCCGCACATTGTTGCAGGA 61.267 57.895 15.86 0.00 41.95 3.86
5353 9066 2.259204 CCCGCACATTGTTGCAGG 59.741 61.111 10.41 10.92 43.15 4.85
5354 9067 2.086251 AACCCCGCACATTGTTGCAG 62.086 55.000 10.41 1.52 43.15 4.41
5355 9068 1.680522 AAACCCCGCACATTGTTGCA 61.681 50.000 10.41 0.00 43.15 4.08
5356 9069 1.068921 AAACCCCGCACATTGTTGC 59.931 52.632 0.00 0.00 39.28 4.17
5357 9070 0.387202 TCAAACCCCGCACATTGTTG 59.613 50.000 0.00 0.00 0.00 3.33
5358 9071 1.272212 GATCAAACCCCGCACATTGTT 59.728 47.619 0.00 0.00 0.00 2.83
5359 9072 0.887933 GATCAAACCCCGCACATTGT 59.112 50.000 0.00 0.00 0.00 2.71
5360 9073 1.176527 AGATCAAACCCCGCACATTG 58.823 50.000 0.00 0.00 0.00 2.82
5361 9074 2.026262 ACTAGATCAAACCCCGCACATT 60.026 45.455 0.00 0.00 0.00 2.71
5362 9075 1.559682 ACTAGATCAAACCCCGCACAT 59.440 47.619 0.00 0.00 0.00 3.21
5363 9076 0.981183 ACTAGATCAAACCCCGCACA 59.019 50.000 0.00 0.00 0.00 4.57
5364 9077 2.973694 TACTAGATCAAACCCCGCAC 57.026 50.000 0.00 0.00 0.00 5.34
5365 9078 3.305720 AGATACTAGATCAAACCCCGCA 58.694 45.455 0.00 0.00 0.00 5.69
5366 9079 5.243283 TCTTAGATACTAGATCAAACCCCGC 59.757 44.000 0.00 0.00 0.00 6.13
5367 9080 6.896021 TCTTAGATACTAGATCAAACCCCG 57.104 41.667 0.00 0.00 0.00 5.73
5368 9081 7.146648 CGTTCTTAGATACTAGATCAAACCCC 58.853 42.308 0.00 0.00 0.00 4.95
5369 9082 7.014038 TCCGTTCTTAGATACTAGATCAAACCC 59.986 40.741 0.00 0.00 0.00 4.11
5370 9083 7.938715 TCCGTTCTTAGATACTAGATCAAACC 58.061 38.462 0.00 0.00 0.00 3.27
5371 9084 8.077386 CCTCCGTTCTTAGATACTAGATCAAAC 58.923 40.741 0.00 0.00 0.00 2.93
5372 9085 7.230913 CCCTCCGTTCTTAGATACTAGATCAAA 59.769 40.741 0.00 0.00 0.00 2.69
5373 9086 6.715718 CCCTCCGTTCTTAGATACTAGATCAA 59.284 42.308 0.00 0.00 0.00 2.57
5374 9087 6.044054 TCCCTCCGTTCTTAGATACTAGATCA 59.956 42.308 0.00 0.00 0.00 2.92
5375 9088 6.474630 TCCCTCCGTTCTTAGATACTAGATC 58.525 44.000 0.00 0.00 0.00 2.75
5376 9089 6.044637 ACTCCCTCCGTTCTTAGATACTAGAT 59.955 42.308 0.00 0.00 0.00 1.98
5377 9090 5.369110 ACTCCCTCCGTTCTTAGATACTAGA 59.631 44.000 0.00 0.00 0.00 2.43
5378 9091 5.623169 ACTCCCTCCGTTCTTAGATACTAG 58.377 45.833 0.00 0.00 0.00 2.57
5379 9092 5.643421 ACTCCCTCCGTTCTTAGATACTA 57.357 43.478 0.00 0.00 0.00 1.82
5380 9093 4.523168 ACTCCCTCCGTTCTTAGATACT 57.477 45.455 0.00 0.00 0.00 2.12
5381 9094 5.591877 TGTTACTCCCTCCGTTCTTAGATAC 59.408 44.000 0.00 0.00 0.00 2.24
5382 9095 5.759059 TGTTACTCCCTCCGTTCTTAGATA 58.241 41.667 0.00 0.00 0.00 1.98
5383 9096 4.607239 TGTTACTCCCTCCGTTCTTAGAT 58.393 43.478 0.00 0.00 0.00 1.98
5384 9097 4.015084 CTGTTACTCCCTCCGTTCTTAGA 58.985 47.826 0.00 0.00 0.00 2.10
5385 9098 3.762823 ACTGTTACTCCCTCCGTTCTTAG 59.237 47.826 0.00 0.00 0.00 2.18
