Multiple sequence alignment - TraesCS3D01G349900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G349900 chr3D 100.000 2598 0 0 1 2598 461211851 461214448 0.000000e+00 4798
1 TraesCS3D01G349900 chr3A 91.921 1473 84 24 682 2134 603803116 603804573 0.000000e+00 2028
2 TraesCS3D01G349900 chr3A 84.519 239 9 8 2380 2598 603805005 603805235 7.280000e-51 211
3 TraesCS3D01G349900 chr3B 91.064 1410 90 20 682 2084 611727160 611728540 0.000000e+00 1873
4 TraesCS3D01G349900 chr3B 86.482 577 54 15 77 635 611726661 611727231 1.710000e-171 612
5 TraesCS3D01G349900 chr3B 84.375 256 23 8 2358 2598 611729097 611729350 4.320000e-58 235
6 TraesCS3D01G349900 chr1B 86.813 455 47 4 1 445 469588799 469589250 1.800000e-136 496
7 TraesCS3D01G349900 chr1B 83.077 390 53 12 993 1376 513545775 513545393 2.480000e-90 342
8 TraesCS3D01G349900 chr1B 88.571 105 12 0 1495 1599 513545249 513545145 7.550000e-26 128
9 TraesCS3D01G349900 chr1D 83.632 391 49 13 993 1376 383320442 383320060 1.140000e-93 353
10 TraesCS3D01G349900 chr1D 88.991 109 12 0 1490 1598 383319941 383319833 4.510000e-28 135
11 TraesCS3D01G349900 chr1A 83.077 390 53 10 993 1376 483034072 483033690 2.480000e-90 342
12 TraesCS3D01G349900 chr1A 89.423 104 11 0 1495 1598 483033571 483033468 5.830000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G349900 chr3D 461211851 461214448 2597 False 4798.000000 4798 100.0000 1 2598 1 chr3D.!!$F1 2597
1 TraesCS3D01G349900 chr3A 603803116 603805235 2119 False 1119.500000 2028 88.2200 682 2598 2 chr3A.!!$F1 1916
2 TraesCS3D01G349900 chr3B 611726661 611729350 2689 False 906.666667 1873 87.3070 77 2598 3 chr3B.!!$F1 2521
3 TraesCS3D01G349900 chr1B 513545145 513545775 630 True 235.000000 342 85.8240 993 1599 2 chr1B.!!$R1 606
4 TraesCS3D01G349900 chr1D 383319833 383320442 609 True 244.000000 353 86.3115 993 1598 2 chr1D.!!$R1 605
5 TraesCS3D01G349900 chr1A 483033468 483034072 604 True 237.000000 342 86.2500 993 1598 2 chr1A.!!$R1 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
591 603 0.029834 CCTGCTTGTGTCTGTGCAAC 59.97 55.0 0.0 0.0 34.9 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2212 2290 0.250234 CAAAGATCTGCGGTCTGGGA 59.75 55.0 0.0 0.0 0.0 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.623811 TCTAGTTTCTCCCAGTGTGGC 59.376 52.381 0.00 0.00 35.79 5.01
21 22 1.625818 CTAGTTTCTCCCAGTGTGGCT 59.374 52.381 0.00 0.00 35.79 4.75
22 23 0.846693 AGTTTCTCCCAGTGTGGCTT 59.153 50.000 0.00 0.00 35.79 4.35
23 24 2.054799 AGTTTCTCCCAGTGTGGCTTA 58.945 47.619 0.00 0.00 35.79 3.09
24 25 2.644798 AGTTTCTCCCAGTGTGGCTTAT 59.355 45.455 0.00 0.00 35.79 1.73
25 26 2.749621 GTTTCTCCCAGTGTGGCTTATG 59.250 50.000 0.00 0.00 35.79 1.90
26 27 1.656587 TCTCCCAGTGTGGCTTATGT 58.343 50.000 0.00 0.00 35.79 2.29
27 28 1.278985 TCTCCCAGTGTGGCTTATGTG 59.721 52.381 0.00 0.00 35.79 3.21
28 29 1.003580 CTCCCAGTGTGGCTTATGTGT 59.996 52.381 0.00 0.00 35.79 3.72
29 30 1.423541 TCCCAGTGTGGCTTATGTGTT 59.576 47.619 0.00 0.00 35.79 3.32
30 31 1.541147 CCCAGTGTGGCTTATGTGTTG 59.459 52.381 0.00 0.00 35.79 3.33
31 32 2.229792 CCAGTGTGGCTTATGTGTTGT 58.770 47.619 0.00 0.00 0.00 3.32
32 33 2.030893 CCAGTGTGGCTTATGTGTTGTG 60.031 50.000 0.00 0.00 0.00 3.33
33 34 2.877786 CAGTGTGGCTTATGTGTTGTGA 59.122 45.455 0.00 0.00 0.00 3.58
34 35 3.058708 CAGTGTGGCTTATGTGTTGTGAG 60.059 47.826 0.00 0.00 0.00 3.51
35 36 2.878406 GTGTGGCTTATGTGTTGTGAGT 59.122 45.455 0.00 0.00 0.00 3.41
36 37 4.062293 GTGTGGCTTATGTGTTGTGAGTA 58.938 43.478 0.00 0.00 0.00 2.59
37 38 4.695455 GTGTGGCTTATGTGTTGTGAGTAT 59.305 41.667 0.00 0.00 0.00 2.12
38 39 4.694982 TGTGGCTTATGTGTTGTGAGTATG 59.305 41.667 0.00 0.00 0.00 2.39
39 40 4.094887 GTGGCTTATGTGTTGTGAGTATGG 59.905 45.833 0.00 0.00 0.00 2.74
40 41 3.627577 GGCTTATGTGTTGTGAGTATGGG 59.372 47.826 0.00 0.00 0.00 4.00
41 42 4.513442 GCTTATGTGTTGTGAGTATGGGA 58.487 43.478 0.00 0.00 0.00 4.37
42 43 5.126067 GCTTATGTGTTGTGAGTATGGGAT 58.874 41.667 0.00 0.00 0.00 3.85
43 44 5.008019 GCTTATGTGTTGTGAGTATGGGATG 59.992 44.000 0.00 0.00 0.00 3.51
44 45 2.710377 TGTGTTGTGAGTATGGGATGC 58.290 47.619 0.00 0.00 0.00 3.91
45 46 2.039613 TGTGTTGTGAGTATGGGATGCA 59.960 45.455 0.00 0.00 0.00 3.96
46 47 3.282021 GTGTTGTGAGTATGGGATGCAT 58.718 45.455 0.00 0.00 0.00 3.96
47 48 3.696051 GTGTTGTGAGTATGGGATGCATT 59.304 43.478 0.00 0.00 0.00 3.56
48 49 3.695556 TGTTGTGAGTATGGGATGCATTG 59.304 43.478 0.00 0.00 0.00 2.82
49 50 2.934887 TGTGAGTATGGGATGCATTGG 58.065 47.619 0.00 0.00 0.00 3.16
50 51 2.241941 TGTGAGTATGGGATGCATTGGT 59.758 45.455 0.00 0.00 0.00 3.67
51 52 3.290710 GTGAGTATGGGATGCATTGGTT 58.709 45.455 0.00 0.00 0.00 3.67
52 53 3.701040 GTGAGTATGGGATGCATTGGTTT 59.299 43.478 0.00 0.00 0.00 3.27
53 54 3.700539 TGAGTATGGGATGCATTGGTTTG 59.299 43.478 0.00 0.00 0.00 2.93
54 55 3.953612 GAGTATGGGATGCATTGGTTTGA 59.046 43.478 0.00 0.00 0.00 2.69
55 56 4.549668 AGTATGGGATGCATTGGTTTGAT 58.450 39.130 0.00 0.00 0.00 2.57
56 57 4.586001 AGTATGGGATGCATTGGTTTGATC 59.414 41.667 0.00 0.00 0.00 2.92
57 58 3.104519 TGGGATGCATTGGTTTGATCT 57.895 42.857 0.00 0.00 0.00 2.75
58 59 2.761767 TGGGATGCATTGGTTTGATCTG 59.238 45.455 0.00 0.00 0.00 2.90
59 60 2.101917 GGGATGCATTGGTTTGATCTGG 59.898 50.000 0.00 0.00 0.00 3.86
60 61 2.101917 GGATGCATTGGTTTGATCTGGG 59.898 50.000 0.00 0.00 0.00 4.45
61 62 2.601240 TGCATTGGTTTGATCTGGGA 57.399 45.000 0.00 0.00 0.00 4.37
62 63 2.449464 TGCATTGGTTTGATCTGGGAG 58.551 47.619 0.00 0.00 0.00 4.30
63 64 1.135721 GCATTGGTTTGATCTGGGAGC 59.864 52.381 0.00 0.00 0.00 4.70
64 65 1.402968 CATTGGTTTGATCTGGGAGCG 59.597 52.381 0.00 0.00 0.00 5.03
65 66 0.690192 TTGGTTTGATCTGGGAGCGA 59.310 50.000 0.00 0.00 0.00 4.93
