Multiple sequence alignment - TraesCS3D01G352000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G352000 chr3D 100.000 5614 0 0 1 5614 462865221 462859608 0.000000e+00 10368.0
1 TraesCS3D01G352000 chr3D 95.552 2518 89 12 2472 4971 463184414 463186926 0.000000e+00 4008.0
2 TraesCS3D01G352000 chr3D 97.533 1946 45 2 310 2254 463182111 463184054 0.000000e+00 3325.0
3 TraesCS3D01G352000 chr3D 92.797 236 10 3 2253 2481 463184105 463184340 9.010000e-88 335.0
4 TraesCS3D01G352000 chr3D 90.000 180 16 2 128 306 462865861 462866039 1.220000e-56 231.0
5 TraesCS3D01G352000 chr3D 95.312 64 3 0 3010 3073 463184705 463184768 9.950000e-18 102.0
6 TraesCS3D01G352000 chr3B 94.667 4500 187 22 723 5212 616258365 616262821 0.000000e+00 6931.0
7 TraesCS3D01G352000 chr3B 90.361 1359 100 11 3836 5189 615778253 615776921 0.000000e+00 1755.0
8 TraesCS3D01G352000 chr3B 90.019 531 23 7 321 822 616257835 616258364 0.000000e+00 660.0
9 TraesCS3D01G352000 chr3B 93.750 64 4 0 3010 3073 616260384 616260447 4.630000e-16 97.1
10 TraesCS3D01G352000 chr3B 95.918 49 0 2 2928 2974 616260388 616260436 1.680000e-10 78.7
11 TraesCS3D01G352000 chr3A 93.981 2808 103 25 2574 5355 606430601 606433368 0.000000e+00 4189.0
12 TraesCS3D01G352000 chr3A 93.036 2197 97 23 372 2541 606428432 606430599 0.000000e+00 3158.0
13 TraesCS3D01G352000 chr3A 90.625 64 6 0 2761 2824 606431049 606431112 1.000000e-12 86.1
14 TraesCS3D01G352000 chr3A 97.619 42 1 0 310 351 606428391 606428432 7.800000e-09 73.1
15 TraesCS3D01G352000 chr3A 89.655 58 4 2 2991 3046 606430947 606431004 7.800000e-09 73.1
16 TraesCS3D01G352000 chr7A 80.176 2159 340 61 3085 5209 30660223 30658119 0.000000e+00 1535.0
17 TraesCS3D01G352000 chr7A 78.092 283 39 12 469 747 30664387 30664124 2.090000e-34 158.0
18 TraesCS3D01G352000 chr4A 79.371 2162 360 59 3085 5209 698133315 698135427 0.000000e+00 1443.0
19 TraesCS3D01G352000 chr4A 78.799 2165 370 57 3078 5209 698906160 698908268 0.000000e+00 1373.0
20 TraesCS3D01G352000 chr4A 82.597 747 119 9 1114 1857 698903375 698904113 0.000000e+00 649.0
21 TraesCS3D01G352000 chr7D 80.089 1577 262 34 3357 4918 30270251 30268712 0.000000e+00 1125.0
22 TraesCS3D01G352000 chr2A 85.226 907 114 8 1342 2238 31015498 31016394 0.000000e+00 915.0
23 TraesCS3D01G352000 chr2A 82.027 957 149 13 4035 4981 30935098 30936041 0.000000e+00 793.0
24 TraesCS3D01G352000 chrUn 86.639 726 95 1 1186 1909 381001297 381000572 0.000000e+00 802.0
25 TraesCS3D01G352000 chrUn 86.520 727 96 1 1185 1909 17017763 17017037 0.000000e+00 798.0
26 TraesCS3D01G352000 chrUn 73.734 316 79 4 1559 1872 79689403 79689716 2.750000e-23 121.0
27 TraesCS3D01G352000 chr2B 87.421 318 23 7 1 308 534706851 534707161 3.220000e-92 350.0
28 TraesCS3D01G352000 chr1B 87.419 310 26 2 4 303 593500330 593500024 1.500000e-90 344.0
29 TraesCS3D01G352000 chr1B 84.916 179 26 1 129 306 593512442 593512620 4.470000e-41 180.0
30 TraesCS3D01G352000 chr6D 73.629 474 103 19 3252 3714 468089171 468088709 4.500000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G352000 chr3D 462859608 462865221 5613 True 10368.00 10368 100.0000 1 5614 1 chr3D.!!$R1 5613
1 TraesCS3D01G352000 chr3D 463182111 463186926 4815 False 1942.50 4008 95.2985 310 4971 4 chr3D.!!$F2 4661
2 TraesCS3D01G352000 chr3B 616257835 616262821 4986 False 1941.70 6931 93.5885 321 5212 4 chr3B.!!$F1 4891
3 TraesCS3D01G352000 chr3B 615776921 615778253 1332 True 1755.00 1755 90.3610 3836 5189 1 chr3B.!!$R1 1353
4 TraesCS3D01G352000 chr3A 606428391 606433368 4977 False 1515.86 4189 92.9832 310 5355 5 chr3A.!!$F1 5045
5 TraesCS3D01G352000 chr7A 30658119 30664387 6268 True 846.50 1535 79.1340 469 5209 2 chr7A.!!$R1 4740
6 TraesCS3D01G352000 chr4A 698133315 698135427 2112 False 1443.00 1443 79.3710 3085 5209 1 chr4A.!!$F1 2124
7 TraesCS3D01G352000 chr4A 698903375 698908268 4893 False 1011.00 1373 80.6980 1114 5209 2 chr4A.!!$F2 4095
8 TraesCS3D01G352000 chr7D 30268712 30270251 1539 True 1125.00 1125 80.0890 3357 4918 1 chr7D.!!$R1 1561
9 TraesCS3D01G352000 chr2A 31015498 31016394 896 False 915.00 915 85.2260 1342 2238 1 chr2A.!!$F2 896
10 TraesCS3D01G352000 chr2A 30935098 30936041 943 False 793.00 793 82.0270 4035 4981 1 chr2A.!!$F1 946
11 TraesCS3D01G352000 chrUn 381000572 381001297 725 True 802.00 802 86.6390 1186 1909 1 chrUn.!!$R2 723
12 TraesCS3D01G352000 chrUn 17017037 17017763 726 True 798.00 798 86.5200 1185 1909 1 chrUn.!!$R1 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.033920 TCTGTCTGCTGTGCGTTCAT 59.966 50.000 0.00 0.0 0.00 2.57 F
176 177 0.105760 TCTGGGCTTGGGCAAGAAAA 60.106 50.000 0.00 0.0 40.79 2.29 F
1638 1831 0.320374 TGTCCCGAATGGTCTGTCAC 59.680 55.000 0.00 0.0 34.77 3.67 F
2305 2564 1.272928 TGCATTCCACCTGGCCATAAA 60.273 47.619 5.51 0.0 34.44 1.40 F
3839 6014 1.268845 ACTTTTAAGCACCGCGTTTGG 60.269 47.619 4.92 0.0 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1173 1363 1.817099 CGTGGAAGCCTGGATGCTC 60.817 63.158 0.00 0.00 41.80 4.26 R
1709 1902 2.305635 TGCAATGCTGTCTCCTTAAGGA 59.694 45.455 22.94 22.94 43.08 3.36 R
3406 5578 5.063817 CGTTGCAATCTGACTGATACAATGA 59.936 40.000 0.59 0.00 38.88 2.57 R
3980 6155 2.400399 TGGCGAGTGTAGTTTTCTTCG 58.600 47.619 0.00 0.00 0.00 3.79 R
5386 7598 0.318441 TTCAGTGAAGTCCTGGAGCG 59.682 55.000 0.08 0.00 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.189188 CGGTGGAGGTACGGCGAG 62.189 72.222 16.62 0.00 0.00 5.03
20 21 3.834799 GGTGGAGGTACGGCGAGG 61.835 72.222 16.62 0.00 0.00 4.63
21 22 4.509737 GTGGAGGTACGGCGAGGC 62.510 72.222 16.62 2.35 0.00 4.70
37 38 4.388499 GCGGCGACTTGGGGAGAA 62.388 66.667 12.98 0.00 0.00 2.87
38 39 2.125512 CGGCGACTTGGGGAGAAG 60.126 66.667 0.00 0.00 0.00 2.85
39 40 2.269241 GGCGACTTGGGGAGAAGG 59.731 66.667 0.00 0.00 0.00 3.46
40 41 2.436824 GCGACTTGGGGAGAAGGC 60.437 66.667 0.00 0.00 0.00 4.35
41 42 3.068881 CGACTTGGGGAGAAGGCA 58.931 61.111 0.00 0.00 29.24 4.75
42 43 1.376037 CGACTTGGGGAGAAGGCAC 60.376 63.158 0.00 0.00 29.24 5.01
43 44 1.376037 GACTTGGGGAGAAGGCACG 60.376 63.158 0.00 0.00 30.50 5.34
44 45 2.045926 CTTGGGGAGAAGGCACGG 60.046 66.667 0.00 0.00 0.00 4.94
45 46 4.344865 TTGGGGAGAAGGCACGGC 62.345 66.667 0.00 0.00 0.00 5.68
61 62 4.347453 GCACGGGGCACTGCTTTG 62.347 66.667 0.00 0.00 43.97 2.77
62 63 2.906897 CACGGGGCACTGCTTTGT 60.907 61.111 0.00 0.00 0.00 2.83
63 64 2.123897 ACGGGGCACTGCTTTGTT 60.124 55.556 0.00 0.00 0.00 2.83
64 65 1.756561 ACGGGGCACTGCTTTGTTT 60.757 52.632 0.00 0.00 0.00 2.83
65 66 1.007387 CGGGGCACTGCTTTGTTTC 60.007 57.895 0.00 0.00 0.00 2.78
66 67 1.455383 CGGGGCACTGCTTTGTTTCT 61.455 55.000 0.00 0.00 0.00 2.52
67 68 0.315251 GGGGCACTGCTTTGTTTCTC 59.685 55.000 0.00 0.00 0.00 2.87
68 69 1.322442 GGGCACTGCTTTGTTTCTCT 58.678 50.000 0.00 0.00 0.00 3.10
69 70 1.000938 GGGCACTGCTTTGTTTCTCTG 60.001 52.381 0.00 0.00 0.00 3.35
70 71 1.678101 GGCACTGCTTTGTTTCTCTGT 59.322 47.619 0.00 0.00 0.00 3.41
71 72 2.287248 GGCACTGCTTTGTTTCTCTGTC 60.287 50.000 0.00 0.00 0.00 3.51
72 73 2.615912 GCACTGCTTTGTTTCTCTGTCT 59.384 45.455 0.00 0.00 0.00 3.41
73 74 3.547613 GCACTGCTTTGTTTCTCTGTCTG 60.548 47.826 0.00 0.00 0.00 3.51
74 75 2.615912 ACTGCTTTGTTTCTCTGTCTGC 59.384 45.455 0.00 0.00 0.00 4.26
75 76 2.877168 CTGCTTTGTTTCTCTGTCTGCT 59.123 45.455 0.00 0.00 0.00 4.24
76 77 2.615447 TGCTTTGTTTCTCTGTCTGCTG 59.385 45.455 0.00 0.00 0.00 4.41
77 78 2.615912 GCTTTGTTTCTCTGTCTGCTGT 59.384 45.455 0.00 0.00 0.00 4.40
78 79 3.547613 GCTTTGTTTCTCTGTCTGCTGTG 60.548 47.826 0.00 0.00 0.00 3.66
79 80 1.586422 TGTTTCTCTGTCTGCTGTGC 58.414 50.000 0.00 0.00 0.00 4.57
80 81 0.510359 GTTTCTCTGTCTGCTGTGCG 59.490 55.000 0.00 0.00 0.00 5.34
81 82 0.104855 TTTCTCTGTCTGCTGTGCGT 59.895 50.000 0.00 0.00 0.00 5.24
82 83 0.104855 TTCTCTGTCTGCTGTGCGTT 59.895 50.000 0.00 0.00 0.00 4.84
83 84 0.319040 TCTCTGTCTGCTGTGCGTTC 60.319 55.000 0.00 0.00 0.00 3.95
84 85 0.598419 CTCTGTCTGCTGTGCGTTCA 60.598 55.000 0.00 0.00 0.00 3.18
85 86 0.033920 TCTGTCTGCTGTGCGTTCAT 59.966 50.000 0.00 0.00 0.00 2.57
86 87 1.272212 TCTGTCTGCTGTGCGTTCATA 59.728 47.619 0.00 0.00 0.00 2.15
87 88 2.068519 CTGTCTGCTGTGCGTTCATAA 58.931 47.619 0.00 0.00 0.00 1.90
88 89 2.480037 CTGTCTGCTGTGCGTTCATAAA 59.520 45.455 0.00 0.00 0.00 1.40
89 90 3.073678 TGTCTGCTGTGCGTTCATAAAT 58.926 40.909 0.00 0.00 0.00 1.40
90 91 3.120234 TGTCTGCTGTGCGTTCATAAATG 60.120 43.478 0.00 0.00 0.00 2.32
91 92 3.125146 GTCTGCTGTGCGTTCATAAATGA 59.875 43.478 0.00 0.00 34.44 2.57
92 93 3.750652 TCTGCTGTGCGTTCATAAATGAA 59.249 39.130 1.23 1.23 43.94 2.57
93 94 4.082274 TGCTGTGCGTTCATAAATGAAG 57.918 40.909 5.64 2.63 46.44 3.02
94 95 3.119884 TGCTGTGCGTTCATAAATGAAGG 60.120 43.478 17.05 17.05 46.44 3.46
114 115 9.956720 ATGAAGGAAATATTTGATTGATCGAAC 57.043 29.630 5.17 0.00 33.27 3.95
115 116 8.122330 TGAAGGAAATATTTGATTGATCGAACG 58.878 33.333 5.17 0.00 33.27 3.95
116 117 6.959361 AGGAAATATTTGATTGATCGAACGG 58.041 36.000 5.17 0.00 33.27 4.44
