Multiple sequence alignment - TraesCS3D01G349800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G349800 chr3D 100.000 6218 0 0 1 6218 461209312 461203095 0.000000e+00 11483.0
1 TraesCS3D01G349800 chr3D 88.000 75 5 3 35 106 9440221 9440294 1.110000e-12 86.1
2 TraesCS3D01G349800 chr3A 96.643 2502 71 10 1992 4485 603798243 603795747 0.000000e+00 4143.0
3 TraesCS3D01G349800 chr3A 87.322 1475 102 41 555 1995 603799698 603798275 0.000000e+00 1609.0
4 TraesCS3D01G349800 chr3A 89.847 916 55 12 5334 6218 603794817 603793909 0.000000e+00 1142.0
5 TraesCS3D01G349800 chr3A 93.817 744 21 7 4592 5335 603795748 603795030 0.000000e+00 1096.0
6 TraesCS3D01G349800 chr3A 86.444 450 48 9 111 557 603800240 603799801 1.210000e-131 481.0
7 TraesCS3D01G349800 chr3B 95.411 2506 99 10 1992 4485 611695253 611692752 0.000000e+00 3976.0
8 TraesCS3D01G349800 chr3B 85.012 1688 129 54 267 1928 611696921 611695332 0.000000e+00 1602.0
9 TraesCS3D01G349800 chr3B 85.830 741 43 16 5242 5958 611680776 611680074 0.000000e+00 730.0
10 TraesCS3D01G349800 chr3B 92.895 380 23 2 4854 5233 611692377 611692002 3.280000e-152 549.0
11 TraesCS3D01G349800 chr3B 91.154 260 20 2 4592 4850 611692753 611692496 3.570000e-92 350.0
12 TraesCS3D01G349800 chr3B 93.805 113 5 1 4484 4596 158717307 158717197 1.070000e-37 169.0
13 TraesCS3D01G349800 chr3B 92.308 117 7 2 4484 4600 4149983 4149869 1.390000e-36 165.0
14 TraesCS3D01G349800 chr6D 87.974 2503 214 41 1992 4435 461364375 461361901 0.000000e+00 2874.0
15 TraesCS3D01G349800 chr6D 80.000 720 80 33 797 1471 461366080 461365380 2.030000e-129 473.0
16 TraesCS3D01G349800 chr6D 77.485 684 92 32 4838 5501 461361554 461360913 2.760000e-93 353.0
17 TraesCS3D01G349800 chr6D 91.133 203 17 1 4592 4793 461361834 461361632 2.210000e-69 274.0
18 TraesCS3D01G349800 chr6D 86.777 121 11 3 1024 1140 11769773 11769892 5.060000e-26 130.0
19 TraesCS3D01G349800 chr6D 100.000 52 0 0 35 86 341387066 341387117 5.130000e-16 97.1
20 TraesCS3D01G349800 chr6D 77.519 129 25 3 524 650 433605190 433605064 2.400000e-09 75.0
21 TraesCS3D01G349800 chr6B 87.620 2504 222 45 1992 4435 702834833 702832358 0.000000e+00 2826.0
22 TraesCS3D01G349800 chr6B 74.124 1341 272 49 3158 4434 21433761 21432432 9.370000e-133 484.0
23 TraesCS3D01G349800 chr6B 80.844 569 75 16 4839 5394 702832005 702831458 3.470000e-112 416.0
24 TraesCS3D01G349800 chr6B 78.459 701 95 40 797 1471 702836514 702835844 2.090000e-109 407.0
25 TraesCS3D01G349800 chr6B 87.347 245 19 11 4597 4831 702832284 702832042 2.860000e-68 270.0
26 TraesCS3D01G349800 chr6B 93.220 118 8 0 4476 4593 237102717 237102834 2.300000e-39 174.0
27 TraesCS3D01G349800 chr6B 79.197 274 40 11 1378 1640 702835758 702835491 2.300000e-39 174.0
28 TraesCS3D01G349800 chr6B 78.616 159 28 6 108 264 470820776 470820622 3.970000e-17 100.0
29 TraesCS3D01G349800 chr6A 89.316 1432 105 25 3038 4435 607959941 607958524 0.000000e+00 1753.0
30 TraesCS3D01G349800 chr6A 85.395 1075 97 32 1992 3036 607961074 607960030 0.000000e+00 1061.0
31 TraesCS3D01G349800 chr6A 77.433 935 128 50 4592 5501 607958457 607957581 1.210000e-131 481.0
32 TraesCS3D01G349800 chr6A 77.309 758 154 11 3692 4434 13065214 13065968 1.240000e-116 431.0