66 67 0.911769 TGGTTTGATCTGGGAGCGAT 59.088 50.000 0.00 0.00 0.00 4.58
67 68 1.303309 GGTTTGATCTGGGAGCGATG 58.697 55.000 0.00 0.00 0.00 3.84
68 69 1.407437 GGTTTGATCTGGGAGCGATGT 60.407 52.381 0.00 0.00 0.00 3.06
69 70 2.158957 GGTTTGATCTGGGAGCGATGTA 60.159 50.000 0.00 0.00 0.00 2.29
70 71 3.126831 GTTTGATCTGGGAGCGATGTAG 58.873 50.000 0.00 0.00 0.00 2.74
71 72 1.332195 TGATCTGGGAGCGATGTAGG 58.668 55.000 0.00 0.00 0.00 3.18
72 73 1.133482 TGATCTGGGAGCGATGTAGGA 60.133 52.381 0.00 0.00 0.00 2.94
73 74 2.175202 GATCTGGGAGCGATGTAGGAT 58.825 52.381 0.00 0.00 0.00 3.24
74 75 1.621992 TCTGGGAGCGATGTAGGATC 58.378 55.000 0.00 0.00 0.00 3.36
75 76 1.133482 TCTGGGAGCGATGTAGGATCA 60.133 52.381 0.00 0.00 0.00 2.92
108 109 6.014647 TCTAGTTGTAGAGAGCCCTTGTTAA 58.985 40.000 0.00 0.00 31.23 2.01
114 115 6.640518 TGTAGAGAGCCCTTGTTAACTATTG 58.359 40.000 7.22 0.00 0.00 1.90
115 116 6.439375 TGTAGAGAGCCCTTGTTAACTATTGA 59.561 38.462 7.22 0.00 0.00 2.57
159 160 3.201290 CTGTGTATCCTGTTCATGAGGC 58.799 50.000 0.00 0.00 0.00 4.70
162 163 2.840038 TGTATCCTGTTCATGAGGCTGT 59.160 45.455 0.00 0.00 0.00 4.40
172 173 6.888105 TGTTCATGAGGCTGTAGATTTATCA 58.112 36.000 0.00 0.00 0.00 2.15
174 175 7.994911 TGTTCATGAGGCTGTAGATTTATCATT 59.005 33.333 0.00 0.00 0.00 2.57
187 188 7.151999 AGATTTATCATTGTTTGGTGCGTTA 57.848 32.000 0.00 0.00 0.00 3.18
192 193 5.041951 TCATTGTTTGGTGCGTTAGAATC 57.958 39.130 0.00 0.00 0.00 2.52
203 204 4.865365 GTGCGTTAGAATCTCTAGTTTGCT 59.135 41.667 0.00 0.00 29.56 3.91
243 246 2.063015 TTGTCCGGCCTGTGATTGGT 62.063 55.000 0.00 0.00 0.00 3.67
251 254 0.677731 CCTGTGATTGGTGCCGATGT 60.678 55.000 0.00 0.00 0.00 3.06
256 259 1.675483 TGATTGGTGCCGATGTAATGC 59.325 47.619 0.00 0.00 0.00 3.56
304 308 9.770097 TTTGCTTCATAGTATCCTTGAGATTAG 57.230 33.333 0.00 0.00 36.33 1.73
309 313 7.901029 TCATAGTATCCTTGAGATTAGCCAAG 58.099 38.462 0.00 0.00 39.43 3.61
326 330 2.629617 CCAAGGAGATGCACCTGTTTTT 59.370 45.455 0.00 0.00 37.85 1.94
327 331 3.553508 CCAAGGAGATGCACCTGTTTTTG 60.554 47.826 0.00 0.00 37.85 2.44
367 378 9.308318 GTTTTGGCTTGTTAAATCTTTAGAACA 57.692 29.630 0.00 0.00 0.00 3.18
384 395 1.331214 ACATGAACCTTGCTTGGGTG 58.669 50.000 0.00 0.00 37.13 4.61
392 403 1.693606 CCTTGCTTGGGTGGTCATTTT 59.306 47.619 0.00 0.00 0.00 1.82
393 404 2.104622 CCTTGCTTGGGTGGTCATTTTT 59.895 45.455 0.00 0.00 0.00 1.94
404 415 3.256631 GTGGTCATTTTTCCATGCTCTGT 59.743 43.478 0.00 0.00 36.09 3.41
407 418 4.232221 GTCATTTTTCCATGCTCTGTGTG 58.768 43.478 0.00 0.00 0.00 3.82
408 419 3.890756 TCATTTTTCCATGCTCTGTGTGT 59.109 39.130 0.00 0.00 0.00 3.72
409 420 5.048782 GTCATTTTTCCATGCTCTGTGTGTA 60.049 40.000 0.00 0.00 0.00 2.90
410 421 5.534278 TCATTTTTCCATGCTCTGTGTGTAA 59.466 36.000 0.00 0.00 0.00 2.41
411 422 6.209192 TCATTTTTCCATGCTCTGTGTGTAAT 59.791 34.615 0.00 0.00 0.00 1.89
412 423 5.627499 TTTTCCATGCTCTGTGTGTAATC 57.373 39.130 0.00 0.00 0.00 1.75
414 425 3.865446 TCCATGCTCTGTGTGTAATCTG 58.135 45.455 0.00 0.00 0.00 2.90
415 426 3.261643 TCCATGCTCTGTGTGTAATCTGT 59.738 43.478 0.00 0.00 0.00 3.41
416 427 4.005650 CCATGCTCTGTGTGTAATCTGTT 58.994 43.478 0.00 0.00 0.00 3.16
417 428 4.093998 CCATGCTCTGTGTGTAATCTGTTC 59.906 45.833 0.00 0.00 0.00 3.18
426 437 6.475504 TGTGTGTAATCTGTTCAGGAATCAT 58.524 36.000 0.00 0.00 0.00 2.45
428 439 6.595326 GTGTGTAATCTGTTCAGGAATCATGA 59.405 38.462 0.00 0.00 0.00 3.07
441 452 5.180117 CAGGAATCATGAACTTCGTTTCTGT 59.820 40.000 0.00 0.00 0.00 3.41
465 476 7.385478 TGTCAGTTCACGTGTTTATATGCTTAA 59.615 33.333 16.51 0.00 0.00 1.85
498 509 9.686683 ATCTACCTAGTTGATTTGTTAAATGCT 57.313 29.630 0.00 0.00 0.00 3.79
501 512 7.305474 ACCTAGTTGATTTGTTAAATGCTTCG 58.695 34.615 0.00 0.00 0.00 3.79
505 516 5.119931 TGATTTGTTAAATGCTTCGCAGT 57.880 34.783 0.00 0.00 43.65 4.40
507 518 3.552604 TTGTTAAATGCTTCGCAGTCC 57.447 42.857 0.00 0.00 43.65 3.85
515 526 1.580845 GCTTCGCAGTCCAGTGCATT 61.581 55.000 7.16 0.00 44.21 3.56
539 550 5.766150 TTCATTTTGGAACGTGATTCACT 57.234 34.783 14.54 0.00 39.30 3.41
540 551 5.766150 TCATTTTGGAACGTGATTCACTT 57.234 34.783 14.54 2.49 39.30 3.16
573 585 4.423625 AGCTGTTACCAATCATCCTACC 57.576 45.455 0.00 0.00 0.00 3.18
574 586 4.040755 AGCTGTTACCAATCATCCTACCT 58.959 43.478 0.00 0.00 0.00 3.08
575 587 4.130118 GCTGTTACCAATCATCCTACCTG 58.870 47.826 0.00 0.00 0.00 4.00
576 588 4.130118 CTGTTACCAATCATCCTACCTGC 58.870 47.826 0.00 0.00 0.00 4.85
577 589 3.780294 TGTTACCAATCATCCTACCTGCT 59.220 43.478 0.00 0.00 0.00 4.24
578 590 4.227300 TGTTACCAATCATCCTACCTGCTT 59.773 41.667 0.00 0.00 0.00 3.91
579 591 3.287867 ACCAATCATCCTACCTGCTTG 57.712 47.619 0.00 0.00 0.00 4.01
580 592 2.578021 ACCAATCATCCTACCTGCTTGT 59.422 45.455 0.00 0.00 0.00 3.16
581 593 2.947652 CCAATCATCCTACCTGCTTGTG 59.052 50.000 0.00 0.00 0.00 3.33
582 594 3.614092 CAATCATCCTACCTGCTTGTGT 58.386 45.455 0.00 0.00 0.00 3.72
583 595 3.550437 ATCATCCTACCTGCTTGTGTC 57.450 47.619 0.00 0.00 0.00 3.67
584 596 2.540383 TCATCCTACCTGCTTGTGTCT 58.460 47.619 0.00 0.00 0.00 3.41
585 597 2.234661 TCATCCTACCTGCTTGTGTCTG 59.765 50.000 0.00 0.00 0.00 3.51
586 598 1.717032 TCCTACCTGCTTGTGTCTGT 58.283 50.000 0.00 0.00 0.00 3.41
587 599 1.344438 TCCTACCTGCTTGTGTCTGTG 59.656 52.381 0.00 0.00 0.00 3.66
588 600 1.151668 CTACCTGCTTGTGTCTGTGC 58.848 55.000 0.00 0.00 0.00 4.57
589 601 0.467804 TACCTGCTTGTGTCTGTGCA 59.532 50.000 0.00 0.00 0.00 4.57
590 602 0.394216 ACCTGCTTGTGTCTGTGCAA 60.394 50.000 0.00 0.00 34.90 4.08
591 603 0.029834 CCTGCTTGTGTCTGTGCAAC 59.970 55.000 0.00 0.00 34.90 4.17
592 604 1.019673 CTGCTTGTGTCTGTGCAACT 58.980 50.000 0.00 0.00 38.04 3.16
593 605 1.402968 CTGCTTGTGTCTGTGCAACTT 59.597 47.619 0.00 0.00 38.04 2.66
