Multiple sequence alignment - TraesCS3D01G350000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G350000 chr3D 100.000 5957 0 0 1 5957 461306938 461312894 0.000000e+00 11001.0
1 TraesCS3D01G350000 chr3D 83.267 502 76 5 1484 1982 275949651 275950147 7.040000e-124 455.0
2 TraesCS3D01G350000 chr3D 90.566 106 10 0 5746 5851 461312626 461312731 2.240000e-29 141.0
3 TraesCS3D01G350000 chr3D 90.566 106 10 0 5689 5794 461312683 461312788 2.240000e-29 141.0
4 TraesCS3D01G350000 chr3D 93.902 82 4 1 996 1077 599592635 599592715 8.110000e-24 122.0
5 TraesCS3D01G350000 chr3D 92.683 82 6 0 996 1077 494416888 494416969 1.050000e-22 119.0
6 TraesCS3D01G350000 chr3A 94.731 1803 76 9 3994 5794 603811028 603812813 0.000000e+00 2785.0
7 TraesCS3D01G350000 chr3A 88.398 1922 133 32 827 2706 603807805 603809678 0.000000e+00 2231.0
8 TraesCS3D01G350000 chr3A 94.742 1046 41 8 2706 3744 603809991 603811029 0.000000e+00 1615.0
9 TraesCS3D01G350000 chr3A 88.530 279 21 1 3743 4010 12408996 12408718 1.600000e-85 327.0
10 TraesCS3D01G350000 chr3A 94.366 142 7 1 2190 2331 579913585 579913445 3.620000e-52 217.0
11 TraesCS3D01G350000 chr3A 95.327 107 5 0 5746 5852 603812708 603812814 2.850000e-38 171.0
12 TraesCS3D01G350000 chr3A 94.495 109 6 0 5849 5957 603813159 603813267 1.030000e-37 169.0
13 TraesCS3D01G350000 chr3A 92.222 90 7 0 998 1087 698010704 698010793 1.740000e-25 128.0
14 TraesCS3D01G350000 chr3A 90.000 60 4 2 2735 2793 197860916 197860974 6.400000e-10 76.8
15 TraesCS3D01G350000 chr3B 87.902 2364 151 49 367 2675 612097820 612100103 0.000000e+00 2656.0
16 TraesCS3D01G350000 chr3B 89.864 1697 107 28 4106 5794 612101759 612103398 0.000000e+00 2121.0
17 TraesCS3D01G350000 chr3B 93.785 1062 40 9 2707 3744 612100391 612101450 0.000000e+00 1572.0
18 TraesCS3D01G350000 chr3B 90.517 348 30 2 6 350 612097485 612097832 1.960000e-124 457.0
19 TraesCS3D01G350000 chr3B 90.335 269 14 2 3743 3999 243240765 243240497 5.720000e-90 342.0
20 TraesCS3D01G350000 chr3B 88.417 259 25 2 3742 4000 499072966 499072713 2.090000e-79 307.0
21 TraesCS3D01G350000 chr3B 91.981 212 11 1 5746 5957 612103293 612103498 5.840000e-75 292.0
22 TraesCS3D01G350000 chr3B 87.008 254 32 1 3743 3995 824261334 824261587 9.770000e-73 285.0
23 TraesCS3D01G350000 chr3B 92.727 55 2 2 2740 2793 244237872 244237819 1.780000e-10 78.7
24 TraesCS3D01G350000 chr3B 88.136 59 3 4 2736 2792 75663648 75663704 3.850000e-07 67.6
25 TraesCS3D01G350000 chr7D 85.230 501 65 6 1483 1982 154202305 154201813 1.920000e-139 507.0
26 TraesCS3D01G350000 chr1D 84.413 494 65 7 1485 1976 457092629 457093112 5.400000e-130 475.0
27 TraesCS3D01G350000 chr1D 83.865 502 70 10 1483 1981 10148543 10148050 9.040000e-128 468.0
28 TraesCS3D01G350000 chr1D 86.466 266 25 1 3741 3995 315462496 315462231 1.260000e-71 281.0
29 TraesCS3D01G350000 chr1D 93.662 142 8 1 2190 2331 336732510 336732370 1.680000e-50 211.0
30 TraesCS3D01G350000 chr1D 80.709 254 35 13 4261 4508 383314983 383314738 1.020000e-42 185.0
31 TraesCS3D01G350000 chr1D 79.021 286 34 15 3365 3644 383315375 383315110 7.940000e-39 172.0
32 TraesCS3D01G350000 chr1D 90.217 92 6 2 986 1075 383316818 383316728 3.770000e-22 117.0
33 TraesCS3D01G350000 chr5D 83.730 504 74 7 1484 1983 11436955 11436456 2.510000e-128 470.0
34 TraesCS3D01G350000 chr5D 94.286 140 7 1 2192 2331 364017583 364017445 4.680000e-51 213.0
35 TraesCS3D01G350000 chr5D 91.304 92 8 0 996 1087 524586647 524586738 6.270000e-25 126.0
36 TraesCS3D01G350000 chr7B 83.698 503 73 6 1484 1982 48882512 48883009 3.250000e-127 466.0
37 TraesCS3D01G350000 chr7B 87.226 274 22 3 3736 3996 1479011 1478738 3.490000e-77 300.0
38 TraesCS3D01G350000 chr7B 95.833 48 2 0 5178 5225 226609188 226609235 1.780000e-10 78.7
39 TraesCS3D01G350000 chr7B 88.889 54 5 1 5181 5234 226609186 226609134 1.390000e-06 65.8
40 TraesCS3D01G350000 chr1B 83.235 507 75 7 1484 1984 2059886 2060388 1.960000e-124 457.0
41 TraesCS3D01G350000 chr1B 82.840 507 77 7 1484 1984 2082513 2083015 4.240000e-121 446.0
42 TraesCS3D01G350000 chr1B 90.335 269 15 1 3742 3999 505094476 505094208 5.720000e-90 342.0
43 TraesCS3D01G350000 chr1B 80.695 259 34 14 4248 4502 513540263 513540017 2.830000e-43 187.0
44 TraesCS3D01G350000 chr1B 78.671 286 35 15 3365 3644 513540643 513540378 3.690000e-37 167.0
45 TraesCS3D01G350000 chr1B 90.217 92 6 2 986 1075 513542086 513541996 3.770000e-22 117.0
46 TraesCS3D01G350000 chr1B 89.474 57 6 0 5170 5226 34323692 34323748 8.280000e-09 73.1
47 TraesCS3D01G350000 chr2D 82.903 503 80 5 1481 1979 578925812 578925312 1.180000e-121 448.0
48 TraesCS3D01G350000 chr6B 89.493 276 17 2 3739 4002 714079007 714079282 7.400000e-89 339.0
49 TraesCS3D01G350000 chr6B 89.583 96 8 2 996 1090 693281157 693281251 2.920000e-23 121.0
50 TraesCS3D01G350000 chr6B 84.337 83 8 5 2706 2785 532331336 532331416 6.400000e-10 76.8
51 TraesCS3D01G350000 chr5B 90.588 255 21 3 3743 3995 689198732 689198985 9.570000e-88 335.0
52 TraesCS3D01G350000 chr5B 86.567 268 25 1 3741 3997 522919972 522920239 9.770000e-73 285.0
53 TraesCS3D01G350000 chr5B 95.122 82 4 0 996 1077 659169297 659169378 4.850000e-26 130.0
54 TraesCS3D01G350000 chr5B 94.000 50 2 1 2735 2783 541299778 541299729 2.300000e-09 75.0
55 TraesCS3D01G350000 chr5B 92.308 52 3 1 2735 2785 660636847 660636898 8.280000e-09 73.1
56 TraesCS3D01G350000 chr4A 89.011 273 18 2 3741 4002 121496009 121496280 1.600000e-85 327.0
57 TraesCS3D01G350000 chr4A 83.636 275 32 2 3739 4002 721997221 721996949 4.610000e-61 246.0
58 TraesCS3D01G350000 chr4A 93.750 48 2 1 5178 5225 652870950 652870904 2.980000e-08 71.3
59 TraesCS3D01G350000 chr4A 91.837 49 4 0 5177 5225 705877018 705876970 1.070000e-07 69.4
60 TraesCS3D01G350000 chr4A 91.837 49 4 0 5177 5225 707390403 707390355 1.070000e-07 69.4
61 TraesCS3D01G350000 chr4A 88.889 54 5 1 5181 5234 652870952 652871004 1.390000e-06 65.8
62 TraesCS3D01G350000 chr4B 89.723 253 26 0 3743 3995 582361021 582360769 2.070000e-84 324.0
63 TraesCS3D01G350000 chrUn 87.636 275 19 5 3742 4004 96158773 96159044 7.500000e-79 305.0
64 TraesCS3D01G350000 chr2B 90.732 205 19 0 2132 2336 316299174 316298970 2.120000e-69 274.0
65 TraesCS3D01G350000 chr4D 94.366 142 7 1 2190 2331 196908967 196909107 3.620000e-52 217.0
66 TraesCS3D01G350000 chr1A 93.243 148 8 2 2192 2338 54873575 54873429 3.620000e-52 217.0
67 TraesCS3D01G350000 chr1A 81.273 267 36 13 4248 4508 483027390 483027132 2.810000e-48 204.0
68 TraesCS3D01G350000 chr1A 78.125 288 36 14 3365 3644 483027773 483027505 2.220000e-34 158.0
69 TraesCS3D01G350000 chr1A 90.217 92 6 2 986 1075 483029471 483029381 3.770000e-22 117.0
70 TraesCS3D01G350000 chr1A 92.308 78 6 0 2990 3067 483028169 483028092 1.750000e-20 111.0
71 TraesCS3D01G350000 chr5A 94.286 140 7 1 2192 2331 501874745 501874883 4.680000e-51 213.0
72 TraesCS3D01G350000 chr5A 96.341 82 3 0 996 1077 650834309 650834390 1.040000e-27 135.0
73 TraesCS3D01G350000 chr7A 91.111 90 8 0 998 1087 512022506 512022595 8.110000e-24 122.0
74 TraesCS3D01G350000 chr6A 91.111 90 8 0 998 1087 57134578 57134489 8.110000e-24 122.0
75 TraesCS3D01G350000 chr6A 90.217 92 9 0 996 1087 50937693 50937602 2.920000e-23 121.0
76 TraesCS3D01G350000 chr6A 90.000 90 9 0 998 1087 56157604 56157515 3.770000e-22 117.0
77 TraesCS3D01G350000 chr6A 89.130 92 10 0 996 1087 128940369 128940278 1.360000e-21 115.0
78 TraesCS3D01G350000 chr6A 92.308 52 1 3 2736 2785 54489060 54489010 2.980000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G350000 chr3D 461306938 461312894 5956 False 3761.0 11001 93.710667 1 5957 3 chr3D.!!$F4 5956
1 TraesCS3D01G350000 chr3A 603807805 603813267 5462 False 1394.2 2785 93.538600 827 5957 5 chr3A.!!$F3 5130
2 TraesCS3D01G350000 chr3B 612097485 612103498 6013 False 1419.6 2656 90.809800 6 5957 5 chr3B.!!$F3 5951
3 TraesCS3D01G350000 chr1B 2059886 2060388 502 False 457.0 457 83.235000 1484 1984 1 chr1B.!!$F1 500
4 TraesCS3D01G350000 chr1B 2082513 2083015 502 False 446.0 446 82.840000 1484 1984 1 chr1B.!!$F2 500
5 TraesCS3D01G350000 chr2D 578925312 578925812 500 True 448.0 448 82.903000 1481 1979 1 chr2D.!!$R1 498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
