Multiple sequence alignment - TraesCS3D01G351700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G351700 chr3D 100.000 2759 0 0 1 2759 462839962 462837204 0.000000e+00 5096.0
1 TraesCS3D01G351700 chr3D 92.446 781 53 5 1 778 147470540 147469763 0.000000e+00 1110.0
2 TraesCS3D01G351700 chr3D 92.417 422 26 4 1371 1791 308763771 308764187 5.090000e-167 597.0
3 TraesCS3D01G351700 chr3D 96.172 209 8 0 1992 2200 29301001 29300793 2.630000e-90 342.0
4 TraesCS3D01G351700 chr3D 89.328 253 25 2 2393 2644 462833030 462832779 1.590000e-82 316.0
5 TraesCS3D01G351700 chr3D 82.474 97 8 2 2672 2759 462832781 462832685 2.950000e-10 76.8
6 TraesCS3D01G351700 chr3B 92.546 1194 48 18 830 1996 615632962 615631783 0.000000e+00 1674.0
7 TraesCS3D01G351700 chr3A 90.630 1270 55 34 777 1996 605981871 605980616 0.000000e+00 1628.0
8 TraesCS3D01G351700 chr3A 93.578 218 14 0 2411 2628 605980277 605980060 2.650000e-85 326.0
9 TraesCS3D01G351700 chr2D 93.974 780 43 4 1 777 12910029 12910807 0.000000e+00 1177.0
10 TraesCS3D01G351700 chr2D 91.720 785 56 7 1 777 9630516 9629733 0.000000e+00 1081.0
11 TraesCS3D01G351700 chr2D 97.549 204 3 2 1997 2199 340929847 340930049 5.660000e-92 348.0
12 TraesCS3D01G351700 chr6B 92.967 782 49 5 1 777 349470089 349469309 0.000000e+00 1134.0
13 TraesCS3D01G351700 chr1D 93.247 770 47 5 1 768 204026279 204025513 0.000000e+00 1129.0
14 TraesCS3D01G351700 chr1D 95.755 212 7 2 1997 2206 128386711 128386922 9.460000e-90 340.0
15 TraesCS3D01G351700 chr2B 92.583 782 53 5 1 778 622655113 622655893 0.000000e+00 1118.0
16 TraesCS3D01G351700 chr2B 91.125 631 42 10 1168 1793 654655282 654655903 0.000000e+00 843.0
17 TraesCS3D01G351700 chr2B 91.111 630 45 9 1169 1793 654705386 654706009 0.000000e+00 843.0
18 TraesCS3D01G351700 chr2B 90.808 631 47 6 1168 1793 654734311 654734935 0.000000e+00 833.0
19 TraesCS3D01G351700 chr2B 90.794 630 46 10 1168 1793 654683554 654684175 0.000000e+00 832.0
20 TraesCS3D01G351700 chr6D 92.199 782 55 5 1 777 362922943 362922163 0.000000e+00 1101.0
21 TraesCS3D01G351700 chr6D 92.258 775 55 5 7 777 20126596 20125823 0.000000e+00 1094.0
22 TraesCS3D01G351700 chr6D 97.549 204 4 1 1997 2199 244681611 244681814 5.660000e-92 348.0
23 TraesCS3D01G351700 chr7D 92.082 783 52 9 1 777 178124154 178124932 0.000000e+00 1094.0
24 TraesCS3D01G351700 chr7D 98.995 199 2 0 1997 2195 480649407 480649605 9.400000e-95 357.0
25 TraesCS3D01G351700 chr7D 97.549 204 4 1 1997 2199 118926104 118926307 5.660000e-92 348.0
26 TraesCS3D01G351700 chrUn 91.587 630 41 10 1168 1793 248128717 248129338 0.000000e+00 859.0
27 TraesCS3D01G351700 chr1A 92.391 368 24 4 1168 1531 551827757 551828124 3.150000e-144 521.0
28 TraesCS3D01G351700 chr1A 95.205 146 7 0 1110 1255 513745291 513745146 5.940000e-57 231.0
29 TraesCS3D01G351700 chr1A 95.238 126 5 1 1672 1796 551828427 551828552 6.030000e-47 198.0
30 TraesCS3D01G351700 chr5D 100.000 199 0 0 1997 2195 378897238 378897040 4.340000e-98 368.0
31 TraesCS3D01G351700 chr5D 97.990 199 4 0 1997 2195 332408645 332408843 2.030000e-91 346.0
32 TraesCS3D01G351700 chr5B 99.507 203 0 1 1993 2195 21593810 21593609 4.340000e-98 368.0
33 TraesCS3D01G351700 chr5A 82.609 207 24 10 1110 1313 562487269 562487466 3.650000e-39 172.0
34 TraesCS3D01G351700 chr2A 81.600 125 20 3 2371 2492 32341536 32341660 1.750000e-17 100.0
35 TraesCS3D01G351700 chr2A 84.848 99 13 2 2371 2467 32346728 32346826 6.290000e-17 99.0
36 TraesCS3D01G351700 chr2A 95.556 45 2 0 2279 2323 32341356 32341400 3.810000e-09 73.1
37 TraesCS3D01G351700 chr4B 91.667 48 4 0 2279 2326 576405997 576405950 1.770000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G351700 chr3D 462837204 462839962 2758 True 5096.0 5096 100.0000 1 2759 1 chr3D.!!$R3 2758
1 TraesCS3D01G351700 chr3D 147469763 147470540 777 True 1110.0 1110 92.4460 1 778 1 chr3D.!!$R2 777
2 TraesCS3D01G351700 chr3B 615631783 615632962 1179 True 1674.0 1674 92.5460 830 1996 1 chr3B.!!$R1 1166
3 TraesCS3D01G351700 chr3A 605980060 605981871 1811 True 977.0 1628 92.1040 777 2628 2 chr3A.!!$R1 1851
4 TraesCS3D01G351700 chr2D 12910029 12910807 778 False 1177.0 1177 93.9740 1 777 1 chr2D.!!$F1 776
5 TraesCS3D01G351700 chr2D 9629733 9630516 783 True 1081.0 1081 91.7200 1 777 1 chr2D.!!$R1 776
6 TraesCS3D01G351700 chr6B 349469309 349470089 780 True 1134.0 1134 92.9670 1 777 1 chr6B.!!$R1 776
7 TraesCS3D01G351700 chr1D 204025513 204026279 766 True 1129.0 1129 93.2470 1 768 1 chr1D.!!$R1 767
8 TraesCS3D01G351700 chr2B 622655113 622655893 780 False 1118.0 1118 92.5830 1 778 1 chr2B.!!$F1 777
9 TraesCS3D01G351700 chr2B 654655282 654655903 621 False 843.0 843 91.1250 1168 1793 1 chr2B.!!$F2 625
10 TraesCS3D01G351700 chr2B 654705386 654706009 623 False 843.0 843 91.1110 1169 1793 1 chr2B.!!$F4 624
11 TraesCS3D01G351700 chr2B 654734311 654734935 624 False 833.0 833 90.8080 1168 1793 1 chr2B.!!$F5 625
12 TraesCS3D01G351700 chr2B 654683554 654684175 621 False 832.0 832 90.7940 1168 1793 1 chr2B.!!$F3 625
13 TraesCS3D01G351700 chr6D 362922163 362922943 780 True 1101.0 1101 92.1990 1 777 1 chr6D.!!$R2 776
14 TraesCS3D01G351700 chr6D 20125823 20126596 773 True 1094.0 1094 92.2580 7 777 1 chr6D.!!$R1 770
15 TraesCS3D01G351700 chr7D 178124154 178124932 778 False 1094.0 1094 92.0820 1 777 1 chr7D.!!$F2 776
16 TraesCS3D01G351700 chrUn 248128717 248129338 621 False 859.0 859 91.5870 1168 1793 1 chrUn.!!$F1 625
17 TraesCS3D01G351700 chr1A 551827757 551828552 795 False 359.5 521 93.8145 1168 1796 2 chr1A.!!$F1 628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