594 606 1.132834 TGCTTGTGTCTGTGCAACTTG 59.867 47.619 0.00 0.00 38.04 3.16
595 607 1.401552 GCTTGTGTCTGTGCAACTTGA 59.598 47.619 0.00 0.00 38.04 3.02
596 608 2.792542 GCTTGTGTCTGTGCAACTTGAC 60.793 50.000 0.00 0.00 39.88 3.18
597 609 2.401583 TGTGTCTGTGCAACTTGACT 57.598 45.000 0.00 0.00 40.04 3.41
598 610 2.710377 TGTGTCTGTGCAACTTGACTT 58.290 42.857 0.00 0.00 40.04 3.01
599 611 2.677836 TGTGTCTGTGCAACTTGACTTC 59.322 45.455 0.00 0.00 40.04 3.01
600 612 2.032178 GTGTCTGTGCAACTTGACTTCC 59.968 50.000 0.00 0.00 40.04 3.46
601 613 2.288666 GTCTGTGCAACTTGACTTCCA 58.711 47.619 0.00 0.00 37.77 3.53
602 614 2.880890 GTCTGTGCAACTTGACTTCCAT 59.119 45.455 0.00 0.00 37.77 3.41
603 615 2.880268 TCTGTGCAACTTGACTTCCATG 59.120 45.455 0.00 0.00 38.04 3.66
604 616 1.955778 TGTGCAACTTGACTTCCATGG 59.044 47.619 4.97 4.97 38.04 3.66
605 617 2.229792 GTGCAACTTGACTTCCATGGA 58.770 47.619 11.44 11.44 0.00 3.41
606 618 2.227388 GTGCAACTTGACTTCCATGGAG 59.773 50.000 15.53 11.69 0.00 3.86
607 619 2.158623 TGCAACTTGACTTCCATGGAGT 60.159 45.455 15.53 14.86 0.00 3.85
608 620 3.072330 TGCAACTTGACTTCCATGGAGTA 59.928 43.478 15.53 0.00 0.00 2.59
609 621 4.263462 TGCAACTTGACTTCCATGGAGTAT 60.263 41.667 15.53 4.25 0.00 2.12
610 622 4.095483 GCAACTTGACTTCCATGGAGTATG 59.905 45.833 15.53 9.27 36.50 2.39
611 623 5.248640 CAACTTGACTTCCATGGAGTATGT 58.751 41.667 15.53 12.35 34.87 2.29
612 624 5.091261 ACTTGACTTCCATGGAGTATGTC 57.909 43.478 15.53 19.63 34.87 3.06
613 625 4.532126 ACTTGACTTCCATGGAGTATGTCA 59.468 41.667 24.80 24.80 34.87 3.58
614 626 5.013079 ACTTGACTTCCATGGAGTATGTCAA 59.987 40.000 30.31 30.31 39.57 3.18
615 627 5.698741 TGACTTCCATGGAGTATGTCAAT 57.301 39.130 25.65 1.19 34.87 2.57
616 628 6.065976 TGACTTCCATGGAGTATGTCAATT 57.934 37.500 25.65 4.52 34.87 2.32
617 629 5.882000 TGACTTCCATGGAGTATGTCAATTG 59.118 40.000 25.65 0.00 34.87 2.32
618 630 6.065976 ACTTCCATGGAGTATGTCAATTGA 57.934 37.500 15.53 3.38 34.87 2.57
619 631 6.484288 ACTTCCATGGAGTATGTCAATTGAA 58.516 36.000 15.53 1.23 34.87 2.69
620 632 6.947733 ACTTCCATGGAGTATGTCAATTGAAA 59.052 34.615 15.53 4.96 34.87 2.69
621 633 6.757897 TCCATGGAGTATGTCAATTGAAAC 57.242 37.500 11.44 9.01 34.87 2.78
622 634 6.244654 TCCATGGAGTATGTCAATTGAAACA 58.755 36.000 11.44 6.05 34.87 2.83
623 635 6.375174 TCCATGGAGTATGTCAATTGAAACAG 59.625 38.462 11.44 0.00 34.87 3.16
624 636 6.151648 CCATGGAGTATGTCAATTGAAACAGT 59.848 38.462 10.35 0.00 34.87 3.55
625 637 7.309377 CCATGGAGTATGTCAATTGAAACAGTT 60.309 37.037 10.35 0.00 34.87 3.16
626 638 6.969366 TGGAGTATGTCAATTGAAACAGTTG 58.031 36.000 10.35 0.00 33.37 3.16
627 639 6.770303 TGGAGTATGTCAATTGAAACAGTTGA 59.230 34.615 10.35 5.78 37.66 3.18
628 640 7.284261 TGGAGTATGTCAATTGAAACAGTTGAA 59.716 33.333 10.35 3.93 40.64 2.69
629 641 8.299570 GGAGTATGTCAATTGAAACAGTTGAAT 58.700 33.333 10.35 9.14 40.64 2.57
635 647 9.515020 TGTCAATTGAAACAGTTGAATAAACTC 57.485 29.630 10.35 0.00 46.60 3.01
636 648 9.515020 GTCAATTGAAACAGTTGAATAAACTCA 57.485 29.630 10.35 0.00 46.60 3.41
654 666 9.847706 ATAAACTCATATCATAGCTAGTGTTCG 57.152 33.333 0.00 0.00 0.00 3.95
655 667 6.260870 ACTCATATCATAGCTAGTGTTCGG 57.739 41.667 0.00 0.00 0.00 4.30
656 668 5.770663 ACTCATATCATAGCTAGTGTTCGGT 59.229 40.000 0.00 0.00 0.00 4.69
657 669 6.940867 ACTCATATCATAGCTAGTGTTCGGTA 59.059 38.462 0.00 0.00 0.00 4.02
658 670 7.447545 ACTCATATCATAGCTAGTGTTCGGTAA 59.552 37.037 0.00 0.00 0.00 2.85
659 671 8.349568 TCATATCATAGCTAGTGTTCGGTAAT 57.650 34.615 0.00 0.00 0.00 1.89
660 672 8.803235 TCATATCATAGCTAGTGTTCGGTAATT 58.197 33.333 0.00 0.00 0.00 1.40
661 673 8.864024 CATATCATAGCTAGTGTTCGGTAATTG 58.136 37.037 0.00 0.00 0.00 2.32
662 674 5.597806 TCATAGCTAGTGTTCGGTAATTGG 58.402 41.667 0.00 0.00 0.00 3.16
663 675 3.975168 AGCTAGTGTTCGGTAATTGGT 57.025 42.857 0.00 0.00 0.00 3.67
664 676 6.321945 TCATAGCTAGTGTTCGGTAATTGGTA 59.678 38.462 0.00 0.00 0.00 3.25
665 677 5.007385 AGCTAGTGTTCGGTAATTGGTAG 57.993 43.478 0.00 0.00 0.00 3.18
666 678 3.554731 GCTAGTGTTCGGTAATTGGTAGC 59.445 47.826 0.00 0.00 0.00 3.58
667 679 3.975168 AGTGTTCGGTAATTGGTAGCT 57.025 42.857 0.00 0.00 0.00 3.32
668 680 4.281898 AGTGTTCGGTAATTGGTAGCTT 57.718 40.909 0.00 0.00 0.00 3.74
669 681 4.000988 AGTGTTCGGTAATTGGTAGCTTG 58.999 43.478 0.00 0.00 0.00 4.01
670 682 2.745281 TGTTCGGTAATTGGTAGCTTGC 59.255 45.455 0.00 0.00 0.00 4.01
671 683 2.745281 GTTCGGTAATTGGTAGCTTGCA 59.255 45.455 0.00 0.00 0.00 4.08
672 684 3.275617 TCGGTAATTGGTAGCTTGCAT 57.724 42.857 0.00 0.00 0.00 3.96
673 685 4.409718 TCGGTAATTGGTAGCTTGCATA 57.590 40.909 0.00 0.00 0.00 3.14
674 686 4.968259 TCGGTAATTGGTAGCTTGCATAT 58.032 39.130 0.00 0.00 0.00 1.78
675 687 6.104146 TCGGTAATTGGTAGCTTGCATATA 57.896 37.500 0.00 0.00 0.00 0.86
676 688 5.929992 TCGGTAATTGGTAGCTTGCATATAC 59.070 40.000 0.00 0.00 0.00 1.47
677 689 5.699001 CGGTAATTGGTAGCTTGCATATACA 59.301 40.000 0.00 0.00 0.00 2.29
678 690 6.128553 CGGTAATTGGTAGCTTGCATATACAG 60.129 42.308 0.00 0.00 0.00 2.74
679 691 6.149474 GGTAATTGGTAGCTTGCATATACAGG 59.851 42.308 0.00 0.00 0.00 4.00
680 692 5.567037 ATTGGTAGCTTGCATATACAGGA 57.433 39.130 0.00 0.00 0.00 3.86
685 697 4.608948 AGCTTGCATATACAGGACCTAC 57.391 45.455 0.00 0.00 0.00 3.18
696 708 3.534721 GGACCTACCTGCTTGTGTC 57.465 57.895 0.00 0.00 35.41 3.67
734 746 6.915544 TTGACTTGCATAGAAGATGTCATC 57.084 37.500 4.52 4.52 33.80 2.92
735 747 5.045872 TGACTTGCATAGAAGATGTCATCG 58.954 41.667 7.18 0.00 0.00 3.84
736 748 5.163519 TGACTTGCATAGAAGATGTCATCGA 60.164 40.000 7.18 0.00 0.00 3.59
737 749 5.664457 ACTTGCATAGAAGATGTCATCGAA 58.336 37.500 7.18 0.00 0.00 3.71
738 750 5.752472 ACTTGCATAGAAGATGTCATCGAAG 59.248 40.000 7.18 0.00 0.00 3.79