5386 9099 3.771216 ACTGTTACTCCCTCCGTTCTTA 58.229 45.455 0.00 0.00 0.00 2.10
5387 9100 2.606378 ACTGTTACTCCCTCCGTTCTT 58.394 47.619 0.00 0.00 0.00 2.52
5388 9101 2.305858 ACTGTTACTCCCTCCGTTCT 57.694 50.000 0.00 0.00 0.00 3.01
5389 9102 3.397849 AAACTGTTACTCCCTCCGTTC 57.602 47.619 0.00 0.00 0.00 3.95
5390 9103 6.803366 ATATAAACTGTTACTCCCTCCGTT 57.197 37.500 0.00 0.00 0.00 4.44
5391 9104 6.803366 AATATAAACTGTTACTCCCTCCGT 57.197 37.500 0.00 0.00 0.00 4.69
5392 9105 9.774413 ATAAAATATAAACTGTTACTCCCTCCG 57.226 33.333 0.00 0.00 0.00 4.63
5415 9128 8.924303 AGTATCAAGGCAGTAGTGACATTATAA 58.076 33.333 6.10 0.00 31.79 0.98
5424 9137 2.939103 GGCAAGTATCAAGGCAGTAGTG 59.061 50.000 0.00 0.00 0.00 2.74
5503 9216 3.243068 GGTTGACACAACATTGGACACTC 60.243 47.826 14.89 0.00 0.00 3.51
5536 9265 4.281435 TGGGATCGCGTAAAATATGTCCTA 59.719 41.667 5.77 0.00 0.00 2.94
5553 9282 3.326747 AGCGCGATATTAAAGTGGGATC 58.673 45.455 12.10 0.00 0.00 3.36
5559 9288 5.734855 ACATTTGAGCGCGATATTAAAGT 57.265 34.783 12.10 0.00 0.00 2.66
5561 9290 9.509855 AAATAAACATTTGAGCGCGATATTAAA 57.490 25.926 12.10 6.85 0.00 1.52
5565 9294 7.861630 AGTAAATAAACATTTGAGCGCGATAT 58.138 30.769 12.10 0.00 0.00 1.63
5594 9323 4.952335 AGATTAGCTTTTTGGGACTGATGG 59.048 41.667 0.00 0.00 0.00 3.51
5599 9328 6.779860 TGTCTTAGATTAGCTTTTTGGGACT 58.220 36.000 0.00 0.00 0.00 3.85
5650 9389 1.424638 ATTATGGGACGGAGGGAGTG 58.575 55.000 0.00 0.00 0.00 3.51
5651 9390 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
5652 9391 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
5653 9392 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
5654 9393 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
5655 9394 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
5656 9395 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
5657 9396 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
5658 9397 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
5659 9398 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
5660 9399 8.068380 GTGAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
5661 9400 7.042321 CGTGAAAAACGCTCTTATATTATGGGA 60.042 37.037 0.00 0.00 46.99 4.37
5662 9401 7.069569 CGTGAAAAACGCTCTTATATTATGGG 58.930 38.462 0.00 0.00 46.99 4.00
5678 9417 6.039781 TCACACTAGTTTAGCGTGAAAAAC 57.960 37.500 9.80 0.00 42.82 2.43
5683 9422 5.276489 CGTTTTTCACACTAGTTTAGCGTGA 60.276 40.000 8.49 8.49 43.74 4.35
5684 9423 4.896238 CGTTTTTCACACTAGTTTAGCGTG 59.104 41.667 0.00 0.00 39.54 5.34
5685 9424 4.551410 GCGTTTTTCACACTAGTTTAGCGT 60.551 41.667 0.00 0.00 0.00 5.07
5686 9425 3.898361 GCGTTTTTCACACTAGTTTAGCG 59.102 43.478 0.00 0.00 0.00 4.26