757 765 0.033228 CAGATGCAGAGTCCGGGATC 59.967 60.0 0.0 0.0 36.04 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2661 3066 0.036952 CGTCATGGAAGGCACTCTGT 60.037 55.0 0.0 0.0 38.49 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 2.485122 GGTGAAAATCGCGCCTGG 59.515 61.111 0.00 0.00 33.20 4.45
114 115 0.179070 GTTCCCTTCTCGAGGCATCC 60.179 60.000 13.56 0.00 44.85 3.51
130 131 3.414700 CCTCGTTGCAGGTCACGC 61.415 66.667 3.79 0.00 0.00 5.34
218 221 0.317479 CTTCGGTGTCGTTCTCCCTT 59.683 55.000 0.00 0.00 37.69 3.95
428 432 1.221840 CGGGCAAGGTAGATGCAGT 59.778 57.895 0.00 0.00 45.60 4.40
429 433 0.392998 CGGGCAAGGTAGATGCAGTT 60.393 55.000 0.00 0.00 45.60 3.16
458 462 1.747355 CTGAAGATGGATTGGTGGCAC 59.253 52.381 9.70 9.70 0.00 5.01
515 519 3.138798 GAGGAGCACGCCGGACTA 61.139 66.667 5.05 0.00 0.00 2.59
570 575 4.020218 TGGGACCTCAAGTCTTAGATGTTG 60.020 45.833 0.00 2.09 45.54 3.33
616 621 3.847671 ATTAGGCCTAGACTTTCAGCC 57.152 47.619 13.36 0.00 44.20 4.85
671 679 2.088950 TGCTTAGACGGTGGCTTTAC 57.911 50.000 0.00 0.00 0.00 2.01
752 760 1.226802 CGTCCAGATGCAGAGTCCG 60.227 63.158 0.00 0.00 0.00 4.79
753 761 1.142748 GTCCAGATGCAGAGTCCGG 59.857 63.158 0.00 0.00 0.00 5.14
754 762 2.060383 TCCAGATGCAGAGTCCGGG 61.060 63.158 0.00 0.00 0.00 5.73
755 763 2.060383 CCAGATGCAGAGTCCGGGA 61.060 63.158 0.00 0.00 0.00 5.14
756 764 1.406065 CCAGATGCAGAGTCCGGGAT 61.406 60.000 0.00 0.00 0.00 3.85
757 765 0.033228 CAGATGCAGAGTCCGGGATC 59.967 60.000 0.00 0.00 36.04 3.36
758 766 0.105760 AGATGCAGAGTCCGGGATCT 60.106 55.000 0.00 9.69 39.84 2.75
759 767 0.755686 GATGCAGAGTCCGGGATCTT 59.244 55.000 0.00 0.00 33.81 2.40
760 768 0.755686 ATGCAGAGTCCGGGATCTTC 59.244 55.000 0.00 0.13 0.00 2.87
761 769 1.330655 TGCAGAGTCCGGGATCTTCC 61.331 60.000 0.00 0.00 35.23 3.46
762 770 1.045911 GCAGAGTCCGGGATCTTCCT 61.046 60.000 0.00 0.00 36.57 3.36
763 771 1.036707 CAGAGTCCGGGATCTTCCTC 58.963 60.000 0.00 1.43 36.57 3.71
764 772 0.105913 AGAGTCCGGGATCTTCCTCC 60.106 60.000 0.00 0.00 36.57 4.30
765 773 0.105913 GAGTCCGGGATCTTCCTCCT 60.106 60.000 0.00 0.00 36.57 3.69
766 774 0.340208 AGTCCGGGATCTTCCTCCTT 59.660 55.000 0.00 0.00 36.57 3.36
767 775 1.205055 GTCCGGGATCTTCCTCCTTT 58.795 55.000 0.00 0.00 36.57 3.11
768 776 2.023307 AGTCCGGGATCTTCCTCCTTTA 60.023 50.000 0.00 0.00 36.57 1.85
769 777 2.770232 GTCCGGGATCTTCCTCCTTTAA 59.230 50.000 0.00 0.00 36.57 1.52
770 778 3.199289 GTCCGGGATCTTCCTCCTTTAAA 59.801 47.826 0.00 0.00 36.57 1.52
771 779 3.847780 TCCGGGATCTTCCTCCTTTAAAA 59.152 43.478 0.00 0.00 36.57 1.52
772 780 4.290196 TCCGGGATCTTCCTCCTTTAAAAA 59.710 41.667 0.00 0.00 36.57 1.94
795 803 5.906772 AAAACTCCTCCAGAAGTTTCCTA 57.093 39.130 1.39 0.00 33.94 2.94
938 954 0.321122 CTCTCACTTGGCACCACTCC 60.321 60.000 0.00 0.00 0.00 3.85
980 1023 0.249238 CCAAGTAGCTAGCGCTCAGG 60.249 60.000 16.34 6.92 45.15 3.86
997 1059 2.308722 GGATTCAGGGAGCCCACCA 61.309 63.158 8.53 0.00 38.92 4.17
1049 1111 2.279073 CACCCTCCTCCCGAGCTA 59.721 66.667 0.00 0.00 37.27 3.32
1071 1133 2.492090 CTCCTCCTCGCCGACTTG 59.508 66.667 0.00 0.00 0.00 3.16
1086 1148 3.704231 CTTGGCCCCGATGACCCTG 62.704 68.421 0.00 0.00 0.00 4.45
1428 1500 3.056328 GGCTTCAACGTGGGCCTC 61.056 66.667 4.53 0.00 41.20 4.70
1431 1503 1.376037 CTTCAACGTGGGCCTCTCC 60.376 63.158 4.53 0.00 0.00 3.71
1852 2116 1.734117 TGCAGTGCGTGTCATCTCG 60.734 57.895 11.20 0.00 0.00 4.04
1905 2169 1.834856 TTGGAGACTGCCAGGCTGAG 61.835 60.000 24.37 11.26 30.20 3.35
1929 2193 1.687123 AGTGCTTGGAGTAGTTCGTGT 59.313 47.619 0.00 0.00 0.00 4.49
1998 2262 6.580963 CAGATTCCAGTCTGAAATAACGAG 57.419 41.667 0.00 0.00 46.77 4.18
1999 2263 5.006165 CAGATTCCAGTCTGAAATAACGAGC 59.994 44.000 0.00 0.00 46.77 5.03
2000 2264 3.953712 TCCAGTCTGAAATAACGAGCA 57.046 42.857 0.00 0.00 0.00 4.26
2001 2265 4.471904 TCCAGTCTGAAATAACGAGCAT 57.528 40.909 0.00 0.00 0.00 3.79
2002 2266 4.183865 TCCAGTCTGAAATAACGAGCATG 58.816 43.478 0.00 0.00 0.00 4.06
2003 2267 4.081697 TCCAGTCTGAAATAACGAGCATGA 60.082 41.667 0.00 0.00 0.00 3.07
2004 2268 4.813161 CCAGTCTGAAATAACGAGCATGAT 59.187 41.667 0.00 0.00 0.00 2.45
2005 2269 5.295292 CCAGTCTGAAATAACGAGCATGATT 59.705 40.000 0.00 0.00 0.00 2.57
2006 2270 6.190264 CAGTCTGAAATAACGAGCATGATTG 58.810 40.000 0.00 0.00 0.00 2.67
2007 2271 5.295292 AGTCTGAAATAACGAGCATGATTGG 59.705 40.000 2.72 0.00 0.00 3.16
2008 2272 5.065218 GTCTGAAATAACGAGCATGATTGGT 59.935 40.000 2.72 0.00 35.95 3.67
2009 2273 5.647658 TCTGAAATAACGAGCATGATTGGTT 59.352 36.000 2.72 4.99 32.62 3.67
2010 2274 6.150976 TCTGAAATAACGAGCATGATTGGTTT 59.849 34.615 2.72 1.15 32.62 3.27
2011 2275 6.092092 TGAAATAACGAGCATGATTGGTTTG 58.908 36.000 2.72 0.00 32.62 2.93
2012 2276 5.895636 AATAACGAGCATGATTGGTTTGA 57.104 34.783 2.72 0.00 32.62 2.69
2013 2277 6.455360 AATAACGAGCATGATTGGTTTGAT 57.545 33.333 2.72 0.00 32.62 2.57
2014 2278 3.770263 ACGAGCATGATTGGTTTGATG 57.230 42.857 2.72 0.00 32.62 3.07
2015 2279 2.159338 ACGAGCATGATTGGTTTGATGC 60.159 45.455 2.72 0.00 41.29 3.91
2016 2280 2.797087 CGAGCATGATTGGTTTGATGCC 60.797 50.000 0.00 0.00 41.81 4.40
2017 2281 2.166870 GAGCATGATTGGTTTGATGCCA 59.833 45.455 0.00 0.00 41.81 4.92
2039 2303 6.833839 CCAAAAGTTGGCATGTCAATATTTG 58.166 36.000 28.54 28.54 45.17 2.32
2040 2304 6.128227 CCAAAAGTTGGCATGTCAATATTTGG 60.128 38.462 33.91 33.91 45.17 3.28
2041 2305 4.127566 AGTTGGCATGTCAATATTTGGC 57.872 40.909 17.07 0.98 35.37 4.52
2062 2326 4.559153 GCAAATGCCAAATGTTGTCTAGT 58.441 39.130 0.00 0.00 34.31 2.57
2063 2327 4.386652 GCAAATGCCAAATGTTGTCTAGTG 59.613 41.667 0.00 0.00 34.31 2.74
2064 2328 5.771469 CAAATGCCAAATGTTGTCTAGTGA 58.229 37.500 0.00 0.00 0.00 3.41
2065 2329 6.392354 CAAATGCCAAATGTTGTCTAGTGAT 58.608 36.000 0.00 0.00 0.00 3.06
2066 2330 6.594788 AATGCCAAATGTTGTCTAGTGATT 57.405 33.333 0.00 0.00 0.00 2.57