159 162 0.035458 GACAGAGAGGGTGTTGGGTG 59.965 60.0 0.00 0.0 0.0 4.61 F
402 406 0.249155 CATCACCGCCAAATCATGCC 60.249 55.0 0.00 0.0 0.0 4.40 F
547 551 0.390603 CATTCAGACGTAACCGCCCA 60.391 55.0 0.00 0.0 37.7 5.36 F
1347 1403 0.038892 GCAACCGACGTGAGGAAGTA 60.039 55.0 13.03 0.0 0.0 2.24 F
1529 1585 0.321122 GGTCTGACCTGAGCTGGTTG 60.321 60.0 19.53 0.0 41.0 3.77 F
1662 1732 0.390866 ATCCGATGATGGCGATGCTC 60.391 55.0 0.00 0.0 0.0 4.26 F
2520 2616 0.764271 TTCTGTGTGCATGAGACCCA 59.236 50.0 0.00 0.0 0.0 4.51 F
3756 4193 0.338814 ACCAATACTCCCTCCGTCCT 59.661 55.0 0.00 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1170 1211 0.110192 GACGCAGCAAGCCAGTTTAC 60.110 55.000 0.00 0.0 41.38 2.01 R
1203 1253 0.393537 CCAGGCCAGATGACTTCCAC 60.394 60.000 5.01 0.0 0.00 4.02 R
2273 2368 0.742635 GTCTGACAGCAAGCTAGCCC 60.743 60.000 12.13 0.0 34.23 5.19 R
2762 3172 0.811281 CCCAGTTCTTTGGCCGATTC 59.189 55.000 0.00 0.0 36.88 2.52 R
3428 3858 5.223382 ACAGTACTGTTGAAAGATGACTCG 58.777 41.667 22.95 0.0 41.83 4.18 R
3676 4111 4.113354 GGGAGTAGACAATAAGAACAGCG 58.887 47.826 0.00 0.0 0.00 5.18 R
3981 4418 0.034059 CATGCATACTCCCTCCGTCC 59.966 60.000 0.00 0.0 0.00 4.79 R
4982 5623 0.804989 GTTGTCCATGGCTAGTGCAC 59.195 55.000 9.40 9.4 41.91 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 141 6.310711 CCAAGGTTGTTAGAGTCGATAAGAAC 59.689 42.308 8.15 8.15 36.29 3.01
141 144 5.392380 GGTTGTTAGAGTCGATAAGAACCGA 60.392 44.000 16.16 0.00 42.87 4.69
158 161 1.472662 CGACAGAGAGGGTGTTGGGT 61.473 60.000 0.00 0.00 0.00 4.51
159 162 0.035458 GACAGAGAGGGTGTTGGGTG 59.965 60.000 0.00 0.00 0.00 4.61
161 164 2.358737 GAGAGGGTGTTGGGTGCG 60.359 66.667 0.00 0.00 0.00 5.34
167 170 2.719354 GTGTTGGGTGCGTGAACC 59.281 61.111 0.00 0.00 39.71 3.62
174 177 3.543884 GGTGCGTGAACCCAATCTA 57.456 52.632 0.00 0.00 33.79 1.98
184 187 2.094762 ACCCAATCTACAAGCACGAC 57.905 50.000 0.00 0.00 0.00 4.34
191 194 1.156736 CTACAAGCACGACCCAAAGG 58.843 55.000 0.00 0.00 40.04 3.11
197 200 1.301623 CACGACCCAAAGGCCCATA 59.698 57.895 0.00 0.00 36.11 2.74
222 225 3.686726 GGCAACAACATGAACTAGGAGAG 59.313 47.826 0.00 0.00 0.00 3.20
257 260 5.841957 ACTTGCAATTGACTCAAAACTCT 57.158 34.783 10.34 0.00 0.00 3.24
260 263 6.096001 ACTTGCAATTGACTCAAAACTCTCTT 59.904 34.615 10.34 0.00 0.00 2.85
279 282 4.207165 TCTTAAAAAGTGAGCTTGCCAGT 58.793 39.130 0.00 0.00 34.71 4.00
323 327 8.481314 TCATGTCTGAATAGTGAAAAGCTCTAT 58.519 33.333 0.00 0.00 35.42 1.98
324 328 9.107177 CATGTCTGAATAGTGAAAAGCTCTATT 57.893 33.333 4.71 4.71 42.76 1.73
344 348 9.612620 CTCTATTCAAAACAAACCTAACATCAC 57.387 33.333 0.00 0.00 0.00 3.06
350 354 2.292292 ACAAACCTAACATCACCGTTGC 59.708 45.455 0.00 0.00 0.00 4.17
352 356 0.322187 ACCTAACATCACCGTTGCCC 60.322 55.000 0.00 0.00 0.00 5.36
353 357 1.366111 CCTAACATCACCGTTGCCCG 61.366 60.000 0.00 0.00 0.00 6.13
354 358 0.672401 CTAACATCACCGTTGCCCGT 60.672 55.000 0.00 0.00 33.66 5.28
355 359 0.250381 TAACATCACCGTTGCCCGTT 60.250 50.000 0.00 0.00 33.66 4.44
356 360 1.104577 AACATCACCGTTGCCCGTTT 61.105 50.000 0.00 0.00 33.66 3.60
357 361 1.209127 CATCACCGTTGCCCGTTTC 59.791 57.895 0.00 0.00 33.66 2.78
358 362 2.322081 ATCACCGTTGCCCGTTTCG 61.322 57.895 0.00 0.00 33.66 3.46
359 363 2.718747 ATCACCGTTGCCCGTTTCGA 62.719 55.000 0.00 0.00 33.66 3.71
360 364 2.203042 ACCGTTGCCCGTTTCGAA 60.203 55.556 0.00 0.00 33.66 3.71
361 365 1.818785 ACCGTTGCCCGTTTCGAAA 60.819 52.632 6.47 6.47 33.66 3.46
362 366 1.355916 CCGTTGCCCGTTTCGAAAA 59.644 52.632 13.10 0.00 33.66 2.29
363 367 0.659123 CCGTTGCCCGTTTCGAAAAG 60.659 55.000 13.10 14.60 33.66 2.27
364 368 0.305313 CGTTGCCCGTTTCGAAAAGA 59.695 50.000 22.90 2.77 0.00 2.52
365 369 1.750351 GTTGCCCGTTTCGAAAAGAC 58.250 50.000 22.90 15.21 0.00 3.01
366 370 1.064357 GTTGCCCGTTTCGAAAAGACA 59.936 47.619 22.90 17.28 0.00 3.41
367 371 1.380524 TGCCCGTTTCGAAAAGACAA 58.619 45.000 22.90 6.77 0.00 3.18
368 372 1.064357 TGCCCGTTTCGAAAAGACAAC 59.936 47.619 22.90 10.67 0.00 3.32
369 373 1.064357 GCCCGTTTCGAAAAGACAACA 59.936 47.619 22.90 0.00 0.00 3.33
370 374 2.287368 GCCCGTTTCGAAAAGACAACAT 60.287 45.455 22.90 0.00 0.00 2.71
371 375 3.551551 CCCGTTTCGAAAAGACAACATC 58.448 45.455 22.90 2.71 0.00 3.06
372 376 3.002862 CCCGTTTCGAAAAGACAACATCA 59.997 43.478 22.90 0.00 0.00 3.07
373 377 3.966218 CCGTTTCGAAAAGACAACATCAC 59.034 43.478 22.90 2.09 0.00 3.06
374 378 3.966218 CGTTTCGAAAAGACAACATCACC 59.034 43.478 17.48 0.00 0.00 4.02
375 379 3.870723 TTCGAAAAGACAACATCACCG 57.129 42.857 0.00 0.00 0.00 4.94
376 380 2.828877 TCGAAAAGACAACATCACCGT 58.171 42.857 0.00 0.00 0.00 4.83
377 381 3.199677 TCGAAAAGACAACATCACCGTT 58.800 40.909 0.00 0.00 0.00 4.44
382 386 3.339731 CAACATCACCGTTGCCGT 58.660 55.556 0.00 0.00 39.82 5.68
383 387 1.206578 CAACATCACCGTTGCCGTC 59.793 57.895 0.00 0.00 39.82 4.79
384 388 1.227704 AACATCACCGTTGCCGTCA 60.228 52.632 0.00 0.00 0.00 4.35
385 389 0.605319 AACATCACCGTTGCCGTCAT 60.605 50.000 0.00 0.00 0.00 3.06
390 394 3.487202 CCGTTGCCGTCATCACCG 61.487 66.667 0.00 0.00 0.00 4.94
391 395 4.147322 CGTTGCCGTCATCACCGC 62.147 66.667 0.00 0.00 0.00 5.68
402 406 0.249155 CATCACCGCCAAATCATGCC 60.249 55.000 0.00 0.00 0.00 4.40
408 412 1.227060 GCCAAATCATGCCGAAGCC 60.227 57.895 0.00 0.00 38.69 4.35
426 430 1.151668 CCCTTGACGAGAACTTGCTG 58.848 55.000 0.00 0.00 0.00 4.41
429 433 0.468226 TTGACGAGAACTTGCTGGGT 59.532 50.000 0.00 0.00 0.00 4.51
433 437 1.856265 CGAGAACTTGCTGGGTTGCC 61.856 60.000 0.00 0.00 0.00 4.52
436 440 1.228552 AACTTGCTGGGTTGCCGAT 60.229 52.632 0.00 0.00 0.00 4.18
440 444 2.124151 GCTGGGTTGCCGATCCAT 60.124 61.111 0.00 0.00 0.00 3.41
441 445 2.189499 GCTGGGTTGCCGATCCATC 61.189 63.158 0.00 0.00 0.00 3.51
451 455 2.780595 CGATCCATCGCCAAAACCT 58.219 52.632 0.00 0.00 43.84 3.50
453 457 1.025041 GATCCATCGCCAAAACCTCC 58.975 55.000 0.00 0.00 0.00 4.30
466 470 4.082125 CAAAACCTCCAGTGCTCCTTATT 58.918 43.478 0.00 0.00 0.00 1.40
468 472 5.717119 AAACCTCCAGTGCTCCTTATTAT 57.283 39.130 0.00 0.00 0.00 1.28
469 473 4.965200 ACCTCCAGTGCTCCTTATTATC 57.035 45.455 0.00 0.00 0.00 1.75
470 474 3.322254 ACCTCCAGTGCTCCTTATTATCG 59.678 47.826 0.00 0.00 0.00 2.92
472 476 2.037251 TCCAGTGCTCCTTATTATCGGC 59.963 50.000 0.00 0.00 0.00 5.54
473 477 2.417719 CAGTGCTCCTTATTATCGGCC 58.582 52.381 0.00 0.00 0.00 6.13
474 478 1.000955 AGTGCTCCTTATTATCGGCCG 59.999 52.381 22.12 22.12 0.00 6.13
476 480 1.352156 GCTCCTTATTATCGGCCGCG 61.352 60.000 23.51 0.00 0.00 6.46
479 483 1.342082 CCTTATTATCGGCCGCGACG 61.342 60.000 23.51 12.81 34.09 5.12
495 499 2.280524 CGACCGCACCAGGACAAA 60.281 61.111 0.00 0.00 34.73 2.83
508 512 1.142060 AGGACAAACATGGAACCGTGA 59.858 47.619 18.35 0.00 36.80 4.35
525 529 2.541178 CGTGAGACTGTTATACGCCTCC 60.541 54.545 0.00 0.00 0.00 4.30
527 531 3.068307 GTGAGACTGTTATACGCCTCCAT 59.932 47.826 0.00 0.00 0.00 3.41
532 536 4.632153 ACTGTTATACGCCTCCATCATTC 58.368 43.478 0.00 0.00 0.00 2.67
533 537 4.100963 ACTGTTATACGCCTCCATCATTCA 59.899 41.667 0.00 0.00 0.00 2.57
540 544 2.481276 CGCCTCCATCATTCAGACGTAA 60.481 50.000 0.00 0.00 0.00 3.18
547 551 0.390603 CATTCAGACGTAACCGCCCA 60.391 55.000 0.00 0.00 37.70 5.36
626 630 4.371681 TGCTTCCTCTCCTTTTATAGGGT 58.628 43.478 0.00 0.00 44.86 4.34
629 633 5.590663 GCTTCCTCTCCTTTTATAGGGTTTG 59.409 44.000 0.00 0.00 44.86 2.93
637 641 7.389607 TCTCCTTTTATAGGGTTTGTTTCTTCG 59.610 37.037 0.00 0.00 44.86 3.79
661 665 3.430333 TTTGGTTCAAAGAAAGGTCGC 57.570 42.857 0.00 0.00 0.00 5.19
889 917 1.822186 GCATCGGCCGGTACCAATT 60.822 57.895 27.83 0.00 0.00 2.32
896 924 1.078708 CCGGTACCAATTCGGCACT 60.079 57.895 13.54 0.00 39.03 4.40
928 961 2.650163 CGATGTTCCTTCGGTCGTC 58.350 57.895 0.00 0.00 33.05 4.20
966 1001 0.817013 CTCTTCTCTCTCGCCAGCTT 59.183 55.000 0.00 0.00 0.00 3.74
967 1002 1.204467 CTCTTCTCTCTCGCCAGCTTT 59.796 52.381 0.00 0.00 0.00 3.51
1170 1211 2.684881 GCAAGGGGATGATAGTTGTGTG 59.315 50.000 0.00 0.00 0.00 3.82
1200 1250 3.000080 GCTGCGTCTGTTCGGTTCG 62.000 63.158 0.00 0.00 0.00 3.95
1203 1253 0.937699 TGCGTCTGTTCGGTTCGAAG 60.938 55.000 0.00 0.00 46.54 3.79
1258 1311 1.482593 AGATGGATGGACTGGTCGTTC 59.517 52.381 0.00 0.00 0.00 3.95
1259 1312 0.541863 ATGGATGGACTGGTCGTTCC 59.458 55.000 11.29 11.29 34.08 3.62
1281 1334 3.938963 CGGTAGCTTTAATTTGCTCCAGA 59.061 43.478 0.00 0.00 40.35 3.86