33 TraesCS3D01G349800 chr6A 76.687 815 89 47 683 1435 607962934 607962159 5.930000e-95 359.0
34 TraesCS3D01G349800 chr6A 80.308 325 53 6 1378 1696 607961886 607961567 1.040000e-57 235.0
35 TraesCS3D01G349800 chr6A 87.931 116 7 5 1031 1141 13063122 13063235 5.060000e-26 130.0
36 TraesCS3D01G349800 chr6A 81.579 152 20 5 797 945 607966173 607966027 1.090000e-22 119.0
37 TraesCS3D01G349800 chr7D 94.068 118 4 2 4483 4600 426778562 426778676 6.410000e-40 176.0
38 TraesCS3D01G349800 chr5A 95.495 111 3 1 4484 4594 512233469 512233577 6.410000e-40 176.0
39 TraesCS3D01G349800 chr5A 90.226 133 10 2 4468 4600 366242674 366242803 2.980000e-38 171.0
40 TraesCS3D01G349800 chr5A 79.861 144 28 1 115 257 661022379 661022522 3.070000e-18 104.0
41 TraesCS3D01G349800 chr5B 94.017 117 4 2 4484 4600 115399226 115399113 2.300000e-39 174.0
42 TraesCS3D01G349800 chr5B 89.796 49 1 2 514 560 480770197 480770151 6.730000e-05 60.2
43 TraesCS3D01G349800 chr5B 89.796 49 1 2 514 560 480804608 480804562 6.730000e-05 60.2
44 TraesCS3D01G349800 chr2B 93.966 116 5 1 4484 4599 638968709 638968596 2.300000e-39 174.0
45 TraesCS3D01G349800 chr2B 93.805 113 5 1 4484 4596 741019051 741019161 1.070000e-37 169.0
46 TraesCS3D01G349800 chr2A 80.921 152 26 3 108 258 566474275 566474126 3.940000e-22 117.0
47 TraesCS3D01G349800 chrUn 95.238 63 1 2 35 96 473030168 473030107 1.430000e-16 99.0
48 TraesCS3D01G349800 chrUn 89.796 49 1 2 514 560 349854704 349854658 6.730000e-05 60.2
49 TraesCS3D01G349800 chr1D 100.000 53 0 0 35 87 6166454 6166402 1.430000e-16 99.0
50 TraesCS3D01G349800 chr1D 97.222 36 1 0 2998 3033 471283754 471283789 1.870000e-05 62.1
51 TraesCS3D01G349800 chr5D 95.161 62 2 1 35 96 264076653 264076593 5.130000e-16 97.1
52 TraesCS3D01G349800 chr7B 98.182 55 0 1 35 89 12959068 12959121 1.850000e-15 95.3
53 TraesCS3D01G349800 chr7B 96.154 52 1 1 35 86 100398474 100398524 3.990000e-12 84.2
54 TraesCS3D01G349800 chr1B 98.182 55 0 1 35 89 373294724 373294671 1.850000e-15 95.3
55 TraesCS3D01G349800 chr2D 94.915 59 2 1 35 93 277675430 277675373 2.390000e-14 91.6
56 TraesCS3D01G349800 chr1A 76.974 152 34 1 108 258 359976144 359975993 1.110000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G349800 chr3D 461203095 461209312 6217 True 11483.00 11483 100.000000 1 6218 1 chr3D.!!$R1 6217
1 TraesCS3D01G349800 chr3A 603793909 603800240 6331 True 1694.20 4143 90.814600 111 6218 5 chr3A.!!$R1 6107
2 TraesCS3D01G349800 chr3B 611692002 611696921 4919 True 1619.25 3976 91.118000 267 5233 4 chr3B.!!$R4 4966
3 TraesCS3D01G349800 chr3B 611680074 611680776 702 True 730.00 730 85.830000 5242 5958 1 chr3B.!!$R3 716
4 TraesCS3D01G349800 chr6D 461360913 461366080 5167 True 993.50 2874 84.148000 797 5501 4 chr6D.!!$R2 4704
5 TraesCS3D01G349800 chr6B 702831458 702836514 5056 True 818.60 2826 82.693400 797 5394 5 chr6B.!!$R3 4597
6 TraesCS3D01G349800 chr6B 21432432 21433761 1329 True 484.00 484 74.124000 3158 4434 1 chr6B.!!$R1 1276
7 TraesCS3D01G349800 chr6A 607957581 607966173 8592 True 668.00 1753 81.786333 683 5501 6 chr6A.!!$R1 4818
8 TraesCS3D01G349800 chr6A 13063122 13065968 2846 False 280.50 431 82.620000 1031 4434 2 chr6A.!!$F1 3403