2067 2331 5.375417 TGCCAAATGTTGTCTAGTGATTG 57.625 39.130 0.00 0.00 0.00 2.67
2068 2332 4.218200 TGCCAAATGTTGTCTAGTGATTGG 59.782 41.667 0.00 0.00 39.20 3.16
2069 2333 4.218417 GCCAAATGTTGTCTAGTGATTGGT 59.782 41.667 0.00 0.00 38.60 3.67
2070 2334 5.278957 GCCAAATGTTGTCTAGTGATTGGTT 60.279 40.000 0.00 0.00 38.60 3.67
2071 2335 6.151691 CCAAATGTTGTCTAGTGATTGGTTG 58.848 40.000 0.00 0.00 33.18 3.77
2072 2336 5.964958 AATGTTGTCTAGTGATTGGTTGG 57.035 39.130 0.00 0.00 0.00 3.77
2073 2337 3.146066 TGTTGTCTAGTGATTGGTTGGC 58.854 45.455 0.00 0.00 0.00 4.52
2074 2338 3.181445 TGTTGTCTAGTGATTGGTTGGCT 60.181 43.478 0.00 0.00 0.00 4.75
2075 2339 4.041075 TGTTGTCTAGTGATTGGTTGGCTA 59.959 41.667 0.00 0.00 0.00 3.93
2076 2340 4.202245 TGTCTAGTGATTGGTTGGCTAC 57.798 45.455 0.00 0.00 0.00 3.58
2086 2350 2.287977 GGTTGGCTACCACCTTTTCT 57.712 50.000 13.41 0.00 46.92 2.52
2087 2351 2.594131 GGTTGGCTACCACCTTTTCTT 58.406 47.619 13.41 0.00 46.92 2.52
2088 2352 2.557056 GGTTGGCTACCACCTTTTCTTC 59.443 50.000 13.41 0.00 46.92 2.87
2089 2353 3.487372 GTTGGCTACCACCTTTTCTTCT 58.513 45.455 0.00 0.00 30.78 2.85
2090 2354 3.418684 TGGCTACCACCTTTTCTTCTC 57.581 47.619 0.00 0.00 0.00 2.87
2091 2355 2.708861 TGGCTACCACCTTTTCTTCTCA 59.291 45.455 0.00 0.00 0.00 3.27
2092 2356 3.137544 TGGCTACCACCTTTTCTTCTCAA 59.862 43.478 0.00 0.00 0.00 3.02
2093 2357 3.502595 GGCTACCACCTTTTCTTCTCAAC 59.497 47.826 0.00 0.00 0.00 3.18
2094 2358 3.502595 GCTACCACCTTTTCTTCTCAACC 59.497 47.826 0.00 0.00 0.00 3.77
2095 2359 3.953542 ACCACCTTTTCTTCTCAACCT 57.046 42.857 0.00 0.00 0.00 3.50
2096 2360 3.821748 ACCACCTTTTCTTCTCAACCTC 58.178 45.455 0.00 0.00 0.00 3.85
2097 2361 3.202151 ACCACCTTTTCTTCTCAACCTCA 59.798 43.478 0.00 0.00 0.00 3.86
2098 2362 3.565902 CCACCTTTTCTTCTCAACCTCAC 59.434 47.826 0.00 0.00 0.00 3.51
2099 2363 4.199310 CACCTTTTCTTCTCAACCTCACA 58.801 43.478 0.00 0.00 0.00 3.58
2100 2364 4.640201 CACCTTTTCTTCTCAACCTCACAA 59.360 41.667 0.00 0.00 0.00 3.33
2101 2365 5.125417 CACCTTTTCTTCTCAACCTCACAAA 59.875 40.000 0.00 0.00 0.00 2.83
2102 2366 5.714806 ACCTTTTCTTCTCAACCTCACAAAA 59.285 36.000 0.00 0.00 0.00 2.44
2103 2367 6.210584 ACCTTTTCTTCTCAACCTCACAAAAA 59.789 34.615 0.00 0.00 0.00 1.94
2104 2368 6.753744 CCTTTTCTTCTCAACCTCACAAAAAG 59.246 38.462 0.00 0.00 33.28 2.27
2105 2369 6.834168 TTTCTTCTCAACCTCACAAAAAGT 57.166 33.333 0.00 0.00 0.00 2.66
2106 2370 6.834168 TTCTTCTCAACCTCACAAAAAGTT 57.166 33.333 0.00 0.00 0.00 2.66
2107 2371 6.194796 TCTTCTCAACCTCACAAAAAGTTG 57.805 37.500 0.00 0.00 40.72 3.16
2108 2372 4.370364 TCTCAACCTCACAAAAAGTTGC 57.630 40.909 0.00 0.00 39.51 4.17
2109 2373 3.130340 TCTCAACCTCACAAAAAGTTGCC 59.870 43.478 0.00 0.00 39.51 4.52
2110 2374 2.828520 TCAACCTCACAAAAAGTTGCCA 59.171 40.909 0.00 0.00 39.51 4.92
2111 2375 3.259374 TCAACCTCACAAAAAGTTGCCAA 59.741 39.130 0.00 0.00 39.51 4.52
2112 2376 3.245518 ACCTCACAAAAAGTTGCCAAC 57.754 42.857 0.00 0.00 38.39 3.77
2113 2377 2.564947 ACCTCACAAAAAGTTGCCAACA 59.435 40.909 10.69 0.00 38.39 3.33
2114 2378 3.197549 ACCTCACAAAAAGTTGCCAACAT 59.802 39.130 10.69 0.00 38.39 2.71
2115 2379 4.190772 CCTCACAAAAAGTTGCCAACATT 58.809 39.130 10.69 0.60 38.39 2.71
2116 2380 4.635324 CCTCACAAAAAGTTGCCAACATTT 59.365 37.500 10.69 7.67 38.39 2.32
2117 2381 5.447548 CCTCACAAAAAGTTGCCAACATTTG 60.448 40.000 24.88 24.88 41.84 2.32
2131 2395 6.563222 CCAACATTTGGCAAATTCTGATTT 57.437 33.333 22.26 6.76 45.17 2.17
2132 2396 6.972722 CCAACATTTGGCAAATTCTGATTTT 58.027 32.000 22.26 2.23 45.17 1.82
2133 2397 6.858993 CCAACATTTGGCAAATTCTGATTTTG 59.141 34.615 22.26 16.64 45.17 2.44
2134 2398 6.004408 ACATTTGGCAAATTCTGATTTTGC 57.996 33.333 28.57 28.57 33.25 3.68
2135 2399 5.048573 ACATTTGGCAAATTCTGATTTTGCC 60.049 36.000 37.68 37.68 42.87 4.52
2136 2400 3.766068 TGGCAAATTCTGATTTTGCCA 57.234 38.095 40.36 40.36 45.88 4.92
2137 2401 4.082665 TGGCAAATTCTGATTTTGCCAA 57.917 36.364 41.08 31.55 45.54 4.52
2138 2402 4.458397 TGGCAAATTCTGATTTTGCCAAA 58.542 34.783 41.08 30.07 45.54 3.28
2139 2403 5.071370 TGGCAAATTCTGATTTTGCCAAAT 58.929 33.333 41.08 7.80 45.54 2.32
2140 2404 5.048643 TGGCAAATTCTGATTTTGCCAAATG 60.049 36.000 41.08 16.42 45.54 2.32
2141 2405 5.048573 GGCAAATTCTGATTTTGCCAAATGT 60.049 36.000 38.44 1.61 42.53 2.71
2142 2406 6.440436 GCAAATTCTGATTTTGCCAAATGTT 58.560 32.000 27.25 0.00 33.25 2.71
2143 2407 6.361214 GCAAATTCTGATTTTGCCAAATGTTG 59.639 34.615 27.25 4.60 33.25 3.33
2144 2408 6.858993 CAAATTCTGATTTTGCCAAATGTTGG 59.141 34.615 10.88 2.50 42.35 3.77
2152 2416 3.702147 CCAAATGTTGGCTTGCCAA 57.298 47.368 21.59 21.59 45.17 4.52
2153 2417 1.964552 CCAAATGTTGGCTTGCCAAA 58.035 45.000 26.12 17.09 45.17 3.28
2154 2418 2.506444 CCAAATGTTGGCTTGCCAAAT 58.494 42.857 26.12 18.32 45.17 2.32
2155 2419 3.672808 CCAAATGTTGGCTTGCCAAATA 58.327 40.909 26.12 18.73 45.17 1.40
2156 2420 4.263435 CCAAATGTTGGCTTGCCAAATAT 58.737 39.130 26.12 19.92 45.17 1.28
2157 2421 4.701171 CCAAATGTTGGCTTGCCAAATATT 59.299 37.500 26.12 23.52 45.17 1.28
2158 2422 5.392165 CCAAATGTTGGCTTGCCAAATATTG 60.392 40.000 26.12 25.13 45.17 1.90
2185 2449 3.123157 CCAATTGTTGGCATCAAACCA 57.877 42.857 14.40 0.00 45.17 3.67
2186 2450 3.474600 CCAATTGTTGGCATCAAACCAA 58.525 40.909 14.40 0.00 45.17 3.67
2195 2459 5.735285 TGGCATCAAACCAATTATGTTCA 57.265 34.783 0.00 0.00 33.12 3.18
2196 2460 6.106648 TGGCATCAAACCAATTATGTTCAA 57.893 33.333 0.00 0.00 33.12 2.69
2197 2461 5.931146 TGGCATCAAACCAATTATGTTCAAC 59.069 36.000 0.00 0.00 33.12 3.18
2207 2471 9.691362 AACCAATTATGTTCAACATGTTTAGAC 57.309 29.630 13.65 8.40 39.53 2.59
2210 2474 7.915293 ATTATGTTCAACATGTTTAGACGGA 57.085 32.000 13.65 0.00 39.53 4.69
2219 2483 4.566759 ACATGTTTAGACGGACATTGATCG 59.433 41.667 0.00 0.00 34.42 3.69