117 118 6.017109 AGGAAATATTTGATTGATCGAACGGG 60.017 38.462 5.17 0.00 33.27 5.28
118 119 6.017440 GGAAATATTTGATTGATCGAACGGGA 60.017 38.462 5.17 0.00 33.27 5.14
119 120 6.935741 AATATTTGATTGATCGAACGGGAA 57.064 33.333 0.00 0.00 33.27 3.97
120 121 4.616181 ATTTGATTGATCGAACGGGAAC 57.384 40.909 0.00 0.00 33.27 3.62
150 151 3.891049 GGGCAAATCTGTCCTAGAATGT 58.109 45.455 0.00 0.00 44.65 2.71
151 152 5.036117 GGGCAAATCTGTCCTAGAATGTA 57.964 43.478 0.00 0.00 44.65 2.29
152 153 5.625150 GGGCAAATCTGTCCTAGAATGTAT 58.375 41.667 0.00 0.00 44.65 2.29
153 154 5.471456 GGGCAAATCTGTCCTAGAATGTATG 59.529 44.000 0.00 0.00 44.65 2.39
154 155 6.291377 GGCAAATCTGTCCTAGAATGTATGA 58.709 40.000 0.00 0.00 39.30 2.15
155 156 6.203723 GGCAAATCTGTCCTAGAATGTATGAC 59.796 42.308 0.00 0.00 39.30 3.06
156 157 6.074088 GCAAATCTGTCCTAGAATGTATGACG 60.074 42.308 0.00 0.00 39.30 4.35
157 158 6.716934 AATCTGTCCTAGAATGTATGACGT 57.283 37.500 0.00 0.00 39.30 4.34
158 159 5.752892 TCTGTCCTAGAATGTATGACGTC 57.247 43.478 9.11 9.11 30.84 4.34
159 160 5.437946 TCTGTCCTAGAATGTATGACGTCT 58.562 41.667 17.92 4.95 30.84 4.18
160 161 5.297029 TCTGTCCTAGAATGTATGACGTCTG 59.703 44.000 17.92 0.00 30.84 3.51
161 162 4.338400 TGTCCTAGAATGTATGACGTCTGG 59.662 45.833 17.92 0.00 0.00 3.86
162 163 3.889538 TCCTAGAATGTATGACGTCTGGG 59.110 47.826 17.92 5.19 35.91 4.45
163 164 2.604046 AGAATGTATGACGTCTGGGC 57.396 50.000 17.92 5.18 0.00 5.36
164 165 2.111384 AGAATGTATGACGTCTGGGCT 58.889 47.619 17.92 2.36 0.00 5.19
165 166 2.501723 AGAATGTATGACGTCTGGGCTT 59.498 45.455 17.92 5.11 0.00 4.35
166 167 2.315925 ATGTATGACGTCTGGGCTTG 57.684 50.000 17.92 0.00 0.00 4.01
167 168 0.249120 TGTATGACGTCTGGGCTTGG 59.751 55.000 17.92 0.00 0.00 3.61
168 169 0.462047 GTATGACGTCTGGGCTTGGG 60.462 60.000 17.92 0.00 0.00 4.12
169 170 2.252072 TATGACGTCTGGGCTTGGGC 62.252 60.000 17.92 0.00 37.82 5.36
170 171 4.329545 GACGTCTGGGCTTGGGCA 62.330 66.667 8.70 0.00 40.87 5.36
171 172 3.842925 GACGTCTGGGCTTGGGCAA 62.843 63.158 8.70 0.00 40.87 4.52
172 173 3.058160 CGTCTGGGCTTGGGCAAG 61.058 66.667 0.00 0.00 40.87 4.01
173 174 2.436109 GTCTGGGCTTGGGCAAGA 59.564 61.111 0.00 0.00 40.79 3.02
174 175 1.228552 GTCTGGGCTTGGGCAAGAA 60.229 57.895 0.00 0.00 40.79 2.52
175 176 0.827507 GTCTGGGCTTGGGCAAGAAA 60.828 55.000 0.00 0.00 40.79 2.52
176 177 0.105760 TCTGGGCTTGGGCAAGAAAA 60.106 50.000 0.00 0.00 40.79 2.29
177 178 0.758123 CTGGGCTTGGGCAAGAAAAA 59.242 50.000 0.00 0.00 40.79 1.94
178 179 0.758123 TGGGCTTGGGCAAGAAAAAG 59.242 50.000 0.00 0.00 40.79 2.27
179 180 0.758734 GGGCTTGGGCAAGAAAAAGT 59.241 50.000 0.00 0.00 40.79 2.66
180 181 1.967779 GGGCTTGGGCAAGAAAAAGTA 59.032 47.619 0.00 0.00 40.79 2.24
181 182 2.029020 GGGCTTGGGCAAGAAAAAGTAG 60.029 50.000 0.00 0.00 40.79 2.57
182 183 2.029020 GGCTTGGGCAAGAAAAAGTAGG 60.029 50.000 0.00 0.00 40.79 3.18
183 184 2.890945 GCTTGGGCAAGAAAAAGTAGGA 59.109 45.455 0.00 0.00 40.79 2.94
184 185 3.320826 GCTTGGGCAAGAAAAAGTAGGAA 59.679 43.478 0.00 0.00 40.79 3.36
185 186 4.202212 GCTTGGGCAAGAAAAAGTAGGAAA 60.202 41.667 0.00 0.00 40.79 3.13
186 187 5.683770 GCTTGGGCAAGAAAAAGTAGGAAAA 60.684 40.000 0.00 0.00 40.79 2.29
187 188 5.941555 TGGGCAAGAAAAAGTAGGAAAAA 57.058 34.783 0.00 0.00 0.00 1.94
188 189 5.666462 TGGGCAAGAAAAAGTAGGAAAAAC 58.334 37.500 0.00 0.00 0.00 2.43
189 190 5.423931 TGGGCAAGAAAAAGTAGGAAAAACT 59.576 36.000 0.00 0.00 0.00 2.66
190 191 5.983720 GGGCAAGAAAAAGTAGGAAAAACTC 59.016 40.000 0.00 0.00 0.00 3.01
191 192 6.406512 GGGCAAGAAAAAGTAGGAAAAACTCA 60.407 38.462 0.00 0.00 0.00 3.41
192 193 7.039270 GGCAAGAAAAAGTAGGAAAAACTCAA 58.961 34.615 0.00 0.00 0.00 3.02
193 194 7.710907 GGCAAGAAAAAGTAGGAAAAACTCAAT 59.289 33.333 0.00 0.00 0.00 2.57
194 195 9.744468 GCAAGAAAAAGTAGGAAAAACTCAATA 57.256 29.630 0.00 0.00 0.00 1.90
197 198 9.914131 AGAAAAAGTAGGAAAAACTCAATATGC 57.086 29.630 0.00 0.00 0.00 3.14
198 199 8.742554 AAAAAGTAGGAAAAACTCAATATGCG 57.257 30.769 0.00 0.00 0.00 4.73
199 200 6.436843 AAGTAGGAAAAACTCAATATGCGG 57.563 37.500 0.00 0.00 0.00 5.69
200 201 5.497474 AGTAGGAAAAACTCAATATGCGGT 58.503 37.500 0.00 0.00 0.00 5.68
201 202 4.701956 AGGAAAAACTCAATATGCGGTG 57.298 40.909 0.00 0.00 0.00 4.94
202 203 4.079253 AGGAAAAACTCAATATGCGGTGT 58.921 39.130 0.00 0.00 0.00 4.16
203 204 4.522789 AGGAAAAACTCAATATGCGGTGTT 59.477 37.500 0.00 0.00 0.00 3.32
204 205 5.010617 AGGAAAAACTCAATATGCGGTGTTT 59.989 36.000 0.00 0.00 0.00 2.83
205 206 5.694458 GGAAAAACTCAATATGCGGTGTTTT 59.306 36.000 0.00 0.00 38.65 2.43
206 207 6.864165 GGAAAAACTCAATATGCGGTGTTTTA 59.136 34.615 11.98 0.00 36.85 1.52
207 208 7.544217 GGAAAAACTCAATATGCGGTGTTTTAT 59.456 33.333 11.98 6.48 36.85 1.40
208 209 8.460831 AAAAACTCAATATGCGGTGTTTTATC 57.539 30.769 11.98 0.00 36.85 1.75
209 210 5.751243 ACTCAATATGCGGTGTTTTATCC 57.249 39.130 0.00 0.00 0.00 2.59
210 211 5.189928 ACTCAATATGCGGTGTTTTATCCA 58.810 37.500 0.00 0.00 0.00 3.41
211 212 5.296780 ACTCAATATGCGGTGTTTTATCCAG 59.703 40.000 0.00 0.00 0.00 3.86
212 213 4.036262 TCAATATGCGGTGTTTTATCCAGC 59.964 41.667 0.00 0.00 0.00 4.85
213 214 2.128771 ATGCGGTGTTTTATCCAGCT 57.871 45.000 0.00 0.00 0.00 4.24
214 215 2.772077 TGCGGTGTTTTATCCAGCTA 57.228 45.000 0.00 0.00 0.00 3.32
215 216 2.627945 TGCGGTGTTTTATCCAGCTAG 58.372 47.619 0.00 0.00 0.00 3.42
216 217 1.330829 GCGGTGTTTTATCCAGCTAGC 59.669 52.381 6.62 6.62 0.00 3.42
217 218 2.627945 CGGTGTTTTATCCAGCTAGCA 58.372 47.619 18.83 0.00 0.00 3.49
218 219 3.006940 CGGTGTTTTATCCAGCTAGCAA 58.993 45.455 18.83 1.82 0.00 3.91
219 220 3.627577 CGGTGTTTTATCCAGCTAGCAAT 59.372 43.478 18.83 9.81 0.00 3.56
220 221 4.496341 CGGTGTTTTATCCAGCTAGCAATG 60.496 45.833 18.83 7.28 0.00 2.82
221 222 4.640201 GGTGTTTTATCCAGCTAGCAATGA 59.360 41.667 18.83 10.33 0.00 2.57
222 223 5.125417 GGTGTTTTATCCAGCTAGCAATGAA 59.875 40.000 18.83 7.59 0.00 2.57
223 224 6.350110 GGTGTTTTATCCAGCTAGCAATGAAA 60.350 38.462 18.83 12.81 0.00 2.69
224 225 7.090173 GTGTTTTATCCAGCTAGCAATGAAAA 58.910 34.615 18.83 12.86 0.00 2.29
225 226 7.274250 GTGTTTTATCCAGCTAGCAATGAAAAG 59.726 37.037 18.83 0.00 0.00 2.27
226 227 7.039784 TGTTTTATCCAGCTAGCAATGAAAAGT 60.040 33.333 18.83 0.00 0.00 2.66
227 228 4.978083 ATCCAGCTAGCAATGAAAAGTG 57.022 40.909 18.83 2.51 0.00 3.16
228 229 3.754965 TCCAGCTAGCAATGAAAAGTGT 58.245 40.909 18.83 0.00 0.00 3.55
229 230 3.503363 TCCAGCTAGCAATGAAAAGTGTG 59.497 43.478 18.83 1.16 0.00 3.82
230 231 3.240069 CAGCTAGCAATGAAAAGTGTGC 58.760 45.455 18.83 0.00 37.26 4.57
232 233 4.154737 CAGCTAGCAATGAAAAGTGTGCTA 59.845 41.667 18.83 4.34 45.26 3.49
233 234 4.946157 AGCTAGCAATGAAAAGTGTGCTAT 59.054 37.500 18.83 0.00 45.75 2.97
234 235 5.416952 AGCTAGCAATGAAAAGTGTGCTATT 59.583 36.000 18.83 0.00 45.75 1.73
235 236 6.071728 AGCTAGCAATGAAAAGTGTGCTATTT 60.072 34.615 18.83 0.00 45.75 1.40
236 237 7.121168 AGCTAGCAATGAAAAGTGTGCTATTTA 59.879 33.333 18.83 0.00 45.75 1.40
237 238 7.430502 GCTAGCAATGAAAAGTGTGCTATTTAG 59.569 37.037 10.63 0.00 45.75 1.85
238 239 7.219484 AGCAATGAAAAGTGTGCTATTTAGT 57.781 32.000 0.00 0.00 45.26 2.24
239 240 7.308435 AGCAATGAAAAGTGTGCTATTTAGTC 58.692 34.615 0.00 0.00 45.26 2.59
240 241 7.040478 AGCAATGAAAAGTGTGCTATTTAGTCA 60.040 33.333 0.00 0.00 45.26 3.41
241 242 7.594758 GCAATGAAAAGTGTGCTATTTAGTCAA 59.405 33.333 0.00 0.00 34.13 3.18
242 243 9.462174 CAATGAAAAGTGTGCTATTTAGTCAAA 57.538 29.630 0.00 0.00 0.00 2.69
259 260 8.865590 TTAGTCAAATAAAAAGAAAGGTGTGC 57.134 30.769 0.00 0.00 0.00 4.57
260 261 7.112452 AGTCAAATAAAAAGAAAGGTGTGCT 57.888 32.000 0.00 0.00 0.00 4.40
261 262 8.232913 AGTCAAATAAAAAGAAAGGTGTGCTA 57.767 30.769 0.00 0.00 0.00 3.49
262 263 8.860088 AGTCAAATAAAAAGAAAGGTGTGCTAT 58.140 29.630 0.00 0.00 0.00 2.97
268 269 9.740710 ATAAAAAGAAAGGTGTGCTATAAGAGT 57.259 29.630 0.00 0.00 0.00 3.24
270 271 9.569122 AAAAAGAAAGGTGTGCTATAAGAGTAA 57.431 29.630 0.00 0.00 0.00 2.24
271 272 9.569122 AAAAGAAAGGTGTGCTATAAGAGTAAA 57.431 29.630 0.00 0.00 0.00 2.01
272 273 8.779354 AAGAAAGGTGTGCTATAAGAGTAAAG 57.221 34.615 0.00 0.00 0.00 1.85
273 274 7.908453 AGAAAGGTGTGCTATAAGAGTAAAGT 58.092 34.615 0.00 0.00 0.00 2.66
274 275 8.035984 AGAAAGGTGTGCTATAAGAGTAAAGTC 58.964 37.037 0.00 0.00 0.00 3.01
275 276 6.223351 AGGTGTGCTATAAGAGTAAAGTCC 57.777 41.667 0.00 0.00 0.00 3.85
276 277 5.128991 AGGTGTGCTATAAGAGTAAAGTCCC 59.871 44.000 0.00 0.00 0.00 4.46
277 278 5.105064 GGTGTGCTATAAGAGTAAAGTCCCA 60.105 44.000 0.00 0.00 0.00 4.37
278 279 6.043411 GTGTGCTATAAGAGTAAAGTCCCAG 58.957 44.000 0.00 0.00 0.00 4.45
279 280 5.955959 TGTGCTATAAGAGTAAAGTCCCAGA 59.044 40.000 0.00 0.00 0.00 3.86
280 281 6.439375 TGTGCTATAAGAGTAAAGTCCCAGAA 59.561 38.462 0.00 0.00 0.00 3.02
281 282 7.038587 TGTGCTATAAGAGTAAAGTCCCAGAAA 60.039 37.037 0.00 0.00 0.00 2.52
282 283 7.822822 GTGCTATAAGAGTAAAGTCCCAGAAAA 59.177 37.037 0.00 0.00 0.00 2.29
283 284 8.380099 TGCTATAAGAGTAAAGTCCCAGAAAAA 58.620 33.333 0.00 0.00 0.00 1.94
284 285 8.884726 GCTATAAGAGTAAAGTCCCAGAAAAAG 58.115 37.037 0.00 0.00 0.00 2.27