5687 9426 5.050295 AGAGCGTTTTTCACACTAGTTTAGC 60.050 40.000 0.00 0.00 0.00 3.09
5688 9427 6.526566 AGAGCGTTTTTCACACTAGTTTAG 57.473 37.500 0.00 0.00 0.00 1.85
5689 9428 6.913873 AAGAGCGTTTTTCACACTAGTTTA 57.086 33.333 0.00 0.00 0.00 2.01
5690 9429 5.813080 AAGAGCGTTTTTCACACTAGTTT 57.187 34.783 0.00 0.00 0.00 2.66
5691 9430 8.773404 ATATAAGAGCGTTTTTCACACTAGTT 57.227 30.769 0.00 0.00 0.00 2.24
5692 9431 8.773404 AATATAAGAGCGTTTTTCACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
5694 9433 9.865321 ACTAATATAAGAGCGTTTTTCACACTA 57.135 29.630 0.00 0.00 0.00 2.74
5695 9434 8.656849 CACTAATATAAGAGCGTTTTTCACACT 58.343 33.333 0.00 0.00 0.00 3.55
5696 9435 8.440833 ACACTAATATAAGAGCGTTTTTCACAC 58.559 33.333 0.00 0.00 0.00 3.82
5697 9436 8.542497 ACACTAATATAAGAGCGTTTTTCACA 57.458 30.769 0.00 0.00 0.00 3.58
5699 9438 9.865321 ACTACACTAATATAAGAGCGTTTTTCA 57.135 29.630 0.00 0.00 0.00 2.69
5701 9440 9.649167 ACACTACACTAATATAAGAGCGTTTTT 57.351 29.630 0.00 0.00 0.00 1.94
5702 9441 9.084164 CACACTACACTAATATAAGAGCGTTTT 57.916 33.333 0.00 0.00 0.00 2.43
5703 9442 8.464404 TCACACTACACTAATATAAGAGCGTTT 58.536 33.333 0.00 0.00 0.00 3.60
5704 9443 7.993101 TCACACTACACTAATATAAGAGCGTT 58.007 34.615 0.00 0.00 0.00 4.84
5705 9444 7.563888 TCACACTACACTAATATAAGAGCGT 57.436 36.000 0.00 0.00 0.00 5.07
5706 9445 8.851960 TTTCACACTACACTAATATAAGAGCG 57.148 34.615 0.00 0.00 0.00 5.03
5727 9466 9.557338 CGTCCCATAATATAAAAACGTTTTTCA 57.443 29.630 35.13 25.77 40.53 2.69
5728 9467 9.012448 CCGTCCCATAATATAAAAACGTTTTTC 57.988 33.333 35.13 18.68 40.53 2.29
5729 9468 8.738106 TCCGTCCCATAATATAAAAACGTTTTT 58.262 29.630 33.94 33.94 42.51 1.94
5730 9469 8.278729 TCCGTCCCATAATATAAAAACGTTTT 57.721 30.769 20.26 20.26 0.00 2.43
5731 9470 7.862512 TCCGTCCCATAATATAAAAACGTTT 57.137 32.000 7.96 7.96 0.00 3.60
5732 9471 8.347035 CAATCCGTCCCATAATATAAAAACGTT 58.653 33.333 0.00 0.00 0.00 3.99
5733 9472 7.716123 TCAATCCGTCCCATAATATAAAAACGT 59.284 33.333 0.00 0.00 0.00 3.99
5734 9473 8.090250 TCAATCCGTCCCATAATATAAAAACG 57.910 34.615 0.00 0.00 0.00 3.60
5735 9474 9.063615 ACTCAATCCGTCCCATAATATAAAAAC 57.936 33.333 0.00 0.00 0.00 2.43
5741 9480 8.705594 CCTATTACTCAATCCGTCCCATAATAT 58.294 37.037 0.00 0.00 0.00 1.28
5742 9481 8.074613 CCTATTACTCAATCCGTCCCATAATA 57.925 38.462 0.00 0.00 0.00 0.98
5743 9482 6.947464 CCTATTACTCAATCCGTCCCATAAT 58.053 40.000 0.00 0.00 0.00 1.28
5744 9483 6.354794 CCTATTACTCAATCCGTCCCATAA 57.645 41.667 0.00 0.00 0.00 1.90
5745 9484 5.995565 CCTATTACTCAATCCGTCCCATA 57.004 43.478 0.00 0.00 0.00 2.74
5746 9485 4.891992 CCTATTACTCAATCCGTCCCAT 57.108 45.455 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.