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
326 329 0.469144 ACGGTGCCCCAGTTTTGAAT 60.469 50.000 0.00 0.0 0.00 2.57 F
1287 3972 0.250770 AAACCGAGGAGGACAAAGCC 60.251 55.000 0.00 0.0 45.00 4.35 F
1526 4586 0.462759 CTCGATCCAAACTCCCCTGC 60.463 60.000 0.00 0.0 0.00 4.85 F
1661 4738 0.741915 TGCCCAAAAACACCGTTCTC 59.258 50.000 0.00 0.0 0.00 2.87 F
1669 4746 1.129058 AACACCGTTCTCTTCCCAGT 58.871 50.000 0.00 0.0 0.00 4.00 F
1803 4948 1.327303 CTGTTGCCCCTTTGCTACAA 58.673 50.000 2.34 0.0 44.20 2.41 F
2011 5748 1.554160 CATCTTGGAGCTGACCTGAGT 59.446 52.381 0.00 0.0 0.00 3.41 F
2261 6007 2.029666 GGATGCATCGAGGTCGGG 59.970 66.667 20.15 0.0 40.29 5.14 F
3336 7250 3.220674 AGTCAAAGGCAAAGAAGCTCT 57.779 42.857 0.00 0.0 34.17 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 4656 0.106419 AACGACCCTGGCCAAAAAGA 60.106 50.000 7.01 0.00 0.00 2.52 R
2124 5867 1.388547 AAGTTGTGCACATGAACGGT 58.611 45.000 22.39 6.95 0.00 4.83 R
3153 7055 2.673258 ACCCTGGGTAAAACAAACAGG 58.327 47.619 18.99 0.00 46.36 4.00 R
3336 7250 4.006989 CCATTGGTATGAGAAACCGTTGA 58.993 43.478 0.00 0.00 40.08 3.18 R
3563 7498 4.817464 TGACTAGTACGCACCACAAAATTT 59.183 37.500 0.00 0.00 0.00 1.82 R
4248 8247 8.840200 ATTGGAGATTAACTGACTCTACCTTA 57.160 34.615 0.00 0.00 0.00 2.69 R
4469 8492 7.918076 ACAGAGGGAGTAACAGAAATATGAAA 58.082 34.615 0.00 0.00 0.00 2.69 R
4571 8594 0.969894 CTCCCTCCGTTCACTTCTGT 59.030 55.000 0.00 0.00 0.00 3.41 R
5736 10194 0.970937 ACTGTCGCTAGGCTGGCTTA 60.971 55.000 20.92 5.98 0.00 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 9.813446 AAATCTCTCTTAATCAATGAAAATGGC 57.187 29.630 0.00 0.00 0.00 4.40
58 59 7.943079 TCTCTCTTAATCAATGAAAATGGCA 57.057 32.000 0.00 0.00 0.00 4.92
59 60 8.352137 TCTCTCTTAATCAATGAAAATGGCAA 57.648 30.769 0.00 0.00 0.00 4.52
62 63 8.246180 TCTCTTAATCAATGAAAATGGCAAGTC 58.754 33.333 0.00 0.00 0.00 3.01
63 64 8.125978 TCTTAATCAATGAAAATGGCAAGTCT 57.874 30.769 0.00 0.00 0.00 3.24
66 67 9.558396 TTAATCAATGAAAATGGCAAGTCTTTT 57.442 25.926 0.00 0.00 0.00 2.27
67 68 6.847956 TCAATGAAAATGGCAAGTCTTTTG 57.152 33.333 1.54 4.22 0.00 2.44
75 76 2.492019 GCAAGTCTTTTGCCTCGTTT 57.508 45.000 0.54 0.00 39.38 3.60
77 78 2.223479 GCAAGTCTTTTGCCTCGTTTCA 60.223 45.455 0.54 0.00 39.38 2.69
78 79 3.733684 GCAAGTCTTTTGCCTCGTTTCAA 60.734 43.478 0.54 0.00 39.38 2.69
79 80 4.420168 CAAGTCTTTTGCCTCGTTTCAAA 58.580 39.130 0.00 0.00 0.00 2.69
80 81 4.712122 AGTCTTTTGCCTCGTTTCAAAA 57.288 36.364 9.63 9.63 39.13 2.44
81 82 5.066968 AGTCTTTTGCCTCGTTTCAAAAA 57.933 34.783 10.66 0.00 40.36 1.94
117 118 9.477484 TGTTAAATATAAAAACCATGCACGTTT 57.523 25.926 7.71 7.71 34.95 3.60
123 124 9.724839 ATATAAAAACCATGCACGTTTGTATAC 57.275 29.630 22.05 0.00 38.10 1.47
130 131 3.322369 TGCACGTTTGTATACTGAGGTG 58.678 45.455 18.87 18.87 0.00 4.00
141 142 0.919710 ACTGAGGTGGGCTATTTCCC 59.080 55.000 0.00 0.00 46.73 3.97
151 152 2.901839 GGGCTATTTCCCATGCATGATT 59.098 45.455 28.31 9.70 45.82 2.57
173 174 4.445452 ACATGTTGAGGTGATGCATTTC 57.555 40.909 0.00 0.00 0.00 2.17
180 181 1.117150 GGTGATGCATTTCCCATGCT 58.883 50.000 0.00 0.00 44.79 3.79
217 218 6.344500 AGAGGACATACTTGCATGTTAAGAG 58.656 40.000 10.85 0.00 39.25 2.85