285 286 9.945904 CTATAAGAGTAAAGTCCCAGAAAAAGT 57.054 33.333 0.00 0.00 0.00 2.66
286 287 6.944234 AAGAGTAAAGTCCCAGAAAAAGTG 57.056 37.500 0.00 0.00 0.00 3.16
287 288 6.002653 AGAGTAAAGTCCCAGAAAAAGTGT 57.997 37.500 0.00 0.00 0.00 3.55
288 289 5.823045 AGAGTAAAGTCCCAGAAAAAGTGTG 59.177 40.000 0.00 0.00 0.00 3.82
289 290 4.887655 AGTAAAGTCCCAGAAAAAGTGTGG 59.112 41.667 0.00 0.00 40.51 4.17
290 291 1.692411 AGTCCCAGAAAAAGTGTGGC 58.308 50.000 0.00 0.00 39.44 5.01
291 292 1.064017 AGTCCCAGAAAAAGTGTGGCA 60.064 47.619 0.00 0.00 39.44 4.92
292 293 1.963515 GTCCCAGAAAAAGTGTGGCAT 59.036 47.619 0.00 0.00 39.44 4.40
293 294 2.365293 GTCCCAGAAAAAGTGTGGCATT 59.635 45.455 0.00 0.00 39.44 3.56
294 295 3.037549 TCCCAGAAAAAGTGTGGCATTT 58.962 40.909 0.00 0.00 39.44 2.32
295 296 3.069443 TCCCAGAAAAAGTGTGGCATTTC 59.931 43.478 0.00 0.00 39.44 2.17
296 297 3.392882 CCAGAAAAAGTGTGGCATTTCC 58.607 45.455 6.84 0.00 33.08 3.13
297 298 3.070015 CCAGAAAAAGTGTGGCATTTCCT 59.930 43.478 6.84 0.00 33.08 3.36
298 299 4.301628 CAGAAAAAGTGTGGCATTTCCTC 58.698 43.478 6.84 0.00 33.35 3.71
299 300 3.960102 AGAAAAAGTGTGGCATTTCCTCA 59.040 39.130 6.84 0.00 36.09 3.86
300 301 4.405358 AGAAAAAGTGTGGCATTTCCTCAA 59.595 37.500 6.84 0.00 39.78 3.02
301 302 4.751767 AAAAGTGTGGCATTTCCTCAAA 57.248 36.364 0.00 0.00 39.78 2.69
302 303 4.961438 AAAGTGTGGCATTTCCTCAAAT 57.039 36.364 0.00 0.00 39.78 2.32
303 304 4.961438 AAGTGTGGCATTTCCTCAAATT 57.039 36.364 0.00 0.00 39.78 1.82
304 305 6.418057 AAAGTGTGGCATTTCCTCAAATTA 57.582 33.333 0.00 0.00 39.78 1.40
305 306 5.391312 AGTGTGGCATTTCCTCAAATTAC 57.609 39.130 0.00 0.00 39.78 1.89
306 307 4.220602 AGTGTGGCATTTCCTCAAATTACC 59.779 41.667 0.00 0.00 39.78 2.85
307 308 3.513515 TGTGGCATTTCCTCAAATTACCC 59.486 43.478 0.00 0.00 35.56 3.69
308 309 3.103742 TGGCATTTCCTCAAATTACCCC 58.896 45.455 0.00 0.00 35.26 4.95
1173 1363 2.751436 CTGGTTGTGATGGCCCCG 60.751 66.667 0.00 0.00 0.00 5.73
1638 1831 0.320374 TGTCCCGAATGGTCTGTCAC 59.680 55.000 0.00 0.00 34.77 3.67
2054 2251 6.600388 TCAGCATGGTTTTGCCTCTTATATA 58.400 36.000 0.00 0.00 43.83 0.86
2055 2252 7.233632 TCAGCATGGTTTTGCCTCTTATATAT 58.766 34.615 0.00 0.00 43.83 0.86
2120 2325 9.550406 AAATTTCTTGAAATTCATCTGAAGCAA 57.450 25.926 18.05 3.11 37.48 3.91
2158 2365 9.056005 CAACATCTAGCATATGCCTTTTACTTA 57.944 33.333 23.96 6.48 43.38 2.24
2243 2450 3.587797 ATGCTGCTCAAAATGGTCTTG 57.412 42.857 0.00 0.00 0.00 3.02
2258 2517 8.888579 AAATGGTCTTGAAGTATTCTATACCG 57.111 34.615 0.00 0.00 45.28 4.02
2297 2556 2.768253 TCACTAGTGCATTCCACCTG 57.232 50.000 18.45 0.00 45.83 4.00
2305 2564 1.272928 TGCATTCCACCTGGCCATAAA 60.273 47.619 5.51 0.00 34.44 1.40
2485 2858 7.526142 TCTGCTAGTTGGGAAGTACTATATG 57.474 40.000 0.00 0.00 0.00 1.78
2986 4860 9.516546 TGAGTAGTGATAGTACGGATTTATGAT 57.483 33.333 0.00 0.00 0.00 2.45
3839 6014 1.268845 ACTTTTAAGCACCGCGTTTGG 60.269 47.619 4.92 0.00 0.00 3.28
3980 6155 0.985549 GCAGTCGTCGTGATCACTTC 59.014 55.000 22.95 14.13 0.00 3.01
4001 6176 2.798283 CGAAGAAAACTACACTCGCCAA 59.202 45.455 0.00 0.00 0.00 4.52
4467 6642 2.296190 GACCTTTGGTTAAAGTGGGCTG 59.704 50.000 0.00 0.00 41.36 4.85
4572 6747 6.669125 TGATGGAATTTTGGCCCATAATAG 57.331 37.500 0.00 0.00 40.50 1.73
4759 6950 6.752351 TCAGTCTATTTTTCTCTTCGGAATCG 59.248 38.462 0.00 0.00 37.82 3.34
4772 6964 6.961576 TCTTCGGAATCGTTTTGTATGTTTT 58.038 32.000 0.00 0.00 37.69 2.43
4773 6965 6.853872 TCTTCGGAATCGTTTTGTATGTTTTG 59.146 34.615 0.00 0.00 37.69 2.44
4777 6969 7.958567 TCGGAATCGTTTTGTATGTTTTGATAC 59.041 33.333 0.00 0.00 37.69 2.24
4910 7105 7.389803 TCCATGTATCACTTGTATTTTGGTG 57.610 36.000 0.00 0.00 0.00 4.17
4931 7126 8.754991 TGGTGTGTAAAATGGTTAATATAGGG 57.245 34.615 0.00 0.00 0.00 3.53
4951 7146 1.711824 GTAACAAATCCACGCGCAAAC 59.288 47.619 5.73 0.00 0.00 2.93
5024 7221 5.418840 CCTTGATACTTGCCTTTGGTGTTAT 59.581 40.000 0.00 0.00 0.00 1.89
5032 7229 5.235850 TGCCTTTGGTGTTATTACTCTGA 57.764 39.130 0.00 0.00 0.00 3.27
5057 7268 8.986477 ATTTGCTACCTTAATGATTTGTTGTC 57.014 30.769 0.00 0.00 0.00 3.18
5101 7312 6.118170 CCCTCACATATGAAGTTTCATCAGT 58.882 40.000 10.38 8.08 44.17 3.41
5214 7426 5.482006 ACAATAAGAAAGGAGGCAATTTGC 58.518 37.500 13.04 13.04 44.08 3.68
5225 7437 1.868469 GCAATTTGCAAGCTTGGTGA 58.132 45.000 27.10 0.00 44.26 4.02
5226 7438 2.211806 GCAATTTGCAAGCTTGGTGAA 58.788 42.857 27.10 8.13 44.26 3.18
5249 7461 9.337396 TGAATAGTGGGTAATTAACATGCTTAG 57.663 33.333 2.32 0.00 0.00 2.18
5260 7472 4.623932 AACATGCTTAGGTTGAGTCAGA 57.376 40.909 0.00 0.00 0.00 3.27
5268 7480 6.156949 TGCTTAGGTTGAGTCAGAATAGGATT 59.843 38.462 0.00 0.00 0.00 3.01
5269 7481 6.481644 GCTTAGGTTGAGTCAGAATAGGATTG 59.518 42.308 0.00 0.00 0.00 2.67
5361 7573 7.554959 ACTACCCTCTTAAAAAGTGAGATCA 57.445 36.000 0.00 0.00 0.00 2.92
5362 7574 7.616313 ACTACCCTCTTAAAAAGTGAGATCAG 58.384 38.462 0.00 0.00 0.00 2.90
5363 7575 6.688073 ACCCTCTTAAAAAGTGAGATCAGA 57.312 37.500 0.00 0.00 0.00 3.27
5364 7576 6.706295 ACCCTCTTAAAAAGTGAGATCAGAG 58.294 40.000 0.00 0.00 0.00 3.35
5365 7577 6.112058 CCCTCTTAAAAAGTGAGATCAGAGG 58.888 44.000 10.14 10.14 38.98 3.69
5366 7578 6.112058 CCTCTTAAAAAGTGAGATCAGAGGG 58.888 44.000 9.50 0.00 36.50 4.30
5367 7579 6.296145 CCTCTTAAAAAGTGAGATCAGAGGGT 60.296 42.308 9.50 0.00 36.50 4.34
5368 7580 7.093289 CCTCTTAAAAAGTGAGATCAGAGGGTA 60.093 40.741 9.50 0.00 36.50 3.69
5369 7581 8.202461 TCTTAAAAAGTGAGATCAGAGGGTAA 57.798 34.615 0.00 0.00 0.00 2.85
5370 7582 8.656806 TCTTAAAAAGTGAGATCAGAGGGTAAA 58.343 33.333 0.00 0.00 0.00 2.01
5371 7583 8.617290 TTAAAAAGTGAGATCAGAGGGTAAAC 57.383 34.615 0.00 0.00 0.00 2.01
5372 7584 5.825593 AAAGTGAGATCAGAGGGTAAACA 57.174 39.130 0.00 0.00 0.00 2.83
5373 7585 5.825593 AAGTGAGATCAGAGGGTAAACAA 57.174 39.130 0.00 0.00 0.00 2.83
5374 7586 5.825593 AGTGAGATCAGAGGGTAAACAAA 57.174 39.130 0.00 0.00 0.00 2.83
5375 7587 5.799213 AGTGAGATCAGAGGGTAAACAAAG 58.201 41.667 0.00 0.00 0.00 2.77
5376 7588 5.308237 AGTGAGATCAGAGGGTAAACAAAGT 59.692 40.000 0.00 0.00 0.00 2.66
5377 7589 5.409826 GTGAGATCAGAGGGTAAACAAAGTG 59.590 44.000 0.00 0.00 0.00 3.16
5378 7590 5.306937 TGAGATCAGAGGGTAAACAAAGTGA 59.693 40.000 0.00 0.00 0.00 3.41
5379 7591 6.183361 TGAGATCAGAGGGTAAACAAAGTGAA 60.183 38.462 0.00 0.00 0.00 3.18
5380 7592 6.234177 AGATCAGAGGGTAAACAAAGTGAAG 58.766 40.000 0.00 0.00 0.00 3.02
5381 7593 4.714632 TCAGAGGGTAAACAAAGTGAAGG 58.285 43.478 0.00 0.00 0.00 3.46
5382 7594 4.410883 TCAGAGGGTAAACAAAGTGAAGGA 59.589 41.667 0.00 0.00 0.00 3.36
5383 7595 4.757149 CAGAGGGTAAACAAAGTGAAGGAG 59.243 45.833 0.00 0.00 0.00 3.69
5384 7596 4.658901 AGAGGGTAAACAAAGTGAAGGAGA 59.341 41.667 0.00 0.00 0.00 3.71
5385 7597 4.974399 AGGGTAAACAAAGTGAAGGAGAG 58.026 43.478 0.00 0.00 0.00 3.20
5386 7598 3.502595 GGGTAAACAAAGTGAAGGAGAGC 59.497 47.826 0.00 0.00 0.00 4.09
5387 7599 3.186613 GGTAAACAAAGTGAAGGAGAGCG 59.813 47.826 0.00 0.00 0.00 5.03
5388 7600 1.230324 AACAAAGTGAAGGAGAGCGC 58.770 50.000 0.00 0.00 0.00 5.92
5389 7601 0.394565 ACAAAGTGAAGGAGAGCGCT 59.605 50.000 11.27 11.27 0.00 5.92
5390 7602 1.074752 CAAAGTGAAGGAGAGCGCTC 58.925 55.000 30.01 30.01 40.54 5.03
5398 7610 3.293702 GAGAGCGCTCCAGGACTT 58.706 61.111 32.94 13.56 35.01 3.01
5399 7611 1.140804 GAGAGCGCTCCAGGACTTC 59.859 63.158 32.94 18.37 35.01 3.01
5400 7612 1.599606 GAGAGCGCTCCAGGACTTCA 61.600 60.000 32.94 0.00 35.01 3.02
5401 7613 1.446966 GAGCGCTCCAGGACTTCAC 60.447 63.158 27.22 0.00 0.00 3.18
5402 7614 1.882989 GAGCGCTCCAGGACTTCACT 61.883 60.000 27.22 0.00 0.00 3.41
5403 7615 1.739562 GCGCTCCAGGACTTCACTG 60.740 63.158 0.00 0.00 35.74 3.66
5404 7616 1.967535 CGCTCCAGGACTTCACTGA 59.032 57.895 0.00 0.00 38.20 3.41
5405 7617 0.318441 CGCTCCAGGACTTCACTGAA 59.682 55.000 0.00 0.00 38.20 3.02
5406 7618 1.066573 CGCTCCAGGACTTCACTGAAT 60.067 52.381 0.00 0.00 38.20 2.57
5407 7619 2.613977 CGCTCCAGGACTTCACTGAATT 60.614 50.000 0.00 0.00 38.20 2.17
5408 7620 3.416156 GCTCCAGGACTTCACTGAATTT 58.584 45.455 0.00 0.00 38.20 1.82
5409 7621 4.579869 GCTCCAGGACTTCACTGAATTTA 58.420 43.478 0.00 0.00 38.20 1.40
5410 7622 5.189180 GCTCCAGGACTTCACTGAATTTAT 58.811 41.667 0.00 0.00 38.20 1.40
5411 7623 6.349300 GCTCCAGGACTTCACTGAATTTATA 58.651 40.000 0.00 0.00 38.20 0.98
5412 7624 6.481644 GCTCCAGGACTTCACTGAATTTATAG 59.518 42.308 0.00 0.00 38.20 1.31
5413 7625 6.349300 TCCAGGACTTCACTGAATTTATAGC 58.651 40.000 0.00 0.00 38.20 2.97
5414 7626 6.070251 TCCAGGACTTCACTGAATTTATAGCA 60.070 38.462 0.00 0.00 38.20 3.49
5415 7627 6.037610 CCAGGACTTCACTGAATTTATAGCAC 59.962 42.308 0.00 0.00 38.20 4.40
5416 7628 6.820656 CAGGACTTCACTGAATTTATAGCACT 59.179 38.462 0.00 0.00 38.20 4.40
5417 7629 7.010923 CAGGACTTCACTGAATTTATAGCACTC 59.989 40.741 0.00 0.00 38.20 3.51
5418 7630 6.258947 GGACTTCACTGAATTTATAGCACTCC 59.741 42.308 0.00 0.00 0.00 3.85
5419 7631 6.951971 ACTTCACTGAATTTATAGCACTCCT 58.048 36.000 0.00 0.00 0.00 3.69
5420 7632 7.398024 ACTTCACTGAATTTATAGCACTCCTT 58.602 34.615 0.00 0.00 0.00 3.36