739 751 5.268118 TGCATAGAAGATGTCATCGAAGT 57.732 39.130 7.18 0.00 0.00 3.01
747 759 6.809196 AGAAGATGTCATCGAAGTTGAACTAC 59.191 38.462 7.18 0.00 0.00 2.73
756 768 9.140286 TCATCGAAGTTGAACTACTTGAATAAG 57.860 33.333 0.00 0.00 38.43 1.73
760 772 7.116376 CGAAGTTGAACTACTTGAATAAGCTCA 59.884 37.037 0.00 0.00 38.43 4.26
761 773 8.854614 AAGTTGAACTACTTGAATAAGCTCAT 57.145 30.769 0.00 0.00 37.00 2.90
772 784 8.213679 ACTTGAATAAGCTCATATCTTAGCCAA 58.786 33.333 0.00 0.00 39.64 4.52
774 786 9.578576 TTGAATAAGCTCATATCTTAGCCAATT 57.421 29.630 0.00 0.00 39.64 2.32
780 792 8.558973 AGCTCATATCTTAGCCAATTTATGAC 57.441 34.615 0.00 0.00 39.64 3.06
805 817 7.720957 ACAATTGGAAGCACTTGCATATATAGA 59.279 33.333 10.83 0.00 45.16 1.98
858 870 6.266168 TGTAATAGTTTGGCATTCTTGTGG 57.734 37.500 0.00 0.00 0.00 4.17
888 901 4.950050 ACCTTGCTAGAGTGAAATATCCG 58.050 43.478 0.00 0.00 0.00 4.18
1143 1157 3.323243 GCAGAAGCACGGTTAGTTCTAA 58.677 45.455 0.00 0.00 41.58 2.10
1148 1164 4.595762 AGCACGGTTAGTTCTAAACTGA 57.404 40.909 2.65 0.00 42.84 3.41
1152 1168 6.589139 AGCACGGTTAGTTCTAAACTGAATAC 59.411 38.462 2.65 0.00 42.84 1.89
1153 1169 6.453396 GCACGGTTAGTTCTAAACTGAATACG 60.453 42.308 2.65 3.69 42.84 3.06
1158 1174 7.411588 GGTTAGTTCTAAACTGAATACGCTGTG 60.412 40.741 2.65 0.00 42.84 3.66
1160 1176 5.634020 AGTTCTAAACTGAATACGCTGTGTC 59.366 40.000 0.00 0.00 41.01 3.67
1161 1177 5.386958 TCTAAACTGAATACGCTGTGTCT 57.613 39.130 0.00 0.00 0.00 3.41
1203 1232 6.004574 TCTGTAGCTGACTCTGTTCTCTTTA 58.995 40.000 0.00 0.00 0.00 1.85
1232 1261 4.270325 GGATACATTGGCGAGTTTGAGTAC 59.730 45.833 0.00 0.00 0.00 2.73
1622 1681 7.614124 AAATGGAAAATGGAAAATTCGATGG 57.386 32.000 0.00 0.00 0.00 3.51
1738 1798 4.661222 TGGAATCTGTTATGCACTTTGGA 58.339 39.130 0.00 0.00 0.00 3.53
1788 1848 2.484264 GCTGTGCCTGTCGTTAATTCTT 59.516 45.455 0.00 0.00 0.00 2.52
1825 1885 5.971202 GCAATATTATGTTGTTCCGTTGAGG 59.029 40.000 3.79 0.00 42.97 3.86
1919 1979 7.031372 TCATGCTTAATTGTTGATCTTTGAGC 58.969 34.615 0.00 0.00 0.00 4.26
1981 2049 3.817084 TGCTGGTGATTTGCATAGATAGC 59.183 43.478 0.00 0.00 0.00 2.97
1991 2059 3.879998 TGCATAGATAGCCGGTTGAAAA 58.120 40.909 1.90 0.00 0.00 2.29
1994 2062 5.359576 TGCATAGATAGCCGGTTGAAAATTT 59.640 36.000 1.90 0.00 0.00 1.82
1995 2063 6.127479 TGCATAGATAGCCGGTTGAAAATTTT 60.127 34.615 2.28 2.28 0.00 1.82
2038 2108 3.861689 CCTTCTTAACCGTCGGATTACAC 59.138 47.826 20.51 0.00 0.00 2.90
2058 2133 1.533625 CTCCCAGCCGTTTGATTTCA 58.466 50.000 0.00 0.00 0.00 2.69
2078 2153 2.629617 CAGATGGCCAACTTTTTCACCT 59.370 45.455 13.75 0.00 0.00 4.00
2080 2155 1.118838 TGGCCAACTTTTTCACCTGG 58.881 50.000 0.61 0.00 0.00 4.45
2081 2156 3.289128 GCCAACTTTTTCACCTGGC 57.711 52.632 0.00 0.00 45.27 4.85
2087 2162 2.456577 ACTTTTTCACCTGGCACACTT 58.543 42.857 0.00 0.00 0.00 3.16
2089 2164 1.398692 TTTTCACCTGGCACACTTCC 58.601 50.000 0.00 0.00 0.00 3.46
2106 2184 2.746375 CCTCCTACGGCCTTGGCAT 61.746 63.158 14.04 3.55 0.00 4.40
2116 2194 1.892338 CCTTGGCATTGGCGATGTT 59.108 52.632 15.93 0.00 42.47 2.71
2134 2212 1.781025 TTCTTGAAGCACCAACGCCG 61.781 55.000 0.00 0.00 0.00 6.46
2135 2213 3.879351 CTTGAAGCACCAACGCCGC 62.879 63.158 0.00 0.00 0.00 6.53
2136 2214 4.927782 TGAAGCACCAACGCCGCT 62.928 61.111 0.00 0.00 37.68 5.52
2151 2229 4.666253 GCTCCCTGCAAGTGGGCA 62.666 66.667 4.59 0.00 44.23 5.36
2152 2230 2.674380 CTCCCTGCAAGTGGGCAC 60.674 66.667 4.59 0.00 44.23 5.01
2153 2231 3.496309 CTCCCTGCAAGTGGGCACA 62.496 63.158 4.59 0.00 44.23 4.57
2154 2232 2.521465 CCCTGCAAGTGGGCACAA 60.521 61.111 0.00 0.00 39.25 3.33
2155 2233 2.730094 CCTGCAAGTGGGCACAAC 59.270 61.111 0.00 0.00 39.25 3.32
2156 2234 2.126596 CCTGCAAGTGGGCACAACA 61.127 57.895 0.00 0.00 39.25 3.33
2157 2235 1.066257 CTGCAAGTGGGCACAACAC 59.934 57.895 0.00 0.00 39.25 3.32
2161 2239 2.195683 AGTGGGCACAACACTGGG 59.804 61.111 0.00 0.00 46.67 4.45
2162 2240 2.194597 GTGGGCACAACACTGGGA 59.805 61.111 0.00 0.00 35.98 4.37
2163 2241 1.898574 GTGGGCACAACACTGGGAG 60.899 63.158 0.00 0.00 35.98 4.30
2164 2242 2.282462 GGGCACAACACTGGGAGG 60.282 66.667 0.00 0.00 0.00 4.30
2165 2243 2.515901 GGCACAACACTGGGAGGT 59.484 61.111 0.00 0.00 0.00 3.85
2166 2244 1.152756 GGCACAACACTGGGAGGTT 60.153 57.895 0.00 0.00 0.00 3.50
2168 2246 2.032981 CACAACACTGGGAGGTTGC 58.967 57.895 4.57 0.00 46.31 4.17
2169 2247 0.466189 CACAACACTGGGAGGTTGCT 60.466 55.000 4.57 0.00 46.31 3.91
2170 2248 0.466189 ACAACACTGGGAGGTTGCTG 60.466 55.000 4.57 0.00 46.31 4.41
2171 2249 1.529244 AACACTGGGAGGTTGCTGC 60.529 57.895 0.00 0.00 0.00 5.25
2172 2250 2.113774 CACTGGGAGGTTGCTGCA 59.886 61.111 0.00 0.00 0.00 4.41
2173 2251 2.113986 ACTGGGAGGTTGCTGCAC 59.886 61.111 0.00 0.00 0.00 4.57
2174 2252 2.433446 CTGGGAGGTTGCTGCACT 59.567 61.111 0.00 0.00 0.00 4.40
2175 2253 1.970114 CTGGGAGGTTGCTGCACTG 60.970 63.158 0.00 0.00 0.00 3.66
2176 2254 2.674380 GGGAGGTTGCTGCACTGG 60.674 66.667 0.00 0.00 0.00 4.00
2177 2255 2.674380 GGAGGTTGCTGCACTGGG 60.674 66.667 0.00 0.00 0.00 4.45
2178 2256 2.674380 GAGGTTGCTGCACTGGGG 60.674 66.667 0.00 0.00 0.00 4.96
2179 2257 4.982701 AGGTTGCTGCACTGGGGC 62.983 66.667 0.00 0.00 0.00 5.80
2181 2259 4.982701 GTTGCTGCACTGGGGCCT 62.983 66.667 0.00 0.00 0.00 5.19
2182 2260 4.223125 TTGCTGCACTGGGGCCTT 62.223 61.111 0.00 0.00 0.00 4.35
2183 2261 4.666253 TGCTGCACTGGGGCCTTC 62.666 66.667 0.84 0.00 0.00 3.46
2205 2283 6.073447 TCCCATATAAGTGGTGATGTTGTT 57.927 37.500 0.00 0.00 37.57 2.83
2206 2284 6.489603 TCCCATATAAGTGGTGATGTTGTTT 58.510 36.000 0.00 0.00 37.57 2.83
2210 2288 1.995376 AGTGGTGATGTTGTTTCCCC 58.005 50.000 0.00 0.00 0.00 4.81
2212 2290 2.158325 AGTGGTGATGTTGTTTCCCCAT 60.158 45.455 0.00 0.00 0.00 4.00