1288 1341 5.680665 GCTTTAATTTGCTCCAGAGGATTGG 60.681 44.000 0.00 0.00 39.70 3.16
1292 1345 4.591321 TTTGCTCCAGAGGATTGGTAAT 57.409 40.909 0.00 0.00 39.35 1.89
1299 1352 4.838986 TCCAGAGGATTGGTAATAGCCTAC 59.161 45.833 0.00 0.00 39.35 3.18
1301 1354 4.281182 CAGAGGATTGGTAATAGCCTACGT 59.719 45.833 0.00 0.00 0.00 3.57
1306 1359 6.208994 AGGATTGGTAATAGCCTACGTCTAAG 59.791 42.308 0.00 0.00 0.00 2.18
1330 1386 4.502939 TGCTGTGGTGGCAGTGCA 62.503 61.111 18.61 0.00 38.65 4.57
1336 1392 3.660111 GGTGGCAGTGCAACCGAC 61.660 66.667 25.86 3.66 43.23 4.79
1347 1403 0.038892 GCAACCGACGTGAGGAAGTA 60.039 55.000 13.03 0.00 0.00 2.24
1385 1441 2.736670 AGTTTCTTGGTGAACTGCCT 57.263 45.000 0.00 0.00 33.88 4.75
1405 1461 1.280457 AGGAAGGGATTTCAGCGTCT 58.720 50.000 0.00 0.00 37.54 4.18
1441 1497 1.801178 CGCTCTGGAAAGTCAGAAACC 59.199 52.381 0.00 0.00 42.46 3.27
1471 1527 6.073222 GCGATATAATCAAAACTGTAGGTGGG 60.073 42.308 0.00 0.00 0.00 4.61
1473 1529 2.899303 ATCAAAACTGTAGGTGGGGG 57.101 50.000 0.00 0.00 0.00 5.40
1529 1585 0.321122 GGTCTGACCTGAGCTGGTTG 60.321 60.000 19.53 0.00 41.00 3.77
1585 1642 3.207474 CCTTGTTGAAGGCATTTCTCG 57.793 47.619 0.00 0.00 42.60 4.04
1586 1643 2.095059 CCTTGTTGAAGGCATTTCTCGG 60.095 50.000 0.00 0.00 42.60 4.63
1587 1644 2.559698 TGTTGAAGGCATTTCTCGGA 57.440 45.000 0.00 0.00 36.71 4.55
1588 1645 2.426522 TGTTGAAGGCATTTCTCGGAG 58.573 47.619 0.00 0.00 36.71 4.63
1589 1646 2.038426 TGTTGAAGGCATTTCTCGGAGA 59.962 45.455 2.97 2.97 36.71 3.71
1590 1647 3.274288 GTTGAAGGCATTTCTCGGAGAT 58.726 45.455 8.81 0.00 36.71 2.75
1591 1648 2.910199 TGAAGGCATTTCTCGGAGATG 58.090 47.619 8.81 6.40 36.71 2.90
1592 1649 2.501316 TGAAGGCATTTCTCGGAGATGA 59.499 45.455 8.81 1.31 36.71 2.92
1631 1698 4.018415 AGGCTAAAAACCTAGATTCTGGCA 60.018 41.667 0.00 0.00 35.10 4.92
1636 1703 2.355010 ACCTAGATTCTGGCATTGGC 57.645 50.000 2.73 2.73 40.13 4.52
1662 1732 0.390866 ATCCGATGATGGCGATGCTC 60.391 55.000 0.00 0.00 0.00 4.26
1706 1776 2.096819 GCGTTGTTGTTGAAGAACCTCA 59.903 45.455 2.62 0.00 32.86 3.86
1713 1784 4.687901 TGTTGAAGAACCTCACATCTGA 57.312 40.909 0.00 0.00 0.00 3.27
1720 1791 0.979665 ACCTCACATCTGAGTGGTGG 59.020 55.000 0.00 10.48 42.36 4.61
1743 1814 2.036764 GAGCTGGTTTGCGCGGATAC 62.037 60.000 12.50 12.50 38.13 2.24
1776 1847 2.843701 AGTTTGCCGATCATGGATCTC 58.156 47.619 4.86 0.00 36.96 2.75
1787 1858 2.171237 TCATGGATCTCATCGCTTTGGT 59.829 45.455 0.00 0.00 32.92 3.67
1841 1913 9.937175 GTTTTGGTCTTATATGACTTTGCTATC 57.063 33.333 15.98 1.19 37.16 2.08
1913 1987 1.399714 CTATGCAGAGGTCGGGTGTA 58.600 55.000 0.00 0.00 0.00 2.90
2004 2078 8.655935 AAAGGTGGAGAACTTTTATGATCAAT 57.344 30.769 0.00 0.00 36.39 2.57
2021 2095 6.228995 TGATCAATAGAGGAATGACTCATGC 58.771 40.000 0.00 0.00 39.97 4.06
2023 2097 4.409901 TCAATAGAGGAATGACTCATGCCA 59.590 41.667 17.34 0.00 41.96 4.92
2024 2098 5.072736 TCAATAGAGGAATGACTCATGCCAT 59.927 40.000 17.34 8.53 41.96 4.40
2025 2099 3.947612 AGAGGAATGACTCATGCCATT 57.052 42.857 17.34 3.11 41.96 3.16
2105 2198 1.135944 GCTGCTAGGTTGAAAGTTCGC 60.136 52.381 0.00 0.00 0.00 4.70
2126 2219 3.190535 GCGGTGTTTGTGAAATGGTATCT 59.809 43.478 0.00 0.00 0.00 1.98
2130 2223 6.072948 CGGTGTTTGTGAAATGGTATCTTGTA 60.073 38.462 0.00 0.00 0.00 2.41
2145 2238 3.804036 TCTTGTAATATCCGTTGCCCAG 58.196 45.455 0.00 0.00 0.00 4.45
2153 2246 2.741985 CGTTGCCCAGTGATGCGA 60.742 61.111 0.00 0.00 0.00 5.10
2160 2253 1.474077 GCCCAGTGATGCGATTCTTTT 59.526 47.619 0.00 0.00 0.00 2.27
2273 2368 7.770433 TGTTTTGAAGGTCCTCATGATATACTG 59.230 37.037 0.00 0.00 0.00 2.74
2337 2432 7.027778 ACACCAATTCACTTAGTTGAGTTTC 57.972 36.000 0.00 0.00 0.00 2.78
2340 2435 6.317893 ACCAATTCACTTAGTTGAGTTTCGTT 59.682 34.615 0.00 0.00 0.00 3.85
2343 2438 6.730960 TTCACTTAGTTGAGTTTCGTTTGT 57.269 33.333 0.00 0.00 0.00 2.83
2348 2443 7.634817 CACTTAGTTGAGTTTCGTTTGTAAGTG 59.365 37.037 0.00 0.00 38.75 3.16
2349 2444 4.905269 AGTTGAGTTTCGTTTGTAAGTGC 58.095 39.130 0.00 0.00 0.00 4.40
2389 2484 7.068839 TGGGAACAGTGCTGAAAGTTTATAAAA 59.931 33.333 6.17 0.00 32.98 1.52
2390 2485 8.088365 GGGAACAGTGCTGAAAGTTTATAAAAT 58.912 33.333 6.17 0.00 35.30 1.82
2420 2516 6.659242 CACATTGGTCCTGTAAGAACCTTTAT 59.341 38.462 0.00 0.00 34.07 1.40
2421 2517 7.827236 CACATTGGTCCTGTAAGAACCTTTATA 59.173 37.037 0.00 0.00 34.07 0.98
2427 2523 8.890718 GGTCCTGTAAGAACCTTTATAATCAAC 58.109 37.037 0.00 0.00 34.07 3.18
2437 2533 8.628882 AACCTTTATAATCAACGCAATTTAGC 57.371 30.769 0.00 0.00 0.00 3.09
2481 2577 3.567164 CAGTCAAAGCTGTCTTGTGGATT 59.433 43.478 0.00 0.00 31.78 3.01
2491 2587 5.241728 GCTGTCTTGTGGATTTACTCCTTTT 59.758 40.000 0.00 0.00 45.21 2.27
2500 2596 9.983024 TGTGGATTTACTCCTTTTTGGATATAA 57.017 29.630 0.00 0.00 45.16 0.98
2510 2606 7.771183 TCCTTTTTGGATATAATTCTGTGTGC 58.229 34.615 0.00 0.00 40.56 4.57
2520 2616 0.764271 TTCTGTGTGCATGAGACCCA 59.236 50.000 0.00 0.00 0.00 4.51
2531 2627 1.748122 GAGACCCACATGCTGGCTG 60.748 63.158 8.37 0.00 39.01 4.85
2662 2759 7.778470 TGTTTAATTTTGGTGTGATTTGTCC 57.222 32.000 0.00 0.00 0.00 4.02
2663 2760 6.477033 TGTTTAATTTTGGTGTGATTTGTCCG 59.523 34.615 0.00 0.00 0.00 4.79
2676 2773 7.543172 GTGTGATTTGTCCGTGTACTCTATTTA 59.457 37.037 0.00 0.00 0.00 1.40
2678 2775 8.592998 GTGATTTGTCCGTGTACTCTATTTAAG 58.407 37.037 0.00 0.00 0.00 1.85
2682 2779 6.624423 TGTCCGTGTACTCTATTTAAGTTCC 58.376 40.000 0.00 0.00 0.00 3.62
2683 2780 6.435277 TGTCCGTGTACTCTATTTAAGTTCCT 59.565 38.462 0.00 0.00 0.00 3.36
2692 2789 5.985911 TCTATTTAAGTTCCTAGTGTGGCC 58.014 41.667 0.00 0.00 0.00 5.36
2695 2792 1.372501 AAGTTCCTAGTGTGGCCCAT 58.627 50.000 0.00 0.00 0.00 4.00
2743 3153 2.317040 CTAGCTATTTCGGGAGGTCCA 58.683 52.381 0.00 0.00 37.91 4.02
2744 3154 1.807814 AGCTATTTCGGGAGGTCCAT 58.192 50.000 0.00 0.00 37.91 3.41
2762 3172 4.880696 GTCCATTTCTCAAGATTCTGGGAG 59.119 45.833 8.59 8.59 0.00 4.30
2812 3223 8.239038 TCTCTTCTGGTAGTATATGAGTTTGG 57.761 38.462 0.00 0.00 0.00 3.28
2820 3240 8.491134 TGGTAGTATATGAGTTTGGCACTATTT 58.509 33.333 0.00 0.00 35.01 1.40
2828 3248 7.517614 TGAGTTTGGCACTATTTGACATTTA 57.482 32.000 0.00 0.00 45.38 1.40
2838 3258 8.023128 GCACTATTTGACATTTACATGAGTTGT 58.977 33.333 0.00 0.00 42.62 3.32
2892 3320 1.471684 CTCATGCTTCTCTTTGTGGCC 59.528 52.381 0.00 0.00 0.00 5.36
2958 3386 5.938125 TCTATTCTTTTGCCCACTCACTTAC 59.062 40.000 0.00 0.00 0.00 2.34
3118 3548 4.536765 TCATCATAGGCACTGTCAGAGTA 58.463 43.478 6.91 0.00 41.52 2.59
3173 3603 8.870116 ACTGTCTGCCCTTCTTTATTTAAAATT 58.130 29.630 0.00 0.00 0.00 1.82
3174 3604 9.143631 CTGTCTGCCCTTCTTTATTTAAAATTG 57.856 33.333 0.00 0.00 0.00 2.32
3304 3734 3.186119 CGACAGGTGCAATGTTTGTTTT 58.814 40.909 7.22 0.00 0.00 2.43
3334 3764 8.526667 TGTGCTAGAGACTAATTCTATGAAGT 57.473 34.615 0.00 0.00 33.22 3.01
3336 3766 9.458374 GTGCTAGAGACTAATTCTATGAAGTTC 57.542 37.037 0.00 0.00 33.22 3.01
3419 3849 5.643379 TGGGAATCTTGCTTGTTTATGAC 57.357 39.130 0.00 0.00 0.00 3.06
3428 3858 2.159881 GCTTGTTTATGACGTCACGGAC 60.160 50.000 22.71 18.50 0.00 4.79
3489 3919 7.671302 TCTTCAAGCTTCAGTGTAGATAACTT 58.329 34.615 0.00 0.00 0.00 2.66
3676 4111 5.071115 GGCATCCTCCCTCTATATGTTATCC 59.929 48.000 0.00 0.00 0.00 2.59
3732 4169 7.390162 TGCATCACATTCTAGAAATGTACACAA 59.610 33.333 9.71 0.00 38.69 3.33
3740 4177 8.684386 TTCTAGAAATGTACACAATTCAACCA 57.316 30.769 16.00 2.98 38.03 3.67
3741 4178 8.684386 TCTAGAAATGTACACAATTCAACCAA 57.316 30.769 16.00 0.56 38.03 3.67
3742 4179 9.295825 TCTAGAAATGTACACAATTCAACCAAT 57.704 29.630 16.00 2.40 38.03 3.16
3745 4182 9.077885 AGAAATGTACACAATTCAACCAATACT 57.922 29.630 16.00 0.00 38.03 2.12
3746 4183 9.341899 GAAATGTACACAATTCAACCAATACTC 57.658 33.333 0.00 0.00 36.17 2.59
3747 4184 6.811253 TGTACACAATTCAACCAATACTCC 57.189 37.500 0.00 0.00 0.00 3.85
3748 4185 5.708230 TGTACACAATTCAACCAATACTCCC 59.292 40.000 0.00 0.00 0.00 4.30
3749 4186 4.998051 ACACAATTCAACCAATACTCCCT 58.002 39.130 0.00 0.00 0.00 4.20
3750 4187 5.010282 ACACAATTCAACCAATACTCCCTC 58.990 41.667 0.00 0.00 0.00 4.30
3751 4188 4.399303 CACAATTCAACCAATACTCCCTCC 59.601 45.833 0.00 0.00 0.00 4.30
3752 4189 3.560636 ATTCAACCAATACTCCCTCCG 57.439 47.619 0.00 0.00 0.00 4.63
3753 4190 1.946984 TCAACCAATACTCCCTCCGT 58.053 50.000 0.00 0.00 0.00 4.69
3754 4191 1.829222 TCAACCAATACTCCCTCCGTC 59.171 52.381 0.00 0.00 0.00 4.79
3755 4192 1.134491 CAACCAATACTCCCTCCGTCC 60.134 57.143 0.00 0.00 0.00 4.79