2220 2484 4.443913 TGTTTAGACGGACATTGATCGA 57.556 40.909 9.50 0.00 0.00 3.59
2221 2485 4.171005 TGTTTAGACGGACATTGATCGAC 58.829 43.478 9.50 4.74 0.00 4.20
2222 2486 3.431922 TTAGACGGACATTGATCGACC 57.568 47.619 9.50 0.00 0.00 4.79
2230 2507 4.662145 GGACATTGATCGACCATGTTTTC 58.338 43.478 7.24 0.00 0.00 2.29
2231 2508 4.334443 GACATTGATCGACCATGTTTTCG 58.666 43.478 7.24 2.96 36.55 3.46
2232 2509 3.126858 ACATTGATCGACCATGTTTTCGG 59.873 43.478 8.30 0.00 35.89 4.30
2233 2510 1.083489 TGATCGACCATGTTTTCGGC 58.917 50.000 8.30 3.42 35.89 5.54
2241 2518 1.613437 CCATGTTTTCGGCCACTTCTT 59.387 47.619 2.24 0.00 0.00 2.52
2242 2519 2.817258 CCATGTTTTCGGCCACTTCTTA 59.183 45.455 2.24 0.00 0.00 2.10
2256 2534 5.693814 CCACTTCTTATGTGCTTTGAGTTC 58.306 41.667 0.00 0.00 34.38 3.01
2259 2537 6.634436 CACTTCTTATGTGCTTTGAGTTCAAC 59.366 38.462 0.00 0.00 35.28 3.18
2266 2544 5.189928 TGTGCTTTGAGTTCAACTCCTTTA 58.810 37.500 15.20 0.00 44.44 1.85
2267 2545 5.650266 TGTGCTTTGAGTTCAACTCCTTTAA 59.350 36.000 15.20 0.00 44.44 1.52
2268 2546 6.321181 TGTGCTTTGAGTTCAACTCCTTTAAT 59.679 34.615 15.20 0.00 44.44 1.40
2269 2547 7.147915 TGTGCTTTGAGTTCAACTCCTTTAATT 60.148 33.333 15.20 0.00 44.44 1.40
2270 2548 7.706607 GTGCTTTGAGTTCAACTCCTTTAATTT 59.293 33.333 15.20 0.00 44.44 1.82
2271 2549 8.257306 TGCTTTGAGTTCAACTCCTTTAATTTT 58.743 29.630 15.20 0.00 44.44 1.82
2272 2550 8.755941 GCTTTGAGTTCAACTCCTTTAATTTTC 58.244 33.333 15.20 0.00 44.44 2.29
2273 2551 9.249457 CTTTGAGTTCAACTCCTTTAATTTTCC 57.751 33.333 15.20 0.00 44.44 3.13
2274 2552 7.284919 TGAGTTCAACTCCTTTAATTTTCCC 57.715 36.000 15.20 0.00 44.44 3.97
2276 2554 7.230712 TGAGTTCAACTCCTTTAATTTTCCCTC 59.769 37.037 15.20 0.00 44.44 4.30
2301 2611 1.460504 ACATGTGCAAGGCAGATCTG 58.539 50.000 18.84 18.84 40.55 2.90
2313 2623 2.212869 CAGATCTGCTGCTCTCACTC 57.787 55.000 10.38 0.00 37.90 3.51
2314 2624 1.113788 AGATCTGCTGCTCTCACTCC 58.886 55.000 0.00 0.00 0.00 3.85
2315 2625 0.822811 GATCTGCTGCTCTCACTCCA 59.177 55.000 0.00 0.00 0.00 3.86
2317 2627 0.541530 TCTGCTGCTCTCACTCCACT 60.542 55.000 0.00 0.00 0.00 4.00
2318 2628 0.390078 CTGCTGCTCTCACTCCACTG 60.390 60.000 0.00 0.00 0.00 3.66
2319 2629 1.741032 GCTGCTCTCACTCCACTGC 60.741 63.158 0.00 0.00 0.00 4.40
2320 2630 1.973760 CTGCTCTCACTCCACTGCT 59.026 57.895 0.00 0.00 0.00 4.24
2322 2632 0.541530 TGCTCTCACTCCACTGCTCT 60.542 55.000 0.00 0.00 0.00 4.09
2323 2633 0.108709 GCTCTCACTCCACTGCTCTG 60.109 60.000 0.00 0.00 0.00 3.35
2324 2634 0.108709 CTCTCACTCCACTGCTCTGC 60.109 60.000 0.00 0.00 0.00 4.26
2325 2635 0.829182 TCTCACTCCACTGCTCTGCA 60.829 55.000 0.00 0.00 36.92 4.41
2327 2637 1.070275 CACTCCACTGCTCTGCACA 59.930 57.895 0.00 0.00 33.79 4.57
2328 2638 0.949588 CACTCCACTGCTCTGCACAG 60.950 60.000 1.47 1.47 41.08 3.66
2329 2639 2.031616 TCCACTGCTCTGCACAGC 59.968 61.111 7.06 7.06 38.79 4.40
2358 2715 0.035739 TACGGGGCTGAACTTGAACC 59.964 55.000 0.00 0.00 0.00 3.62
2362 2719 1.534729 GGGCTGAACTTGAACCGAAT 58.465 50.000 0.00 0.00 0.00 3.34
2363 2720 1.886542 GGGCTGAACTTGAACCGAATT 59.113 47.619 0.00 0.00 0.00 2.17
2364 2721 2.296190 GGGCTGAACTTGAACCGAATTT 59.704 45.455 0.00 0.00 0.00 1.82
2366 2723 3.004315 GGCTGAACTTGAACCGAATTTGA 59.996 43.478 0.00 0.00 0.00 2.69
2367 2724 4.321230 GGCTGAACTTGAACCGAATTTGAT 60.321 41.667 0.00 0.00 0.00 2.57
2368 2725 4.618489 GCTGAACTTGAACCGAATTTGATG 59.382 41.667 0.00 0.00 0.00 3.07
2373 2778 6.331369 ACTTGAACCGAATTTGATGTCAAT 57.669 33.333 0.00 0.00 35.55 2.57
2390 2795 3.193267 GTCAATAAGCCAAGCCATGAACA 59.807 43.478 0.00 0.00 0.00 3.18
2391 2796 3.831333 TCAATAAGCCAAGCCATGAACAA 59.169 39.130 0.00 0.00 0.00 2.83
2393 2798 2.754946 AAGCCAAGCCATGAACAATG 57.245 45.000 0.00 0.00 35.89 2.82
2395 2800 0.741927 GCCAAGCCATGAACAATGCC 60.742 55.000 0.00 0.00 34.67 4.40
2396 2801 0.108041 CCAAGCCATGAACAATGCCC 60.108 55.000 0.00 0.00 34.67 5.36
2397 2802 0.108041 CAAGCCATGAACAATGCCCC 60.108 55.000 0.00 0.00 34.67 5.80
2398 2803 0.252375 AAGCCATGAACAATGCCCCT 60.252 50.000 0.00 0.00 34.67 4.79
2399 2804 0.974010 AGCCATGAACAATGCCCCTG 60.974 55.000 0.00 0.00 34.67 4.45
2400 2805 1.963464 GCCATGAACAATGCCCCTGG 61.963 60.000 0.00 0.00 34.67 4.45
2419 2824 0.040246 GCTCTCGAGTACCGCATACC 60.040 60.000 13.13 0.00 38.37 2.73
2451 2856 2.538737 CGATGTCTCTCGTCTCTGCTTC 60.539 54.545 0.00 0.00 34.00 3.86
2453 2858 1.809547 TGTCTCTCGTCTCTGCTTCTG 59.190 52.381 0.00 0.00 0.00 3.02
2456 2861 0.884514 TCTCGTCTCTGCTTCTGGTG 59.115 55.000 0.00 0.00 0.00 4.17
2468 2873 1.125093 TTCTGGTGACCGGTGTCCAT 61.125 55.000 22.43 0.00 41.01 3.41
2472 2877 2.047655 TGACCGGTGTCCATTCGC 60.048 61.111 14.63 0.00 41.01 4.70
2497 2902 5.240403 CCCTTTCTCCTTTCAGTTTTCTCTG 59.760 44.000 0.00 0.00 36.85 3.35
2523 2928 1.566018 GGCCGTGTCCTTTTCGTCAG 61.566 60.000 0.00 0.00 0.00 3.51
2530 2935 2.003301 GTCCTTTTCGTCAGATCCTGC 58.997 52.381 0.00 0.00 0.00 4.85
2544 2949 0.674581 TCCTGCGATTGGCTTGTCTG 60.675 55.000 0.00 0.00 44.05 3.51
2610 3015 0.179097 CTGAGGTTAGGAGCGGCTTC 60.179 60.000 2.97 0.48 0.00 3.86
2622 3027 2.806244 GAGCGGCTTCTCAGTAAAAACA 59.194 45.455 2.97 0.00 33.41 2.83
2625 3030 5.001232 AGCGGCTTCTCAGTAAAAACATAA 58.999 37.500 0.00 0.00 0.00 1.90
2628 3033 5.122396 CGGCTTCTCAGTAAAAACATAAGCT 59.878 40.000 0.00 0.00 38.46 3.74
2629 3034 6.547283 GGCTTCTCAGTAAAAACATAAGCTC 58.453 40.000 0.00 0.00 38.46 4.09
2630 3035 6.244275 GCTTCTCAGTAAAAACATAAGCTCG 58.756 40.000 0.00 0.00 36.16 5.03
2631 3036 6.128526 GCTTCTCAGTAAAAACATAAGCTCGT 60.129 38.462 0.00 0.00 36.16 4.18
2632 3037 7.571428 GCTTCTCAGTAAAAACATAAGCTCGTT 60.571 37.037 0.00 0.00 36.16 3.85
2633 3038 8.821147 TTCTCAGTAAAAACATAAGCTCGTTA 57.179 30.769 0.00 0.00 0.00 3.18
2634 3039 8.462143 TCTCAGTAAAAACATAAGCTCGTTAG 57.538 34.615 0.00 0.00 0.00 2.34