2219 2297 1.203001 TGTTGTTTCCCCATCCCAGAC 60.203 52.381 0.00 0.00 0.00 3.51
2246 2325 1.977594 CTTTGCATGGTACCGGCGTC 61.978 60.000 19.73 3.78 0.00 5.19
2296 2389 2.353579 TGATGCATTTGCGACAGAGATG 59.646 45.455 0.00 0.00 45.83 2.90
2299 2392 1.376543 CATTTGCGACAGAGATGGCT 58.623 50.000 0.00 0.00 0.00 4.75
2302 2395 0.894835 TTGCGACAGAGATGGCTACA 59.105 50.000 0.00 0.00 0.00 2.74
2304 2397 1.482182 TGCGACAGAGATGGCTACATT 59.518 47.619 0.00 0.00 37.47 2.71
2317 2410 0.814010 CTACATTGGCGGTGCTACCC 60.814 60.000 0.00 0.00 33.75 3.69
2419 2911 2.809601 GATCACAGCGTCGGCGTT 60.810 61.111 12.58 0.10 46.35 4.84
2443 2935 3.713288 TCACTTCAAACCTGTAGACACG 58.287 45.455 0.00 0.00 0.00 4.49
2470 2976 2.223525 CCGGATCTACCACTCGAGTTTC 60.224 54.545 17.26 6.14 38.90 2.78
2477 2983 1.897802 ACCACTCGAGTTTCCCGTATT 59.102 47.619 17.26 0.00 0.00 1.89
2490 2996 4.563337 TCCCGTATTCAAGACATAGACG 57.437 45.455 0.00 0.00 0.00 4.18
2521 3027 0.317479 ACTCGGGAGTGCTACACAAC 59.683 55.000 0.00 0.00 40.75 3.32
2522 3028 0.317160 CTCGGGAGTGCTACACAACA 59.683 55.000 0.00 0.00 36.74 3.33
2523 3029 0.032952 TCGGGAGTGCTACACAACAC 59.967 55.000 0.00 0.00 36.74 3.32
2524 3030 0.249699 CGGGAGTGCTACACAACACA 60.250 55.000 0.00 0.00 39.30 3.72
2536 3049 4.434713 ACACAACACAACTTTTCCAGTC 57.565 40.909 0.00 0.00 32.94 3.51
2550 3063 2.795329 TCCAGTCCTGAAAAATCAGCC 58.205 47.619 0.28 0.00 36.46 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.623811 GCCACACTGGGAGAAACTAGA 59.376 52.381 0.00 0.00 38.19 2.43
1 2 1.625818 AGCCACACTGGGAGAAACTAG 59.374 52.381 0.00 0.00 38.19 2.57
2 3 1.729586 AGCCACACTGGGAGAAACTA 58.270 50.000 0.00 0.00 38.19 2.24
3 4 0.846693 AAGCCACACTGGGAGAAACT 59.153 50.000 0.00 0.00 38.19 2.66
4 5 2.561478 TAAGCCACACTGGGAGAAAC 57.439 50.000 0.00 0.00 38.19 2.78
5 6 2.375174 ACATAAGCCACACTGGGAGAAA 59.625 45.455 0.00 0.00 38.19 2.52
6 7 1.985159 ACATAAGCCACACTGGGAGAA 59.015 47.619 0.00 0.00 38.19 2.87
7 8 1.278985 CACATAAGCCACACTGGGAGA 59.721 52.381 0.00 0.00 38.19 3.71
8 9 1.003580 ACACATAAGCCACACTGGGAG 59.996 52.381 0.00 0.00 38.19 4.30
9 10 1.064003 ACACATAAGCCACACTGGGA 58.936 50.000 0.00 0.00 38.19 4.37
10 11 1.541147 CAACACATAAGCCACACTGGG 59.459 52.381 0.00 0.00 38.19 4.45
11 12 2.030893 CACAACACATAAGCCACACTGG 60.031 50.000 0.00 0.00 41.55 4.00
12 13 2.877786 TCACAACACATAAGCCACACTG 59.122 45.455 0.00 0.00 0.00 3.66
13 14 3.141398 CTCACAACACATAAGCCACACT 58.859 45.455 0.00 0.00 0.00 3.55
14 15 2.878406 ACTCACAACACATAAGCCACAC 59.122 45.455 0.00 0.00 0.00 3.82
15 16 3.207265 ACTCACAACACATAAGCCACA 57.793 42.857 0.00 0.00 0.00 4.17
16 17 4.094887 CCATACTCACAACACATAAGCCAC 59.905 45.833 0.00 0.00 0.00 5.01
17 18 4.260985 CCATACTCACAACACATAAGCCA 58.739 43.478 0.00 0.00 0.00 4.75
18 19 3.627577 CCCATACTCACAACACATAAGCC 59.372 47.826 0.00 0.00 0.00 4.35
19 20 4.513442 TCCCATACTCACAACACATAAGC 58.487 43.478 0.00 0.00 0.00 3.09
20 21 5.008019 GCATCCCATACTCACAACACATAAG 59.992 44.000 0.00 0.00 0.00 1.73
21 22 4.881273 GCATCCCATACTCACAACACATAA 59.119 41.667 0.00 0.00 0.00 1.90
22 23 4.080638 TGCATCCCATACTCACAACACATA 60.081 41.667 0.00 0.00 0.00 2.29
23 24 3.282021 GCATCCCATACTCACAACACAT 58.718 45.455 0.00 0.00 0.00 3.21
24 25 2.039613 TGCATCCCATACTCACAACACA 59.960 45.455 0.00 0.00 0.00 3.72
25 26 2.710377 TGCATCCCATACTCACAACAC 58.290 47.619 0.00 0.00 0.00 3.32
26 27 3.650281 ATGCATCCCATACTCACAACA 57.350 42.857 0.00 0.00 30.69 3.33
27 28 3.067180 CCAATGCATCCCATACTCACAAC 59.933 47.826 0.00 0.00 32.67 3.32
28 29 3.289836 CCAATGCATCCCATACTCACAA 58.710 45.455 0.00 0.00 32.67 3.33
29 30 2.241941 ACCAATGCATCCCATACTCACA 59.758 45.455 0.00 0.00 32.67 3.58
30 31 2.936202 ACCAATGCATCCCATACTCAC 58.064 47.619 0.00 0.00 32.67 3.51
31 32 3.668141 AACCAATGCATCCCATACTCA 57.332 42.857 0.00 0.00 32.67 3.41
32 33 3.953612 TCAAACCAATGCATCCCATACTC 59.046 43.478 0.00 0.00 32.67 2.59
33 34 3.979911 TCAAACCAATGCATCCCATACT 58.020 40.909 0.00 0.00 32.67 2.12
34 35 4.586001 AGATCAAACCAATGCATCCCATAC 59.414 41.667 0.00 0.00 32.67 2.39
35 36 4.585581 CAGATCAAACCAATGCATCCCATA 59.414 41.667 0.00 0.00 32.67 2.74
36 37 3.386726 CAGATCAAACCAATGCATCCCAT 59.613 43.478 0.00 0.00 35.06 4.00
37 38 2.761767 CAGATCAAACCAATGCATCCCA 59.238 45.455 0.00 0.00 0.00 4.37
38 39 2.101917 CCAGATCAAACCAATGCATCCC 59.898 50.000 0.00 0.00 0.00 3.85
39 40 2.101917 CCCAGATCAAACCAATGCATCC 59.898 50.000 0.00 0.00 0.00 3.51
40 41 3.025978 TCCCAGATCAAACCAATGCATC 58.974 45.455 0.00 0.00 0.00 3.91
41 42 3.028850 CTCCCAGATCAAACCAATGCAT 58.971 45.455 0.00 0.00 0.00 3.96
42 43 2.449464 CTCCCAGATCAAACCAATGCA 58.551 47.619 0.00 0.00 0.00 3.96
43 44 1.135721 GCTCCCAGATCAAACCAATGC 59.864 52.381 0.00 0.00 0.00 3.56
44 45 1.402968 CGCTCCCAGATCAAACCAATG 59.597 52.381 0.00 0.00 0.00 2.82
45 46 1.281867 TCGCTCCCAGATCAAACCAAT 59.718 47.619 0.00 0.00 0.00 3.16
46 47 0.690192 TCGCTCCCAGATCAAACCAA 59.310 50.000 0.00 0.00 0.00 3.67
47 48 0.911769 ATCGCTCCCAGATCAAACCA 59.088 50.000 0.00 0.00 0.00 3.67
48 49 1.303309 CATCGCTCCCAGATCAAACC 58.697 55.000 0.00 0.00 0.00 3.27
49 50 2.029838 ACATCGCTCCCAGATCAAAC 57.970 50.000 0.00 0.00 0.00 2.93
50 51 2.103094 CCTACATCGCTCCCAGATCAAA 59.897 50.000 0.00 0.00 0.00 2.69
51 52 1.688735 CCTACATCGCTCCCAGATCAA 59.311 52.381 0.00 0.00 0.00 2.57
52 53 1.133482 TCCTACATCGCTCCCAGATCA 60.133 52.381 0.00 0.00 0.00 2.92
53 54 1.621992 TCCTACATCGCTCCCAGATC 58.378 55.000 0.00 0.00 0.00 2.75
54 55 2.175202 GATCCTACATCGCTCCCAGAT 58.825 52.381 0.00 0.00 0.00 2.90
55 56 1.133482 TGATCCTACATCGCTCCCAGA 60.133 52.381 0.00 0.00 0.00 3.86
56 57 1.332195 TGATCCTACATCGCTCCCAG 58.668 55.000 0.00 0.00 0.00 4.45
57 58 1.688735 CTTGATCCTACATCGCTCCCA 59.311 52.381 0.00 0.00 0.00 4.37