3756 4193 0.338814 ACCAATACTCCCTCCGTCCT 59.661 55.000 0.00 0.00 0.00 3.85
3757 4194 1.273666 ACCAATACTCCCTCCGTCCTT 60.274 52.381 0.00 0.00 0.00 3.36
3758 4195 1.838077 CCAATACTCCCTCCGTCCTTT 59.162 52.381 0.00 0.00 0.00 3.11
3759 4196 3.036091 CCAATACTCCCTCCGTCCTTTA 58.964 50.000 0.00 0.00 0.00 1.85
3760 4197 3.453353 CCAATACTCCCTCCGTCCTTTAA 59.547 47.826 0.00 0.00 0.00 1.52
3761 4198 4.080751 CCAATACTCCCTCCGTCCTTTAAA 60.081 45.833 0.00 0.00 0.00 1.52
3762 4199 5.116882 CAATACTCCCTCCGTCCTTTAAAG 58.883 45.833 8.32 8.32 0.00 1.85
3763 4200 2.898662 ACTCCCTCCGTCCTTTAAAGA 58.101 47.619 16.98 0.24 0.00 2.52
3764 4201 2.832733 ACTCCCTCCGTCCTTTAAAGAG 59.167 50.000 16.98 7.03 0.00 2.85
3765 4202 2.832733 CTCCCTCCGTCCTTTAAAGAGT 59.167 50.000 16.98 0.00 0.00 3.24
3766 4203 2.565834 TCCCTCCGTCCTTTAAAGAGTG 59.434 50.000 16.98 5.33 0.00 3.51
3767 4204 2.302157 CCCTCCGTCCTTTAAAGAGTGT 59.698 50.000 16.98 0.00 0.00 3.55
3768 4205 3.512724 CCCTCCGTCCTTTAAAGAGTGTA 59.487 47.826 16.98 0.00 0.00 2.90
3769 4206 4.492611 CCTCCGTCCTTTAAAGAGTGTAC 58.507 47.826 16.98 5.84 0.00 2.90
3770 4207 4.220163 CCTCCGTCCTTTAAAGAGTGTACT 59.780 45.833 16.98 0.00 0.00 2.73
3771 4208 5.279356 CCTCCGTCCTTTAAAGAGTGTACTT 60.279 44.000 16.98 0.00 0.00 2.24
3772 4209 5.776744 TCCGTCCTTTAAAGAGTGTACTTC 58.223 41.667 16.98 0.00 0.00 3.01
3773 4210 4.928020 CCGTCCTTTAAAGAGTGTACTTCC 59.072 45.833 16.98 0.00 0.00 3.46
3774 4211 5.279356 CCGTCCTTTAAAGAGTGTACTTCCT 60.279 44.000 16.98 0.00 0.00 3.36
3775 4212 6.071728 CCGTCCTTTAAAGAGTGTACTTCCTA 60.072 42.308 16.98 0.00 0.00 2.94
3776 4213 6.805760 CGTCCTTTAAAGAGTGTACTTCCTAC 59.194 42.308 16.98 0.00 0.00 3.18
3777 4214 7.309073 CGTCCTTTAAAGAGTGTACTTCCTACT 60.309 40.741 16.98 0.00 0.00 2.57
3778 4215 8.366401 GTCCTTTAAAGAGTGTACTTCCTACTT 58.634 37.037 16.98 0.00 0.00 2.24
3779 4216 8.931568 TCCTTTAAAGAGTGTACTTCCTACTTT 58.068 33.333 16.98 0.00 0.00 2.66
3780 4217 8.989980 CCTTTAAAGAGTGTACTTCCTACTTTG 58.010 37.037 16.98 0.00 0.00 2.77
3781 4218 9.543783 CTTTAAAGAGTGTACTTCCTACTTTGT 57.456 33.333 9.77 0.00 0.00 2.83
3782 4219 9.895138 TTTAAAGAGTGTACTTCCTACTTTGTT 57.105 29.630 0.00 0.00 0.00 2.83
3783 4220 7.787725 AAAGAGTGTACTTCCTACTTTGTTG 57.212 36.000 0.00 0.00 0.00 3.33
3784 4221 5.855045 AGAGTGTACTTCCTACTTTGTTGG 58.145 41.667 0.00 0.00 0.00 3.77
3785 4222 5.601313 AGAGTGTACTTCCTACTTTGTTGGA 59.399 40.000 0.00 0.00 35.84 3.53
3786 4223 5.855045 AGTGTACTTCCTACTTTGTTGGAG 58.145 41.667 0.00 0.62 38.51 3.86
3787 4224 4.995487 GTGTACTTCCTACTTTGTTGGAGG 59.005 45.833 8.25 8.25 38.51 4.30
3788 4225 3.790089 ACTTCCTACTTTGTTGGAGGG 57.210 47.619 12.77 7.86 38.40 4.30
3789 4226 3.053826 ACTTCCTACTTTGTTGGAGGGT 58.946 45.455 12.77 8.33 38.40 4.34
3790 4227 3.072622 ACTTCCTACTTTGTTGGAGGGTC 59.927 47.826 12.77 0.00 38.40 4.46
3791 4228 2.696775 TCCTACTTTGTTGGAGGGTCA 58.303 47.619 0.00 0.00 33.01 4.02
3792 4229 3.050089 TCCTACTTTGTTGGAGGGTCAA 58.950 45.455 0.00 0.00 33.01 3.18
3793 4230 3.072476 TCCTACTTTGTTGGAGGGTCAAG 59.928 47.826 0.00 0.00 33.01 3.02
3794 4231 3.181443 CCTACTTTGTTGGAGGGTCAAGT 60.181 47.826 0.00 0.00 30.33 3.16
3795 4232 3.382083 ACTTTGTTGGAGGGTCAAGTT 57.618 42.857 0.00 0.00 0.00 2.66
3796 4233 3.708451 ACTTTGTTGGAGGGTCAAGTTT 58.292 40.909 0.00 0.00 0.00 2.66
3797 4234 3.447229 ACTTTGTTGGAGGGTCAAGTTTG 59.553 43.478 0.00 0.00 0.00 2.93
3798 4235 3.374042 TTGTTGGAGGGTCAAGTTTGA 57.626 42.857 0.00 0.00 34.20 2.69
3810 4247 2.096819 TCAAGTTTGACCGAGTTTGTGC 59.903 45.455 0.00 0.00 31.01 4.57
3811 4248 1.745232 AGTTTGACCGAGTTTGTGCA 58.255 45.000 0.00 0.00 0.00 4.57
3812 4249 2.088423 AGTTTGACCGAGTTTGTGCAA 58.912 42.857 0.00 0.00 0.00 4.08
3813 4250 2.490115 AGTTTGACCGAGTTTGTGCAAA 59.510 40.909 0.00 0.00 0.00 3.68
3814 4251 3.057174 AGTTTGACCGAGTTTGTGCAAAA 60.057 39.130 0.00 0.00 31.33 2.44
3815 4252 3.577649 TTGACCGAGTTTGTGCAAAAA 57.422 38.095 0.00 0.00 31.33 1.94
3816 4253 3.791973 TGACCGAGTTTGTGCAAAAAT 57.208 38.095 5.11 0.00 31.33 1.82
3817 4254 4.902443 TGACCGAGTTTGTGCAAAAATA 57.098 36.364 5.11 0.00 31.33 1.40
3818 4255 5.446143 TGACCGAGTTTGTGCAAAAATAT 57.554 34.783 5.11 0.00 31.33 1.28
3819 4256 6.561737 TGACCGAGTTTGTGCAAAAATATA 57.438 33.333 5.11 0.00 31.33 0.86
3820 4257 7.151999 TGACCGAGTTTGTGCAAAAATATAT 57.848 32.000 5.11 0.00 31.33 0.86
3821 4258 7.247728 TGACCGAGTTTGTGCAAAAATATATC 58.752 34.615 5.11 1.66 31.33 1.63
3822 4259 7.094592 TGACCGAGTTTGTGCAAAAATATATCA 60.095 33.333 5.11 4.10 31.33 2.15
3823 4260 7.598278 ACCGAGTTTGTGCAAAAATATATCAA 58.402 30.769 5.11 0.00 31.33 2.57
3824 4261 8.250332 ACCGAGTTTGTGCAAAAATATATCAAT 58.750 29.630 5.11 0.00 31.33 2.57
3825 4262 8.533965 CCGAGTTTGTGCAAAAATATATCAATG 58.466 33.333 5.11 0.00 31.33 2.82
3826 4263 9.075519 CGAGTTTGTGCAAAAATATATCAATGT 57.924 29.630 5.11 0.00 31.33 2.71
3917 4354 7.766219 GACATAAATGTCGGTGTACTATTGT 57.234 36.000 7.31 0.00 46.46 2.71
3918 4355 8.861033 GACATAAATGTCGGTGTACTATTGTA 57.139 34.615 7.31 0.00 46.46 2.41
3919 4356 8.638685 ACATAAATGTCGGTGTACTATTGTAC 57.361 34.615 10.11 10.11 42.04 2.90
3920 4357 8.252417 ACATAAATGTCGGTGTACTATTGTACA 58.748 33.333 14.93 14.93 45.49 2.90
3964 4401 5.778161 GTTTGACTTTCCAACAAACTTGG 57.222 39.130 0.00 0.00 45.24 3.61
3965 4402 5.474825 GTTTGACTTTCCAACAAACTTGGA 58.525 37.500 0.00 0.27 45.24 3.53
3973 4410 4.850680 TCCAACAAACTTGGAAGTACACT 58.149 39.130 0.00 0.00 44.90 3.55
3974 4411 4.879545 TCCAACAAACTTGGAAGTACACTC 59.120 41.667 0.00 0.00 44.90 3.51
3975 4412 4.881850 CCAACAAACTTGGAAGTACACTCT 59.118 41.667 0.00 0.00 42.06 3.24
3976 4413 5.357032 CCAACAAACTTGGAAGTACACTCTT 59.643 40.000 0.00 0.00 42.06 2.85
3977 4414 6.127730 CCAACAAACTTGGAAGTACACTCTTT 60.128 38.462 0.00 0.00 42.06 2.52
3978 4415 6.679327 ACAAACTTGGAAGTACACTCTTTC 57.321 37.500 0.00 0.00 38.57 2.62
3979 4416 6.177610 ACAAACTTGGAAGTACACTCTTTCA 58.822 36.000 0.00 0.00 38.57 2.69
3980 4417 6.657541 ACAAACTTGGAAGTACACTCTTTCAA 59.342 34.615 0.00 0.00 39.65 2.69
3983 4420 5.623956 TTGGAAGTACACTCTTTCAAGGA 57.376 39.130 0.00 0.00 37.81 3.36
3984 4421 4.957296 TGGAAGTACACTCTTTCAAGGAC 58.043 43.478 0.00 0.00 30.93 3.85
3985 4422 3.988517 GGAAGTACACTCTTTCAAGGACG 59.011 47.826 0.00 0.00 0.00 4.79
3986 4423 3.662247 AGTACACTCTTTCAAGGACGG 57.338 47.619 0.00 0.00 0.00 4.79
3987 4424 3.228453 AGTACACTCTTTCAAGGACGGA 58.772 45.455 0.00 0.00 0.00 4.69
3988 4425 2.821991 ACACTCTTTCAAGGACGGAG 57.178 50.000 0.00 0.00 0.00 4.63
3989 4426 1.344763 ACACTCTTTCAAGGACGGAGG 59.655 52.381 0.00 0.00 0.00 4.30
3990 4427 0.977395 ACTCTTTCAAGGACGGAGGG 59.023 55.000 0.00 0.00 0.00 4.30
3991 4428 1.267121 CTCTTTCAAGGACGGAGGGA 58.733 55.000 0.00 0.00 0.00 4.20
3992 4429 1.205893 CTCTTTCAAGGACGGAGGGAG 59.794 57.143 0.00 0.00 0.00 4.30
4003 4440 1.687123 ACGGAGGGAGTATGCATGTAC 59.313 52.381 10.16 0.00 0.00 2.90
4038 4475 6.375830 GCCCTCCTTATTAGGCTACTTATT 57.624 41.667 0.00 0.00 42.34 1.40
4075 4513 6.712998 TGTGTCTAACAAATGGCTAGCTAAAA 59.287 34.615 15.72 0.00 35.24 1.52
4087 4525 5.664006 TGGCTAGCTAAAAGTAGGGTTATGA 59.336 40.000 15.72 0.00 0.00 2.15
4158 4797 8.253867 ACATGCATTCAGGAACCAAATATAAT 57.746 30.769 0.00 0.00 0.00 1.28
4163 4802 7.170320 GCATTCAGGAACCAAATATAATTGCAG 59.830 37.037 0.00 0.00 0.00 4.41
4193 4832 8.652290 GGAATGGATGGAGTAATACTTAGAAGT 58.348 37.037 0.00 0.00 42.91 3.01
4202 4842 9.074443 GGAGTAATACTTAGAAGTTTCTTCGTG 57.926 37.037 0.00 2.35 40.37 4.35
4294 4934 1.168714 CAAAGGGACAAGCACTAGCC 58.831 55.000 0.00 0.00 43.56 3.93
4348 4988 4.535526 AAGTTGTTGTGCTGAAGGTTTT 57.464 36.364 0.00 0.00 0.00 2.43
4393 5033 5.376854 TCTTCAATTTTACCTTCTGCTGC 57.623 39.130 0.00 0.00 0.00 5.25
4656 5296 0.462225 CTGCTGTGGCTCATGAGGAG 60.462 60.000 23.89 4.73 46.93 3.69
4768 5409 6.874134 AGATGACTATGTTGTGGTTGTTCTAC 59.126 38.462 0.00 0.00 0.00 2.59
4857 5498 3.195396 GGGGTGATTGCATGTTGTATTGT 59.805 43.478 0.00 0.00 0.00 2.71
4979 5620 3.361053 CGTCGTGCTACACTTTAGTTGAG 59.639 47.826 0.00 0.00 31.34 3.02
4982 5623 3.428870 CGTGCTACACTTTAGTTGAGTGG 59.571 47.826 8.86 0.00 46.77 4.00
5054 5695 1.594331 GCCATCCTTCGGTGGATAAC 58.406 55.000 9.22 2.78 44.38 1.89
5118 5759 6.311735 AGGAAGTTAATTTGAGCACCCTTTA 58.688 36.000 0.00 0.00 0.00 1.85