2635 3040 8.086522 TCTCAGTAAAAACATAAGCTCGTTAGT 58.913 33.333 0.00 0.00 0.00 2.24
2636 3041 8.597662 TCAGTAAAAACATAAGCTCGTTAGTT 57.402 30.769 0.00 0.00 0.00 2.24
2637 3042 9.048446 TCAGTAAAAACATAAGCTCGTTAGTTT 57.952 29.630 0.00 0.00 0.00 2.66
2638 3043 9.103048 CAGTAAAAACATAAGCTCGTTAGTTTG 57.897 33.333 0.00 0.00 29.68 2.93
2639 3044 8.833493 AGTAAAAACATAAGCTCGTTAGTTTGT 58.167 29.630 0.00 0.00 29.68 2.83
2640 3045 9.442033 GTAAAAACATAAGCTCGTTAGTTTGTT 57.558 29.630 0.00 0.00 29.68 2.83
2641 3046 8.920509 AAAAACATAAGCTCGTTAGTTTGTTT 57.079 26.923 0.00 0.00 29.29 2.83
2642 3047 8.920509 AAAACATAAGCTCGTTAGTTTGTTTT 57.079 26.923 8.44 8.44 32.32 2.43
2643 3048 8.556517 AAACATAAGCTCGTTAGTTTGTTTTC 57.443 30.769 0.00 0.00 25.79 2.29
2644 3049 7.492352 ACATAAGCTCGTTAGTTTGTTTTCT 57.508 32.000 0.00 0.00 0.00 2.52
2645 3050 8.597662 ACATAAGCTCGTTAGTTTGTTTTCTA 57.402 30.769 0.00 0.00 0.00 2.10
2646 3051 8.493547 ACATAAGCTCGTTAGTTTGTTTTCTAC 58.506 33.333 0.00 0.00 0.00 2.59
2647 3052 8.709646 CATAAGCTCGTTAGTTTGTTTTCTACT 58.290 33.333 0.00 0.00 0.00 2.57
2648 3053 6.766452 AGCTCGTTAGTTTGTTTTCTACTC 57.234 37.500 0.00 0.00 0.00 2.59
2649 3054 6.514063 AGCTCGTTAGTTTGTTTTCTACTCT 58.486 36.000 0.00 0.00 0.00 3.24
2650 3055 7.655490 AGCTCGTTAGTTTGTTTTCTACTCTA 58.345 34.615 0.00 0.00 0.00 2.43
2651 3056 7.594386 AGCTCGTTAGTTTGTTTTCTACTCTAC 59.406 37.037 0.00 0.00 0.00 2.59
2652 3057 7.409132 GCTCGTTAGTTTGTTTTCTACTCTACG 60.409 40.741 0.00 0.00 0.00 3.51
2653 3058 7.417612 TCGTTAGTTTGTTTTCTACTCTACGT 58.582 34.615 0.00 0.00 0.00 3.57
2654 3059 7.376866 TCGTTAGTTTGTTTTCTACTCTACGTG 59.623 37.037 0.00 0.00 0.00 4.49
2655 3060 7.376866 CGTTAGTTTGTTTTCTACTCTACGTGA 59.623 37.037 0.00 0.00 0.00 4.35
2656 3061 9.023967 GTTAGTTTGTTTTCTACTCTACGTGAA 57.976 33.333 0.00 0.00 0.00 3.18
2657 3062 9.585099 TTAGTTTGTTTTCTACTCTACGTGAAA 57.415 29.630 0.00 0.00 0.00 2.69
2658 3063 8.658499 AGTTTGTTTTCTACTCTACGTGAAAT 57.342 30.769 0.00 0.00 0.00 2.17
2659 3064 9.754382 AGTTTGTTTTCTACTCTACGTGAAATA 57.246 29.630 0.00 0.00 0.00 1.40
2663 3068 9.531942 TGTTTTCTACTCTACGTGAAATAAACA 57.468 29.630 0.00 2.50 0.00 2.83
2665 3070 9.970395 TTTTCTACTCTACGTGAAATAAACAGA 57.030 29.630 0.00 0.00 0.00 3.41
2666 3071 9.622004 TTTCTACTCTACGTGAAATAAACAGAG 57.378 33.333 0.00 1.01 35.33 3.35
2667 3072 8.332996 TCTACTCTACGTGAAATAAACAGAGT 57.667 34.615 14.31 14.31 42.73 3.24
2668 3073 8.235226 TCTACTCTACGTGAAATAAACAGAGTG 58.765 37.037 17.76 10.34 40.92 3.51
2669 3074 5.634020 ACTCTACGTGAAATAAACAGAGTGC 59.366 40.000 10.25 0.00 39.69 4.40
2670 3075 4.927425 TCTACGTGAAATAAACAGAGTGCC 59.073 41.667 0.00 0.00 0.00 5.01
2671 3076 3.740115 ACGTGAAATAAACAGAGTGCCT 58.260 40.909 0.00 0.00 0.00 4.75
2672 3077 4.134563 ACGTGAAATAAACAGAGTGCCTT 58.865 39.130 0.00 0.00 0.00 4.35
2673 3078 4.213482 ACGTGAAATAAACAGAGTGCCTTC 59.787 41.667 0.00 0.00 0.00 3.46
2674 3079 4.378459 CGTGAAATAAACAGAGTGCCTTCC 60.378 45.833 0.00 0.00 0.00 3.46
2675 3080 4.518970 GTGAAATAAACAGAGTGCCTTCCA 59.481 41.667 0.00 0.00 0.00 3.53
2676 3081 5.183904 GTGAAATAAACAGAGTGCCTTCCAT 59.816 40.000 0.00 0.00 0.00 3.41
2677 3082 5.183713 TGAAATAAACAGAGTGCCTTCCATG 59.816 40.000 0.00 0.00 0.00 3.66
2678 3083 2.957402 AAACAGAGTGCCTTCCATGA 57.043 45.000 0.00 0.00 0.00 3.07
2679 3084 2.191128 AACAGAGTGCCTTCCATGAC 57.809 50.000 0.00 0.00 0.00 3.06
2680 3085 0.036952 ACAGAGTGCCTTCCATGACG 60.037 55.000 0.00 0.00 0.00 4.35
2681 3086 0.742281 CAGAGTGCCTTCCATGACGG 60.742 60.000 0.00 0.00 0.00 4.79
2682 3087 0.904865 AGAGTGCCTTCCATGACGGA 60.905 55.000 0.00 0.00 44.40 4.69
2703 3108 8.964476 ACGGAGTAAATCACATCAGAAATATT 57.036 30.769 0.00 0.00 41.94 1.28
2704 3109 9.396022 ACGGAGTAAATCACATCAGAAATATTT 57.604 29.630 0.00 0.00 41.94 1.40
2743 3148 7.672122 GGGGGTTCTAATACTAGAGAAAAGA 57.328 40.000 0.00 0.00 35.55 2.52
2744 3149 8.087303 GGGGGTTCTAATACTAGAGAAAAGAA 57.913 38.462 0.00 0.00 35.55 2.52
2745 3150 8.715842 GGGGGTTCTAATACTAGAGAAAAGAAT 58.284 37.037 0.00 0.00 35.55 2.40
2746 3151 9.767228 GGGGTTCTAATACTAGAGAAAAGAATC 57.233 37.037 0.00 0.00 35.55 2.52
2747 3152 9.465985 GGGTTCTAATACTAGAGAAAAGAATCG 57.534 37.037 0.00 0.00 35.55 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 3.414700 GGCGTGACCTGCAACGAG 61.415 66.667 12.60 0.00 34.51 4.18
130 131 1.679032 GGAACTTCCCGATCAGGTTGG 60.679 57.143 0.00 0.00 38.74 3.77
218 221 2.196997 CTCCAAACGATGCCCCCAGA 62.197 60.000 0.00 0.00 0.00 3.86
251 255 1.621672 GCTCCTCCTCTTGTCCCCTG 61.622 65.000 0.00 0.00 0.00 4.45
428 432 5.939883 CCAATCCATCTTCAGAGTTGTACAA 59.060 40.000 3.59 3.59 0.00 2.41
429 433 5.013079 ACCAATCCATCTTCAGAGTTGTACA 59.987 40.000 0.00 0.00 0.00 2.90
472 476 3.536917 CGCCTGCCGGGTATGAGA 61.537 66.667 2.18 0.00 37.43 3.27
570 575 1.531602 AGACCTTGCAGCCAAACCC 60.532 57.895 0.00 0.00 0.00 4.11
616 621 2.580783 TCCTATCCAGTTGAAAAGGGGG 59.419 50.000 0.00 0.00 33.18 5.40
623 628 3.380637 GTCGCTACTCCTATCCAGTTGAA 59.619 47.826 0.00 0.00 0.00 2.69
671 679 8.926710 CCTTACAAAGTCATACAACAGTAAGAG 58.073 37.037 0.00 0.00 39.45 2.85
749 757 2.860817 TAAAGGAGGAAGATCCCGGA 57.139 50.000 0.73 0.00 40.53 5.14
772 780 5.130705 AGGAAACTTCTGGAGGAGTTTTT 57.869 39.130 13.26 4.26 37.44 1.94
773 781 4.797912 AGGAAACTTCTGGAGGAGTTTT 57.202 40.909 13.26 0.00 37.44 2.43
774 782 4.908481 AGTAGGAAACTTCTGGAGGAGTTT 59.092 41.667 12.11 12.11 43.67 2.66
775 783 4.494591 AGTAGGAAACTTCTGGAGGAGTT 58.505 43.478 0.00 0.00 43.67 3.01
793 801 5.053145 GGATTGAGATAACACAGGCAGTAG 58.947 45.833 0.00 0.00 0.00 2.57
795 803 3.264193 TGGATTGAGATAACACAGGCAGT 59.736 43.478 0.00 0.00 0.00 4.40
869 880 1.683011 GGATTGGACTGGGGTGTGATG 60.683 57.143 0.00 0.00 0.00 3.07