58 59 1.964223 TCTTGATCCTACATCGCTCCC 59.036 52.381 0.00 0.00 0.00 4.30
59 60 2.609244 GCTCTTGATCCTACATCGCTCC 60.609 54.545 0.00 0.00 0.00 4.70
60 61 2.035193 TGCTCTTGATCCTACATCGCTC 59.965 50.000 0.00 0.00 0.00 5.03
61 62 2.034878 TGCTCTTGATCCTACATCGCT 58.965 47.619 0.00 0.00 0.00 4.93
62 63 2.515926 TGCTCTTGATCCTACATCGC 57.484 50.000 0.00 0.00 0.00 4.58
63 64 4.047822 GAGTTGCTCTTGATCCTACATCG 58.952 47.826 0.00 0.00 0.00 3.84
64 65 5.275067 AGAGTTGCTCTTGATCCTACATC 57.725 43.478 0.00 0.00 37.60 3.06
65 66 5.896678 ACTAGAGTTGCTCTTGATCCTACAT 59.103 40.000 12.91 0.00 41.50 2.29
66 67 5.265191 ACTAGAGTTGCTCTTGATCCTACA 58.735 41.667 12.91 0.00 41.50 2.74
67 68 5.845391 ACTAGAGTTGCTCTTGATCCTAC 57.155 43.478 12.91 0.00 41.50 3.18
91 92 6.875076 TCAATAGTTAACAAGGGCTCTCTAC 58.125 40.000 8.61 0.00 0.00 2.59
108 109 5.401531 AACACCTACACGACATCAATAGT 57.598 39.130 0.00 0.00 0.00 2.12
114 115 3.432252 CAGGAAAACACCTACACGACATC 59.568 47.826 0.00 0.00 38.32 3.06
115 116 3.399330 CAGGAAAACACCTACACGACAT 58.601 45.455 0.00 0.00 38.32 3.06
159 160 6.688385 CGCACCAAACAATGATAAATCTACAG 59.312 38.462 0.00 0.00 0.00 2.74
162 163 6.751514 ACGCACCAAACAATGATAAATCTA 57.248 33.333 0.00 0.00 0.00 1.98
172 173 5.003804 AGAGATTCTAACGCACCAAACAAT 58.996 37.500 0.00 0.00 0.00 2.71
174 175 4.002906 AGAGATTCTAACGCACCAAACA 57.997 40.909 0.00 0.00 0.00 2.83
219 220 1.243902 TCACAGGCCGGACAAAATTC 58.756 50.000 11.69 0.00 0.00 2.17
228 229 3.443045 GCACCAATCACAGGCCGG 61.443 66.667 0.00 0.00 0.00 6.13
243 246 2.017138 TTTCTCGCATTACATCGGCA 57.983 45.000 0.00 0.00 0.00 5.69
294 298 3.814283 GCATCTCCTTGGCTAATCTCAAG 59.186 47.826 0.00 0.00 39.83 3.02
295 299 3.200605 TGCATCTCCTTGGCTAATCTCAA 59.799 43.478 0.00 0.00 0.00 3.02
297 301 3.137533 GTGCATCTCCTTGGCTAATCTC 58.862 50.000 0.00 0.00 0.00 2.75
304 308 0.610232 AACAGGTGCATCTCCTTGGC 60.610 55.000 0.00 0.00 32.37 4.52
309 313 3.642705 GTTCAAAAACAGGTGCATCTCC 58.357 45.455 0.00 0.00 35.36 3.71
326 330 3.388308 CCAAAACATTTCATGGCGTTCA 58.612 40.909 0.00 0.00 33.60 3.18
367 378 0.188342 ACCACCCAAGCAAGGTTCAT 59.812 50.000 0.00 0.00 34.56 2.57
384 395 3.256631 ACACAGAGCATGGAAAAATGACC 59.743 43.478 0.00 0.00 0.00 4.02
392 403 4.256110 CAGATTACACACAGAGCATGGAA 58.744 43.478 0.00 0.00 0.00 3.53
393 404 3.261643 ACAGATTACACACAGAGCATGGA 59.738 43.478 0.00 0.00 0.00 3.41
404 415 6.710278 TCATGATTCCTGAACAGATTACACA 58.290 36.000 3.19 0.00 0.00 3.72
433 444 1.924524 ACACGTGAACTGACAGAAACG 59.075 47.619 25.01 19.98 37.09 3.60
436 447 6.128661 GCATATAAACACGTGAACTGACAGAA 60.129 38.462 25.01 0.00 0.00 3.02
441 452 7.892778 TTAAGCATATAAACACGTGAACTGA 57.107 32.000 25.01 4.55 0.00 3.41
465 476 9.959721 AACAAATCAACTAGGTAGATACACAAT 57.040 29.630 0.00 0.00 0.00 2.71
475 486 8.447833 CGAAGCATTTAACAAATCAACTAGGTA 58.552 33.333 0.00 0.00 0.00 3.08
498 509 2.401583 ATAATGCACTGGACTGCGAA 57.598 45.000 0.00 0.00 40.31 4.70
501 512 4.644103 AATGAATAATGCACTGGACTGC 57.356 40.909 0.00 0.00 37.70 4.40
505 516 6.397272 GTTCCAAAATGAATAATGCACTGGA 58.603 36.000 0.00 0.00 0.00 3.86
507 518 5.863397 ACGTTCCAAAATGAATAATGCACTG 59.137 36.000 0.00 0.00 0.00 3.66
515 526 7.447374 AGTGAATCACGTTCCAAAATGAATA 57.553 32.000 7.83 0.00 39.64 1.75
573 585 1.019673 AGTTGCACAGACACAAGCAG 58.980 50.000 0.00 0.00 38.35 4.24
574 586 1.132834 CAAGTTGCACAGACACAAGCA 59.867 47.619 0.00 0.00 34.79 3.91
575 587 1.401552 TCAAGTTGCACAGACACAAGC 59.598 47.619 0.00 0.00 0.00 4.01
576 588 2.679837 AGTCAAGTTGCACAGACACAAG 59.320 45.455 0.00 0.00 33.56 3.16
577 589 2.710377 AGTCAAGTTGCACAGACACAA 58.290 42.857 0.00 0.00 33.56 3.33
578 590 2.401583 AGTCAAGTTGCACAGACACA 57.598 45.000 0.00 0.00 33.56 3.72
579 591 2.032178 GGAAGTCAAGTTGCACAGACAC 59.968 50.000 0.00 0.00 33.56 3.67
580 592 2.288666 GGAAGTCAAGTTGCACAGACA 58.711 47.619 0.00 0.00 33.56 3.41
581 593 2.288666 TGGAAGTCAAGTTGCACAGAC 58.711 47.619 0.00 0.00 0.00 3.51
582 594 2.708216 TGGAAGTCAAGTTGCACAGA 57.292 45.000 0.00 0.00 0.00 3.41
583 595 2.030540 CCATGGAAGTCAAGTTGCACAG 60.031 50.000 5.56 0.00 29.72 3.66
584 596 1.955778 CCATGGAAGTCAAGTTGCACA 59.044 47.619 5.56 0.00 29.72 4.57
585 597 2.227388 CTCCATGGAAGTCAAGTTGCAC 59.773 50.000 17.00 0.00 29.72 4.57
586 598 2.158623 ACTCCATGGAAGTCAAGTTGCA 60.159 45.455 17.00 0.00 31.76 4.08
587 599 2.508526 ACTCCATGGAAGTCAAGTTGC 58.491 47.619 17.00 0.00 0.00 4.17
588 600 5.248640 ACATACTCCATGGAAGTCAAGTTG 58.751 41.667 17.00 11.54 39.13 3.16
589 601 5.013079 TGACATACTCCATGGAAGTCAAGTT 59.987 40.000 24.91 4.80 39.13 2.66
590 602 4.532126 TGACATACTCCATGGAAGTCAAGT 59.468 41.667 24.91 17.47 39.13 3.16
591 603 5.089970 TGACATACTCCATGGAAGTCAAG 57.910 43.478 24.91 13.46 39.13 3.02
592 604 5.497464 TTGACATACTCCATGGAAGTCAA 57.503 39.130 29.16 29.16 40.81 3.18
593 605 5.698741 ATTGACATACTCCATGGAAGTCA 57.301 39.130 24.01 24.01 39.13 3.41
594 606 6.115446 TCAATTGACATACTCCATGGAAGTC 58.885 40.000 17.00 19.44 39.13 3.01
595 607 6.065976 TCAATTGACATACTCCATGGAAGT 57.934 37.500 17.00 17.26 39.13 3.01
596 608 7.094248 TGTTTCAATTGACATACTCCATGGAAG 60.094 37.037 17.00 12.31 39.13 3.46
597 609 6.718912 TGTTTCAATTGACATACTCCATGGAA 59.281 34.615 17.00 1.47 39.13 3.53
598 610 6.244654 TGTTTCAATTGACATACTCCATGGA 58.755 36.000 15.27 15.27 39.13 3.41
599 611 6.151648 ACTGTTTCAATTGACATACTCCATGG 59.848 38.462 7.89 4.97 39.13 3.66
600 612 7.149569 ACTGTTTCAATTGACATACTCCATG 57.850 36.000 7.89 0.00 40.78 3.66
601 613 7.448161 TCAACTGTTTCAATTGACATACTCCAT 59.552 33.333 7.89 0.00 0.00 3.41
602 614 6.770303 TCAACTGTTTCAATTGACATACTCCA 59.230 34.615 7.89 0.00 0.00 3.86
603 615 7.202016 TCAACTGTTTCAATTGACATACTCC 57.798 36.000 7.89 0.00 0.00 3.85