5119 5760 6.780522 AGGAAGTTAATTTGAGCACCCTTTAA 59.219 34.615 0.00 0.00 0.00 1.52
5120 5761 6.866770 GGAAGTTAATTTGAGCACCCTTTAAC 59.133 38.462 0.00 0.00 32.43 2.01
5180 5821 7.434492 CAGTAATATTGTACTTCCTCCGTCAT 58.566 38.462 0.00 0.00 31.78 3.06
5193 5834 6.340962 TCCTCCGTCATATATTGGTTGTAG 57.659 41.667 0.00 0.00 0.00 2.74
5226 5867 0.659427 TATGGGACGAAGCGAGTACG 59.341 55.000 0.00 0.00 42.93 3.67
5239 5880 1.333791 CGAGTACGATGCATACTGCGA 60.334 52.381 11.94 0.00 43.98 5.10
5298 5939 3.764237 TGGTGGGTAGAGTTTGTCTTC 57.236 47.619 0.00 0.00 36.64 2.87
5305 5946 4.095483 GGGTAGAGTTTGTCTTCGATCGTA 59.905 45.833 15.94 4.34 36.64 3.43
5332 5973 4.890158 AAAAATGACCACCTGAAATCCC 57.110 40.909 0.00 0.00 0.00 3.85
5341 5982 2.620115 CACCTGAAATCCCGAATGATGG 59.380 50.000 0.00 0.00 0.00 3.51
5404 6045 8.391106 GCTGTAGACCTTGTTTTGTTCTATATG 58.609 37.037 0.00 0.00 0.00 1.78
5473 6114 7.461416 CGTCTTTGAACTGTTGAATGTTTGTTC 60.461 37.037 0.00 0.00 35.68 3.18
5480 6121 3.450457 TGTTGAATGTTTGTTCCCTTGCT 59.550 39.130 0.00 0.00 0.00 3.91
5489 6130 4.385358 TTGTTCCCTTGCTTTCAGTTTC 57.615 40.909 0.00 0.00 0.00 2.78
5492 6133 2.586425 TCCCTTGCTTTCAGTTTCCAG 58.414 47.619 0.00 0.00 0.00 3.86
5493 6134 1.000171 CCCTTGCTTTCAGTTTCCAGC 60.000 52.381 0.00 0.00 0.00 4.85
5494 6135 1.000171 CCTTGCTTTCAGTTTCCAGCC 60.000 52.381 0.00 0.00 0.00 4.85
5689 6330 8.184192 GTCATTTGACTTTCTGTTCTGAAGAAA 58.816 33.333 3.45 4.87 41.65 2.52
5690 6331 8.739039 TCATTTGACTTTCTGTTCTGAAGAAAA 58.261 29.630 6.13 0.00 41.74 2.29
5691 6332 9.525409 CATTTGACTTTCTGTTCTGAAGAAAAT 57.475 29.630 6.13 0.00 41.74 1.82
5692 6333 8.915871 TTTGACTTTCTGTTCTGAAGAAAATG 57.084 30.769 6.13 0.00 41.74 2.32
5693 6334 6.498304 TGACTTTCTGTTCTGAAGAAAATGC 58.502 36.000 6.13 1.13 41.74 3.56
5694 6335 6.319658 TGACTTTCTGTTCTGAAGAAAATGCT 59.680 34.615 6.13 0.00 41.74 3.79
5695 6336 7.498900 TGACTTTCTGTTCTGAAGAAAATGCTA 59.501 33.333 6.13 0.00 41.74 3.49
5696 6337 7.869800 ACTTTCTGTTCTGAAGAAAATGCTAG 58.130 34.615 6.13 0.00 41.74 3.42
5697 6338 5.869753 TCTGTTCTGAAGAAAATGCTAGC 57.130 39.130 8.10 8.10 35.58 3.42
5698 6339 4.697352 TCTGTTCTGAAGAAAATGCTAGCC 59.303 41.667 13.29 0.00 35.58 3.93
5699 6340 4.655963 TGTTCTGAAGAAAATGCTAGCCT 58.344 39.130 13.29 0.00 35.58 4.58
5700 6341 5.072741 TGTTCTGAAGAAAATGCTAGCCTT 58.927 37.500 13.29 5.73 35.58 4.35
5701 6342 5.182001 TGTTCTGAAGAAAATGCTAGCCTTC 59.818 40.000 18.41 18.41 35.58 3.46
5702 6343 4.910195 TCTGAAGAAAATGCTAGCCTTCA 58.090 39.130 23.40 23.40 40.33 3.02
5703 6344 5.503927 TCTGAAGAAAATGCTAGCCTTCAT 58.496 37.500 24.44 13.56 41.31 2.57
5704 6345 5.948162 TCTGAAGAAAATGCTAGCCTTCATT 59.052 36.000 24.44 11.64 41.31 2.57
5705 6346 5.957798 TGAAGAAAATGCTAGCCTTCATTG 58.042 37.500 21.99 0.00 38.49 2.82
5706 6347 4.996788 AGAAAATGCTAGCCTTCATTGG 57.003 40.909 13.29 0.00 33.61 3.16
5716 6357 2.205022 CCTTCATTGGCAGGAACAGA 57.795 50.000 0.20 0.00 30.81 3.41
5717 6358 2.517959 CCTTCATTGGCAGGAACAGAA 58.482 47.619 0.20 0.00 30.81 3.02
5718 6359 2.892852 CCTTCATTGGCAGGAACAGAAA 59.107 45.455 0.20 0.00 30.81 2.52
5719 6360 3.305608 CCTTCATTGGCAGGAACAGAAAC 60.306 47.826 0.20 0.00 30.81 2.78
5720 6361 3.228188 TCATTGGCAGGAACAGAAACT 57.772 42.857 0.00 0.00 0.00 2.66
5721 6362 3.565307 TCATTGGCAGGAACAGAAACTT 58.435 40.909 0.00 0.00 0.00 2.66
5722 6363 3.960102 TCATTGGCAGGAACAGAAACTTT 59.040 39.130 0.00 0.00 0.00 2.66
5723 6364 5.136828 TCATTGGCAGGAACAGAAACTTTA 58.863 37.500 0.00 0.00 0.00 1.85
5724 6365 5.774690 TCATTGGCAGGAACAGAAACTTTAT 59.225 36.000 0.00 0.00 0.00 1.40
5725 6366 5.452078 TTGGCAGGAACAGAAACTTTATG 57.548 39.130 0.00 0.00 0.00 1.90
5726 6367 4.724399 TGGCAGGAACAGAAACTTTATGA 58.276 39.130 3.14 0.00 0.00 2.15
5727 6368 5.136828 TGGCAGGAACAGAAACTTTATGAA 58.863 37.500 3.14 0.00 0.00 2.57
5728 6369 5.774690 TGGCAGGAACAGAAACTTTATGAAT 59.225 36.000 3.14 0.00 0.00 2.57
5729 6370 6.945435 TGGCAGGAACAGAAACTTTATGAATA 59.055 34.615 3.14 0.00 0.00 1.75
5730 6371 7.615365 TGGCAGGAACAGAAACTTTATGAATAT 59.385 33.333 3.14 0.00 0.00 1.28
5731 6372 8.470002 GGCAGGAACAGAAACTTTATGAATATT 58.530 33.333 3.14 0.00 0.00 1.28
5732 6373 9.294030 GCAGGAACAGAAACTTTATGAATATTG 57.706 33.333 3.14 0.00 0.00 1.90
5738 6379 9.846248 ACAGAAACTTTATGAATATTGACTTGC 57.154 29.630 3.14 0.00 0.00 4.01
5739 6380 9.294030 CAGAAACTTTATGAATATTGACTTGCC 57.706 33.333 0.00 0.00 0.00 4.52
5740 6381 8.184192 AGAAACTTTATGAATATTGACTTGCCG 58.816 33.333 0.00 0.00 0.00 5.69
5741 6382 7.624360 AACTTTATGAATATTGACTTGCCGA 57.376 32.000 0.00 0.00 0.00 5.54
5742 6383 7.624360 ACTTTATGAATATTGACTTGCCGAA 57.376 32.000 0.00 0.00 0.00 4.30
5743 6384 8.050778 ACTTTATGAATATTGACTTGCCGAAA 57.949 30.769 0.00 0.00 0.00 3.46
5744 6385 7.968405 ACTTTATGAATATTGACTTGCCGAAAC 59.032 33.333 0.00 0.00 0.00 2.78
5745 6386 5.895636 ATGAATATTGACTTGCCGAAACA 57.104 34.783 0.00 0.00 0.00 2.83
5775 6416 5.983540 AGCCTTCATTAGTAGGAACAGAAG 58.016 41.667 0.00 0.00 34.44 2.85
5829 6470 6.640518 TGTTAGCCTTCATTAGTAGGAACAG 58.359 40.000 0.00 0.00 34.44 3.16
5875 6864 5.693104 ACTTTTCGAAATGAACAGCGTAGTA 59.307 36.000 25.41 0.57 37.81 1.82
5876 6865 6.201425 ACTTTTCGAAATGAACAGCGTAGTAA 59.799 34.615 25.41 0.00 37.81 2.24
5877 6866 5.756950 TTCGAAATGAACAGCGTAGTAAG 57.243 39.130 0.00 0.00 0.00 2.34
5878 6867 3.611113 TCGAAATGAACAGCGTAGTAAGC 59.389 43.478 0.00 0.00 0.00 3.09
5879 6868 3.366724 CGAAATGAACAGCGTAGTAAGCA 59.633 43.478 10.76 0.00 37.01 3.91
5880 6869 4.143200 CGAAATGAACAGCGTAGTAAGCAA 60.143 41.667 10.76 0.00 37.01 3.91
5886 6881 4.404507 ACAGCGTAGTAAGCAAACATTG 57.595 40.909 10.76 1.54 37.01 2.82
5893 6888 6.565247 GCGTAGTAAGCAAACATTGTTACACT 60.565 38.462 1.76 4.94 33.53 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.575589 TGTGTTTGATAGCTGTGTTTGAATAAT 58.424 29.630 0.00 0.00 0.00 1.28
3 4 7.935520 TGTGTTTGATAGCTGTGTTTGAATAA 58.064 30.769 0.00 0.00 0.00 1.40
4 5 7.503521 TGTGTTTGATAGCTGTGTTTGAATA 57.496 32.000 0.00 0.00 0.00 1.75
25 26 8.819974 AGCTTTTCTATTTTGTGTTCATTTGTG 58.180 29.630 0.00 0.00 0.00 3.33
74 75 5.301805 GGAAAAAGAGGTGAAGAAACCATCA 59.698 40.000 0.00 0.00 43.20 3.07
75 76 5.536538 AGGAAAAAGAGGTGAAGAAACCATC 59.463 40.000 0.00 0.00 43.20 3.51
138 141 1.293498 CCAACACCCTCTCTGTCGG 59.707 63.158 0.00 0.00 0.00 4.79
141 144 2.056906 GCACCCAACACCCTCTCTGT 62.057 60.000 0.00 0.00 0.00 3.41
158 161 2.422597 CTTGTAGATTGGGTTCACGCA 58.577 47.619 0.00 0.00 37.01 5.24
159 162 1.130561 GCTTGTAGATTGGGTTCACGC 59.869 52.381 0.00 0.00 0.00 5.34
161 164 2.159627 CGTGCTTGTAGATTGGGTTCAC 59.840 50.000 0.00 0.00 0.00 3.18
167 170 1.338674 TGGGTCGTGCTTGTAGATTGG 60.339 52.381 0.00 0.00 0.00 3.16
170 173 2.615493 CCTTTGGGTCGTGCTTGTAGAT 60.615 50.000 0.00 0.00 0.00 1.98
174 177 2.193536 GCCTTTGGGTCGTGCTTGT 61.194 57.895 0.00 0.00 34.45 3.16
184 187 1.152673 GCCTCTATGGGCCTTTGGG 60.153 63.158 4.53 0.00 45.92 4.12
197 200 3.327757 TCCTAGTTCATGTTGTTGCCTCT 59.672 43.478 0.00 0.00 0.00 3.69
211 214 3.736740 GCAGCTTAGCACTCTCCTAGTTC 60.737 52.174 7.07 0.00 35.76 3.01
222 225 3.098032 GCAAGTTGCAGCTTAGCAC 57.902 52.632 22.90 9.67 45.61 4.40
257 260 4.207165 ACTGGCAAGCTCACTTTTTAAGA 58.793 39.130 0.00 0.00 32.29 2.10
260 263 3.550820 TGACTGGCAAGCTCACTTTTTA 58.449 40.909 0.00 0.00 32.29 1.52
267 270 0.689055 AGTCATGACTGGCAAGCTCA 59.311 50.000 27.37 0.00 40.75 4.26
296 299 6.593382 AGAGCTTTTCACTATTCAGACATGAC 59.407 38.462 0.00 0.00 34.35 3.06
297 300 6.705302 AGAGCTTTTCACTATTCAGACATGA 58.295 36.000 0.00 0.00 0.00 3.07
323 327 5.125739 ACGGTGATGTTAGGTTTGTTTTGAA 59.874 36.000 0.00 0.00 0.00 2.69
324 328 4.641094 ACGGTGATGTTAGGTTTGTTTTGA 59.359 37.500 0.00 0.00 0.00 2.69
325 329 4.927422 ACGGTGATGTTAGGTTTGTTTTG 58.073 39.130 0.00 0.00 0.00 2.44
326 330 5.344884 CAACGGTGATGTTAGGTTTGTTTT 58.655 37.500 0.00 0.00 0.00 2.43
350 354 3.002862 TGATGTTGTCTTTTCGAAACGGG 59.997 43.478 10.79 4.33 0.00 5.28
352 356 3.966218 GGTGATGTTGTCTTTTCGAAACG 59.034 43.478 10.79 9.26 0.00 3.60
353 357 3.966218 CGGTGATGTTGTCTTTTCGAAAC 59.034 43.478 10.79 0.16 0.00 2.78
354 358 3.623960 ACGGTGATGTTGTCTTTTCGAAA 59.376 39.130 6.47 6.47 0.00 3.46
355 359 3.199677 ACGGTGATGTTGTCTTTTCGAA 58.800 40.909 0.00 0.00 0.00 3.71
356 360 2.828877 ACGGTGATGTTGTCTTTTCGA 58.171 42.857 0.00 0.00 0.00 3.71
357 361 3.288242 CAACGGTGATGTTGTCTTTTCG 58.712 45.455 0.00 0.00 43.28 3.46