234 235 8.827177 TGTTAAGAGAAATATATTAGTGGCGG 57.173 34.615 0.00 0.00 0.00 6.13
240 241 8.426489 AGAGAAATATATTAGTGGCGGTTGTTA 58.574 33.333 0.00 0.00 0.00 2.41
252 253 7.159372 AGTGGCGGTTGTTATTTAGATATAGG 58.841 38.462 0.00 0.00 0.00 2.57
326 329 0.469144 ACGGTGCCCCAGTTTTGAAT 60.469 50.000 0.00 0.00 0.00 2.57
364 367 5.530543 GCCTTTTGAATTTCAACCAAATCCA 59.469 36.000 11.30 0.00 35.89 3.41
475 480 8.031848 TCCTGAAAATGATTTTGCTTTATTGC 57.968 30.769 8.03 0.00 31.94 3.56
568 678 4.023193 CACACACTTGTAGAAAACATCCCC 60.023 45.833 0.00 0.00 38.10 4.81
727 3283 4.007659 GACAATAAAAGCGGGAGGAGAAA 58.992 43.478 0.00 0.00 0.00 2.52
728 3284 4.010349 ACAATAAAAGCGGGAGGAGAAAG 58.990 43.478 0.00 0.00 0.00 2.62
732 3291 1.268283 AAGCGGGAGGAGAAAGGAGG 61.268 60.000 0.00 0.00 0.00 4.30
744 3306 1.427753 GAAAGGAGGAAACCAGGGGAA 59.572 52.381 0.00 0.00 0.00 3.97
1230 3884 4.883354 CCAGCCTCCGATTGGGGC 62.883 72.222 19.07 19.07 46.34 5.80
1273 3958 4.508052 GCGTTATACCACGATTAAAACCG 58.492 43.478 1.17 0.00 43.15 4.44
1274 3959 4.267452 GCGTTATACCACGATTAAAACCGA 59.733 41.667 1.17 0.00 43.15 4.69
1277 3962 4.741321 ATACCACGATTAAAACCGAGGA 57.259 40.909 14.81 3.98 38.50 3.71
1278 3963 2.968675 ACCACGATTAAAACCGAGGAG 58.031 47.619 14.81 0.83 38.50 3.69
1280 3965 2.093869 CCACGATTAAAACCGAGGAGGA 60.094 50.000 0.00 0.00 45.00 3.71
1284 3969 3.998341 CGATTAAAACCGAGGAGGACAAA 59.002 43.478 0.00 0.00 45.00 2.83
1285 3970 4.092968 CGATTAAAACCGAGGAGGACAAAG 59.907 45.833 0.00 0.00 45.00 2.77
1286 3971 1.605753 AAAACCGAGGAGGACAAAGC 58.394 50.000 0.00 0.00 45.00 3.51
1287 3972 0.250770 AAACCGAGGAGGACAAAGCC 60.251 55.000 0.00 0.00 45.00 4.35
1288 3973 2.125512 CCGAGGAGGACAAAGCCG 60.126 66.667 0.00 0.00 45.00 5.52
1308 3993 1.129437 GTGCCTGCTTCTGATTCGTTC 59.871 52.381 0.00 0.00 0.00 3.95
1313 3998 4.109050 CCTGCTTCTGATTCGTTCTAGAC 58.891 47.826 0.00 0.00 0.00 2.59
1324 4009 1.865970 CGTTCTAGACGCCGTAGATCT 59.134 52.381 0.00 0.00 45.86 2.75
1368 4066 4.022849 AGCATAGTGTTCTTGGTGCTTTTC 60.023 41.667 0.00 0.00 39.68 2.29
1369 4067 4.022849 GCATAGTGTTCTTGGTGCTTTTCT 60.023 41.667 0.00 0.00 0.00 2.52
1373 4071 4.706962 AGTGTTCTTGGTGCTTTTCTTTCT 59.293 37.500 0.00 0.00 0.00 2.52
1394 4443 9.520204 CTTTCTTTCTTGAATTGCTTGTTCTTA 57.480 29.630 0.00 0.00 0.00 2.10
1400 4449 5.618056 TGAATTGCTTGTTCTTAGCTCAG 57.382 39.130 0.00 0.00 39.38 3.35
1451 4500 1.729284 TTGGCGGTAGGACGATTTTC 58.271 50.000 0.00 0.00 35.47 2.29
1472 4521 3.587061 TCACATGGGAAGGTGACAACTAT 59.413 43.478 0.00 0.00 39.00 2.12
1476 4531 5.962031 ACATGGGAAGGTGACAACTATACTA 59.038 40.000 0.00 0.00 0.00 1.82
1498 4553 8.687292 ACTATACTAATTGATGAGTACACCGA 57.313 34.615 0.00 0.00 31.15 4.69
1526 4586 0.462759 CTCGATCCAAACTCCCCTGC 60.463 60.000 0.00 0.00 0.00 4.85
1545 4605 1.883638 GCATCAGTTCACTGCCCTTGA 60.884 52.381 1.74 0.00 43.46 3.02
1548 4608 2.783135 TCAGTTCACTGCCCTTGAATC 58.217 47.619 1.74 0.00 43.46 2.52
1559 4624 4.410099 TGCCCTTGAATCAGACAGAAAAT 58.590 39.130 0.00 0.00 0.00 1.82
1575 4651 9.612066 AGACAGAAAATCTCTCATATCCTTTTC 57.388 33.333 0.00 0.00 34.44 2.29
1576 4652 9.388506 GACAGAAAATCTCTCATATCCTTTTCA 57.611 33.333 0.00 0.00 35.88 2.69