609 621 9.515020 GAGTTTATTCAACTGTTTCAATTGACA 57.485 29.630 7.89 3.63 46.53 3.58
610 622 9.515020 TGAGTTTATTCAACTGTTTCAATTGAC 57.485 29.630 7.89 0.00 46.53 3.18
628 640 9.847706 CGAACACTAGCTATGATATGAGTTTAT 57.152 33.333 0.00 0.00 0.00 1.40
629 641 8.297426 CCGAACACTAGCTATGATATGAGTTTA 58.703 37.037 0.00 0.00 0.00 2.01
630 642 7.148641 CCGAACACTAGCTATGATATGAGTTT 58.851 38.462 0.00 0.00 0.00 2.66
631 643 6.265649 ACCGAACACTAGCTATGATATGAGTT 59.734 38.462 0.00 0.00 0.00 3.01
632 644 5.770663 ACCGAACACTAGCTATGATATGAGT 59.229 40.000 0.00 0.00 0.00 3.41
633 645 6.260870 ACCGAACACTAGCTATGATATGAG 57.739 41.667 0.00 0.00 0.00 2.90
634 646 7.754851 TTACCGAACACTAGCTATGATATGA 57.245 36.000 0.00 0.00 0.00 2.15
635 647 8.864024 CAATTACCGAACACTAGCTATGATATG 58.136 37.037 0.00 0.00 0.00 1.78
636 648 8.035394 CCAATTACCGAACACTAGCTATGATAT 58.965 37.037 0.00 0.00 0.00 1.63
637 649 7.014905 ACCAATTACCGAACACTAGCTATGATA 59.985 37.037 0.00 0.00 0.00 2.15
638 650 6.183360 ACCAATTACCGAACACTAGCTATGAT 60.183 38.462 0.00 0.00 0.00 2.45
639 651 5.128171 ACCAATTACCGAACACTAGCTATGA 59.872 40.000 0.00 0.00 0.00 2.15
640 652 5.357257 ACCAATTACCGAACACTAGCTATG 58.643 41.667 0.00 0.00 0.00 2.23
641 653 5.609533 ACCAATTACCGAACACTAGCTAT 57.390 39.130 0.00 0.00 0.00 2.97
642 654 5.450965 GCTACCAATTACCGAACACTAGCTA 60.451 44.000 0.00 0.00 0.00 3.32
643 655 3.975168 ACCAATTACCGAACACTAGCT 57.025 42.857 0.00 0.00 0.00 3.32
644 656 3.554731 GCTACCAATTACCGAACACTAGC 59.445 47.826 0.00 0.00 0.00 3.42
645 657 5.007385 AGCTACCAATTACCGAACACTAG 57.993 43.478 0.00 0.00 0.00 2.57
646 658 5.172934 CAAGCTACCAATTACCGAACACTA 58.827 41.667 0.00 0.00 0.00 2.74
647 659 3.975168 AGCTACCAATTACCGAACACT 57.025 42.857 0.00 0.00 0.00 3.55
648 660 3.425758 GCAAGCTACCAATTACCGAACAC 60.426 47.826 0.00 0.00 0.00 3.32
649 661 2.745281 GCAAGCTACCAATTACCGAACA 59.255 45.455 0.00 0.00 0.00 3.18
650 662 2.745281 TGCAAGCTACCAATTACCGAAC 59.255 45.455 0.00 0.00 0.00 3.95
651 663 3.060736 TGCAAGCTACCAATTACCGAA 57.939 42.857 0.00 0.00 0.00 4.30
652 664 2.772077 TGCAAGCTACCAATTACCGA 57.228 45.000 0.00 0.00 0.00 4.69
653 665 5.699001 TGTATATGCAAGCTACCAATTACCG 59.301 40.000 0.00 0.00 0.00 4.02
654 666 6.149474 CCTGTATATGCAAGCTACCAATTACC 59.851 42.308 0.00 0.00 0.00 2.85
655 667 6.934645 TCCTGTATATGCAAGCTACCAATTAC 59.065 38.462 0.00 0.00 0.00 1.89
656 668 6.934645 GTCCTGTATATGCAAGCTACCAATTA 59.065 38.462 0.00 0.00 0.00 1.40
657 669 5.765182 GTCCTGTATATGCAAGCTACCAATT 59.235 40.000 0.00 0.00 0.00 2.32
658 670 5.308825 GTCCTGTATATGCAAGCTACCAAT 58.691 41.667 0.00 0.00 0.00 3.16
659 671 4.444306 GGTCCTGTATATGCAAGCTACCAA 60.444 45.833 0.00 0.00 0.00 3.67
660 672 3.071023 GGTCCTGTATATGCAAGCTACCA 59.929 47.826 0.00 0.00 0.00 3.25
661 673 3.325135 AGGTCCTGTATATGCAAGCTACC 59.675 47.826 0.00 0.99 0.00 3.18
662 674 4.608948 AGGTCCTGTATATGCAAGCTAC 57.391 45.455 0.00 0.00 0.00 3.58
663 675 4.527038 GGTAGGTCCTGTATATGCAAGCTA 59.473 45.833 0.00 0.00 0.00 3.32
664 676 3.325135 GGTAGGTCCTGTATATGCAAGCT 59.675 47.826 0.00 0.00 0.00 3.74
665 677 3.325135 AGGTAGGTCCTGTATATGCAAGC 59.675 47.826 0.00 0.00 46.19 4.01
678 690 0.036294 GGACACAAGCAGGTAGGTCC 60.036 60.000 0.00 0.00 38.15 4.46
679 691 0.977395 AGGACACAAGCAGGTAGGTC 59.023 55.000 0.00 0.00 0.00 3.85
680 692 0.687354 CAGGACACAAGCAGGTAGGT 59.313 55.000 0.00 0.00 0.00 3.08
685 697 2.037772 AGTTCTACAGGACACAAGCAGG 59.962 50.000 0.00 0.00 0.00 4.85
696 708 4.555511 GCAAGTCAAAGCAAGTTCTACAGG 60.556 45.833 0.00 0.00 0.00 4.00
734 746 7.116376 TGAGCTTATTCAAGTAGTTCAACTTCG 59.884 37.037 0.00 0.00 37.61 3.79
735 747 8.311650 TGAGCTTATTCAAGTAGTTCAACTTC 57.688 34.615 0.00 0.00 37.61 3.01
736 748 8.854614 ATGAGCTTATTCAAGTAGTTCAACTT 57.145 30.769 0.00 0.00 40.33 2.66
747 759 8.613060 TTGGCTAAGATATGAGCTTATTCAAG 57.387 34.615 0.00 0.00 38.79 3.02
756 768 8.327941 TGTCATAAATTGGCTAAGATATGAGC 57.672 34.615 15.91 12.56 38.00 4.26
772 784 5.870978 GCAAGTGCTTCCAATTGTCATAAAT 59.129 36.000 4.43 0.00 45.88 1.40
774 786 4.280425 TGCAAGTGCTTCCAATTGTCATAA 59.720 37.500 4.43 0.00 45.88 1.90
776 788 2.629137 TGCAAGTGCTTCCAATTGTCAT 59.371 40.909 4.43 0.00 45.88 3.06
780 792 8.102800 TCTATATATGCAAGTGCTTCCAATTG 57.897 34.615 4.69 0.00 46.63 2.32
840 852 2.591923 TGCCACAAGAATGCCAAACTA 58.408 42.857 0.00 0.00 0.00 2.24
842 854 2.137523 CTTGCCACAAGAATGCCAAAC 58.862 47.619 0.97 0.00 0.00 2.93
847 859 2.162408 GGTCTACTTGCCACAAGAATGC 59.838 50.000 13.94 2.30 0.00 3.56
1143 1157 4.127171 ACAAAGACACAGCGTATTCAGTT 58.873 39.130 0.00 0.00 0.00 3.16
1148 1164 2.878406 AGCAACAAAGACACAGCGTATT 59.122 40.909 0.00 0.00 0.00 1.89
1152 1168 0.940126 AGAGCAACAAAGACACAGCG 59.060 50.000 0.00 0.00 0.00 5.18
1153 1169 2.032204 CAGAGAGCAACAAAGACACAGC 60.032 50.000 0.00 0.00 0.00 4.40
1158 1174 5.120519 CAGATTCTCAGAGAGCAACAAAGAC 59.879 44.000 0.00 0.00 0.00 3.01
1160 1176 4.996122 ACAGATTCTCAGAGAGCAACAAAG 59.004 41.667 0.00 0.00 0.00 2.77
1161 1177 4.965814 ACAGATTCTCAGAGAGCAACAAA 58.034 39.130 0.00 0.00 0.00 2.83
1203 1232 4.689612 ACTCGCCAATGTATCCTACAAT 57.310 40.909 0.00 0.00 42.76 2.71
1232 1261 2.274437 CCAGACCTGTGATCATCAACG 58.726 52.381 0.00 0.00 0.00 4.10
1622 1681 6.602406 TCCTACTAACACATCTCAGGTACTTC 59.398 42.308 0.00 0.00 34.60 3.01
1738 1798 3.922171 TTCAAACAAAGGCACCCAATT 57.078 38.095 0.00 0.00 0.00 2.32
1821 1881 3.107402 ACCTCTTCAGCATCTACCTCA 57.893 47.619 0.00 0.00 0.00 3.86
1825 1885 9.255304 CTAGATTTAAACCTCTTCAGCATCTAC 57.745 37.037 0.00 0.00 0.00 2.59
1933 2001 8.554528 AGAACATCAGAATGCAATACGATAAAG 58.445 33.333 0.00 0.00 36.26 1.85
1949 2017 3.708403 AATCACCAGCAGAACATCAGA 57.292 42.857 0.00 0.00 0.00 3.27