379 383 1.024046 TGATTTGGCGGTGATGACGG 61.024 55.000 0.00 0.00 0.00 4.79
380 384 1.016627 ATGATTTGGCGGTGATGACG 58.983 50.000 0.00 0.00 0.00 4.35
381 385 1.534595 GCATGATTTGGCGGTGATGAC 60.535 52.381 0.00 0.00 0.00 3.06
382 386 0.740149 GCATGATTTGGCGGTGATGA 59.260 50.000 0.00 0.00 0.00 2.92
383 387 0.249155 GGCATGATTTGGCGGTGATG 60.249 55.000 0.00 0.00 41.53 3.07
384 388 2.118132 GGCATGATTTGGCGGTGAT 58.882 52.632 0.00 0.00 41.53 3.06
385 389 3.602103 GGCATGATTTGGCGGTGA 58.398 55.556 0.00 0.00 41.53 4.02
391 395 1.039233 AGGGCTTCGGCATGATTTGG 61.039 55.000 0.00 0.00 43.96 3.28
402 406 0.038159 AGTTCTCGTCAAGGGCTTCG 60.038 55.000 0.00 0.00 0.00 3.79
408 412 1.151668 CCAGCAAGTTCTCGTCAAGG 58.848 55.000 0.00 0.00 0.00 3.61
436 440 0.322456 CTGGAGGTTTTGGCGATGGA 60.322 55.000 0.00 0.00 0.00 3.41
440 444 1.896660 GCACTGGAGGTTTTGGCGA 60.897 57.895 0.00 0.00 0.00 5.54
441 445 1.856265 GAGCACTGGAGGTTTTGGCG 61.856 60.000 0.00 0.00 0.00 5.69
442 446 1.527433 GGAGCACTGGAGGTTTTGGC 61.527 60.000 0.00 0.00 0.00 4.52
451 455 2.037251 GCCGATAATAAGGAGCACTGGA 59.963 50.000 0.00 0.00 0.00 3.86
453 457 2.417719 GGCCGATAATAAGGAGCACTG 58.582 52.381 0.00 0.00 0.00 3.66
476 480 2.981977 TTTGTCCTGGTGCGGTCGTC 62.982 60.000 0.00 0.00 0.00 4.20
479 483 0.889186 ATGTTTGTCCTGGTGCGGTC 60.889 55.000 0.00 0.00 0.00 4.79
481 485 1.580942 CATGTTTGTCCTGGTGCGG 59.419 57.895 0.00 0.00 0.00 5.69
482 486 0.888736 TCCATGTTTGTCCTGGTGCG 60.889 55.000 0.00 0.00 34.22 5.34
483 487 1.000274 GTTCCATGTTTGTCCTGGTGC 60.000 52.381 0.00 0.00 34.22 5.01
487 491 1.266718 CACGGTTCCATGTTTGTCCTG 59.733 52.381 0.00 0.00 0.00 3.86
495 499 1.048601 ACAGTCTCACGGTTCCATGT 58.951 50.000 0.00 0.00 0.00 3.21
508 512 3.296854 TGATGGAGGCGTATAACAGTCT 58.703 45.455 0.00 0.00 0.00 3.24
525 529 1.593006 GGCGGTTACGTCTGAATGATG 59.407 52.381 0.00 0.00 42.51 3.07
527 531 0.108520 GGGCGGTTACGTCTGAATGA 60.109 55.000 0.00 0.00 45.74 2.57
532 536 1.161843 ATTTTGGGCGGTTACGTCTG 58.838 50.000 0.00 0.00 45.74 3.51
533 537 2.766345 TATTTTGGGCGGTTACGTCT 57.234 45.000 0.00 0.00 45.74 4.18
540 544 4.138487 TGTTTTGTTTATTTTGGGCGGT 57.862 36.364 0.00 0.00 0.00 5.68
580 584 8.139989 GCATGGATCAAGTTTTAGCATTTAGAT 58.860 33.333 0.00 0.00 0.00 1.98
581 585 7.340232 AGCATGGATCAAGTTTTAGCATTTAGA 59.660 33.333 0.00 0.00 0.00 2.10
582 586 7.486647 AGCATGGATCAAGTTTTAGCATTTAG 58.513 34.615 0.00 0.00 0.00 1.85
583 587 7.408756 AGCATGGATCAAGTTTTAGCATTTA 57.591 32.000 0.00 0.00 0.00 1.40
584 588 6.290294 AGCATGGATCAAGTTTTAGCATTT 57.710 33.333 0.00 0.00 0.00 2.32
585 589 5.927281 AGCATGGATCAAGTTTTAGCATT 57.073 34.783 0.00 0.00 0.00 3.56
626 630 3.878160 ACCAAAAGGCGAAGAAACAAA 57.122 38.095 0.00 0.00 0.00 2.83
629 633 3.430333 TGAACCAAAAGGCGAAGAAAC 57.570 42.857 0.00 0.00 0.00 2.78
661 665 4.785453 GCAGGTTCTGGCCTCCGG 62.785 72.222 3.32 0.00 36.58 5.14
714 718 0.395312 TGAGGGAGTTTTGGGTCGAC 59.605 55.000 7.13 7.13 0.00 4.20
800 818 0.034896 CGTAGGAACAGGGCTTGTGT 59.965 55.000 1.91 0.00 40.74 3.72
801 819 0.320374 TCGTAGGAACAGGGCTTGTG 59.680 55.000 1.91 0.00 40.74 3.33
802 820 1.276622 ATCGTAGGAACAGGGCTTGT 58.723 50.000 0.00 0.00 43.45 3.16
803 821 2.798499 CGTATCGTAGGAACAGGGCTTG 60.798 54.545 0.00 0.00 0.00 4.01
805 823 1.030457 CGTATCGTAGGAACAGGGCT 58.970 55.000 0.00 0.00 0.00 5.19
806 824 1.027357 TCGTATCGTAGGAACAGGGC 58.973 55.000 0.00 0.00 0.00 5.19
807 825 3.147629 AGATCGTATCGTAGGAACAGGG 58.852 50.000 0.00 0.00 0.00 4.45
853 881 2.504274 CGGGGAATCGAATCGGGGA 61.504 63.158 1.76 0.00 0.00 4.81
854 882 2.030562 CGGGGAATCGAATCGGGG 59.969 66.667 1.76 0.00 0.00 5.73
855 883 2.665185 GCGGGGAATCGAATCGGG 60.665 66.667 1.76 0.00 0.00 5.14
856 884 1.291877 GATGCGGGGAATCGAATCGG 61.292 60.000 1.76 0.00 35.75 4.18
889 917 3.311110 GAGTGTGGGGAGTGCCGA 61.311 66.667 0.00 0.00 33.83 5.54
928 961 2.187946 GAGGTGATCACAGGCGGG 59.812 66.667 26.47 0.00 0.00 6.13
966 1001 4.215742 CGATCCTACCGGCGGCAA 62.216 66.667 28.71 14.15 0.00 4.52
1170 1211 0.110192 GACGCAGCAAGCCAGTTTAC 60.110 55.000 0.00 0.00 41.38 2.01
1200 1250 1.280421 AGGCCAGATGACTTCCACTTC 59.720 52.381 5.01 0.00 0.00 3.01
1203 1253 0.393537 CCAGGCCAGATGACTTCCAC 60.394 60.000 5.01 0.00 0.00 4.02
1258 1311 3.013921 TGGAGCAAATTAAAGCTACCGG 58.986 45.455 0.00 0.00 41.09 5.28
1259 1312 3.938963 TCTGGAGCAAATTAAAGCTACCG 59.061 43.478 7.09 2.21 41.09 4.02
1281 1334 4.481072 AGACGTAGGCTATTACCAATCCT 58.519 43.478 0.00 0.00 0.00 3.24
1288 1341 5.857517 GTGATGCTTAGACGTAGGCTATTAC 59.142 44.000 0.00 0.00 32.46 1.89
1292 1345 3.315470 CAGTGATGCTTAGACGTAGGCTA 59.685 47.826 0.00 0.00 32.46 3.93
1299 1352 2.001812 ACAGCAGTGATGCTTAGACG 57.998 50.000 8.62 0.00 43.52 4.18
1330 1386 1.000171 GGTTACTTCCTCACGTCGGTT 60.000 52.381 0.00 0.00 0.00 4.44
1336 1392 3.119101 AGCATACTGGTTACTTCCTCACG 60.119 47.826 0.00 0.00 0.00 4.35
1347 1403 5.763876 AACTAAGGAAGAGCATACTGGTT 57.236 39.130 0.00 0.00 0.00 3.67
1385 1441 2.168521 CAGACGCTGAAATCCCTTCCTA 59.831 50.000 1.18 0.00 32.44 2.94
1441 1497 6.764877 ACAGTTTTGATTATATCGCCTACG 57.235 37.500 0.00 0.00 42.01 3.51
1460 1516 1.703513 GAAAACTCCCCCACCTACAGT 59.296 52.381 0.00 0.00 0.00 3.55
1471 1527 2.092882 CGCGACCGAGAAAACTCCC 61.093 63.158 0.00 0.00 36.29 4.30
1473 1529 4.546637 TCGCGACCGAGAAAACTC 57.453 55.556 3.71 0.00 38.82 3.01
1529 1585 0.748005 ACATCGCCATTGCCAGGTAC 60.748 55.000 0.00 0.00 0.00 3.34
1581 1638 2.863809 TCAATCCGATCATCTCCGAGA 58.136 47.619 0.00 0.00 0.00 4.04
1583 1640 3.829026 AGAATCAATCCGATCATCTCCGA 59.171 43.478 0.00 0.00 31.11 4.55
1584 1641 4.185467 AGAATCAATCCGATCATCTCCG 57.815 45.455 0.00 0.00 31.11 4.63
1585 1642 5.545588 TGAAGAATCAATCCGATCATCTCC 58.454 41.667 0.00 0.00 31.11 3.71
1586 1643 5.638657 CCTGAAGAATCAATCCGATCATCTC 59.361 44.000 0.00 0.00 34.49 2.75
1587 1644 5.549347 CCTGAAGAATCAATCCGATCATCT 58.451 41.667 0.00 0.00 34.49 2.90
1588 1645 4.153835 GCCTGAAGAATCAATCCGATCATC 59.846 45.833 0.00 0.00 34.49 2.92
1589 1646 4.070716 GCCTGAAGAATCAATCCGATCAT 58.929 43.478 0.00 0.00 34.49 2.45
1590 1647 3.135348 AGCCTGAAGAATCAATCCGATCA 59.865 43.478 0.00 0.00 34.49 2.92
1591 1648 3.737850 AGCCTGAAGAATCAATCCGATC 58.262 45.455 0.00 0.00 34.49 3.69
1592 1649 3.853355 AGCCTGAAGAATCAATCCGAT 57.147 42.857 0.00 0.00 34.49 4.18
1662 1732 1.613925 TCAAGAAGGGAGTGACACTCG 59.386 52.381 25.47 12.48 45.96 4.18
1706 1776 0.986527 TCATGCCACCACTCAGATGT 59.013 50.000 0.00 0.00 0.00 3.06
1713 1784 2.072874 AACCAGCTCATGCCACCACT 62.073 55.000 0.00 0.00 40.80 4.00
1720 1791 2.505557 GCGCAAACCAGCTCATGC 60.506 61.111 0.30 0.00 40.05 4.06
1743 1814 2.223021 CGGCAAACTACATCAATGACCG 60.223 50.000 0.00 0.00 0.00 4.79
1913 1987 4.080863 AGAGGATACAAACCGAAAGAGCAT 60.081 41.667 0.00 0.00 41.41 3.79
1997 2071 6.228995 GCATGAGTCATTCCTCTATTGATCA 58.771 40.000 1.86 0.00 32.50 2.92
2105 2198 5.153513 CAAGATACCATTTCACAAACACCG 58.846 41.667 0.00 0.00 0.00 4.94
2126 2219 3.055021 TCACTGGGCAACGGATATTACAA 60.055 43.478 0.00 0.00 37.60 2.41
2130 2223 2.575532 CATCACTGGGCAACGGATATT 58.424 47.619 0.00 0.00 37.60 1.28
2145 2238 6.260377 TCAATCATGAAAAGAATCGCATCAC 58.740 36.000 0.00 0.00 30.99 3.06
2153 2246 7.787623 AGGTTCCTTCAATCATGAAAAGAAT 57.212 32.000 14.22 0.00 44.64 2.40
2160 2253 6.373005 TCTACAAGGTTCCTTCAATCATGA 57.627 37.500 0.00 0.00 0.00 3.07
2273 2368 0.742635 GTCTGACAGCAAGCTAGCCC 60.743 60.000 12.13 0.00 34.23 5.19
2337 2432 1.591158 AGTCACACGCACTTACAAACG 59.409 47.619 0.00 0.00 0.00 3.60
2340 2435 2.588027 TCAGTCACACGCACTTACAA 57.412 45.000 0.00 0.00 0.00 2.41
2343 2438 3.249799 CCATTTTCAGTCACACGCACTTA 59.750 43.478 0.00 0.00 0.00 2.24
2348 2443 1.234821 TCCCATTTTCAGTCACACGC 58.765 50.000 0.00 0.00 0.00 5.34
2349 2444 2.616376 TGTTCCCATTTTCAGTCACACG 59.384 45.455 0.00 0.00 0.00 4.49
2389 2484 7.039993 GGTTCTTACAGGACCAATGTGTTTTAT 60.040 37.037 0.00 0.00 32.02 1.40
2390 2485 6.263617 GGTTCTTACAGGACCAATGTGTTTTA 59.736 38.462 0.00 0.00 32.02 1.52
2395 2490 4.021102 AGGTTCTTACAGGACCAATGTG 57.979 45.455 3.97 0.00 32.02 3.21
2399 2494 8.607713 TGATTATAAAGGTTCTTACAGGACCAA 58.392 33.333 3.97 0.00 0.00 3.67
2437 2533 4.082949 TGGTCAATGTGTCTACACTCTACG 60.083 45.833 13.95 0.00 46.55 3.51
2491 2587 7.227314 GTCTCATGCACACAGAATTATATCCAA 59.773 37.037 0.00 0.00 0.00 3.53