5421 7633 7.335422 ACTTCACTGAATTTATAGCACTCCTTG 59.665 37.037 0.00 0.00 0.00 3.61
5422 7634 6.711277 TCACTGAATTTATAGCACTCCTTGT 58.289 36.000 0.00 0.00 0.00 3.16
5424 7636 5.882557 ACTGAATTTATAGCACTCCTTGTGG 59.117 40.000 0.00 0.00 46.27 4.17
5425 7637 5.192927 TGAATTTATAGCACTCCTTGTGGG 58.807 41.667 0.00 0.00 46.27 4.61
5426 7638 5.045213 TGAATTTATAGCACTCCTTGTGGGA 60.045 40.000 0.00 0.00 46.27 4.37
5427 7639 4.919774 TTTATAGCACTCCTTGTGGGAA 57.080 40.909 0.00 0.00 46.27 3.97
5428 7640 4.919774 TTATAGCACTCCTTGTGGGAAA 57.080 40.909 0.00 0.00 46.27 3.13
5429 7641 5.450818 TTATAGCACTCCTTGTGGGAAAT 57.549 39.130 0.00 0.00 46.27 2.17
5430 7642 2.683211 AGCACTCCTTGTGGGAAATT 57.317 45.000 0.00 0.00 46.27 1.82
5431 7643 2.242043 AGCACTCCTTGTGGGAAATTG 58.758 47.619 0.00 0.00 46.27 2.32
5432 7644 1.963515 GCACTCCTTGTGGGAAATTGT 59.036 47.619 0.00 0.00 46.27 2.71
5433 7645 3.153919 GCACTCCTTGTGGGAAATTGTA 58.846 45.455 0.00 0.00 46.27 2.41
5434 7646 3.763897 GCACTCCTTGTGGGAAATTGTAT 59.236 43.478 0.00 0.00 46.27 2.29
5435 7647 4.380867 GCACTCCTTGTGGGAAATTGTATG 60.381 45.833 0.00 0.00 46.27 2.39
5436 7648 4.766891 CACTCCTTGTGGGAAATTGTATGT 59.233 41.667 0.00 0.00 44.58 2.29
5437 7649 4.766891 ACTCCTTGTGGGAAATTGTATGTG 59.233 41.667 0.00 0.00 44.58 3.21
5438 7650 3.509575 TCCTTGTGGGAAATTGTATGTGC 59.490 43.478 0.00 0.00 41.91 4.57
5439 7651 3.500982 CTTGTGGGAAATTGTATGTGCG 58.499 45.455 0.00 0.00 0.00 5.34
5440 7652 2.509569 TGTGGGAAATTGTATGTGCGT 58.490 42.857 0.00 0.00 0.00 5.24
5441 7653 3.676093 TGTGGGAAATTGTATGTGCGTA 58.324 40.909 0.00 0.00 0.00 4.42
5442 7654 4.072839 TGTGGGAAATTGTATGTGCGTAA 58.927 39.130 0.00 0.00 0.00 3.18
5443 7655 4.083217 TGTGGGAAATTGTATGTGCGTAAC 60.083 41.667 0.00 0.00 0.00 2.50
5444 7656 4.155280 GTGGGAAATTGTATGTGCGTAACT 59.845 41.667 0.00 0.00 0.00 2.24
5445 7657 4.393680 TGGGAAATTGTATGTGCGTAACTC 59.606 41.667 0.00 0.00 0.00 3.01
5446 7658 4.634443 GGGAAATTGTATGTGCGTAACTCT 59.366 41.667 0.00 0.00 0.00 3.24
5447 7659 5.220605 GGGAAATTGTATGTGCGTAACTCTC 60.221 44.000 0.00 0.00 0.00 3.20
5448 7660 5.450376 AAATTGTATGTGCGTAACTCTCG 57.550 39.130 0.00 0.00 0.00 4.04
5449 7661 3.564235 TTGTATGTGCGTAACTCTCGT 57.436 42.857 0.00 0.00 0.00 4.18
5450 7662 2.858839 TGTATGTGCGTAACTCTCGTG 58.141 47.619 0.00 0.00 0.00 4.35
5451 7663 2.227149 TGTATGTGCGTAACTCTCGTGT 59.773 45.455 0.00 0.00 0.00 4.49
5452 7664 2.433868 ATGTGCGTAACTCTCGTGTT 57.566 45.000 0.00 0.00 0.00 3.32
5453 7665 2.212869 TGTGCGTAACTCTCGTGTTT 57.787 45.000 0.00 0.00 0.00 2.83
5454 7666 3.352554 TGTGCGTAACTCTCGTGTTTA 57.647 42.857 0.00 0.00 0.00 2.01
5455 7667 3.904571 TGTGCGTAACTCTCGTGTTTAT 58.095 40.909 0.00 0.00 0.00 1.40
5456 7668 3.671459 TGTGCGTAACTCTCGTGTTTATG 59.329 43.478 0.00 0.00 0.00 1.90
5457 7669 3.671928 GTGCGTAACTCTCGTGTTTATGT 59.328 43.478 0.00 0.00 0.00 2.29
5458 7670 4.149396 GTGCGTAACTCTCGTGTTTATGTT 59.851 41.667 0.00 0.00 0.00 2.71
5459 7671 4.746115 TGCGTAACTCTCGTGTTTATGTTT 59.254 37.500 0.00 0.00 0.00 2.83
5460 7672 5.070862 GCGTAACTCTCGTGTTTATGTTTG 58.929 41.667 0.00 0.00 0.00 2.93
5461 7673 5.107760 GCGTAACTCTCGTGTTTATGTTTGA 60.108 40.000 0.00 0.00 0.00 2.69
5462 7674 6.400727 GCGTAACTCTCGTGTTTATGTTTGAT 60.401 38.462 0.00 0.00 0.00 2.57
5463 7675 7.201376 GCGTAACTCTCGTGTTTATGTTTGATA 60.201 37.037 0.00 0.00 0.00 2.15
5464 7676 8.311822 CGTAACTCTCGTGTTTATGTTTGATAG 58.688 37.037 0.00 0.00 0.00 2.08
5465 7677 9.136952 GTAACTCTCGTGTTTATGTTTGATAGT 57.863 33.333 0.00 0.00 0.00 2.12
5466 7678 7.582435 ACTCTCGTGTTTATGTTTGATAGTG 57.418 36.000 0.00 0.00 0.00 2.74
5467 7679 6.590292 ACTCTCGTGTTTATGTTTGATAGTGG 59.410 38.462 0.00 0.00 0.00 4.00
5468 7680 6.693466 TCTCGTGTTTATGTTTGATAGTGGA 58.307 36.000 0.00 0.00 0.00 4.02
5469 7681 7.327975 TCTCGTGTTTATGTTTGATAGTGGAT 58.672 34.615 0.00 0.00 0.00 3.41
5470 7682 7.277760 TCTCGTGTTTATGTTTGATAGTGGATG 59.722 37.037 0.00 0.00 0.00 3.51
5471 7683 6.876789 TCGTGTTTATGTTTGATAGTGGATGT 59.123 34.615 0.00 0.00 0.00 3.06
5472 7684 8.035984 TCGTGTTTATGTTTGATAGTGGATGTA 58.964 33.333 0.00 0.00 0.00 2.29
5473 7685 8.114290 CGTGTTTATGTTTGATAGTGGATGTAC 58.886 37.037 0.00 0.00 0.00 2.90
5474 7686 8.395633 GTGTTTATGTTTGATAGTGGATGTACC 58.604 37.037 0.00 0.00 39.54 3.34
5485 7697 3.992943 TGGATGTACCAGGGTTAGTTG 57.007 47.619 0.00 0.00 44.64 3.16
5486 7698 2.026636 TGGATGTACCAGGGTTAGTTGC 60.027 50.000 0.00 0.00 44.64 4.17
5487 7699 2.238898 GGATGTACCAGGGTTAGTTGCT 59.761 50.000 0.00 0.00 38.79 3.91
5488 7700 3.308188 GGATGTACCAGGGTTAGTTGCTT 60.308 47.826 0.00 0.00 38.79 3.91
5489 7701 3.412237 TGTACCAGGGTTAGTTGCTTC 57.588 47.619 0.00 0.00 0.00 3.86
5490 7702 2.706723 TGTACCAGGGTTAGTTGCTTCA 59.293 45.455 0.00 0.00 0.00 3.02
5491 7703 3.136809 TGTACCAGGGTTAGTTGCTTCAA 59.863 43.478 0.00 0.00 0.00 2.69
5492 7704 2.583143 ACCAGGGTTAGTTGCTTCAAC 58.417 47.619 1.71 1.71 43.83 3.18
5503 7715 4.522297 GTTGCTTCAACTCATCGGTATC 57.478 45.455 2.71 0.00 40.73 2.24
5504 7716 4.184629 GTTGCTTCAACTCATCGGTATCT 58.815 43.478 2.71 0.00 40.73 1.98
5505 7717 3.785486 TGCTTCAACTCATCGGTATCTG 58.215 45.455 0.00 0.00 0.00 2.90
5506 7718 3.447229 TGCTTCAACTCATCGGTATCTGA 59.553 43.478 0.00 0.00 0.00 3.27
5507 7719 3.799420 GCTTCAACTCATCGGTATCTGAC 59.201 47.826 0.00 0.00 0.00 3.51
5508 7720 4.678044 GCTTCAACTCATCGGTATCTGACA 60.678 45.833 0.00 0.00 0.00 3.58
5509 7721 5.400066 TTCAACTCATCGGTATCTGACAA 57.600 39.130 0.00 0.00 0.00 3.18
5510 7722 4.998788 TCAACTCATCGGTATCTGACAAG 58.001 43.478 0.00 0.00 0.00 3.16
5511 7723 4.462834 TCAACTCATCGGTATCTGACAAGT 59.537 41.667 0.00 0.00 0.00 3.16
5512 7724 4.377839 ACTCATCGGTATCTGACAAGTG 57.622 45.455 0.00 0.00 0.00 3.16
5513 7725 4.017126 ACTCATCGGTATCTGACAAGTGA 58.983 43.478 0.00 0.00 0.00 3.41
5514 7726 4.462834 ACTCATCGGTATCTGACAAGTGAA 59.537 41.667 0.00 0.00 0.00 3.18
5515 7727 5.127845 ACTCATCGGTATCTGACAAGTGAAT 59.872 40.000 0.00 0.00 0.00 2.57
5516 7728 6.321435 ACTCATCGGTATCTGACAAGTGAATA 59.679 38.462 0.00 0.00 0.00 1.75
5517 7729 7.014711 ACTCATCGGTATCTGACAAGTGAATAT 59.985 37.037 0.00 0.00 0.00 1.28
5518 7730 7.147976 TCATCGGTATCTGACAAGTGAATATG 58.852 38.462 0.00 0.00 0.00 1.78
5519 7731 6.709018 TCGGTATCTGACAAGTGAATATGA 57.291 37.500 0.00 0.00 0.00 2.15
5520 7732 7.107639 TCGGTATCTGACAAGTGAATATGAA 57.892 36.000 0.00 0.00 0.00 2.57
5521 7733 7.552459 TCGGTATCTGACAAGTGAATATGAAA 58.448 34.615 0.00 0.00 0.00 2.69
5522 7734 7.491372 TCGGTATCTGACAAGTGAATATGAAAC 59.509 37.037 0.00 0.00 0.00 2.78
5523 7735 7.492669 CGGTATCTGACAAGTGAATATGAAACT 59.507 37.037 0.00 0.00 0.00 2.66
5524 7736 9.167311 GGTATCTGACAAGTGAATATGAAACTT 57.833 33.333 0.00 0.00 34.52 2.66
5526 7738 8.853077 ATCTGACAAGTGAATATGAAACTTCA 57.147 30.769 0.00 0.00 42.14 3.02
5536 7748 8.774586 GTGAATATGAAACTTCACTGTGTTAGT 58.225 33.333 7.79 9.65 44.94 2.24
5537 7749 9.990360 TGAATATGAAACTTCACTGTGTTAGTA 57.010 29.630 15.06 4.78 40.49 1.82
5542 7754 8.725405 TGAAACTTCACTGTGTTAGTATTTCA 57.275 30.769 18.08 18.08 37.60 2.69
5543 7755 9.337396 TGAAACTTCACTGTGTTAGTATTTCAT 57.663 29.630 18.08 5.17 37.60 2.57
5547 7759 9.998106 ACTTCACTGTGTTAGTATTTCATTAGT 57.002 29.630 7.79 0.00 37.60 2.24
5550 7762 9.772973 TCACTGTGTTAGTATTTCATTAGTTGT 57.227 29.630 7.79 0.00 37.60 3.32
5552 7764 9.216117 ACTGTGTTAGTATTTCATTAGTTGTCC 57.784 33.333 0.00 0.00 38.04 4.02
5553 7765 8.556213 TGTGTTAGTATTTCATTAGTTGTCCC 57.444 34.615 0.00 0.00 0.00 4.46
5554 7766 8.158132 TGTGTTAGTATTTCATTAGTTGTCCCA 58.842 33.333 0.00 0.00 0.00 4.37
5555 7767 9.174166 GTGTTAGTATTTCATTAGTTGTCCCAT 57.826 33.333 0.00 0.00 0.00 4.00
5556 7768 9.747898 TGTTAGTATTTCATTAGTTGTCCCATT 57.252 29.630 0.00 0.00 0.00 3.16
5563 7775 8.934023 TTTCATTAGTTGTCCCATTTAGAGTT 57.066 30.769 0.00 0.00 0.00 3.01
5564 7776 8.934023 TTCATTAGTTGTCCCATTTAGAGTTT 57.066 30.769 0.00 0.00 0.00 2.66
5565 7777 8.934023 TCATTAGTTGTCCCATTTAGAGTTTT 57.066 30.769 0.00 0.00 0.00 2.43
5566 7778 9.010029 TCATTAGTTGTCCCATTTAGAGTTTTC 57.990 33.333 0.00 0.00 0.00 2.29
5567 7779 9.014297 CATTAGTTGTCCCATTTAGAGTTTTCT 57.986 33.333 0.00 0.00 37.46 2.52
5568 7780 8.617290 TTAGTTGTCCCATTTAGAGTTTTCTC 57.383 34.615 0.00 0.00 46.50 2.87
5585 7797 9.708092 GAGTTTTCTCCTATTAAGTAACTGTGT 57.292 33.333 0.00 0.00 40.79 3.72
5586 7798 9.490379 AGTTTTCTCCTATTAAGTAACTGTGTG 57.510 33.333 0.00 0.00 0.00 3.82
5587 7799 9.269453 GTTTTCTCCTATTAAGTAACTGTGTGT 57.731 33.333 0.00 0.00 0.00 3.72
5588 7800 8.827177 TTTCTCCTATTAAGTAACTGTGTGTG 57.173 34.615 0.00 0.00 0.00 3.82
5589 7801 7.770366 TCTCCTATTAAGTAACTGTGTGTGA 57.230 36.000 0.00 0.00 0.00 3.58
5590 7802 8.362464 TCTCCTATTAAGTAACTGTGTGTGAT 57.638 34.615 0.00 0.00 0.00 3.06
5591 7803 9.470399 TCTCCTATTAAGTAACTGTGTGTGATA 57.530 33.333 0.00 0.00 0.00 2.15
5592 7804 9.517609 CTCCTATTAAGTAACTGTGTGTGATAC 57.482 37.037 0.00 0.00 0.00 2.24
5593 7805 8.472413 TCCTATTAAGTAACTGTGTGTGATACC 58.528 37.037 0.00 0.00 0.00 2.73
5594 7806 8.255206 CCTATTAAGTAACTGTGTGTGATACCA 58.745 37.037 0.00 0.00 0.00 3.25