1577 4653 9.917887 ACAGAAAATCTCTCATATCCTTTTCAT 57.082 29.630 0.00 0.00 35.88 2.57
1579 4655 9.352191 AGAAAATCTCTCATATCCTTTTCATGG 57.648 33.333 0.00 0.00 35.88 3.66
1580 4656 9.129532 GAAAATCTCTCATATCCTTTTCATGGT 57.870 33.333 0.00 0.00 34.41 3.55
1581 4657 8.688747 AAATCTCTCATATCCTTTTCATGGTC 57.311 34.615 0.00 0.00 0.00 4.02
1582 4658 7.630005 ATCTCTCATATCCTTTTCATGGTCT 57.370 36.000 0.00 0.00 0.00 3.85
1583 4659 7.443302 TCTCTCATATCCTTTTCATGGTCTT 57.557 36.000 0.00 0.00 0.00 3.01
1584 4660 7.865820 TCTCTCATATCCTTTTCATGGTCTTT 58.134 34.615 0.00 0.00 0.00 2.52
1585 4661 8.331740 TCTCTCATATCCTTTTCATGGTCTTTT 58.668 33.333 0.00 0.00 0.00 2.27
1586 4662 8.884124 TCTCATATCCTTTTCATGGTCTTTTT 57.116 30.769 0.00 0.00 0.00 1.94
1640 4716 4.124238 GGATCCGATTCACCGTATTTTGA 58.876 43.478 0.00 0.00 0.00 2.69
1660 4737 1.408969 ATGCCCAAAAACACCGTTCT 58.591 45.000 0.00 0.00 0.00 3.01
1661 4738 0.741915 TGCCCAAAAACACCGTTCTC 59.258 50.000 0.00 0.00 0.00 2.87
1666 4743 2.034179 CCAAAAACACCGTTCTCTTCCC 59.966 50.000 0.00 0.00 0.00 3.97
1669 4746 1.129058 AACACCGTTCTCTTCCCAGT 58.871 50.000 0.00 0.00 0.00 4.00
1688 4765 5.215160 CCAGTTATTGTTCTTGTTGCAGAC 58.785 41.667 0.00 0.00 0.00 3.51
1689 4766 5.009010 CCAGTTATTGTTCTTGTTGCAGACT 59.991 40.000 0.00 0.00 0.00 3.24
1690 4767 6.460123 CCAGTTATTGTTCTTGTTGCAGACTT 60.460 38.462 0.00 0.00 0.00 3.01
1691 4768 7.255104 CCAGTTATTGTTCTTGTTGCAGACTTA 60.255 37.037 0.00 0.00 0.00 2.24
1692 4769 8.292448 CAGTTATTGTTCTTGTTGCAGACTTAT 58.708 33.333 0.00 0.00 0.00 1.73
1693 4770 8.850156 AGTTATTGTTCTTGTTGCAGACTTATT 58.150 29.630 0.00 0.00 0.00 1.40
1694 4771 9.463443 GTTATTGTTCTTGTTGCAGACTTATTT 57.537 29.630 0.00 0.00 0.00 1.40
1696 4773 8.947055 ATTGTTCTTGTTGCAGACTTATTTTT 57.053 26.923 0.00 0.00 0.00 1.94
1697 4774 7.754069 TGTTCTTGTTGCAGACTTATTTTTG 57.246 32.000 0.00 0.00 0.00 2.44
1698 4775 7.319646 TGTTCTTGTTGCAGACTTATTTTTGT 58.680 30.769 0.00 0.00 0.00 2.83
1699 4776 8.462811 TGTTCTTGTTGCAGACTTATTTTTGTA 58.537 29.630 0.00 0.00 0.00 2.41
1700 4777 9.296400 GTTCTTGTTGCAGACTTATTTTTGTAA 57.704 29.630 0.00 0.00 0.00 2.41
1701 4778 9.515020 TTCTTGTTGCAGACTTATTTTTGTAAG 57.485 29.630 0.00 0.00 37.62 2.34
1702 4779 8.682710 TCTTGTTGCAGACTTATTTTTGTAAGT 58.317 29.630 0.00 0.00 45.11 2.24
1703 4780 9.944663 CTTGTTGCAGACTTATTTTTGTAAGTA 57.055 29.630 0.00 0.00 43.13 2.24
1708 4785 9.426837 TGCAGACTTATTTTTGTAAGTATACGT 57.573 29.630 0.00 0.00 43.13 3.57
1709 4786 9.897349 GCAGACTTATTTTTGTAAGTATACGTC 57.103 33.333 0.00 0.00 43.13 4.34
1713 4790 9.374838 ACTTATTTTTGTAAGTATACGTCCTGG 57.625 33.333 0.00 0.00 41.74 4.45
1714 4791 8.721019 TTATTTTTGTAAGTATACGTCCTGGG 57.279 34.615 0.00 0.00 34.60 4.45
1715 4792 5.999205 TTTTGTAAGTATACGTCCTGGGA 57.001 39.130 0.00 0.00 34.60 4.37
1716 4793 5.587388 TTTGTAAGTATACGTCCTGGGAG 57.413 43.478 0.00 0.00 34.60 4.30
1717 4794 4.508551 TGTAAGTATACGTCCTGGGAGA 57.491 45.455 0.00 0.00 34.60 3.71
1718 4795 4.202441 TGTAAGTATACGTCCTGGGAGAC 58.798 47.826 0.00 0.00 34.60 3.36
1726 4803 2.873133 GTCCTGGGAGACGTATCAAG 57.127 55.000 12.92 8.67 0.00 3.02
1727 4804 2.376109 GTCCTGGGAGACGTATCAAGA 58.624 52.381 12.92 0.00 0.00 3.02
1728 4805 2.959707 GTCCTGGGAGACGTATCAAGAT 59.040 50.000 12.92 0.00 0.00 2.40