938 954 1.964223 AGTAGACTGTGGACTGTGGTG 59.036 52.381 0.00 0.00 0.00 4.17
969 1010 0.033228 CCCTGAATCCTGAGCGCTAG 59.967 60.000 11.50 8.45 0.00 3.42
970 1011 0.397114 TCCCTGAATCCTGAGCGCTA 60.397 55.000 11.50 0.00 0.00 4.26
971 1012 1.684386 CTCCCTGAATCCTGAGCGCT 61.684 60.000 11.27 11.27 0.00 5.92
972 1013 1.227497 CTCCCTGAATCCTGAGCGC 60.227 63.158 0.00 0.00 0.00 5.92
973 1014 1.227497 GCTCCCTGAATCCTGAGCG 60.227 63.158 0.00 0.00 40.61 5.03
980 1023 1.077429 GTGGTGGGCTCCCTGAATC 60.077 63.158 6.50 0.00 36.94 2.52
1071 1133 4.176752 GTCAGGGTCATCGGGGCC 62.177 72.222 0.00 0.00 0.00 5.80
1086 1148 1.647084 GCAGTTGTTCACCACGGTC 59.353 57.895 0.00 0.00 0.00 4.79
1852 2116 3.055591 CACTCACTCACACATGACAGAC 58.944 50.000 0.00 0.00 0.00 3.51
1905 2169 0.037232 AACTACTCCAAGCACTCCGC 60.037 55.000 0.00 0.00 42.91 5.54
1918 2182 2.095364 CGCCTACAGAACACGAACTACT 60.095 50.000 0.00 0.00 0.00 2.57
1929 2193 1.544691 GAGAGGTGAACGCCTACAGAA 59.455 52.381 6.91 0.00 39.34 3.02
1996 2260 2.166870 TGGCATCAAACCAATCATGCTC 59.833 45.455 2.99 0.00 41.25 4.26
1997 2261 2.181125 TGGCATCAAACCAATCATGCT 58.819 42.857 2.99 0.00 41.25 3.79
1998 2262 2.676632 TGGCATCAAACCAATCATGC 57.323 45.000 0.00 0.00 40.85 4.06
1999 2263 4.998672 ACTTTTGGCATCAAACCAATCATG 59.001 37.500 0.00 0.00 46.25 3.07
2000 2264 5.231702 ACTTTTGGCATCAAACCAATCAT 57.768 34.783 0.00 0.00 46.25 2.45
2001 2265 4.686191 ACTTTTGGCATCAAACCAATCA 57.314 36.364 0.00 0.00 46.25 2.57
2002 2266 4.213906 CCAACTTTTGGCATCAAACCAATC 59.786 41.667 0.00 0.00 46.25 2.67
2003 2267 4.136051 CCAACTTTTGGCATCAAACCAAT 58.864 39.130 0.00 0.00 46.25 3.16
2004 2268 3.539604 CCAACTTTTGGCATCAAACCAA 58.460 40.909 0.00 0.00 45.17 3.67
2005 2269 3.191078 CCAACTTTTGGCATCAAACCA 57.809 42.857 0.00 0.00 45.17 3.67
2016 2280 6.621164 GCCAAATATTGACATGCCAACTTTTG 60.621 38.462 17.25 17.25 34.47 2.44
2017 2281 5.412286 GCCAAATATTGACATGCCAACTTTT 59.588 36.000 0.00 0.00 0.00 2.27
2018 2282 4.937015 GCCAAATATTGACATGCCAACTTT 59.063 37.500 0.00 0.00 0.00 2.66
2019 2283 4.020396 TGCCAAATATTGACATGCCAACTT 60.020 37.500 0.00 0.00 0.00 2.66
2020 2284 3.514706 TGCCAAATATTGACATGCCAACT 59.485 39.130 0.00 0.00 0.00 3.16
2021 2285 3.859443 TGCCAAATATTGACATGCCAAC 58.141 40.909 0.00 0.00 0.00 3.77
2022 2286 4.548451 TTGCCAAATATTGACATGCCAA 57.452 36.364 0.00 0.00 0.00 4.52
2023 2287 4.548451 TTTGCCAAATATTGACATGCCA 57.452 36.364 0.00 0.00 0.00 4.92
2024 2288 4.260866 GCATTTGCCAAATATTGACATGCC 60.261 41.667 1.66 0.00 34.31 4.40
2025 2289 4.839796 GCATTTGCCAAATATTGACATGC 58.160 39.130 1.66 0.00 34.31 4.06
2040 2304 4.386652 CACTAGACAACATTTGGCATTTGC 59.613 41.667 0.00 0.00 42.71 3.68
2041 2305 5.771469 TCACTAGACAACATTTGGCATTTG 58.229 37.500 0.00 0.00 42.71 2.32
2042 2306 6.594788 ATCACTAGACAACATTTGGCATTT 57.405 33.333 0.00 0.00 42.71 2.32
2043 2307 6.392354 CAATCACTAGACAACATTTGGCATT 58.608 36.000 0.00 0.00 42.71 3.56
2044 2308 5.105635 CCAATCACTAGACAACATTTGGCAT 60.106 40.000 0.00 0.00 42.71 4.40
2045 2309 4.218200 CCAATCACTAGACAACATTTGGCA 59.782 41.667 0.00 0.00 42.71 4.92
2046 2310 4.218417 ACCAATCACTAGACAACATTTGGC 59.782 41.667 0.00 0.00 39.66 4.52
2047 2311 5.964958 ACCAATCACTAGACAACATTTGG 57.035 39.130 0.00 2.69 38.61 3.28
2048 2312 6.151691 CCAACCAATCACTAGACAACATTTG 58.848 40.000 0.00 0.00 0.00 2.32
2049 2313 5.278957 GCCAACCAATCACTAGACAACATTT 60.279 40.000 0.00 0.00 0.00 2.32
2050 2314 4.218417 GCCAACCAATCACTAGACAACATT 59.782 41.667 0.00 0.00 0.00 2.71
2051 2315 3.758554 GCCAACCAATCACTAGACAACAT 59.241 43.478 0.00 0.00 0.00 2.71
2052 2316 3.146066 GCCAACCAATCACTAGACAACA 58.854 45.455 0.00 0.00 0.00 3.33
2053 2317 3.412386 AGCCAACCAATCACTAGACAAC 58.588 45.455 0.00 0.00 0.00 3.32
2054 2318 3.788227 AGCCAACCAATCACTAGACAA 57.212 42.857 0.00 0.00 0.00 3.18
2055 2319 4.202245 GTAGCCAACCAATCACTAGACA 57.798 45.455 0.00 0.00 0.00 3.41
2067 2331 2.287977 AGAAAAGGTGGTAGCCAACC 57.712 50.000 0.00 0.00 43.36 3.77
2068 2332 3.487372 AGAAGAAAAGGTGGTAGCCAAC 58.513 45.455 0.00 0.00 42.50 3.77
2069 2333 3.137544 TGAGAAGAAAAGGTGGTAGCCAA 59.862 43.478 0.00 0.00 34.18 4.52
2070 2334 2.708861 TGAGAAGAAAAGGTGGTAGCCA 59.291 45.455 0.00 0.00 0.00 4.75
2071 2335 3.418684 TGAGAAGAAAAGGTGGTAGCC 57.581 47.619 0.00 0.00 0.00 3.93
2072 2336 3.502595 GGTTGAGAAGAAAAGGTGGTAGC 59.497 47.826 0.00 0.00 0.00 3.58
2073 2337 4.974399 AGGTTGAGAAGAAAAGGTGGTAG 58.026 43.478 0.00 0.00 0.00 3.18
2074 2338 4.410883 TGAGGTTGAGAAGAAAAGGTGGTA 59.589 41.667 0.00 0.00 0.00 3.25
2075 2339 3.202151 TGAGGTTGAGAAGAAAAGGTGGT 59.798 43.478 0.00 0.00 0.00 4.16
2076 2340 3.565902 GTGAGGTTGAGAAGAAAAGGTGG 59.434 47.826 0.00 0.00 0.00 4.61
2077 2341 4.199310 TGTGAGGTTGAGAAGAAAAGGTG 58.801 43.478 0.00 0.00 0.00 4.00
2078 2342 4.503714 TGTGAGGTTGAGAAGAAAAGGT 57.496 40.909 0.00 0.00 0.00 3.50
2079 2343 5.835113 TTTGTGAGGTTGAGAAGAAAAGG 57.165 39.130 0.00 0.00 0.00 3.11
2080 2344 7.315890 ACTTTTTGTGAGGTTGAGAAGAAAAG 58.684 34.615 0.00 0.00 37.50 2.27
2081 2345 7.227049 ACTTTTTGTGAGGTTGAGAAGAAAA 57.773 32.000 0.00 0.00 0.00 2.29
2082 2346 6.834168 ACTTTTTGTGAGGTTGAGAAGAAA 57.166 33.333 0.00 0.00 0.00 2.52
2083 2347 6.620678 CAACTTTTTGTGAGGTTGAGAAGAA 58.379 36.000 0.00 0.00 40.74 2.52
2084 2348 5.393027 GCAACTTTTTGTGAGGTTGAGAAGA 60.393 40.000 8.55 0.00 40.74 2.87
2085 2349 4.800471 GCAACTTTTTGTGAGGTTGAGAAG 59.200 41.667 8.55 0.00 40.74 2.85
2086 2350 4.381505 GGCAACTTTTTGTGAGGTTGAGAA 60.382 41.667 8.55 0.00 40.74 2.87
2087 2351 3.130340 GGCAACTTTTTGTGAGGTTGAGA 59.870 43.478 8.55 0.00 40.74 3.27
2088 2352 3.119173 TGGCAACTTTTTGTGAGGTTGAG 60.119 43.478 8.55 0.00 40.74 3.02
2089 2353 2.828520 TGGCAACTTTTTGTGAGGTTGA 59.171 40.909 8.55 0.00 40.74 3.18
2090 2354 3.244033 TGGCAACTTTTTGTGAGGTTG 57.756 42.857 0.00 0.00 41.07 3.77