2500 2596 1.352017 TGGGTCTCATGCACACAGAAT 59.648 47.619 0.00 0.00 0.00 2.40
2510 2606 2.789842 CCAGCATGTGGGTCTCATG 58.210 57.895 6.46 5.81 43.63 3.07
2520 2616 2.753009 TTTCTCGCCAGCCAGCATGT 62.753 55.000 0.00 0.00 0.00 3.21
2525 2621 1.808411 TTAGTTTTCTCGCCAGCCAG 58.192 50.000 0.00 0.00 0.00 4.85
2531 2627 5.938322 TCACAATTGATTAGTTTTCTCGCC 58.062 37.500 13.59 0.00 0.00 5.54
2638 2735 6.477033 CGGACAAATCACACCAAAATTAAACA 59.523 34.615 0.00 0.00 0.00 2.83
2657 2754 7.039504 AGGAACTTAAATAGAGTACACGGACAA 60.040 37.037 0.00 0.00 27.25 3.18
2662 2759 8.457261 ACACTAGGAACTTAAATAGAGTACACG 58.543 37.037 0.00 0.00 41.75 4.49
2663 2760 9.570488 CACACTAGGAACTTAAATAGAGTACAC 57.430 37.037 0.00 0.00 41.75 2.90
2676 2773 1.372501 ATGGGCCACACTAGGAACTT 58.627 50.000 9.28 0.00 41.75 2.66
2678 2775 2.092323 GAAATGGGCCACACTAGGAAC 58.908 52.381 9.28 0.00 0.00 3.62
2682 2779 3.056607 CCAAAAGAAATGGGCCACACTAG 60.057 47.826 9.28 2.89 34.15 2.57
2683 2780 2.896685 CCAAAAGAAATGGGCCACACTA 59.103 45.455 9.28 0.00 34.15 2.74
2692 2789 8.445493 GTCAAAAAGATATGCCAAAAGAAATGG 58.555 33.333 0.00 0.00 41.08 3.16
2695 2792 8.954950 TTGTCAAAAAGATATGCCAAAAGAAA 57.045 26.923 0.00 0.00 0.00 2.52
2762 3172 0.811281 CCCAGTTCTTTGGCCGATTC 59.189 55.000 0.00 0.00 36.88 2.52
2812 3223 8.023128 ACAACTCATGTAAATGTCAAATAGTGC 58.977 33.333 0.00 0.00 41.63 4.40
2828 3248 8.635765 ACTAACCATTATTTCACAACTCATGT 57.364 30.769 0.00 0.00 45.34 3.21
2838 3258 6.321821 ACTGGCCTACTAACCATTATTTCA 57.678 37.500 3.32 0.00 34.82 2.69
2924 3352 9.174166 GTGGGCAAAAGAATAGAGTAAATAAGA 57.826 33.333 0.00 0.00 0.00 2.10
2931 3359 5.248477 AGTGAGTGGGCAAAAGAATAGAGTA 59.752 40.000 0.00 0.00 0.00 2.59
2976 3404 6.291377 TGCCAACACCTAGATAATGAGAATC 58.709 40.000 0.00 0.00 0.00 2.52
3074 3502 7.865706 TGAAAACTAGAAAGCTTCTGAACTT 57.134 32.000 0.00 0.00 40.94 2.66
3075 3503 7.716998 TGATGAAAACTAGAAAGCTTCTGAACT 59.283 33.333 0.00 0.00 40.94 3.01
3173 3603 5.420725 AGTCAATACTGCACATAGGAACA 57.579 39.130 0.00 0.00 33.57 3.18
3174 3604 5.874810 TGAAGTCAATACTGCACATAGGAAC 59.125 40.000 0.00 0.00 36.26 3.62
3428 3858 5.223382 ACAGTACTGTTGAAAGATGACTCG 58.777 41.667 22.95 0.00 41.83 4.18
3676 4111 4.113354 GGGAGTAGACAATAAGAACAGCG 58.887 47.826 0.00 0.00 0.00 5.18
3732 4169 2.844348 ACGGAGGGAGTATTGGTTGAAT 59.156 45.455 0.00 0.00 0.00 2.57
3737 4174 0.338814 AGGACGGAGGGAGTATTGGT 59.661 55.000 0.00 0.00 0.00 3.67
3738 4175 1.497161 AAGGACGGAGGGAGTATTGG 58.503 55.000 0.00 0.00 0.00 3.16
3740 4177 5.028131 TCTTTAAAGGACGGAGGGAGTATT 58.972 41.667 15.13 0.00 0.00 1.89
3741 4178 4.617593 TCTTTAAAGGACGGAGGGAGTAT 58.382 43.478 15.13 0.00 0.00 2.12
3742 4179 4.021916 CTCTTTAAAGGACGGAGGGAGTA 58.978 47.826 15.13 0.00 0.00 2.59
3743 4180 2.832733 CTCTTTAAAGGACGGAGGGAGT 59.167 50.000 15.13 0.00 0.00 3.85
3744 4181 2.832733 ACTCTTTAAAGGACGGAGGGAG 59.167 50.000 15.13 4.81 0.00 4.30
3745 4182 2.565834 CACTCTTTAAAGGACGGAGGGA 59.434 50.000 15.13 0.00 29.82 4.20
3746 4183 2.302157 ACACTCTTTAAAGGACGGAGGG 59.698 50.000 15.13 8.51 34.07 4.30
3747 4184 3.679824 ACACTCTTTAAAGGACGGAGG 57.320 47.619 15.13 2.85 0.00 4.30
3748 4185 5.388408 AGTACACTCTTTAAAGGACGGAG 57.612 43.478 15.13 7.51 0.00 4.63
3749 4186 5.279156 GGAAGTACACTCTTTAAAGGACGGA 60.279 44.000 15.13 0.00 0.00 4.69
3750 4187 4.928020 GGAAGTACACTCTTTAAAGGACGG 59.072 45.833 15.13 5.64 0.00 4.79
3751 4188 5.780984 AGGAAGTACACTCTTTAAAGGACG 58.219 41.667 15.13 6.90 0.00 4.79
3752 4189 7.894708 AGTAGGAAGTACACTCTTTAAAGGAC 58.105 38.462 15.13 6.27 33.55 3.85
3753 4190 8.488308 AAGTAGGAAGTACACTCTTTAAAGGA 57.512 34.615 15.13 1.82 33.55 3.36
3754 4191 8.989980 CAAAGTAGGAAGTACACTCTTTAAAGG 58.010 37.037 15.13 8.48 33.55 3.11
3755 4192 9.543783 ACAAAGTAGGAAGTACACTCTTTAAAG 57.456 33.333 9.04 9.04 33.55 1.85
3756 4193 9.895138 AACAAAGTAGGAAGTACACTCTTTAAA 57.105 29.630 0.00 0.00 33.55 1.52
3757 4194 9.321562 CAACAAAGTAGGAAGTACACTCTTTAA 57.678 33.333 0.00 0.00 33.55 1.52
3758 4195 7.929785 CCAACAAAGTAGGAAGTACACTCTTTA 59.070 37.037 0.00 0.00 33.55 1.85
3759 4196 6.766467 CCAACAAAGTAGGAAGTACACTCTTT 59.234 38.462 0.00 1.04 33.55 2.52
3760 4197 6.099269 TCCAACAAAGTAGGAAGTACACTCTT 59.901 38.462 0.00 0.00 33.55 2.85
3761 4198 5.601313 TCCAACAAAGTAGGAAGTACACTCT 59.399 40.000 0.00 0.00 33.55 3.24
3762 4199 5.850614 TCCAACAAAGTAGGAAGTACACTC 58.149 41.667 0.00 0.00 33.55 3.51
3763 4200 5.221661 CCTCCAACAAAGTAGGAAGTACACT 60.222 44.000 0.00 0.00 33.55 3.55
3764 4201 4.995487 CCTCCAACAAAGTAGGAAGTACAC 59.005 45.833 0.00 0.00 33.55 2.90
3765 4202 4.041198 CCCTCCAACAAAGTAGGAAGTACA 59.959 45.833 0.00 0.00 33.55 2.90
3766 4203 4.041321 ACCCTCCAACAAAGTAGGAAGTAC 59.959 45.833 0.00 0.00 0.00 2.73
3767 4204 4.237018 ACCCTCCAACAAAGTAGGAAGTA 58.763 43.478 0.00 0.00 0.00 2.24
3768 4205 3.053826 ACCCTCCAACAAAGTAGGAAGT 58.946 45.455 0.00 0.00 0.00 3.01
3769 4206 3.072476 TGACCCTCCAACAAAGTAGGAAG 59.928 47.826 0.00 0.00 0.00 3.46
3770 4207 3.050089 TGACCCTCCAACAAAGTAGGAA 58.950 45.455 0.00 0.00 0.00 3.36
3771 4208 2.696775 TGACCCTCCAACAAAGTAGGA 58.303 47.619 0.00 0.00 0.00 2.94
3772 4209 3.181443 ACTTGACCCTCCAACAAAGTAGG 60.181 47.826 0.00 0.00 0.00 3.18
3773 4210 4.086706 ACTTGACCCTCCAACAAAGTAG 57.913 45.455 0.00 0.00 0.00 2.57
3774 4211 4.513406 AACTTGACCCTCCAACAAAGTA 57.487 40.909 0.00 0.00 0.00 2.24
3775 4212 3.382083 AACTTGACCCTCCAACAAAGT 57.618 42.857 0.00 0.00 0.00 2.66
3776 4213 3.699038 TCAAACTTGACCCTCCAACAAAG 59.301 43.478 0.00 0.00 31.01 2.77
3777 4214 3.702792 TCAAACTTGACCCTCCAACAAA 58.297 40.909 0.00 0.00 31.01 2.83
3778 4215 3.374042 TCAAACTTGACCCTCCAACAA 57.626 42.857 0.00 0.00 31.01 2.83
3789 4226 2.096819 GCACAAACTCGGTCAAACTTGA 59.903 45.455 0.00 0.00 34.20 3.02
3790 4227 2.159448 TGCACAAACTCGGTCAAACTTG 60.159 45.455 0.00 0.00 0.00 3.16
3791 4228 2.088423 TGCACAAACTCGGTCAAACTT 58.912 42.857 0.00 0.00 0.00 2.66
3792 4229 1.745232 TGCACAAACTCGGTCAAACT 58.255 45.000 0.00 0.00 0.00 2.66
3793 4230 2.553079 TTGCACAAACTCGGTCAAAC 57.447 45.000 0.00 0.00 0.00 2.93
3794 4231 3.577649 TTTTGCACAAACTCGGTCAAA 57.422 38.095 0.00 0.00 0.00 2.69
3795 4232 3.577649 TTTTTGCACAAACTCGGTCAA 57.422 38.095 0.00 0.00 0.00 3.18
3796 4233 3.791973 ATTTTTGCACAAACTCGGTCA 57.208 38.095 0.00 0.00 0.00 4.02
3797 4234 7.247728 TGATATATTTTTGCACAAACTCGGTC 58.752 34.615 0.00 0.00 0.00 4.79
3798 4235 7.151999 TGATATATTTTTGCACAAACTCGGT 57.848 32.000 0.00 0.00 0.00 4.69
3799 4236 8.533965 CATTGATATATTTTTGCACAAACTCGG 58.466 33.333 0.00 0.00 0.00 4.63
3800 4237 9.075519 ACATTGATATATTTTTGCACAAACTCG 57.924 29.630 0.00 0.00 0.00 4.18
3942 4379 5.474825 TCCAAGTTTGTTGGAAAGTCAAAC 58.525 37.500 3.95 10.66 44.90 2.93
3943 4380 5.730296 TCCAAGTTTGTTGGAAAGTCAAA 57.270 34.783 3.95 0.00 44.90 2.69
3951 4388 4.850680 AGTGTACTTCCAAGTTTGTTGGA 58.149 39.130 2.24 2.24 46.08 3.53
3952 4389 4.881850 AGAGTGTACTTCCAAGTTTGTTGG 59.118 41.667 0.00 0.00 40.37 3.77
3953 4390 6.436843 AAGAGTGTACTTCCAAGTTTGTTG 57.563 37.500 0.00 0.00 40.37 3.33
3954 4391 6.657541 TGAAAGAGTGTACTTCCAAGTTTGTT 59.342 34.615 0.00 0.00 40.37 2.83
3955 4392 6.177610 TGAAAGAGTGTACTTCCAAGTTTGT 58.822 36.000 0.00 0.00 40.37 2.83
3956 4393 6.677781 TGAAAGAGTGTACTTCCAAGTTTG 57.322 37.500 0.00 0.00 40.37 2.93
3957 4394 6.318900 CCTTGAAAGAGTGTACTTCCAAGTTT 59.681 38.462 0.00 0.00 40.37 2.66
3958 4395 5.823045 CCTTGAAAGAGTGTACTTCCAAGTT 59.177 40.000 0.00 0.00 40.37 2.66
3959 4396 5.130477 TCCTTGAAAGAGTGTACTTCCAAGT 59.870 40.000 0.00 0.00 42.91 3.16
3960 4397 5.467063 GTCCTTGAAAGAGTGTACTTCCAAG 59.533 44.000 0.00 0.00 0.00 3.61
3961 4398 5.365619 GTCCTTGAAAGAGTGTACTTCCAA 58.634 41.667 0.00 0.00 0.00 3.53
3962 4399 4.500887 CGTCCTTGAAAGAGTGTACTTCCA 60.501 45.833 0.00 0.00 0.00 3.53
3963 4400 3.988517 CGTCCTTGAAAGAGTGTACTTCC 59.011 47.826 0.00 0.00 0.00 3.46
3964 4401 3.988517 CCGTCCTTGAAAGAGTGTACTTC 59.011 47.826 0.00 0.00 0.00 3.01
3965 4402 3.640029 TCCGTCCTTGAAAGAGTGTACTT 59.360 43.478 0.00 0.00 0.00 2.24
3966 4403 3.228453 TCCGTCCTTGAAAGAGTGTACT 58.772 45.455 0.00 0.00 0.00 2.73
3967 4404 3.576648 CTCCGTCCTTGAAAGAGTGTAC 58.423 50.000 0.00 0.00 0.00 2.90
3968 4405 2.561419 CCTCCGTCCTTGAAAGAGTGTA 59.439 50.000 0.00 0.00 0.00 2.90
3969 4406 1.344763 CCTCCGTCCTTGAAAGAGTGT 59.655 52.381 0.00 0.00 0.00 3.55