1951 2019 2.229543 GCAAATCACCAGCAGAACATCA 59.770 45.455 0.00 0.00 0.00 3.07
1981 2049 7.995463 TCTGAACTTTAAAATTTTCAACCGG 57.005 32.000 6.72 0.00 0.00 5.28
1991 2059 9.208022 GGCAGCTTATTTTCTGAACTTTAAAAT 57.792 29.630 0.00 0.00 36.87 1.82
1994 2062 7.524717 AGGCAGCTTATTTTCTGAACTTTAA 57.475 32.000 0.00 0.00 32.26 1.52
1995 2063 7.448469 AGAAGGCAGCTTATTTTCTGAACTTTA 59.552 33.333 0.00 0.00 32.88 1.85
2038 2108 0.811281 GAAATCAAACGGCTGGGAGG 59.189 55.000 0.00 0.00 0.00 4.30
2058 2133 2.629617 CAGGTGAAAAAGTTGGCCATCT 59.370 45.455 6.09 8.83 0.00 2.90
2078 2153 1.972198 CGTAGGAGGAAGTGTGCCA 59.028 57.895 0.00 0.00 0.00 4.92
2106 2184 1.266718 GTGCTTCAAGAACATCGCCAA 59.733 47.619 0.00 0.00 0.00 4.52
2110 2188 2.662791 CGTTGGTGCTTCAAGAACATCG 60.663 50.000 0.00 0.00 0.00 3.84
2116 2194 2.250939 CGGCGTTGGTGCTTCAAGA 61.251 57.895 0.00 0.00 34.52 3.02
2139 2217 1.066257 GTGTTGTGCCCACTTGCAG 59.934 57.895 0.00 0.00 43.02 4.41
2140 2218 1.379710 AGTGTTGTGCCCACTTGCA 60.380 52.632 0.00 0.00 40.14 4.08
2141 2219 1.066257 CAGTGTTGTGCCCACTTGC 59.934 57.895 0.00 0.00 41.10 4.01
2142 2220 1.735360 CCAGTGTTGTGCCCACTTG 59.265 57.895 0.00 0.00 41.10 3.16
2143 2221 1.455587 CCCAGTGTTGTGCCCACTT 60.456 57.895 0.00 0.00 41.10 3.16
2144 2222 2.195683 CCCAGTGTTGTGCCCACT 59.804 61.111 0.00 0.00 43.76 4.00
2145 2223 1.898574 CTCCCAGTGTTGTGCCCAC 60.899 63.158 0.00 0.00 0.00 4.61
2146 2224 2.515398 CTCCCAGTGTTGTGCCCA 59.485 61.111 0.00 0.00 0.00 5.36
2147 2225 2.282462 CCTCCCAGTGTTGTGCCC 60.282 66.667 0.00 0.00 0.00 5.36
2148 2226 1.152756 AACCTCCCAGTGTTGTGCC 60.153 57.895 0.00 0.00 0.00 5.01
2149 2227 2.032981 CAACCTCCCAGTGTTGTGC 58.967 57.895 0.00 0.00 37.62 4.57
2150 2228 0.466189 AGCAACCTCCCAGTGTTGTG 60.466 55.000 0.00 0.00 42.91 3.33
2151 2229 0.466189 CAGCAACCTCCCAGTGTTGT 60.466 55.000 0.00 0.00 42.91 3.32
2152 2230 1.799258 GCAGCAACCTCCCAGTGTTG 61.799 60.000 0.00 0.00 43.62 3.33
2153 2231 1.529244 GCAGCAACCTCCCAGTGTT 60.529 57.895 0.00 0.00 0.00 3.32
2154 2232 2.113986 GCAGCAACCTCCCAGTGT 59.886 61.111 0.00 0.00 0.00 3.55
2155 2233 2.113774 TGCAGCAACCTCCCAGTG 59.886 61.111 0.00 0.00 0.00 3.66
2156 2234 2.113986 GTGCAGCAACCTCCCAGT 59.886 61.111 0.00 0.00 0.00 4.00
2157 2235 1.970114 CAGTGCAGCAACCTCCCAG 60.970 63.158 0.00 0.00 0.00 4.45
2158 2236 2.113774 CAGTGCAGCAACCTCCCA 59.886 61.111 0.00 0.00 0.00 4.37
2159 2237 2.674380 CCAGTGCAGCAACCTCCC 60.674 66.667 0.00 0.00 0.00 4.30
2160 2238 2.674380 CCCAGTGCAGCAACCTCC 60.674 66.667 0.00 0.00 0.00 4.30
2161 2239 2.674380 CCCCAGTGCAGCAACCTC 60.674 66.667 0.00 0.00 0.00 3.85
2162 2240 4.982701 GCCCCAGTGCAGCAACCT 62.983 66.667 0.00 0.00 0.00 3.50
2164 2242 4.982701 AGGCCCCAGTGCAGCAAC 62.983 66.667 0.00 0.00 0.00 4.17
2165 2243 4.223125 AAGGCCCCAGTGCAGCAA 62.223 61.111 0.00 0.00 0.00 3.91
2166 2244 4.666253 GAAGGCCCCAGTGCAGCA 62.666 66.667 0.00 0.00 0.00 4.41
2177 2255 2.441750 TCACCACTTATATGGGAAGGCC 59.558 50.000 0.00 0.00 44.81 5.19
2178 2256 3.857157 TCACCACTTATATGGGAAGGC 57.143 47.619 0.00 0.00 44.81 4.35
2179 2257 5.310409 ACATCACCACTTATATGGGAAGG 57.690 43.478 0.00 0.00 44.81 3.46
2180 2258 6.122277 ACAACATCACCACTTATATGGGAAG 58.878 40.000 0.00 0.00 44.81 3.46
2181 2259 6.073447 ACAACATCACCACTTATATGGGAA 57.927 37.500 0.00 0.00 44.81 3.97
2182 2260 5.708736 ACAACATCACCACTTATATGGGA 57.291 39.130 0.00 0.00 44.81 4.37
2183 2261 6.183360 GGAAACAACATCACCACTTATATGGG 60.183 42.308 0.00 0.00 44.81 4.00
2184 2262 6.183360 GGGAAACAACATCACCACTTATATGG 60.183 42.308 0.00 0.00 46.10 2.74
2185 2263 6.183360 GGGGAAACAACATCACCACTTATATG 60.183 42.308 0.00 0.00 40.29 1.78
2186 2264 5.891551 GGGGAAACAACATCACCACTTATAT 59.108 40.000 0.00 0.00 40.29 0.86
2187 2265 5.222151 TGGGGAAACAACATCACCACTTATA 60.222 40.000 0.00 0.00 45.36 0.98
2188 2266 4.086457 GGGGAAACAACATCACCACTTAT 58.914 43.478 0.00 0.00 40.29 1.73
2189 2267 3.117474 TGGGGAAACAACATCACCACTTA 60.117 43.478 0.00 0.00 45.36 2.24
2205 2283 3.407967 GCGGTCTGGGATGGGGAA 61.408 66.667 0.00 0.00 0.00 3.97
2206 2284 4.731853 TGCGGTCTGGGATGGGGA 62.732 66.667 0.00 0.00 0.00 4.81
2210 2288 0.467384 AAGATCTGCGGTCTGGGATG 59.533 55.000 0.00 0.00 0.00 3.51
2212 2290 0.250234 CAAAGATCTGCGGTCTGGGA 59.750 55.000 0.00 0.00 0.00 4.37
2219 2297 1.331756 GTACCATGCAAAGATCTGCGG 59.668 52.381 0.00 0.00 45.74 5.69
2296 2389 1.153249 TAGCACCGCCAATGTAGCC 60.153 57.895 0.00 0.00 0.00 3.93
2299 2392 1.222387 GGGTAGCACCGCCAATGTA 59.778 57.895 0.00 0.00 39.83 2.29
2302 2395 1.378514 CTTGGGTAGCACCGCCAAT 60.379 57.895 0.00 0.00 39.83 3.16
2330 2424 4.154347 GGCGCTCCCTCAGTCAGG 62.154 72.222 7.64 0.00 43.01 3.86
2332 2426 3.695606 GTGGCGCTCCCTCAGTCA 61.696 66.667 7.64 0.00 0.00 3.41
2333 2427 4.803426 CGTGGCGCTCCCTCAGTC 62.803 72.222 7.64 0.00 0.00 3.51
2376 2859 4.500117 CCGGTTGTTTCTAAACGTTTTTCC 59.500 41.667 20.19 9.03 41.74 3.13
2412 2904 3.597550 TTGAAGTGATCAACGCCGA 57.402 47.368 0.00 0.00 43.08 5.54
2419 2911 5.297547 GTGTCTACAGGTTTGAAGTGATCA 58.702 41.667 0.00 0.00 35.85 2.92
2443 2935 2.223525 CGAGTGGTAGATCCGGTCTTTC 60.224 54.545 11.09 6.26 38.42 2.62
2470 2976 3.050619 GCGTCTATGTCTTGAATACGGG 58.949 50.000 0.00 0.00 0.00 5.28
2477 2983 3.951680 TCCACTATGCGTCTATGTCTTGA 59.048 43.478 0.00 0.00 0.00 3.02
2490 2996 1.227380 CCCGAGTGCTCCACTATGC 60.227 63.158 0.00 0.00 45.44 3.14
2521 3027 4.981806 TTTCAGGACTGGAAAAGTTGTG 57.018 40.909 0.00 0.00 40.07 3.33
2522 3028 5.993748 TTTTTCAGGACTGGAAAAGTTGT 57.006 34.783 13.16 0.00 41.64 3.32
2536 3049 2.437200 TTTGCGGCTGATTTTTCAGG 57.563 45.000 0.00 0.00 38.14 3.86
2550 3063 5.164012 TGTTTTTGTCATGTCAACTTTTGCG 60.164 36.000 4.81 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.