5595 7807 9.817809 CTATTAAGTAACTGTGTGTGATACCAT 57.182 33.333 0.00 0.00 0.00 3.55
5596 7808 7.899178 TTAAGTAACTGTGTGTGATACCATG 57.101 36.000 0.00 0.00 0.00 3.66
5597 7809 5.483685 AGTAACTGTGTGTGATACCATGT 57.516 39.130 0.00 0.00 0.00 3.21
5598 7810 5.865085 AGTAACTGTGTGTGATACCATGTT 58.135 37.500 0.00 0.00 0.00 2.71
5599 7811 6.296026 AGTAACTGTGTGTGATACCATGTTT 58.704 36.000 0.00 0.00 0.00 2.83
5600 7812 6.770785 AGTAACTGTGTGTGATACCATGTTTT 59.229 34.615 0.00 0.00 0.00 2.43
5601 7813 6.463995 AACTGTGTGTGATACCATGTTTTT 57.536 33.333 0.00 0.00 0.00 1.94
5602 7814 6.072112 ACTGTGTGTGATACCATGTTTTTC 57.928 37.500 0.00 0.00 0.00 2.29
5603 7815 5.827797 ACTGTGTGTGATACCATGTTTTTCT 59.172 36.000 0.00 0.00 0.00 2.52
5604 7816 6.995686 ACTGTGTGTGATACCATGTTTTTCTA 59.004 34.615 0.00 0.00 0.00 2.10
5605 7817 7.173218 ACTGTGTGTGATACCATGTTTTTCTAG 59.827 37.037 0.00 0.00 0.00 2.43
5606 7818 7.220740 TGTGTGTGATACCATGTTTTTCTAGA 58.779 34.615 0.00 0.00 0.00 2.43
5607 7819 7.717436 TGTGTGTGATACCATGTTTTTCTAGAA 59.283 33.333 0.00 0.00 0.00 2.10
5608 7820 8.730680 GTGTGTGATACCATGTTTTTCTAGAAT 58.269 33.333 5.89 0.00 0.00 2.40
5609 7821 9.952030 TGTGTGATACCATGTTTTTCTAGAATA 57.048 29.630 5.89 0.00 0.00 1.75
5611 7823 9.391006 TGTGATACCATGTTTTTCTAGAATACC 57.609 33.333 5.89 0.00 0.00 2.73
5612 7824 9.391006 GTGATACCATGTTTTTCTAGAATACCA 57.609 33.333 5.89 0.45 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.189188 CTCGCCGTACCTCCACCG 62.189 72.222 0.00 0.00 0.00 4.94
3 4 3.834799 CCTCGCCGTACCTCCACC 61.835 72.222 0.00 0.00 0.00 4.61
4 5 4.509737 GCCTCGCCGTACCTCCAC 62.510 72.222 0.00 0.00 0.00 4.02
20 21 4.388499 TTCTCCCCAAGTCGCCGC 62.388 66.667 0.00 0.00 0.00 6.53
21 22 2.125512 CTTCTCCCCAAGTCGCCG 60.126 66.667 0.00 0.00 0.00 6.46
22 23 2.269241 CCTTCTCCCCAAGTCGCC 59.731 66.667 0.00 0.00 0.00 5.54
23 24 2.436824 GCCTTCTCCCCAAGTCGC 60.437 66.667 0.00 0.00 0.00 5.19
24 25 1.376037 GTGCCTTCTCCCCAAGTCG 60.376 63.158 0.00 0.00 0.00 4.18
25 26 1.376037 CGTGCCTTCTCCCCAAGTC 60.376 63.158 0.00 0.00 0.00 3.01
26 27 2.750350 CGTGCCTTCTCCCCAAGT 59.250 61.111 0.00 0.00 0.00 3.16
27 28 2.045926 CCGTGCCTTCTCCCCAAG 60.046 66.667 0.00 0.00 0.00 3.61
28 29 4.344865 GCCGTGCCTTCTCCCCAA 62.345 66.667 0.00 0.00 0.00 4.12
44 45 4.347453 CAAAGCAGTGCCCCGTGC 62.347 66.667 12.58 0.00 40.17 5.34
45 46 2.015227 AAACAAAGCAGTGCCCCGTG 62.015 55.000 12.58 7.42 0.00 4.94
46 47 1.734388 GAAACAAAGCAGTGCCCCGT 61.734 55.000 12.58 3.03 0.00 5.28
47 48 1.007387 GAAACAAAGCAGTGCCCCG 60.007 57.895 12.58 2.31 0.00 5.73
48 49 0.315251 GAGAAACAAAGCAGTGCCCC 59.685 55.000 12.58 0.00 0.00 5.80
49 50 1.000938 CAGAGAAACAAAGCAGTGCCC 60.001 52.381 12.58 0.00 0.00 5.36
50 51 1.678101 ACAGAGAAACAAAGCAGTGCC 59.322 47.619 12.58 0.00 0.00 5.01
51 52 2.615912 AGACAGAGAAACAAAGCAGTGC 59.384 45.455 7.13 7.13 0.00 4.40
52 53 3.547613 GCAGACAGAGAAACAAAGCAGTG 60.548 47.826 0.00 0.00 0.00 3.66
53 54 2.615912 GCAGACAGAGAAACAAAGCAGT 59.384 45.455 0.00 0.00 0.00 4.40
54 55 2.877168 AGCAGACAGAGAAACAAAGCAG 59.123 45.455 0.00 0.00 0.00 4.24
55 56 2.615447 CAGCAGACAGAGAAACAAAGCA 59.385 45.455 0.00 0.00 0.00 3.91
56 57 2.615912 ACAGCAGACAGAGAAACAAAGC 59.384 45.455 0.00 0.00 0.00 3.51
57 58 3.547613 GCACAGCAGACAGAGAAACAAAG 60.548 47.826 0.00 0.00 0.00 2.77
58 59 2.355756 GCACAGCAGACAGAGAAACAAA 59.644 45.455 0.00 0.00 0.00 2.83
59 60 1.942657 GCACAGCAGACAGAGAAACAA 59.057 47.619 0.00 0.00 0.00 2.83
60 61 1.586422 GCACAGCAGACAGAGAAACA 58.414 50.000 0.00 0.00 0.00 2.83
61 62 0.510359 CGCACAGCAGACAGAGAAAC 59.490 55.000 0.00 0.00 0.00 2.78
62 63 0.104855 ACGCACAGCAGACAGAGAAA 59.895 50.000 0.00 0.00 0.00 2.52
63 64 0.104855 AACGCACAGCAGACAGAGAA 59.895 50.000 0.00 0.00 0.00 2.87
64 65 0.319040 GAACGCACAGCAGACAGAGA 60.319 55.000 0.00 0.00 0.00 3.10
65 66 0.598419 TGAACGCACAGCAGACAGAG 60.598 55.000 0.00 0.00 0.00 3.35
66 67 0.033920 ATGAACGCACAGCAGACAGA 59.966 50.000 0.00 0.00 0.00 3.41
67 68 1.713597 TATGAACGCACAGCAGACAG 58.286 50.000 0.00 0.00 0.00 3.51
68 69 2.162319 TTATGAACGCACAGCAGACA 57.838 45.000 0.00 0.00 0.00 3.41
69 70 3.125146 TCATTTATGAACGCACAGCAGAC 59.875 43.478 0.00 0.00 33.08 3.51
70 71 3.333804 TCATTTATGAACGCACAGCAGA 58.666 40.909 0.00 0.00 33.08 4.26
71 72 3.745332 TCATTTATGAACGCACAGCAG 57.255 42.857 0.00 0.00 33.08 4.24
72 73 3.119884 CCTTCATTTATGAACGCACAGCA 60.120 43.478 1.12 0.00 41.51 4.41
73 74 3.126858 TCCTTCATTTATGAACGCACAGC 59.873 43.478 1.12 0.00 41.51 4.40
74 75 4.944962 TCCTTCATTTATGAACGCACAG 57.055 40.909 1.12 0.00 41.51 3.66
75 76 5.697473 TTTCCTTCATTTATGAACGCACA 57.303 34.783 1.12 0.00 41.51 4.57
76 77 8.856490 AATATTTCCTTCATTTATGAACGCAC 57.144 30.769 1.12 0.00 41.51 5.34
77 78 9.299963 CAAATATTTCCTTCATTTATGAACGCA 57.700 29.630 0.00 0.00 41.51 5.24
78 79 9.515020 TCAAATATTTCCTTCATTTATGAACGC 57.485 29.630 0.00 0.00 41.51 4.84
88 89 9.956720 GTTCGATCAATCAAATATTTCCTTCAT 57.043 29.630 0.00 0.00 0.00 2.57
89 90 8.122330 CGTTCGATCAATCAAATATTTCCTTCA 58.878 33.333 0.00 0.00 0.00 3.02
90 91 7.587757 CCGTTCGATCAATCAAATATTTCCTTC 59.412 37.037 0.00 0.00 0.00 3.46
91 92 7.417612 CCGTTCGATCAATCAAATATTTCCTT 58.582 34.615 0.00 0.00 0.00 3.36
92 93 6.017109 CCCGTTCGATCAATCAAATATTTCCT 60.017 38.462 0.00 0.00 0.00 3.36
93 94 6.017440 TCCCGTTCGATCAATCAAATATTTCC 60.017 38.462 0.00 0.00 0.00 3.13
94 95 6.954944 TCCCGTTCGATCAATCAAATATTTC 58.045 36.000 0.00 0.00 0.00 2.17
95 96 6.935741 TCCCGTTCGATCAATCAAATATTT 57.064 33.333 0.00 0.00 0.00 1.40
96 97 6.511121 CGTTCCCGTTCGATCAATCAAATATT 60.511 38.462 0.00 0.00 0.00 1.28
97 98 5.050363 CGTTCCCGTTCGATCAATCAAATAT 60.050 40.000 0.00 0.00 0.00 1.28
98 99 4.269123 CGTTCCCGTTCGATCAATCAAATA 59.731 41.667 0.00 0.00 0.00 1.40
99 100 3.063452 CGTTCCCGTTCGATCAATCAAAT 59.937 43.478 0.00 0.00 0.00 2.32
100 101 2.413796 CGTTCCCGTTCGATCAATCAAA 59.586 45.455 0.00 0.00 0.00 2.69
101 102 1.996898 CGTTCCCGTTCGATCAATCAA 59.003 47.619 0.00 0.00 0.00 2.57
102 103 1.202817 TCGTTCCCGTTCGATCAATCA 59.797 47.619 0.00 0.00 35.01 2.57
103 104 1.917273 TCGTTCCCGTTCGATCAATC 58.083 50.000 0.00 0.00 35.01 2.67
104 105 1.997606 GTTCGTTCCCGTTCGATCAAT 59.002 47.619 0.00 0.00 36.01 2.57
105 106 1.421382 GTTCGTTCCCGTTCGATCAA 58.579 50.000 0.00 0.00 36.01 2.57
106 107 0.388907 GGTTCGTTCCCGTTCGATCA 60.389 55.000 0.00 0.00 36.01 2.92
107 108 1.408474 CGGTTCGTTCCCGTTCGATC 61.408 60.000 0.00 0.00 40.59 3.69
108 109 1.444895 CGGTTCGTTCCCGTTCGAT 60.445 57.895 0.00 0.00 40.59 3.59
109 110 2.050168 CGGTTCGTTCCCGTTCGA 60.050 61.111 0.00 0.00 40.59 3.71
110 111 3.107661 CCGGTTCGTTCCCGTTCG 61.108 66.667 0.00 0.00 43.98 3.95
111 112 1.735559 CTCCGGTTCGTTCCCGTTC 60.736 63.158 0.00 0.00 43.98 3.95
112 113 2.341176 CTCCGGTTCGTTCCCGTT 59.659 61.111 0.00 0.00 43.98 4.44
113 114 3.688159 CCTCCGGTTCGTTCCCGT 61.688 66.667 0.00 0.00 43.98 5.28
114 115 4.446413 CCCTCCGGTTCGTTCCCG 62.446 72.222 0.00 3.71 45.07 5.14
115 116 4.772687 GCCCTCCGGTTCGTTCCC 62.773 72.222 0.00 0.00 0.00 3.97
116 117 3.540367 TTGCCCTCCGGTTCGTTCC 62.540 63.158 0.00 0.00 0.00 3.62
117 118 0.958876 ATTTGCCCTCCGGTTCGTTC 60.959 55.000 0.00 0.00 0.00 3.95
118 119 0.958876 GATTTGCCCTCCGGTTCGTT 60.959 55.000 0.00 0.00 0.00 3.85
119 120 1.376812 GATTTGCCCTCCGGTTCGT 60.377 57.895 0.00 0.00 0.00 3.85
120 121 1.078426 AGATTTGCCCTCCGGTTCG 60.078 57.895 0.00 0.00 0.00 3.95
121 122 0.322546 ACAGATTTGCCCTCCGGTTC 60.323 55.000 0.00 0.00 0.00 3.62
122 123 0.322546 GACAGATTTGCCCTCCGGTT 60.323 55.000 0.00 0.00 0.00 4.44
123 124 1.299976 GACAGATTTGCCCTCCGGT 59.700 57.895 0.00 0.00 0.00 5.28
124 125 1.452108 GGACAGATTTGCCCTCCGG 60.452 63.158 0.00 0.00 0.00 5.14
125 126 0.830648 TAGGACAGATTTGCCCTCCG 59.169 55.000 0.00 0.00 38.29 4.63
126 127 2.119495 TCTAGGACAGATTTGCCCTCC 58.881 52.381 0.00 0.00 38.29 4.30
127 128 3.914426 TTCTAGGACAGATTTGCCCTC 57.086 47.619 0.00 0.00 38.29 4.30
128 129 3.525199 ACATTCTAGGACAGATTTGCCCT 59.475 43.478 0.00 0.00 40.64 5.19
129 130 3.891049 ACATTCTAGGACAGATTTGCCC 58.109 45.455 0.00 0.00 31.77 5.36
130 131 6.203723 GTCATACATTCTAGGACAGATTTGCC 59.796 42.308 0.00 0.00 31.77 4.52
131 132 6.074088 CGTCATACATTCTAGGACAGATTTGC 60.074 42.308 0.00 0.00 31.77 3.68
132 133 6.980978 ACGTCATACATTCTAGGACAGATTTG 59.019 38.462 0.00 0.00 31.77 2.32
133 134 7.068839 AGACGTCATACATTCTAGGACAGATTT 59.931 37.037 19.50 0.00 31.77 2.17
134 135 6.547880 AGACGTCATACATTCTAGGACAGATT 59.452 38.462 19.50 0.00 31.77 2.40
135 136 6.016693 CAGACGTCATACATTCTAGGACAGAT 60.017 42.308 19.50 0.00 31.77 2.90
136 137 5.297029 CAGACGTCATACATTCTAGGACAGA 59.703 44.000 19.50 0.00 0.00 3.41
137 138 5.506483 CCAGACGTCATACATTCTAGGACAG 60.506 48.000 19.50 0.00 0.00 3.51
138 139 4.338400 CCAGACGTCATACATTCTAGGACA 59.662 45.833 19.50 0.00 0.00 4.02
139 140 4.261656 CCCAGACGTCATACATTCTAGGAC 60.262 50.000 19.50 0.00 0.00 3.85
140 141 3.889538 CCCAGACGTCATACATTCTAGGA 59.110 47.826 19.50 0.00 0.00 2.94