3970 4407 1.338200 CCCTCCGTCCTTGAAAGAGTG 60.338 57.143 0.00 0.00 0.00 3.51
3971 4408 0.977395 CCCTCCGTCCTTGAAAGAGT 59.023 55.000 0.00 0.00 0.00 3.24
3972 4409 1.205893 CTCCCTCCGTCCTTGAAAGAG 59.794 57.143 0.00 0.00 0.00 2.85
3973 4410 1.267121 CTCCCTCCGTCCTTGAAAGA 58.733 55.000 0.00 0.00 0.00 2.52
3974 4411 0.977395 ACTCCCTCCGTCCTTGAAAG 59.023 55.000 0.00 0.00 0.00 2.62
3975 4412 2.314071 TACTCCCTCCGTCCTTGAAA 57.686 50.000 0.00 0.00 0.00 2.69
3976 4413 2.108168 CATACTCCCTCCGTCCTTGAA 58.892 52.381 0.00 0.00 0.00 2.69
3977 4414 1.776662 CATACTCCCTCCGTCCTTGA 58.223 55.000 0.00 0.00 0.00 3.02
3978 4415 0.105039 GCATACTCCCTCCGTCCTTG 59.895 60.000 0.00 0.00 0.00 3.61
3979 4416 0.325296 TGCATACTCCCTCCGTCCTT 60.325 55.000 0.00 0.00 0.00 3.36
3980 4417 0.105453 ATGCATACTCCCTCCGTCCT 60.105 55.000 0.00 0.00 0.00 3.85
3981 4418 0.034059 CATGCATACTCCCTCCGTCC 59.966 60.000 0.00 0.00 0.00 4.79
3982 4419 0.753262 ACATGCATACTCCCTCCGTC 59.247 55.000 0.00 0.00 0.00 4.79
3983 4420 1.687123 GTACATGCATACTCCCTCCGT 59.313 52.381 0.00 0.00 0.00 4.69
3984 4421 1.686587 TGTACATGCATACTCCCTCCG 59.313 52.381 0.00 0.00 0.00 4.63
3985 4422 2.965831 TCTGTACATGCATACTCCCTCC 59.034 50.000 0.00 0.00 0.00 4.30
3986 4423 4.342378 TCTTCTGTACATGCATACTCCCTC 59.658 45.833 0.00 0.00 0.00 4.30
3987 4424 4.290093 TCTTCTGTACATGCATACTCCCT 58.710 43.478 0.00 0.00 0.00 4.20
3988 4425 4.672587 TCTTCTGTACATGCATACTCCC 57.327 45.455 0.00 0.00 0.00 4.30
3989 4426 9.579768 CTATAATCTTCTGTACATGCATACTCC 57.420 37.037 0.00 0.00 0.00 3.85
3990 4427 9.081997 GCTATAATCTTCTGTACATGCATACTC 57.918 37.037 0.00 0.00 0.00 2.59
3991 4428 8.037758 GGCTATAATCTTCTGTACATGCATACT 58.962 37.037 0.00 0.00 0.00 2.12
3992 4429 7.278868 GGGCTATAATCTTCTGTACATGCATAC 59.721 40.741 0.00 0.00 0.00 2.39
4038 4475 3.211045 GTTAGACACAACTTCCAAGGCA 58.789 45.455 0.00 0.00 0.00 4.75
4075 4513 5.871324 TTTTCCCCTTTCATAACCCTACT 57.129 39.130 0.00 0.00 0.00 2.57
4104 4542 9.485206 TTCTACCAGTTTGAGATAACTTTACAC 57.515 33.333 0.00 0.00 36.24 2.90
4158 4797 1.640149 TCCATCCATTCCTTCCTGCAA 59.360 47.619 0.00 0.00 0.00 4.08
4163 4802 6.441088 AGTATTACTCCATCCATTCCTTCC 57.559 41.667 0.00 0.00 0.00 3.46
4193 4832 4.630894 AATGAACAACAGCACGAAGAAA 57.369 36.364 0.00 0.00 0.00 2.52
4194 4833 4.350346 CAAATGAACAACAGCACGAAGAA 58.650 39.130 0.00 0.00 0.00 2.52
4202 4842 8.190784 AGCTAATAATACCAAATGAACAACAGC 58.809 33.333 0.00 0.00 0.00 4.40
4294 4934 4.321718 AGAACTGGATGCCATATTCATCG 58.678 43.478 11.10 0.00 40.80 3.84
4387 5027 1.130749 GCACTCTGAAAGATGCAGCAG 59.869 52.381 4.07 0.84 45.62 4.24
4393 5033 3.405831 TGTCTTGGCACTCTGAAAGATG 58.594 45.455 0.00 0.00 45.62 2.90
4739 5380 4.478206 ACCACAACATAGTCATCTCCTG 57.522 45.455 0.00 0.00 0.00 3.86
4768 5409 8.946085 TGCAAAGAATATAGAAGGTAACACAAG 58.054 33.333 0.00 0.00 41.41 3.16
4857 5498 2.179427 AGTGGATGGTTCTCACGATGA 58.821 47.619 0.00 0.00 36.60 2.92
4979 5620 1.026718 GTCCATGGCTAGTGCACCAC 61.027 60.000 14.63 2.68 39.19 4.16
4982 5623 0.804989 GTTGTCCATGGCTAGTGCAC 59.195 55.000 9.40 9.40 41.91 4.57
5054 5695 7.113965 GCTTGCTCAAATAATTATGGTCATTCG 59.886 37.037 0.00 0.00 0.00 3.34
5170 5811 5.836898 ACTACAACCAATATATGACGGAGGA 59.163 40.000 3.69 0.00 0.00 3.71
5193 5834 8.870879 GCTTCGTCCCATAATATAAGATGTTAC 58.129 37.037 0.00 0.00 0.00 2.50
5216 5857 2.732366 CAGTATGCATCGTACTCGCTT 58.268 47.619 0.19 0.00 34.39 4.68
5239 5880 6.187682 AACTAACAAAGTTGGCATAGCCTAT 58.812 36.000 9.71 0.00 46.90 2.57
5332 5973 5.739752 ACATAACATGTGTCCATCATTCG 57.260 39.130 0.00 0.00 43.01 3.34
5404 6045 9.646336 CGGCACATCTAAACAAATAGTATAAAC 57.354 33.333 0.00 0.00 0.00 2.01
5414 6055 2.852449 TCACCGGCACATCTAAACAAA 58.148 42.857 0.00 0.00 0.00 2.83
5473 6114 1.000171 GCTGGAAACTGAAAGCAAGGG 60.000 52.381 0.00 0.00 37.60 3.95
5480 6121 9.747898 TTAATAGATAAAGGCTGGAAACTGAAA 57.252 29.630 0.00 0.00 0.00 2.69
5489 6130 7.750229 TGCATTCTTAATAGATAAAGGCTGG 57.250 36.000 0.00 0.00 0.00 4.85
5589 6230 6.023103 CGGTTACGTCAAATAAATAAACACGC 60.023 38.462 0.00 0.00 34.81 5.34
5676 6317 4.699257 AGGCTAGCATTTTCTTCAGAACAG 59.301 41.667 18.24 0.00 33.13 3.16
5697 6338 2.205022 TCTGTTCCTGCCAATGAAGG 57.795 50.000 0.00 0.00 34.65 3.46
5698 6339 3.571401 AGTTTCTGTTCCTGCCAATGAAG 59.429 43.478 0.00 0.00 0.00 3.02
5699 6340 3.565307 AGTTTCTGTTCCTGCCAATGAA 58.435 40.909 0.00 0.00 0.00 2.57
5700 6341 3.228188 AGTTTCTGTTCCTGCCAATGA 57.772 42.857 0.00 0.00 0.00 2.57
5701 6342 4.326504 AAAGTTTCTGTTCCTGCCAATG 57.673 40.909 0.00 0.00 0.00 2.82
5702 6343 5.774690 TCATAAAGTTTCTGTTCCTGCCAAT 59.225 36.000 0.00 0.00 0.00 3.16
5703 6344 5.136828 TCATAAAGTTTCTGTTCCTGCCAA 58.863 37.500 0.00 0.00 0.00 4.52
5704 6345 4.724399 TCATAAAGTTTCTGTTCCTGCCA 58.276 39.130 0.00 0.00 0.00 4.92
5705 6346 5.705609 TTCATAAAGTTTCTGTTCCTGCC 57.294 39.130 0.00 0.00 0.00 4.85
5706 6347 9.294030 CAATATTCATAAAGTTTCTGTTCCTGC 57.706 33.333 0.00 0.00 0.00 4.85
5712 6353 9.846248 GCAAGTCAATATTCATAAAGTTTCTGT 57.154 29.630 0.00 0.00 0.00 3.41
5713 6354 9.294030 GGCAAGTCAATATTCATAAAGTTTCTG 57.706 33.333 0.00 0.00 0.00 3.02
5714 6355 8.184192 CGGCAAGTCAATATTCATAAAGTTTCT 58.816 33.333 0.00 0.00 0.00 2.52
5715 6356 8.181573 TCGGCAAGTCAATATTCATAAAGTTTC 58.818 33.333 0.00 0.00 0.00 2.78
5716 6357 8.050778 TCGGCAAGTCAATATTCATAAAGTTT 57.949 30.769 0.00 0.00 0.00 2.66
5717 6358 7.624360 TCGGCAAGTCAATATTCATAAAGTT 57.376 32.000 0.00 0.00 0.00 2.66
5718 6359 7.624360 TTCGGCAAGTCAATATTCATAAAGT 57.376 32.000 0.00 0.00 0.00 2.66
5719 6360 7.967854 TGTTTCGGCAAGTCAATATTCATAAAG 59.032 33.333 0.00 0.00 0.00 1.85
5720 6361 7.821652 TGTTTCGGCAAGTCAATATTCATAAA 58.178 30.769 0.00 0.00 0.00 1.40
5721 6362 7.384439 TGTTTCGGCAAGTCAATATTCATAA 57.616 32.000 0.00 0.00 0.00 1.90
5722 6363 6.993786 TGTTTCGGCAAGTCAATATTCATA 57.006 33.333 0.00 0.00 0.00 2.15
5723 6364 5.895636 TGTTTCGGCAAGTCAATATTCAT 57.104 34.783 0.00 0.00 0.00 2.57
5724 6365 5.697473 TTGTTTCGGCAAGTCAATATTCA 57.303 34.783 0.00 0.00 0.00 2.57
5725 6366 6.586082 ACATTTGTTTCGGCAAGTCAATATTC 59.414 34.615 0.00 0.00 0.00 1.75
5726 6367 6.454795 ACATTTGTTTCGGCAAGTCAATATT 58.545 32.000 0.00 0.00 0.00 1.28
5727 6368 6.024552 ACATTTGTTTCGGCAAGTCAATAT 57.975 33.333 0.00 0.00 0.00 1.28
5728 6369 5.446143 ACATTTGTTTCGGCAAGTCAATA 57.554 34.783 0.00 0.00 0.00 1.90
5729 6370 4.320608 ACATTTGTTTCGGCAAGTCAAT 57.679 36.364 0.00 0.00 0.00 2.57
5730 6371 3.791973 ACATTTGTTTCGGCAAGTCAA 57.208 38.095 0.00 0.00 0.00 3.18
5731 6372 3.791973 AACATTTGTTTCGGCAAGTCA 57.208 38.095 0.00 0.00 33.93 3.41
5732 6373 3.668656 GCTAACATTTGTTTCGGCAAGTC 59.331 43.478 0.63 0.00 39.31 3.01
5733 6374 3.552068 GGCTAACATTTGTTTCGGCAAGT 60.552 43.478 0.63 0.00 39.31 3.16
5734 6375 2.986479 GGCTAACATTTGTTTCGGCAAG 59.014 45.455 0.63 0.00 39.31 4.01
5735 6376 2.625790 AGGCTAACATTTGTTTCGGCAA 59.374 40.909 15.87 0.00 39.31 4.52
5736 6377 2.235016 AGGCTAACATTTGTTTCGGCA 58.765 42.857 15.87 0.00 39.31 5.69
5737 6378 3.242518 GAAGGCTAACATTTGTTTCGGC 58.757 45.455 0.63 6.15 39.31 5.54
5738 6379 4.497473 TGAAGGCTAACATTTGTTTCGG 57.503 40.909 0.63 0.00 39.31 4.30
5739 6380 7.305474 ACTAATGAAGGCTAACATTTGTTTCG 58.695 34.615 19.53 8.66 38.50 3.46
5740 6381 9.774742 CTACTAATGAAGGCTAACATTTGTTTC 57.225 33.333 25.19 4.72 40.56 2.78
5741 6382 8.739972 CCTACTAATGAAGGCTAACATTTGTTT 58.260 33.333 25.19 13.40 40.56 2.83
5742 6383 8.107095 TCCTACTAATGAAGGCTAACATTTGTT 58.893 33.333 25.19 16.07 40.56 2.83
5743 6384 7.630082 TCCTACTAATGAAGGCTAACATTTGT 58.370 34.615 24.27 24.27 41.89 2.83
5744 6385 8.398665 GTTCCTACTAATGAAGGCTAACATTTG 58.601 37.037 19.53 19.06 37.75 2.32
5745 6386 8.107095 TGTTCCTACTAATGAAGGCTAACATTT 58.893 33.333 19.53 9.58 37.75 2.32
5875 6864 7.897575 TGAAAAAGTGTAACAATGTTTGCTT 57.102 28.000 3.17 4.05 41.43 3.91
5876 6865 7.386299 TGTTGAAAAAGTGTAACAATGTTTGCT 59.614 29.630 3.17 0.00 41.43 3.91
5877 6866 7.513968 TGTTGAAAAAGTGTAACAATGTTTGC 58.486 30.769 3.17 0.00 41.43 3.68
5878 6867 9.475505 CATGTTGAAAAAGTGTAACAATGTTTG 57.524 29.630 3.17 0.00 41.43 2.93
5879 6868 9.213799 ACATGTTGAAAAAGTGTAACAATGTTT 57.786 25.926 3.17 0.00 41.43 2.83
5880 6869 8.770438 ACATGTTGAAAAAGTGTAACAATGTT 57.230 26.923 3.43 3.43 41.43 2.71
5909 6904 3.443681 ACTTATGGTCGCCCTTTTGAATG 59.556 43.478 0.00 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.