2091 2355 3.007398 TGTTGGCAACTTTTTGTGAGGTT 59.993 39.130 28.71 0.00 34.90 3.50
2092 2356 2.564947 TGTTGGCAACTTTTTGTGAGGT 59.435 40.909 28.71 0.00 34.90 3.85
2093 2357 3.244033 TGTTGGCAACTTTTTGTGAGG 57.756 42.857 28.71 0.00 34.90 3.86
2094 2358 5.447548 CCAAATGTTGGCAACTTTTTGTGAG 60.448 40.000 32.56 24.17 45.17 3.51
2095 2359 4.394300 CCAAATGTTGGCAACTTTTTGTGA 59.606 37.500 32.56 16.94 45.17 3.58
2096 2360 4.660105 CCAAATGTTGGCAACTTTTTGTG 58.340 39.130 32.56 25.34 45.17 3.33
2097 2361 4.961435 CCAAATGTTGGCAACTTTTTGT 57.039 36.364 32.56 19.32 45.17 2.83
2108 2372 6.858993 CAAAATCAGAATTTGCCAAATGTTGG 59.141 34.615 2.91 2.50 42.78 3.77
2109 2373 7.845617 CAAAATCAGAATTTGCCAAATGTTG 57.154 32.000 2.91 5.73 35.27 3.33
2119 2383 6.858993 CCAACATTTGGCAAAATCAGAATTTG 59.141 34.615 17.70 9.58 45.17 2.32
2120 2384 6.972722 CCAACATTTGGCAAAATCAGAATTT 58.027 32.000 17.70 0.00 45.17 1.82
2121 2385 6.563222 CCAACATTTGGCAAAATCAGAATT 57.437 33.333 17.70 0.00 45.17 2.17
2173 2437 5.735285 TGAACATAATTGGTTTGATGCCA 57.265 34.783 0.00 0.00 0.00 4.92
2174 2438 5.931146 TGTTGAACATAATTGGTTTGATGCC 59.069 36.000 0.00 0.00 0.00 4.40
2175 2439 7.118101 ACATGTTGAACATAATTGGTTTGATGC 59.882 33.333 10.89 0.00 36.53 3.91
2176 2440 8.537049 ACATGTTGAACATAATTGGTTTGATG 57.463 30.769 10.89 0.00 36.53 3.07
2177 2441 9.558396 AAACATGTTGAACATAATTGGTTTGAT 57.442 25.926 12.82 1.18 36.53 2.57
2178 2442 8.954950 AAACATGTTGAACATAATTGGTTTGA 57.045 26.923 12.82 0.00 36.53 2.69
2181 2445 9.691362 GTCTAAACATGTTGAACATAATTGGTT 57.309 29.630 12.82 7.76 36.53 3.67
2182 2446 8.020819 CGTCTAAACATGTTGAACATAATTGGT 58.979 33.333 12.82 1.44 36.53 3.67
2183 2447 7.484641 CCGTCTAAACATGTTGAACATAATTGG 59.515 37.037 12.82 10.56 36.53 3.16
2184 2448 8.233868 TCCGTCTAAACATGTTGAACATAATTG 58.766 33.333 12.82 2.72 36.53 2.32
2185 2449 8.234546 GTCCGTCTAAACATGTTGAACATAATT 58.765 33.333 12.82 10.98 36.53 1.40
2186 2450 7.389330 TGTCCGTCTAAACATGTTGAACATAAT 59.611 33.333 12.82 0.00 36.53 1.28
2187 2451 6.706716 TGTCCGTCTAAACATGTTGAACATAA 59.293 34.615 12.82 0.00 36.53 1.90
2188 2452 6.224584 TGTCCGTCTAAACATGTTGAACATA 58.775 36.000 12.82 0.00 36.53 2.29
2189 2453 5.060506 TGTCCGTCTAAACATGTTGAACAT 58.939 37.500 12.82 4.72 39.91 2.71
2190 2454 4.443621 TGTCCGTCTAAACATGTTGAACA 58.556 39.130 12.82 0.00 0.00 3.18
2191 2455 5.607119 ATGTCCGTCTAAACATGTTGAAC 57.393 39.130 12.82 9.67 34.88 3.18
2192 2456 5.760743 TCAATGTCCGTCTAAACATGTTGAA 59.239 36.000 12.82 2.69 36.28 2.69
2193 2457 5.301555 TCAATGTCCGTCTAAACATGTTGA 58.698 37.500 12.82 3.11 36.28 3.18
2194 2458 5.605564 TCAATGTCCGTCTAAACATGTTG 57.394 39.130 12.82 0.12 36.28 3.33
2195 2459 5.063438 CGATCAATGTCCGTCTAAACATGTT 59.937 40.000 4.92 4.92 36.28 2.71
2196 2460 4.566759 CGATCAATGTCCGTCTAAACATGT 59.433 41.667 0.00 0.00 36.28 3.21
2197 2461 4.803613 TCGATCAATGTCCGTCTAAACATG 59.196 41.667 0.00 0.00 36.28 3.21
2207 2471 1.939974 ACATGGTCGATCAATGTCCG 58.060 50.000 0.60 0.00 0.00 4.79
2210 2474 3.126858 CCGAAAACATGGTCGATCAATGT 59.873 43.478 0.60 5.19 39.64 2.71
2219 2483 0.958822 AAGTGGCCGAAAACATGGTC 59.041 50.000 0.00 0.00 0.00 4.02
2220 2484 0.958822 GAAGTGGCCGAAAACATGGT 59.041 50.000 0.00 0.00 0.00 3.55
2221 2485 1.247567 AGAAGTGGCCGAAAACATGG 58.752 50.000 0.00 0.00 0.00 3.66
2222 2486 4.082787 ACATAAGAAGTGGCCGAAAACATG 60.083 41.667 0.00 0.00 0.00 3.21
2230 2507 1.453155 AAGCACATAAGAAGTGGCCG 58.547 50.000 0.00 0.00 37.46 6.13
2231 2508 2.819608 TCAAAGCACATAAGAAGTGGCC 59.180 45.455 0.00 0.00 37.46 5.36
2232 2509 3.503748 ACTCAAAGCACATAAGAAGTGGC 59.496 43.478 0.00 0.00 37.46 5.01
2233 2510 5.239306 TGAACTCAAAGCACATAAGAAGTGG 59.761 40.000 0.00 0.00 37.46 4.00
2241 2518 4.973168 AGGAGTTGAACTCAAAGCACATA 58.027 39.130 24.95 0.00 46.79 2.29
2242 2519 3.825328 AGGAGTTGAACTCAAAGCACAT 58.175 40.909 24.95 0.00 46.79 3.21
2256 2534 6.659242 TGCTAGAGGGAAAATTAAAGGAGTTG 59.341 38.462 0.00 0.00 0.00 3.16
2259 2537 6.659242 TGTTGCTAGAGGGAAAATTAAAGGAG 59.341 38.462 0.00 0.00 0.00 3.69
2266 2544 5.649782 CACATGTTGCTAGAGGGAAAATT 57.350 39.130 0.00 0.00 0.00 1.82
2301 2611 1.741032 GCAGTGGAGTGAGAGCAGC 60.741 63.158 0.00 0.00 0.00 5.25
2302 2612 0.108709 GAGCAGTGGAGTGAGAGCAG 60.109 60.000 0.00 0.00 0.00 4.24
2306 2616 0.829182 TGCAGAGCAGTGGAGTGAGA 60.829 55.000 0.00 0.00 33.32 3.27
2307 2617 0.669932 GTGCAGAGCAGTGGAGTGAG 60.670 60.000 0.00 0.00 40.08 3.51
2312 2622 2.031616 GCTGTGCAGAGCAGTGGA 59.968 61.111 29.31 0.00 40.08 4.02
2313 2623 2.281276 TGCTGTGCAGAGCAGTGG 60.281 61.111 32.56 0.00 44.16 4.00
2329 2639 1.893137 TCAGCCCCGTAGCACTATATG 59.107 52.381 0.00 0.00 34.23 1.78
2331 2641 1.684983 GTTCAGCCCCGTAGCACTATA 59.315 52.381 0.00 0.00 34.23 1.31
2335 2692 1.003718 AAGTTCAGCCCCGTAGCAC 60.004 57.895 0.00 0.00 34.23 4.40
2340 2697 1.228154 GGTTCAAGTTCAGCCCCGT 60.228 57.895 0.00 0.00 0.00 5.28
2341 2698 2.325082 CGGTTCAAGTTCAGCCCCG 61.325 63.158 0.00 0.00 0.00 5.73
2342 2699 0.536460 TTCGGTTCAAGTTCAGCCCC 60.536 55.000 0.00 0.00 0.00 5.80
2346 2703 5.762045 ACATCAAATTCGGTTCAAGTTCAG 58.238 37.500 0.00 0.00 0.00 3.02
2358 2715 5.230726 GCTTGGCTTATTGACATCAAATTCG 59.769 40.000 0.00 0.00 39.55 3.34
2362 2719 3.831333 TGGCTTGGCTTATTGACATCAAA 59.169 39.130 0.00 0.00 39.55 2.69
2363 2720 3.429492 TGGCTTGGCTTATTGACATCAA 58.571 40.909 0.00 0.00 40.51 2.57
2364 2721 3.084536 TGGCTTGGCTTATTGACATCA 57.915 42.857 0.00 0.00 31.11 3.07
2366 2723 3.634504 TCATGGCTTGGCTTATTGACAT 58.365 40.909 0.09 0.00 31.11 3.06
2367 2724 3.084536 TCATGGCTTGGCTTATTGACA 57.915 42.857 0.09 0.00 0.00 3.58
2368 2725 3.193267 TGTTCATGGCTTGGCTTATTGAC 59.807 43.478 0.09 0.00 0.00 3.18
2373 2778 2.094078 GCATTGTTCATGGCTTGGCTTA 60.094 45.455 0.09 0.00 32.81 3.09