141 142 3.553096 GCCCAGACGTCATACATTCTAGG 60.553 52.174 19.50 0.00 0.00 3.02
142 143 3.319405 AGCCCAGACGTCATACATTCTAG 59.681 47.826 19.50 0.00 0.00 2.43
143 144 3.296854 AGCCCAGACGTCATACATTCTA 58.703 45.455 19.50 0.00 0.00 2.10
144 145 2.111384 AGCCCAGACGTCATACATTCT 58.889 47.619 19.50 2.28 0.00 2.40
145 146 2.604046 AGCCCAGACGTCATACATTC 57.396 50.000 19.50 0.00 0.00 2.67
146 147 2.632377 CAAGCCCAGACGTCATACATT 58.368 47.619 19.50 3.93 0.00 2.71
147 148 1.134401 CCAAGCCCAGACGTCATACAT 60.134 52.381 19.50 0.00 0.00 2.29
148 149 0.249120 CCAAGCCCAGACGTCATACA 59.751 55.000 19.50 0.00 0.00 2.29
149 150 0.462047 CCCAAGCCCAGACGTCATAC 60.462 60.000 19.50 4.01 0.00 2.39
150 151 1.904771 CCCAAGCCCAGACGTCATA 59.095 57.895 19.50 0.00 0.00 2.15
151 152 2.671070 CCCAAGCCCAGACGTCAT 59.329 61.111 19.50 0.00 0.00 3.06
152 153 4.329545 GCCCAAGCCCAGACGTCA 62.330 66.667 19.50 0.00 0.00 4.35
153 154 3.842925 TTGCCCAAGCCCAGACGTC 62.843 63.158 7.70 7.70 38.69 4.34
154 155 3.850098 CTTGCCCAAGCCCAGACGT 62.850 63.158 0.00 0.00 38.69 4.34
155 156 3.058160 CTTGCCCAAGCCCAGACG 61.058 66.667 0.00 0.00 38.69 4.18
156 157 0.827507 TTTCTTGCCCAAGCCCAGAC 60.828 55.000 3.18 0.00 38.28 3.51
157 158 0.105760 TTTTCTTGCCCAAGCCCAGA 60.106 50.000 3.18 0.00 38.28 3.86
158 159 0.758123 TTTTTCTTGCCCAAGCCCAG 59.242 50.000 3.18 0.00 38.28 4.45
159 160 0.758123 CTTTTTCTTGCCCAAGCCCA 59.242 50.000 3.18 0.00 38.28 5.36
160 161 0.758734 ACTTTTTCTTGCCCAAGCCC 59.241 50.000 3.18 0.00 38.28 5.19
161 162 2.029020 CCTACTTTTTCTTGCCCAAGCC 60.029 50.000 3.18 0.00 38.28 4.35
162 163 2.890945 TCCTACTTTTTCTTGCCCAAGC 59.109 45.455 3.18 0.00 38.28 4.01
163 164 5.529581 TTTCCTACTTTTTCTTGCCCAAG 57.470 39.130 1.62 1.62 39.71 3.61
164 165 5.941555 TTTTCCTACTTTTTCTTGCCCAA 57.058 34.783 0.00 0.00 0.00 4.12
165 166 5.423931 AGTTTTTCCTACTTTTTCTTGCCCA 59.576 36.000 0.00 0.00 0.00 5.36
166 167 5.914033 AGTTTTTCCTACTTTTTCTTGCCC 58.086 37.500 0.00 0.00 0.00 5.36
167 168 6.569780 TGAGTTTTTCCTACTTTTTCTTGCC 58.430 36.000 0.00 0.00 0.00 4.52
168 169 8.648557 ATTGAGTTTTTCCTACTTTTTCTTGC 57.351 30.769 0.00 0.00 0.00 4.01
171 172 9.914131 GCATATTGAGTTTTTCCTACTTTTTCT 57.086 29.630 0.00 0.00 0.00 2.52
172 173 8.850452 CGCATATTGAGTTTTTCCTACTTTTTC 58.150 33.333 0.00 0.00 0.00 2.29
173 174 7.812669 CCGCATATTGAGTTTTTCCTACTTTTT 59.187 33.333 0.00 0.00 0.00 1.94
174 175 7.039993 ACCGCATATTGAGTTTTTCCTACTTTT 60.040 33.333 0.00 0.00 0.00 2.27
175 176 6.433093 ACCGCATATTGAGTTTTTCCTACTTT 59.567 34.615 0.00 0.00 0.00 2.66
176 177 5.944007 ACCGCATATTGAGTTTTTCCTACTT 59.056 36.000 0.00 0.00 0.00 2.24
177 178 5.354234 CACCGCATATTGAGTTTTTCCTACT 59.646 40.000 0.00 0.00 0.00 2.57
178 179 5.123344 ACACCGCATATTGAGTTTTTCCTAC 59.877 40.000 0.00 0.00 0.00 3.18
179 180 5.250200 ACACCGCATATTGAGTTTTTCCTA 58.750 37.500 0.00 0.00 0.00 2.94
180 181 4.079253 ACACCGCATATTGAGTTTTTCCT 58.921 39.130 0.00 0.00 0.00 3.36
181 182 4.434713 ACACCGCATATTGAGTTTTTCC 57.565 40.909 0.00 0.00 0.00 3.13
182 183 6.763303 AAAACACCGCATATTGAGTTTTTC 57.237 33.333 0.00 0.00 36.19 2.29
183 184 7.544217 GGATAAAACACCGCATATTGAGTTTTT 59.456 33.333 0.00 0.00 39.20 1.94
184 185 7.033185 GGATAAAACACCGCATATTGAGTTTT 58.967 34.615 0.00 0.00 40.79 2.43
185 186 6.151985 TGGATAAAACACCGCATATTGAGTTT 59.848 34.615 0.00 0.00 0.00 2.66
186 187 5.650266 TGGATAAAACACCGCATATTGAGTT 59.350 36.000 0.00 0.00 0.00 3.01
187 188 5.189928 TGGATAAAACACCGCATATTGAGT 58.810 37.500 0.00 0.00 0.00 3.41
188 189 5.749596 TGGATAAAACACCGCATATTGAG 57.250 39.130 0.00 0.00 0.00 3.02
189 190 4.036262 GCTGGATAAAACACCGCATATTGA 59.964 41.667 0.00 0.00 0.00 2.57
190 191 4.036734 AGCTGGATAAAACACCGCATATTG 59.963 41.667 0.00 0.00 0.00 1.90
191 192 4.207165 AGCTGGATAAAACACCGCATATT 58.793 39.130 0.00 0.00 0.00 1.28
192 193 3.820557 AGCTGGATAAAACACCGCATAT 58.179 40.909 0.00 0.00 0.00 1.78
193 194 3.275617 AGCTGGATAAAACACCGCATA 57.724 42.857 0.00 0.00 0.00 3.14
194 195 2.128771 AGCTGGATAAAACACCGCAT 57.871 45.000 0.00 0.00 0.00 4.73
195 196 2.627945 CTAGCTGGATAAAACACCGCA 58.372 47.619 0.00 0.00 0.00 5.69
196 197 1.330829 GCTAGCTGGATAAAACACCGC 59.669 52.381 7.70 0.00 0.00 5.68
197 198 2.627945 TGCTAGCTGGATAAAACACCG 58.372 47.619 17.23 0.00 0.00 4.94
198 199 4.640201 TCATTGCTAGCTGGATAAAACACC 59.360 41.667 17.23 0.00 0.00 4.16
199 200 5.818136 TCATTGCTAGCTGGATAAAACAC 57.182 39.130 17.23 0.00 0.00 3.32
200 201 6.832520 TTTCATTGCTAGCTGGATAAAACA 57.167 33.333 17.23 0.00 0.00 2.83
201 202 7.274250 CACTTTTCATTGCTAGCTGGATAAAAC 59.726 37.037 17.23 0.00 0.00 2.43
202 203 7.039784 ACACTTTTCATTGCTAGCTGGATAAAA 60.040 33.333 17.23 13.83 0.00 1.52
203 204 6.434028 ACACTTTTCATTGCTAGCTGGATAAA 59.566 34.615 17.23 9.88 0.00 1.40
204 205 5.945784 ACACTTTTCATTGCTAGCTGGATAA 59.054 36.000 17.23 10.50 0.00 1.75
205 206 5.355071 CACACTTTTCATTGCTAGCTGGATA 59.645 40.000 17.23 3.36 0.00 2.59
206 207 4.157289 CACACTTTTCATTGCTAGCTGGAT 59.843 41.667 17.23 4.68 0.00 3.41
207 208 3.503363 CACACTTTTCATTGCTAGCTGGA 59.497 43.478 17.23 7.83 0.00 3.86
208 209 3.829948 CACACTTTTCATTGCTAGCTGG 58.170 45.455 17.23 5.41 0.00 4.85
209 210 3.057736 AGCACACTTTTCATTGCTAGCTG 60.058 43.478 17.23 6.97 43.51 4.24
210 211 3.152341 AGCACACTTTTCATTGCTAGCT 58.848 40.909 17.23 0.00 43.51 3.32
211 212 3.565905 AGCACACTTTTCATTGCTAGC 57.434 42.857 8.10 8.10 43.51 3.42
214 215 7.040478 TGACTAAATAGCACACTTTTCATTGCT 60.040 33.333 0.04 0.04 46.85 3.91
215 216 7.083858 TGACTAAATAGCACACTTTTCATTGC 58.916 34.615 0.00 0.00 35.08 3.56
216 217 9.462174 TTTGACTAAATAGCACACTTTTCATTG 57.538 29.630 0.00 0.00 0.00 2.82
233 234 9.308318 GCACACCTTTCTTTTTATTTGACTAAA 57.692 29.630 0.00 0.00 0.00 1.85
234 235 8.691797 AGCACACCTTTCTTTTTATTTGACTAA 58.308 29.630 0.00 0.00 0.00 2.24
235 236 8.232913 AGCACACCTTTCTTTTTATTTGACTA 57.767 30.769 0.00 0.00 0.00 2.59
236 237 7.112452 AGCACACCTTTCTTTTTATTTGACT 57.888 32.000 0.00 0.00 0.00 3.41
242 243 9.740710 ACTCTTATAGCACACCTTTCTTTTTAT 57.259 29.630 0.00 0.00 0.00 1.40
244 245 9.569122 TTACTCTTATAGCACACCTTTCTTTTT 57.431 29.630 0.00 0.00 0.00 1.94
245 246 9.569122 TTTACTCTTATAGCACACCTTTCTTTT 57.431 29.630 0.00 0.00 0.00 2.27
246 247 9.220767 CTTTACTCTTATAGCACACCTTTCTTT 57.779 33.333 0.00 0.00 0.00 2.52
247 248 8.376270 ACTTTACTCTTATAGCACACCTTTCTT 58.624 33.333 0.00 0.00 0.00 2.52
248 249 7.908453 ACTTTACTCTTATAGCACACCTTTCT 58.092 34.615 0.00 0.00 0.00 2.52
249 250 7.278203 GGACTTTACTCTTATAGCACACCTTTC 59.722 40.741 0.00 0.00 0.00 2.62
250 251 7.104290 GGACTTTACTCTTATAGCACACCTTT 58.896 38.462 0.00 0.00 0.00 3.11
251 252 6.351966 GGGACTTTACTCTTATAGCACACCTT 60.352 42.308 0.00 0.00 0.00 3.50
252 253 5.128991 GGGACTTTACTCTTATAGCACACCT 59.871 44.000 0.00 0.00 0.00 4.00
253 254 5.105064 TGGGACTTTACTCTTATAGCACACC 60.105 44.000 0.00 0.00 0.00 4.16
254 255 5.974108 TGGGACTTTACTCTTATAGCACAC 58.026 41.667 0.00 0.00 0.00 3.82
255 256 5.955959 TCTGGGACTTTACTCTTATAGCACA 59.044 40.000 0.00 0.00 0.00 4.57
256 257 6.466885 TCTGGGACTTTACTCTTATAGCAC 57.533 41.667 0.00 0.00 0.00 4.40
257 258 7.490657 TTTCTGGGACTTTACTCTTATAGCA 57.509 36.000 0.00 0.00 0.00 3.49
258 259 8.788325 TTTTTCTGGGACTTTACTCTTATAGC 57.212 34.615 0.00 0.00 0.00 2.97
259 260 9.945904 ACTTTTTCTGGGACTTTACTCTTATAG 57.054 33.333 0.00 0.00 0.00 1.31
260 261 9.720769 CACTTTTTCTGGGACTTTACTCTTATA 57.279 33.333 0.00 0.00 0.00 0.98
261 262 8.218488 ACACTTTTTCTGGGACTTTACTCTTAT 58.782 33.333 0.00 0.00 0.00 1.73
262 263 7.497909 CACACTTTTTCTGGGACTTTACTCTTA 59.502 37.037 0.00 0.00 0.00 2.10
263 264 6.318900 CACACTTTTTCTGGGACTTTACTCTT 59.681 38.462 0.00 0.00 0.00 2.85
264 265 5.823045 CACACTTTTTCTGGGACTTTACTCT 59.177 40.000 0.00 0.00 0.00 3.24
265 266 5.008712 CCACACTTTTTCTGGGACTTTACTC 59.991 44.000 0.00 0.00 0.00 2.59
266 267 4.887655 CCACACTTTTTCTGGGACTTTACT 59.112 41.667 0.00 0.00 0.00 2.24
267 268 4.499188 GCCACACTTTTTCTGGGACTTTAC 60.499 45.833 0.00 0.00 0.00 2.01
268 269 3.634910 GCCACACTTTTTCTGGGACTTTA 59.365 43.478 0.00 0.00 0.00 1.85
269 270 2.430694 GCCACACTTTTTCTGGGACTTT 59.569 45.455 0.00 0.00 0.00 2.66
270 271 2.031870 GCCACACTTTTTCTGGGACTT 58.968 47.619 0.00 0.00 0.00 3.01
271 272 1.064017 TGCCACACTTTTTCTGGGACT 60.064 47.619 0.00 0.00 0.00 3.85
272 273 1.398692 TGCCACACTTTTTCTGGGAC 58.601 50.000 0.00 0.00 0.00 4.46
273 274 2.380064 ATGCCACACTTTTTCTGGGA 57.620 45.000 0.00 0.00 0.00 4.37
274 275 3.392882 GAAATGCCACACTTTTTCTGGG 58.607 45.455 0.00 0.00 0.00 4.45
275 276 3.070015 AGGAAATGCCACACTTTTTCTGG 59.930 43.478 0.00 0.00 40.02 3.86
276 277 4.202141 TGAGGAAATGCCACACTTTTTCTG 60.202 41.667 0.00 0.00 40.02 3.02
277 278 3.960102 TGAGGAAATGCCACACTTTTTCT 59.040 39.130 0.00 0.00 40.02 2.52
278 279 4.320608 TGAGGAAATGCCACACTTTTTC 57.679 40.909 0.00 0.00 40.02 2.29
279 280 4.751767 TTGAGGAAATGCCACACTTTTT 57.248 36.364 0.00 0.00 36.95 1.94
280 281 4.751767 TTTGAGGAAATGCCACACTTTT 57.248 36.364 0.00 0.00 36.95 2.27
281 282 4.961438 ATTTGAGGAAATGCCACACTTT 57.039 36.364 0.00 0.00 36.95 2.66