1729 4806 3.004944 GTCCTGGGAGACGTATCAAGATC 59.995 52.174 12.92 2.56 0.00 2.75
1735 4813 4.099573 GGGAGACGTATCAAGATCCTGAAA 59.900 45.833 12.92 0.00 0.00 2.69
1746 4875 6.449698 TCAAGATCCTGAAATTGTCTTTTGC 58.550 36.000 0.00 0.00 0.00 3.68
1803 4948 1.327303 CTGTTGCCCCTTTGCTACAA 58.673 50.000 2.34 0.00 44.20 2.41
1804 4949 1.895131 CTGTTGCCCCTTTGCTACAAT 59.105 47.619 2.34 0.00 44.20 2.71
1807 4952 3.898123 TGTTGCCCCTTTGCTACAATTAA 59.102 39.130 0.00 0.00 42.48 1.40
1836 4981 3.370978 TCGCTATTCCTTTCTTCGCTTTG 59.629 43.478 0.00 0.00 0.00 2.77
1838 4983 4.406943 GCTATTCCTTTCTTCGCTTTGTG 58.593 43.478 0.00 0.00 0.00 3.33
1854 4999 4.505808 CTTTGTGATGCTCTGATGAGAGT 58.494 43.478 11.05 0.00 46.76 3.24
1863 5008 5.473491 GCTCTGATGAGAGTGACAGCACA 62.473 52.174 11.05 0.00 46.76 4.57
1913 5113 2.004733 GCCTTGCATGATCTTTTTGCC 58.995 47.619 0.00 0.00 35.51 4.52
2001 5738 2.548920 CGGGTTATCCTCATCTTGGAGC 60.549 54.545 0.00 0.00 36.99 4.70
2011 5748 1.554160 CATCTTGGAGCTGACCTGAGT 59.446 52.381 0.00 0.00 0.00 3.41
2073 5815 5.132502 TCTGATTTGGTCATGACAGTTTGT 58.867 37.500 26.47 7.68 35.97 2.83
2089 5832 4.809426 CAGTTTGTCGTGTCTTAGTTCCTT 59.191 41.667 0.00 0.00 0.00 3.36
2092 5835 3.713288 TGTCGTGTCTTAGTTCCTTGTG 58.287 45.455 0.00 0.00 0.00 3.33
2111 5854 2.614057 GTGGTCCATTTCGATAAGCTGG 59.386 50.000 0.00 0.00 0.00 4.85
2114 5857 3.561725 GGTCCATTTCGATAAGCTGGAAG 59.438 47.826 0.00 0.00 37.72 3.46
2117 5860 5.354234 GTCCATTTCGATAAGCTGGAAGAAA 59.646 40.000 9.19 9.19 37.72 2.52
2124 5867 9.607988 TTTCGATAAGCTGGAAGAAATAATACA 57.392 29.630 0.00 0.00 34.07 2.29
2173 5919 5.106078 TGGTGTGTGGAGTTTAACAAAGTTC 60.106 40.000 0.00 0.00 0.00 3.01
2174 5920 5.106078 GGTGTGTGGAGTTTAACAAAGTTCA 60.106 40.000 0.00 0.00 0.00 3.18
2261 6007 2.029666 GGATGCATCGAGGTCGGG 59.970 66.667 20.15 0.00 40.29 5.14
2292 6038 7.094592 GCTGTTAAAGAAGAAAATGCTCCTAGT 60.095 37.037 0.00 0.00 0.00 2.57
2598 6357 8.752187 CCTAGTAGTAGTCGTCTATTATCTCCT 58.248 40.741 3.91 0.00 0.00 3.69
2649 6408 5.457473 GTGTGCTTAACGTGCTTTGTTAAAT 59.543 36.000 0.00 0.00 40.25 1.40
2720 6480 5.060506 ACATGCATTATGCCCAATGAAATG 58.939 37.500 18.59 13.25 44.23 2.32
3115 7016 8.975663 AGAAGATTGCATTATGAATCAGAGAA 57.024 30.769 14.75 0.00 31.98 2.87
3153 7055 5.163754 ACTCTTGCTGAATGTTTAATACGGC 60.164 40.000 0.00 0.00 0.00 5.68
3336 7250 3.220674 AGTCAAAGGCAAAGAAGCTCT 57.779 42.857 0.00 0.00 34.17 4.09
3563 7498 4.908601 TGAAGGAGTTCATTTGAGCCTA 57.091 40.909 0.00 0.00 37.79 3.93
4248 8247 4.488770 AGGTTAACCCATCACAAATTGGT 58.511 39.130 21.30 0.00 36.42 3.67
4441 8443 3.428452 CGCATCCAAAGAGGTACTACGAA 60.428 47.826 0.00 0.00 41.55 3.85
4493 8516 8.792830 TTTTCATATTTCTGTTACTCCCTCTG 57.207 34.615 0.00 0.00 0.00 3.35
4494 8517 7.496346 TTCATATTTCTGTTACTCCCTCTGT 57.504 36.000 0.00 0.00 0.00 3.41
4495 8518 7.496346 TCATATTTCTGTTACTCCCTCTGTT 57.504 36.000 0.00 0.00 0.00 3.16
4496 8519 7.556844 TCATATTTCTGTTACTCCCTCTGTTC 58.443 38.462 0.00 0.00 0.00 3.18
4497 8520 5.825593 ATTTCTGTTACTCCCTCTGTTCA 57.174 39.130 0.00 0.00 0.00 3.18
4498 8521 4.602340 TTCTGTTACTCCCTCTGTTCAC 57.398 45.455 0.00 0.00 0.00 3.18
4499 8522 3.845860 TCTGTTACTCCCTCTGTTCACT 58.154 45.455 0.00 0.00 0.00 3.41