2395 2800 2.482333 CGGTACTCGAGAGCCAGGG 61.482 68.421 21.68 4.46 42.43 4.45
2396 2801 3.111939 CGGTACTCGAGAGCCAGG 58.888 66.667 21.68 5.14 42.43 4.45
2397 2802 1.729470 ATGCGGTACTCGAGAGCCAG 61.729 60.000 21.68 15.76 42.43 4.85
2398 2803 0.464916 TATGCGGTACTCGAGAGCCA 60.465 55.000 21.68 12.10 42.43 4.75
2399 2804 0.040246 GTATGCGGTACTCGAGAGCC 60.040 60.000 21.68 18.35 42.43 4.70
2400 2805 0.040246 GGTATGCGGTACTCGAGAGC 60.040 60.000 21.68 17.94 42.43 4.09
2401 2806 0.592148 GGGTATGCGGTACTCGAGAG 59.408 60.000 21.68 8.42 42.43 3.20
2402 2807 0.182061 AGGGTATGCGGTACTCGAGA 59.818 55.000 21.68 0.00 38.89 4.04
2403 2808 0.311165 CAGGGTATGCGGTACTCGAG 59.689 60.000 11.84 11.84 38.89 4.04
2404 2809 0.394762 ACAGGGTATGCGGTACTCGA 60.395 55.000 7.77 0.00 38.89 4.04
2405 2810 0.458669 AACAGGGTATGCGGTACTCG 59.541 55.000 0.00 0.00 38.89 4.18
2406 2811 1.535437 CGAACAGGGTATGCGGTACTC 60.535 57.143 0.00 0.00 33.71 2.59
2407 2812 0.458669 CGAACAGGGTATGCGGTACT 59.541 55.000 0.00 0.00 33.64 2.73
2408 2813 0.457035 TCGAACAGGGTATGCGGTAC 59.543 55.000 0.00 0.00 0.00 3.34
2409 2814 1.405872 ATCGAACAGGGTATGCGGTA 58.594 50.000 0.00 0.00 0.00 4.02
2419 2824 3.367607 GAGAGACATCGAATCGAACAGG 58.632 50.000 10.12 2.49 39.99 4.00
2451 2856 0.673644 GAATGGACACCGGTCACCAG 60.674 60.000 26.34 10.74 46.17 4.00
2453 2858 1.740296 CGAATGGACACCGGTCACC 60.740 63.158 2.59 12.21 46.17 4.02
2456 2861 2.818274 GGCGAATGGACACCGGTC 60.818 66.667 2.59 0.00 43.55 4.79
2468 2873 0.768622 TGAAAGGAGAAAGGGGCGAA 59.231 50.000 0.00 0.00 0.00 4.70
2472 2877 4.474394 AGAAAACTGAAAGGAGAAAGGGG 58.526 43.478 0.00 0.00 39.30 4.79
2523 2928 0.659957 GACAAGCCAATCGCAGGATC 59.340 55.000 0.00 0.00 41.38 3.36
2530 2935 1.998315 CAGAGACAGACAAGCCAATCG 59.002 52.381 0.00 0.00 0.00 3.34
2544 2949 1.164662 ATGCGCCATGATGCAGAGAC 61.165 55.000 4.18 0.00 45.52 3.36
2597 3002 2.139323 TACTGAGAAGCCGCTCCTAA 57.861 50.000 0.00 0.00 33.95 2.69
2610 3015 8.240883 ACTAACGAGCTTATGTTTTTACTGAG 57.759 34.615 5.44 0.00 0.00 3.35
2622 3027 8.828688 AGTAGAAAACAAACTAACGAGCTTAT 57.171 30.769 0.00 0.00 0.00 1.73
2625 3030 6.514063 AGAGTAGAAAACAAACTAACGAGCT 58.486 36.000 0.00 0.00 0.00 4.09
2628 3033 7.376866 CACGTAGAGTAGAAAACAAACTAACGA 59.623 37.037 12.94 0.00 0.00 3.85
2629 3034 7.376866 TCACGTAGAGTAGAAAACAAACTAACG 59.623 37.037 0.00 0.00 0.00 3.18
2630 3035 8.566008 TCACGTAGAGTAGAAAACAAACTAAC 57.434 34.615 0.00 0.00 0.00 2.34
2631 3036 9.585099 TTTCACGTAGAGTAGAAAACAAACTAA 57.415 29.630 0.00 0.00 31.72 2.24
2632 3037 9.754382 ATTTCACGTAGAGTAGAAAACAAACTA 57.246 29.630 1.27 0.00 35.32 2.24
2633 3038 8.658499 ATTTCACGTAGAGTAGAAAACAAACT 57.342 30.769 1.27 0.00 35.32 2.66
2637 3042 9.531942 TGTTTATTTCACGTAGAGTAGAAAACA 57.468 29.630 1.27 0.00 35.32 2.83
2639 3044 9.970395 TCTGTTTATTTCACGTAGAGTAGAAAA 57.030 29.630 1.27 0.00 35.32 2.29
2640 3045 9.622004 CTCTGTTTATTTCACGTAGAGTAGAAA 57.378 33.333 0.00 0.00 35.76 2.52
2641 3046 8.790718 ACTCTGTTTATTTCACGTAGAGTAGAA 58.209 33.333 9.49 0.00 40.93 2.10
2642 3047 8.235226 CACTCTGTTTATTTCACGTAGAGTAGA 58.765 37.037 10.58 0.00 40.82 2.59
2643 3048 7.008447 GCACTCTGTTTATTTCACGTAGAGTAG 59.992 40.741 10.58 7.54 40.82 2.57
2644 3049 6.805271 GCACTCTGTTTATTTCACGTAGAGTA 59.195 38.462 10.58 0.00 40.82 2.59
2645 3050 5.634020 GCACTCTGTTTATTTCACGTAGAGT 59.366 40.000 6.12 6.12 42.80 3.24
2646 3051 5.062308 GGCACTCTGTTTATTTCACGTAGAG 59.938 44.000 4.98 4.98 36.98 2.43
2647 3052 4.927425 GGCACTCTGTTTATTTCACGTAGA 59.073 41.667 0.00 0.00 0.00 2.59
2648 3053 4.929808 AGGCACTCTGTTTATTTCACGTAG 59.070 41.667 0.00 0.00 0.00 3.51
2649 3054 4.890088 AGGCACTCTGTTTATTTCACGTA 58.110 39.130 0.00 0.00 0.00 3.57
2650 3055 3.740115 AGGCACTCTGTTTATTTCACGT 58.260 40.909 0.00 0.00 0.00 4.49
2651 3056 4.378459 GGAAGGCACTCTGTTTATTTCACG 60.378 45.833 0.00 0.00 38.49 4.35
2652 3057 4.518970 TGGAAGGCACTCTGTTTATTTCAC 59.481 41.667 0.00 0.00 38.49 3.18
2653 3058 4.724399 TGGAAGGCACTCTGTTTATTTCA 58.276 39.130 0.00 0.00 38.49 2.69
2654 3059 5.415701 TCATGGAAGGCACTCTGTTTATTTC 59.584 40.000 0.00 0.00 38.49 2.17
2655 3060 5.183904 GTCATGGAAGGCACTCTGTTTATTT 59.816 40.000 0.00 0.00 38.49 1.40
2656 3061 4.702131 GTCATGGAAGGCACTCTGTTTATT 59.298 41.667 0.00 0.00 38.49 1.40
2657 3062 4.265073 GTCATGGAAGGCACTCTGTTTAT 58.735 43.478 0.00 0.00 38.49 1.40
2658 3063 3.674997 GTCATGGAAGGCACTCTGTTTA 58.325 45.455 0.00 0.00 38.49 2.01
2659 3064 2.508526 GTCATGGAAGGCACTCTGTTT 58.491 47.619 0.00 0.00 38.49 2.83
2660 3065 1.609061 CGTCATGGAAGGCACTCTGTT 60.609 52.381 0.00 0.00 38.49 3.16
2661 3066 0.036952 CGTCATGGAAGGCACTCTGT 60.037 55.000 0.00 0.00 38.49 3.41
2662 3067 0.742281 CCGTCATGGAAGGCACTCTG 60.742 60.000 0.00 0.00 38.49 3.35
2663 3068 0.904865 TCCGTCATGGAAGGCACTCT 60.905 55.000 0.00 0.00 46.38 3.24
2664 3069 1.596934 TCCGTCATGGAAGGCACTC 59.403 57.895 0.00 0.00 46.38 3.51
2665 3070 3.805928 TCCGTCATGGAAGGCACT 58.194 55.556 0.00 0.00 46.38 4.40
2673 3078 4.441792 TGATGTGATTTACTCCGTCATGG 58.558 43.478 0.00 0.00 40.09 3.66
2674 3079 5.351458 TCTGATGTGATTTACTCCGTCATG 58.649 41.667 0.00 0.00 0.00 3.07
2675 3080 5.598416 TCTGATGTGATTTACTCCGTCAT 57.402 39.130 0.00 0.00 0.00 3.06
2676 3081 5.400066 TTCTGATGTGATTTACTCCGTCA 57.600 39.130 0.00 0.00 0.00 4.35
2677 3082 6.910536 ATTTCTGATGTGATTTACTCCGTC 57.089 37.500 0.00 0.00 0.00 4.79
2678 3083 8.964476 AATATTTCTGATGTGATTTACTCCGT 57.036 30.769 0.00 0.00 0.00 4.69
2719 3124 7.672122 TCTTTTCTCTAGTATTAGAACCCCC 57.328 40.000 0.00 0.00 35.55 5.40
2720 3125 9.767228 GATTCTTTTCTCTAGTATTAGAACCCC 57.233 37.037 0.00 0.00 35.55 4.95
2721 3126 9.465985 CGATTCTTTTCTCTAGTATTAGAACCC 57.534 37.037 0.00 0.00 35.55 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.