282 283 4.961438 AATTTGAGGAAATGCCACACTT 57.039 36.364 0.00 0.00 36.95 3.16
283 284 4.220602 GGTAATTTGAGGAAATGCCACACT 59.779 41.667 0.00 0.00 36.95 3.55
284 285 4.494484 GGTAATTTGAGGAAATGCCACAC 58.506 43.478 0.00 0.00 36.95 3.82
285 286 3.513515 GGGTAATTTGAGGAAATGCCACA 59.486 43.478 0.00 0.00 40.02 4.17
286 287 3.118775 GGGGTAATTTGAGGAAATGCCAC 60.119 47.826 0.00 0.00 40.02 5.01
287 288 3.103742 GGGGTAATTTGAGGAAATGCCA 58.896 45.455 0.00 0.00 40.02 4.92
288 289 2.100749 CGGGGTAATTTGAGGAAATGCC 59.899 50.000 0.00 0.00 31.83 4.40
289 290 2.758423 ACGGGGTAATTTGAGGAAATGC 59.242 45.455 0.00 0.00 31.83 3.56
290 291 3.380320 GGACGGGGTAATTTGAGGAAATG 59.620 47.826 0.00 0.00 31.83 2.32
291 292 3.010808 TGGACGGGGTAATTTGAGGAAAT 59.989 43.478 0.00 0.00 32.87 2.17
292 293 2.375845 TGGACGGGGTAATTTGAGGAAA 59.624 45.455 0.00 0.00 0.00 3.13
293 294 1.986631 TGGACGGGGTAATTTGAGGAA 59.013 47.619 0.00 0.00 0.00 3.36
294 295 1.659022 TGGACGGGGTAATTTGAGGA 58.341 50.000 0.00 0.00 0.00 3.71
295 296 2.297701 CATGGACGGGGTAATTTGAGG 58.702 52.381 0.00 0.00 0.00 3.86
296 297 2.999331 ACATGGACGGGGTAATTTGAG 58.001 47.619 0.00 0.00 0.00 3.02
297 298 3.085533 CAACATGGACGGGGTAATTTGA 58.914 45.455 0.00 0.00 0.00 2.69
298 299 2.165437 CCAACATGGACGGGGTAATTTG 59.835 50.000 0.00 0.00 40.96 2.32
299 300 2.452505 CCAACATGGACGGGGTAATTT 58.547 47.619 0.00 0.00 40.96 1.82
300 301 1.958069 GCCAACATGGACGGGGTAATT 60.958 52.381 0.00 0.00 40.96 1.40
301 302 0.395173 GCCAACATGGACGGGGTAAT 60.395 55.000 0.00 0.00 40.96 1.89
302 303 1.001887 GCCAACATGGACGGGGTAA 60.002 57.895 0.00 0.00 40.96 2.85
303 304 2.672295 GCCAACATGGACGGGGTA 59.328 61.111 0.00 0.00 40.96 3.69
304 305 4.715523 CGCCAACATGGACGGGGT 62.716 66.667 0.00 0.00 40.96 4.95
305 306 4.402528 TCGCCAACATGGACGGGG 62.403 66.667 0.00 2.80 40.96 5.73
306 307 3.124921 GTCGCCAACATGGACGGG 61.125 66.667 0.00 0.00 40.96 5.28
307 308 2.047274 AGTCGCCAACATGGACGG 60.047 61.111 0.00 0.00 40.96 4.79
308 309 1.078759 GAGAGTCGCCAACATGGACG 61.079 60.000 0.00 3.94 40.96 4.79
375 378 2.031163 GGCGTGAGGAGCAACAGT 59.969 61.111 0.00 0.00 36.08 3.55
1173 1363 1.817099 CGTGGAAGCCTGGATGCTC 60.817 63.158 0.00 0.00 41.80 4.26
1638 1831 2.600439 TCTGGCCAGAGTGATGAGG 58.400 57.895 32.00 2.75 32.82 3.86
1709 1902 2.305635 TGCAATGCTGTCTCCTTAAGGA 59.694 45.455 22.94 22.94 43.08 3.36
1941 2137 2.722201 GGTACCTGTGCCTCGGAGG 61.722 68.421 19.95 19.95 38.80 4.30
2120 2325 3.128242 GCTAGATGTTGCTCAATGCTTGT 59.872 43.478 0.00 0.00 43.37 3.16
2158 2365 3.626930 TGGAACAAAACTGGTTAGCTGT 58.373 40.909 0.00 0.00 31.92 4.40
2485 2858 7.064728 CAGTAATTCTTACAAGGCCAGACTAAC 59.935 40.741 5.01 0.00 38.60 2.34
2877 3486 6.018994 GTGTCTGTAAAACTTACAGGTGTCTG 60.019 42.308 20.79 0.00 43.67 3.51
2878 3487 6.047231 GTGTCTGTAAAACTTACAGGTGTCT 58.953 40.000 20.79 0.00 43.67 3.41
3406 5578 5.063817 CGTTGCAATCTGACTGATACAATGA 59.936 40.000 0.59 0.00 38.88 2.57
3778 5950 4.945411 TGATCATCAAAAATTCCTGGGGA 58.055 39.130 0.00 0.00 0.00 4.81
3839 6014 7.599998 ACAAATCTCCATTATTTGCTTTCACAC 59.400 33.333 8.13 0.00 44.52 3.82
3980 6155 2.400399 TGGCGAGTGTAGTTTTCTTCG 58.600 47.619 0.00 0.00 0.00 3.79
4572 6747 2.911484 TGTGGCCCAAACAAAAATGAC 58.089 42.857 0.00 0.00 0.00 3.06
4772 6964 6.754675 CGGTACATCACAACATAACAGTATCA 59.245 38.462 0.00 0.00 0.00 2.15
4773 6965 6.755141 ACGGTACATCACAACATAACAGTATC 59.245 38.462 0.00 0.00 0.00 2.24
4777 6969 5.856126 AACGGTACATCACAACATAACAG 57.144 39.130 0.00 0.00 0.00 3.16
4931 7126 1.711824 GTTTGCGCGTGGATTTGTTAC 59.288 47.619 8.43 0.00 0.00 2.50
5024 7221 9.905713 AATCATTAAGGTAGCAAATCAGAGTAA 57.094 29.630 0.00 0.00 0.00 2.24
5032 7229 7.754924 CGACAACAAATCATTAAGGTAGCAAAT 59.245 33.333 0.00 0.00 0.00 2.32
5057 7268 2.352323 GGCAAACAGTTACCCAAATCCG 60.352 50.000 0.00 0.00 0.00 4.18
5101 7312 5.121611 GTCGATTGACACAACATTGGACATA 59.878 40.000 8.31 0.00 44.82 2.29
5210 7422 3.005684 CCACTATTCACCAAGCTTGCAAA 59.994 43.478 21.43 13.82 0.00 3.68
5213 7425 1.474077 CCCACTATTCACCAAGCTTGC 59.526 52.381 21.43 0.00 0.00 4.01
5214 7426 2.795329 ACCCACTATTCACCAAGCTTG 58.205 47.619 19.93 19.93 0.00 4.01
5215 7427 4.650972 TTACCCACTATTCACCAAGCTT 57.349 40.909 0.00 0.00 0.00 3.74
5216 7428 4.862641 ATTACCCACTATTCACCAAGCT 57.137 40.909 0.00 0.00 0.00 3.74
5217 7429 6.376018 TGTTAATTACCCACTATTCACCAAGC 59.624 38.462 0.00 0.00 0.00 4.01
5218 7430 7.931578 TGTTAATTACCCACTATTCACCAAG 57.068 36.000 0.00 0.00 0.00 3.61
5219 7431 7.147983 GCATGTTAATTACCCACTATTCACCAA 60.148 37.037 0.00 0.00 0.00 3.67
5220 7432 6.320164 GCATGTTAATTACCCACTATTCACCA 59.680 38.462 0.00 0.00 0.00 4.17
5221 7433 6.546034 AGCATGTTAATTACCCACTATTCACC 59.454 38.462 0.00 0.00 0.00 4.02
5222 7434 7.568199 AGCATGTTAATTACCCACTATTCAC 57.432 36.000 0.00 0.00 0.00 3.18
5223 7435 9.337396 CTAAGCATGTTAATTACCCACTATTCA 57.663 33.333 0.00 0.00 0.00 2.57
5224 7436 8.784043 CCTAAGCATGTTAATTACCCACTATTC 58.216 37.037 0.00 0.00 0.00 1.75
5225 7437 8.279361 ACCTAAGCATGTTAATTACCCACTATT 58.721 33.333 0.00 0.00 0.00 1.73
5226 7438 7.812306 ACCTAAGCATGTTAATTACCCACTAT 58.188 34.615 0.00 0.00 0.00 2.12
5249 7461 7.308435 CAAAACAATCCTATTCTGACTCAACC 58.692 38.462 0.00 0.00 0.00 3.77
5260 7472 7.734942 ACAACATTCACCAAAACAATCCTATT 58.265 30.769 0.00 0.00 0.00 1.73
5268 7480 6.108687 TGCAATTACAACATTCACCAAAACA 58.891 32.000 0.00 0.00 0.00 2.83
5269 7481 6.595772 TGCAATTACAACATTCACCAAAAC 57.404 33.333 0.00 0.00 0.00 2.43
5326 7538 9.796180 TTTTTAAGAGGGTAGTATAACTTGCAA 57.204 29.630 0.00 0.00 0.00 4.08
5340 7552 6.296145 CCTCTGATCTCACTTTTTAAGAGGGT 60.296 42.308 9.50 0.00 43.81 4.34
5355 7567 5.794894 TCACTTTGTTTACCCTCTGATCTC 58.205 41.667 0.00 0.00 0.00 2.75
5356 7568 5.825593 TCACTTTGTTTACCCTCTGATCT 57.174 39.130 0.00 0.00 0.00 2.75
5357 7569 5.412904 CCTTCACTTTGTTTACCCTCTGATC 59.587 44.000 0.00 0.00 0.00 2.92
5358 7570 5.073144 TCCTTCACTTTGTTTACCCTCTGAT 59.927 40.000 0.00 0.00 0.00 2.90
5359 7571 4.410883 TCCTTCACTTTGTTTACCCTCTGA 59.589 41.667 0.00 0.00 0.00 3.27
5360 7572 4.714632 TCCTTCACTTTGTTTACCCTCTG 58.285 43.478 0.00 0.00 0.00 3.35
5361 7573 4.658901 TCTCCTTCACTTTGTTTACCCTCT 59.341 41.667 0.00 0.00 0.00 3.69
5362 7574 4.969484 TCTCCTTCACTTTGTTTACCCTC 58.031 43.478 0.00 0.00 0.00 4.30
5363 7575 4.747009 GCTCTCCTTCACTTTGTTTACCCT 60.747 45.833 0.00 0.00 0.00 4.34
5364 7576 3.502595 GCTCTCCTTCACTTTGTTTACCC 59.497 47.826 0.00 0.00 0.00 3.69
5365 7577 3.186613 CGCTCTCCTTCACTTTGTTTACC 59.813 47.826 0.00 0.00 0.00 2.85
5366 7578 3.364068 GCGCTCTCCTTCACTTTGTTTAC 60.364 47.826 0.00 0.00 0.00 2.01
5367 7579 2.806244 GCGCTCTCCTTCACTTTGTTTA 59.194 45.455 0.00 0.00 0.00 2.01
5368 7580 1.604278 GCGCTCTCCTTCACTTTGTTT 59.396 47.619 0.00 0.00 0.00 2.83
5369 7581 1.202698 AGCGCTCTCCTTCACTTTGTT 60.203 47.619 2.64 0.00 0.00 2.83
5370 7582 0.394565 AGCGCTCTCCTTCACTTTGT 59.605 50.000 2.64 0.00 0.00 2.83
5371 7583 1.074752 GAGCGCTCTCCTTCACTTTG 58.925 55.000 29.88 0.00 33.19 2.77
5372 7584 3.523806 GAGCGCTCTCCTTCACTTT 57.476 52.632 29.88 0.00 33.19 2.66
5381 7593 1.140804 GAAGTCCTGGAGCGCTCTC 59.859 63.158 34.46 24.64 38.62 3.20
5382 7594 1.607756 TGAAGTCCTGGAGCGCTCT 60.608 57.895 34.46 15.11 0.00 4.09
5383 7595 1.446966 GTGAAGTCCTGGAGCGCTC 60.447 63.158 29.38 29.38 0.00 5.03
5384 7596 1.910772 AGTGAAGTCCTGGAGCGCT 60.911 57.895 11.27 11.27 0.00 5.92
5385 7597 1.739562 CAGTGAAGTCCTGGAGCGC 60.740 63.158 0.00 0.00 0.00 5.92
5386 7598 0.318441 TTCAGTGAAGTCCTGGAGCG 59.682 55.000 0.08 0.00 0.00 5.03
5387 7599 2.777832 ATTCAGTGAAGTCCTGGAGC 57.222 50.000 11.91 0.00 0.00 4.70
5388 7600 6.481644 GCTATAAATTCAGTGAAGTCCTGGAG 59.518 42.308 11.91 4.45 0.00 3.86
5389 7601 6.070251 TGCTATAAATTCAGTGAAGTCCTGGA 60.070 38.462 11.91 0.00 0.00 3.86
5390 7602 6.037610 GTGCTATAAATTCAGTGAAGTCCTGG 59.962 42.308 11.91 3.35 0.00 4.45
5391 7603 6.820656 AGTGCTATAAATTCAGTGAAGTCCTG 59.179 38.462 11.91 2.16 0.00 3.86
5392 7604 6.951971 AGTGCTATAAATTCAGTGAAGTCCT 58.048 36.000 11.91 2.63 0.00 3.85
5393 7605 6.258947 GGAGTGCTATAAATTCAGTGAAGTCC 59.741 42.308 11.91 3.02 0.00 3.85
5394 7606 7.044798 AGGAGTGCTATAAATTCAGTGAAGTC 58.955 38.462 11.91 0.00 0.00 3.01
5395 7607 6.951971 AGGAGTGCTATAAATTCAGTGAAGT 58.048 36.000 11.91 5.77 0.00 3.01
5396 7608 7.335422 ACAAGGAGTGCTATAAATTCAGTGAAG 59.665 37.037 11.91 0.00 0.00 3.02
5397 7609 7.119699 CACAAGGAGTGCTATAAATTCAGTGAA 59.880 37.037 8.27 8.27 42.15 3.18
5398 7610 6.595326 CACAAGGAGTGCTATAAATTCAGTGA 59.405 38.462 0.00 0.00 42.15 3.41
5399 7611 6.779117 CACAAGGAGTGCTATAAATTCAGTG 58.221 40.000 0.00 0.00 42.15 3.66
5400 7612 6.992063 CACAAGGAGTGCTATAAATTCAGT 57.008 37.500 0.00 0.00 42.15 3.41
5416 7628 3.509575 GCACATACAATTTCCCACAAGGA 59.490 43.478 0.00 0.00 45.68 3.36
5417 7629 3.673052 CGCACATACAATTTCCCACAAGG 60.673 47.826 0.00 0.00 0.00 3.61
5418 7630 3.057596 ACGCACATACAATTTCCCACAAG 60.058 43.478 0.00 0.00 0.00 3.16
5419 7631 2.887783 ACGCACATACAATTTCCCACAA 59.112 40.909 0.00 0.00 0.00 3.33