4500 8523 4.223953 TCTGTTACTCCCTCTGTTCACTT 58.776 43.478 0.00 0.00 0.00 3.16
4501 8524 4.654262 TCTGTTACTCCCTCTGTTCACTTT 59.346 41.667 0.00 0.00 0.00 2.66
4502 8525 5.130477 TCTGTTACTCCCTCTGTTCACTTTT 59.870 40.000 0.00 0.00 0.00 2.27
4503 8526 5.123227 TGTTACTCCCTCTGTTCACTTTTG 58.877 41.667 0.00 0.00 0.00 2.44
4504 8527 3.933861 ACTCCCTCTGTTCACTTTTGT 57.066 42.857 0.00 0.00 0.00 2.83
4505 8528 6.126997 TGTTACTCCCTCTGTTCACTTTTGTA 60.127 38.462 0.00 0.00 0.00 2.41
4506 8529 5.367945 ACTCCCTCTGTTCACTTTTGTAA 57.632 39.130 0.00 0.00 0.00 2.41
4507 8530 5.368989 ACTCCCTCTGTTCACTTTTGTAAG 58.631 41.667 0.00 0.00 37.40 2.34
4508 8531 5.130477 ACTCCCTCTGTTCACTTTTGTAAGA 59.870 40.000 0.00 0.00 35.30 2.10
4509 8532 5.365619 TCCCTCTGTTCACTTTTGTAAGAC 58.634 41.667 0.00 0.00 35.30 3.01
4510 8533 4.211374 CCCTCTGTTCACTTTTGTAAGACG 59.789 45.833 0.00 0.00 35.30 4.18
4511 8534 4.809426 CCTCTGTTCACTTTTGTAAGACGT 59.191 41.667 0.00 0.00 35.30 4.34
4512 8535 5.293569 CCTCTGTTCACTTTTGTAAGACGTT 59.706 40.000 0.00 0.00 35.30 3.99
4513 8536 6.183360 CCTCTGTTCACTTTTGTAAGACGTTT 60.183 38.462 0.00 0.00 35.30 3.60
4514 8537 7.136289 TCTGTTCACTTTTGTAAGACGTTTT 57.864 32.000 0.00 0.00 35.30 2.43
4515 8538 8.254178 TCTGTTCACTTTTGTAAGACGTTTTA 57.746 30.769 0.00 0.00 35.30 1.52
4516 8539 8.385111 TCTGTTCACTTTTGTAAGACGTTTTAG 58.615 33.333 0.00 0.00 35.30 1.85
4517 8540 8.254178 TGTTCACTTTTGTAAGACGTTTTAGA 57.746 30.769 0.00 0.00 35.30 2.10
4518 8541 8.170553 TGTTCACTTTTGTAAGACGTTTTAGAC 58.829 33.333 0.00 0.00 35.30 2.59
4519 8542 7.830940 TCACTTTTGTAAGACGTTTTAGACA 57.169 32.000 0.00 0.00 35.30 3.41
4520 8543 7.902032 TCACTTTTGTAAGACGTTTTAGACAG 58.098 34.615 0.00 0.25 35.30 3.51
4521 8544 6.627671 CACTTTTGTAAGACGTTTTAGACAGC 59.372 38.462 0.00 0.00 35.30 4.40
4522 8545 6.537660 ACTTTTGTAAGACGTTTTAGACAGCT 59.462 34.615 0.00 0.00 35.30 4.24
4523 8546 5.900339 TTGTAAGACGTTTTAGACAGCTG 57.100 39.130 13.48 13.48 0.00 4.24
4524 8547 5.190992 TGTAAGACGTTTTAGACAGCTGA 57.809 39.130 23.35 0.00 0.00 4.26
4525 8548 5.593968 TGTAAGACGTTTTAGACAGCTGAA 58.406 37.500 23.35 0.48 0.00 3.02
4526 8549 6.044046 TGTAAGACGTTTTAGACAGCTGAAA 58.956 36.000 23.35 7.93 0.00 2.69
4527 8550 6.704493 TGTAAGACGTTTTAGACAGCTGAAAT 59.296 34.615 23.35 8.03 33.03 2.17
4528 8551 6.619801 AAGACGTTTTAGACAGCTGAAATT 57.380 33.333 23.35 0.00 33.03 1.82
4529 8552 5.990408 AGACGTTTTAGACAGCTGAAATTG 58.010 37.500 23.35 9.51 33.03 2.32
4530 8553 5.758296 AGACGTTTTAGACAGCTGAAATTGA 59.242 36.000 23.35 0.00 33.03 2.57
4531 8554 6.260050 AGACGTTTTAGACAGCTGAAATTGAA 59.740 34.615 23.35 4.96 33.03 2.69
4532 8555 6.199393 ACGTTTTAGACAGCTGAAATTGAAC 58.801 36.000 23.35 15.30 33.03 3.18
4533 8556 6.038271 ACGTTTTAGACAGCTGAAATTGAACT 59.962 34.615 23.35 8.36 33.03 3.01
4534 8557 6.358030 CGTTTTAGACAGCTGAAATTGAACTG 59.642 38.462 23.35 9.82 33.03 3.16
4535 8558 6.942532 TTTAGACAGCTGAAATTGAACTGT 57.057 33.333 23.35 0.00 43.93 3.55
4536 8559 6.942532 TTAGACAGCTGAAATTGAACTGTT 57.057 33.333 23.35 0.00 41.45 3.16
4537 8560 5.841957 AGACAGCTGAAATTGAACTGTTT 57.158 34.783 23.35 0.00 41.45 2.83
4538 8561 6.212888 AGACAGCTGAAATTGAACTGTTTT 57.787 33.333 23.35 0.00 41.45 2.43