5420 7632 2.509569 ACGCACATACAATTTCCCACA 58.490 42.857 0.00 0.00 0.00 4.17
5421 7633 4.155280 AGTTACGCACATACAATTTCCCAC 59.845 41.667 0.00 0.00 0.00 4.61
5422 7634 4.328536 AGTTACGCACATACAATTTCCCA 58.671 39.130 0.00 0.00 0.00 4.37
5423 7635 4.634443 AGAGTTACGCACATACAATTTCCC 59.366 41.667 0.00 0.00 0.00 3.97
5424 7636 5.500290 CGAGAGTTACGCACATACAATTTCC 60.500 44.000 0.00 0.00 0.00 3.13
5425 7637 5.061808 ACGAGAGTTACGCACATACAATTTC 59.938 40.000 0.00 0.00 46.40 2.17
5426 7638 4.927425 ACGAGAGTTACGCACATACAATTT 59.073 37.500 0.00 0.00 46.40 1.82
5427 7639 4.326278 CACGAGAGTTACGCACATACAATT 59.674 41.667 0.00 0.00 46.40 2.32
5428 7640 3.857665 CACGAGAGTTACGCACATACAAT 59.142 43.478 0.00 0.00 46.40 2.71
5429 7641 3.239254 CACGAGAGTTACGCACATACAA 58.761 45.455 0.00 0.00 46.40 2.41
5430 7642 2.227149 ACACGAGAGTTACGCACATACA 59.773 45.455 0.00 0.00 46.40 2.29
5431 7643 2.860062 ACACGAGAGTTACGCACATAC 58.140 47.619 0.00 0.00 46.40 2.39
5432 7644 3.564235 AACACGAGAGTTACGCACATA 57.436 42.857 0.00 0.00 46.40 2.29
5433 7645 2.433868 AACACGAGAGTTACGCACAT 57.566 45.000 0.00 0.00 46.40 3.21
5434 7646 2.212869 AAACACGAGAGTTACGCACA 57.787 45.000 0.00 0.00 46.40 4.57
5435 7647 3.671928 ACATAAACACGAGAGTTACGCAC 59.328 43.478 0.00 0.00 46.40 5.34
5436 7648 3.904571 ACATAAACACGAGAGTTACGCA 58.095 40.909 0.00 0.00 46.40 5.24
5437 7649 4.898328 AACATAAACACGAGAGTTACGC 57.102 40.909 0.00 0.00 46.40 4.42
5438 7650 6.442487 TCAAACATAAACACGAGAGTTACG 57.558 37.500 0.00 0.00 46.40 3.18
5439 7651 9.136952 ACTATCAAACATAAACACGAGAGTTAC 57.863 33.333 0.00 0.00 46.40 2.50
5440 7652 9.135843 CACTATCAAACATAAACACGAGAGTTA 57.864 33.333 0.00 0.00 46.40 2.24
5441 7653 7.117812 CCACTATCAAACATAAACACGAGAGTT 59.882 37.037 0.00 0.00 46.40 3.01
5443 7655 6.811665 TCCACTATCAAACATAAACACGAGAG 59.188 38.462 0.00 0.00 0.00 3.20
5444 7656 6.693466 TCCACTATCAAACATAAACACGAGA 58.307 36.000 0.00 0.00 0.00 4.04
5445 7657 6.961359 TCCACTATCAAACATAAACACGAG 57.039 37.500 0.00 0.00 0.00 4.18
5446 7658 6.876789 ACATCCACTATCAAACATAAACACGA 59.123 34.615 0.00 0.00 0.00 4.35
5447 7659 7.072177 ACATCCACTATCAAACATAAACACG 57.928 36.000 0.00 0.00 0.00 4.49
5448 7660 8.395633 GGTACATCCACTATCAAACATAAACAC 58.604 37.037 0.00 0.00 35.97 3.32
5449 7661 8.103935 TGGTACATCCACTATCAAACATAAACA 58.896 33.333 0.00 0.00 41.93 2.83
5450 7662 8.500753 TGGTACATCCACTATCAAACATAAAC 57.499 34.615 0.00 0.00 41.93 2.01
5451 7663 7.773224 CCTGGTACATCCACTATCAAACATAAA 59.227 37.037 0.00 0.00 41.93 1.40
5452 7664 7.279615 CCTGGTACATCCACTATCAAACATAA 58.720 38.462 0.00 0.00 41.93 1.90
5453 7665 6.183361 CCCTGGTACATCCACTATCAAACATA 60.183 42.308 0.00 0.00 41.93 2.29
5454 7666 5.397899 CCCTGGTACATCCACTATCAAACAT 60.398 44.000 0.00 0.00 41.93 2.71
5455 7667 4.080582 CCCTGGTACATCCACTATCAAACA 60.081 45.833 0.00 0.00 41.93 2.83
5456 7668 4.080526 ACCCTGGTACATCCACTATCAAAC 60.081 45.833 0.00 0.00 41.93 2.93
5457 7669 4.108570 ACCCTGGTACATCCACTATCAAA 58.891 43.478 0.00 0.00 41.93 2.69
5458 7670 3.731431 ACCCTGGTACATCCACTATCAA 58.269 45.455 0.00 0.00 41.93 2.57
5459 7671 3.414759 ACCCTGGTACATCCACTATCA 57.585 47.619 0.00 0.00 41.93 2.15
5460 7672 4.900054 ACTAACCCTGGTACATCCACTATC 59.100 45.833 0.00 0.00 41.93 2.08
5461 7673 4.892198 ACTAACCCTGGTACATCCACTAT 58.108 43.478 0.00 0.00 41.93 2.12
5462 7674 4.341863 ACTAACCCTGGTACATCCACTA 57.658 45.455 0.00 0.00 41.93 2.74
5463 7675 3.200958 ACTAACCCTGGTACATCCACT 57.799 47.619 0.00 0.00 41.93 4.00
5464 7676 3.606687 CAACTAACCCTGGTACATCCAC 58.393 50.000 0.00 0.00 41.93 4.02
5465 7677 2.026636 GCAACTAACCCTGGTACATCCA 60.027 50.000 0.00 0.00 45.01 3.41
5466 7678 2.238898 AGCAACTAACCCTGGTACATCC 59.761 50.000 0.00 0.00 38.20 3.51
5467 7679 3.629142 AGCAACTAACCCTGGTACATC 57.371 47.619 0.00 0.00 38.20 3.06
5468 7680 3.329520 TGAAGCAACTAACCCTGGTACAT 59.670 43.478 0.00 0.00 38.20 2.29
5469 7681 2.706723 TGAAGCAACTAACCCTGGTACA 59.293 45.455 0.00 0.00 0.00 2.90
5470 7682 3.412237 TGAAGCAACTAACCCTGGTAC 57.588 47.619 0.00 0.00 0.00 3.34
5471 7683 3.746940 GTTGAAGCAACTAACCCTGGTA 58.253 45.455 3.21 0.00 40.73 3.25
5472 7684 2.583143 GTTGAAGCAACTAACCCTGGT 58.417 47.619 3.21 0.00 40.73 4.00
5482 7694 4.033358 CAGATACCGATGAGTTGAAGCAAC 59.967 45.833 2.22 2.22 43.83 4.17
5483 7695 4.081697 TCAGATACCGATGAGTTGAAGCAA 60.082 41.667 0.00 0.00 0.00 3.91
5484 7696 3.447229 TCAGATACCGATGAGTTGAAGCA 59.553 43.478 0.00 0.00 0.00 3.91
5485 7697 3.799420 GTCAGATACCGATGAGTTGAAGC 59.201 47.826 0.00 0.00 0.00 3.86
5486 7698 4.998788 TGTCAGATACCGATGAGTTGAAG 58.001 43.478 0.00 0.00 0.00 3.02
5487 7699 5.047306 ACTTGTCAGATACCGATGAGTTGAA 60.047 40.000 0.00 0.00 0.00 2.69
5488 7700 4.462834 ACTTGTCAGATACCGATGAGTTGA 59.537 41.667 0.00 0.00 0.00 3.18
5489 7701 4.564372 CACTTGTCAGATACCGATGAGTTG 59.436 45.833 0.00 0.00 0.00 3.16
5490 7702 4.462834 TCACTTGTCAGATACCGATGAGTT 59.537 41.667 0.00 0.00 0.00 3.01
5491 7703 4.017126 TCACTTGTCAGATACCGATGAGT 58.983 43.478 0.00 0.00 0.00 3.41
5492 7704 4.639135 TCACTTGTCAGATACCGATGAG 57.361 45.455 0.00 0.00 0.00 2.90
5493 7705 5.598416 ATTCACTTGTCAGATACCGATGA 57.402 39.130 0.00 0.00 0.00 2.92
5494 7706 7.147976 TCATATTCACTTGTCAGATACCGATG 58.852 38.462 0.00 0.00 0.00 3.84
5495 7707 7.290110 TCATATTCACTTGTCAGATACCGAT 57.710 36.000 0.00 0.00 0.00 4.18
5496 7708 6.709018 TCATATTCACTTGTCAGATACCGA 57.291 37.500 0.00 0.00 0.00 4.69
5497 7709 7.492669 AGTTTCATATTCACTTGTCAGATACCG 59.507 37.037 0.00 0.00 0.00 4.02
5498 7710 8.723942 AGTTTCATATTCACTTGTCAGATACC 57.276 34.615 0.00 0.00 0.00 2.73
5500 7712 9.942850 TGAAGTTTCATATTCACTTGTCAGATA 57.057 29.630 0.00 0.00 30.71 1.98
5501 7713 8.853077 TGAAGTTTCATATTCACTTGTCAGAT 57.147 30.769 0.00 0.00 30.71 2.90
5511 7723 8.902540 ACTAACACAGTGAAGTTTCATATTCA 57.097 30.769 7.81 0.00 39.73 2.57
5516 7728 9.337396 TGAAATACTAACACAGTGAAGTTTCAT 57.663 29.630 7.81 0.00 39.73 2.57
5517 7729 8.725405 TGAAATACTAACACAGTGAAGTTTCA 57.275 30.769 7.81 13.56 38.24 2.69
5521 7733 9.998106 ACTAATGAAATACTAACACAGTGAAGT 57.002 29.630 7.81 12.39 38.24 3.01
5524 7736 9.772973 ACAACTAATGAAATACTAACACAGTGA 57.227 29.630 7.81 0.00 38.24 3.41
5526 7738 9.216117 GGACAACTAATGAAATACTAACACAGT 57.784 33.333 0.00 0.00 41.62 3.55
5527 7739 8.665685 GGGACAACTAATGAAATACTAACACAG 58.334 37.037 0.00 0.00 0.00 3.66
5528 7740 8.158132 TGGGACAACTAATGAAATACTAACACA 58.842 33.333 0.00 0.00 31.92 3.72
5529 7741 8.556213 TGGGACAACTAATGAAATACTAACAC 57.444 34.615 0.00 0.00 31.92 3.32
5549 7761 9.901172 TTAATAGGAGAAAACTCTAAATGGGAC 57.099 33.333 0.00 0.00 0.00 4.46
5551 7763 9.907229 ACTTAATAGGAGAAAACTCTAAATGGG 57.093 33.333 0.00 0.00 0.00 4.00
5558 7770 9.930693 CACAGTTACTTAATAGGAGAAAACTCT 57.069 33.333 0.00 0.00 0.00 3.24
5559 7771 9.708092 ACACAGTTACTTAATAGGAGAAAACTC 57.292 33.333 0.00 0.00 0.00 3.01
5560 7772 9.490379 CACACAGTTACTTAATAGGAGAAAACT 57.510 33.333 0.00 0.00 0.00 2.66
5561 7773 9.269453 ACACACAGTTACTTAATAGGAGAAAAC 57.731 33.333 0.00 0.00 0.00 2.43
5562 7774 9.268268 CACACACAGTTACTTAATAGGAGAAAA 57.732 33.333 0.00 0.00 0.00 2.29
5563 7775 8.644216 TCACACACAGTTACTTAATAGGAGAAA 58.356 33.333 0.00 0.00 0.00 2.52
5564 7776 8.185506 TCACACACAGTTACTTAATAGGAGAA 57.814 34.615 0.00 0.00 0.00 2.87
5565 7777 7.770366 TCACACACAGTTACTTAATAGGAGA 57.230 36.000 0.00 0.00 0.00 3.71
5566 7778 9.517609 GTATCACACACAGTTACTTAATAGGAG 57.482 37.037 0.00 0.00 0.00 3.69
5567 7779 8.472413 GGTATCACACACAGTTACTTAATAGGA 58.528 37.037 0.00 0.00 0.00 2.94
5568 7780 8.255206 TGGTATCACACACAGTTACTTAATAGG 58.745 37.037 0.00 0.00 0.00 2.57
5569 7781 9.817809 ATGGTATCACACACAGTTACTTAATAG 57.182 33.333 0.00 0.00 0.00 1.73
5570 7782 9.594478 CATGGTATCACACACAGTTACTTAATA 57.406 33.333 0.00 0.00 0.00 0.98
5571 7783 8.100791 ACATGGTATCACACACAGTTACTTAAT 58.899 33.333 0.00 0.00 0.00 1.40
5572 7784 7.446769 ACATGGTATCACACACAGTTACTTAA 58.553 34.615 0.00 0.00 0.00 1.85
5573 7785 6.999950 ACATGGTATCACACACAGTTACTTA 58.000 36.000 0.00 0.00 0.00 2.24
5574 7786 5.865085 ACATGGTATCACACACAGTTACTT 58.135 37.500 0.00 0.00 0.00 2.24
5575 7787 5.483685 ACATGGTATCACACACAGTTACT 57.516 39.130 0.00 0.00 0.00 2.24
5576 7788 6.554334 AAACATGGTATCACACACAGTTAC 57.446 37.500 0.00 0.00 0.00 2.50
5577 7789 7.500892 AGAAAAACATGGTATCACACACAGTTA 59.499 33.333 0.00 0.00 0.00 2.24
5578 7790 6.321181 AGAAAAACATGGTATCACACACAGTT 59.679 34.615 0.00 0.00 0.00 3.16
5579 7791 5.827797 AGAAAAACATGGTATCACACACAGT 59.172 36.000 0.00 0.00 0.00 3.55
5580 7792 6.317789 AGAAAAACATGGTATCACACACAG 57.682 37.500 0.00 0.00 0.00 3.66
5581 7793 7.220740 TCTAGAAAAACATGGTATCACACACA 58.779 34.615 0.00 0.00 0.00 3.72
5582 7794 7.667043 TCTAGAAAAACATGGTATCACACAC 57.333 36.000 0.00 0.00 0.00 3.82
5583 7795 8.862325 ATTCTAGAAAAACATGGTATCACACA 57.138 30.769 9.71 0.00 0.00 3.72
5585 7797 9.391006 GGTATTCTAGAAAAACATGGTATCACA 57.609 33.333 9.71 0.00 0.00 3.58
5586 7798 9.391006 TGGTATTCTAGAAAAACATGGTATCAC 57.609 33.333 9.71 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.