4539 8562 6.038356 AGACAGCTGAAATTGAACTGTTTTG 58.962 36.000 23.35 0.00 41.45 2.44
4540 8563 5.111293 ACAGCTGAAATTGAACTGTTTTGG 58.889 37.500 23.35 0.00 38.38 3.28
4541 8564 4.508861 CAGCTGAAATTGAACTGTTTTGGG 59.491 41.667 8.42 0.00 0.00 4.12
4542 8565 4.162131 AGCTGAAATTGAACTGTTTTGGGT 59.838 37.500 0.00 0.00 0.00 4.51
4543 8566 4.270808 GCTGAAATTGAACTGTTTTGGGTG 59.729 41.667 0.00 0.00 0.00 4.61
4544 8567 5.413309 TGAAATTGAACTGTTTTGGGTGT 57.587 34.783 0.00 0.00 0.00 4.16
4545 8568 5.799213 TGAAATTGAACTGTTTTGGGTGTT 58.201 33.333 0.00 0.00 0.00 3.32
4546 8569 5.641209 TGAAATTGAACTGTTTTGGGTGTTG 59.359 36.000 0.00 0.00 0.00 3.33
4547 8570 4.817318 ATTGAACTGTTTTGGGTGTTGT 57.183 36.364 0.00 0.00 0.00 3.32
4548 8571 3.859411 TGAACTGTTTTGGGTGTTGTC 57.141 42.857 0.00 0.00 0.00 3.18
4549 8572 3.426615 TGAACTGTTTTGGGTGTTGTCT 58.573 40.909 0.00 0.00 0.00 3.41
4550 8573 3.829601 TGAACTGTTTTGGGTGTTGTCTT 59.170 39.130 0.00 0.00 0.00 3.01
4551 8574 5.010933 TGAACTGTTTTGGGTGTTGTCTTA 58.989 37.500 0.00 0.00 0.00 2.10
4552 8575 5.654650 TGAACTGTTTTGGGTGTTGTCTTAT 59.345 36.000 0.00 0.00 0.00 1.73
4553 8576 6.829298 TGAACTGTTTTGGGTGTTGTCTTATA 59.171 34.615 0.00 0.00 0.00 0.98
4554 8577 7.339721 TGAACTGTTTTGGGTGTTGTCTTATAA 59.660 33.333 0.00 0.00 0.00 0.98
4555 8578 7.648039 ACTGTTTTGGGTGTTGTCTTATAAA 57.352 32.000 0.00 0.00 0.00 1.40
4556 8579 8.245195 ACTGTTTTGGGTGTTGTCTTATAAAT 57.755 30.769 0.00 0.00 0.00 1.40
4557 8580 8.141268 ACTGTTTTGGGTGTTGTCTTATAAATG 58.859 33.333 0.00 0.00 0.00 2.32
4558 8581 8.012957 TGTTTTGGGTGTTGTCTTATAAATGT 57.987 30.769 0.00 0.00 0.00 2.71
4559 8582 8.138712 TGTTTTGGGTGTTGTCTTATAAATGTC 58.861 33.333 0.00 0.00 0.00 3.06
4560 8583 8.357402 GTTTTGGGTGTTGTCTTATAAATGTCT 58.643 33.333 0.00 0.00 0.00 3.41
4561 8584 9.575868 TTTTGGGTGTTGTCTTATAAATGTCTA 57.424 29.630 0.00 0.00 0.00 2.59
4562 8585 9.575868 TTTGGGTGTTGTCTTATAAATGTCTAA 57.424 29.630 0.00 0.00 0.00 2.10
4563 8586 9.575868 TTGGGTGTTGTCTTATAAATGTCTAAA 57.424 29.630 0.00 0.00 0.00 1.85
4564 8587 9.575868 TGGGTGTTGTCTTATAAATGTCTAAAA 57.424 29.630 0.00 0.00 0.00 1.52
4565 8588 9.836076 GGGTGTTGTCTTATAAATGTCTAAAAC 57.164 33.333 0.00 0.00 0.00 2.43
4566 8589 9.537848 GGTGTTGTCTTATAAATGTCTAAAACG 57.462 33.333 0.00 0.00 0.00 3.60
4578 8601 8.658499 AAATGTCTAAAACGTCTTACAGAAGT 57.342 30.769 0.00 0.00 38.56 3.01
4579 8602 7.639162 ATGTCTAAAACGTCTTACAGAAGTG 57.361 36.000 0.00 0.00 37.04 3.16
4580 8603 6.798482 TGTCTAAAACGTCTTACAGAAGTGA 58.202 36.000 0.00 0.00 37.04 3.41
4581 8604 7.259882 TGTCTAAAACGTCTTACAGAAGTGAA 58.740 34.615 0.00 0.00 37.04 3.18
4582 8605 7.221452 TGTCTAAAACGTCTTACAGAAGTGAAC 59.779 37.037 0.00 0.00 37.04 3.18
4583 8606 5.385396 AAAACGTCTTACAGAAGTGAACG 57.615 39.130 0.00 0.00 37.04 3.95
4584 8607 3.009301 ACGTCTTACAGAAGTGAACGG 57.991 47.619 0.00 0.00 35.66 4.44
4585 8608 2.620115 ACGTCTTACAGAAGTGAACGGA 59.380 45.455 0.00 0.00 35.66 4.69
4586 8609 3.235195 CGTCTTACAGAAGTGAACGGAG 58.765 50.000 0.00 0.00 34.03 4.63
4587 8610 3.576648 GTCTTACAGAAGTGAACGGAGG 58.423 50.000 0.00 0.00 34.03 4.30
4588 8611 2.561419 TCTTACAGAAGTGAACGGAGGG 59.439 50.000 0.00 0.00 34.03 4.30
4589 8612 2.297698 TACAGAAGTGAACGGAGGGA 57.702 50.000 0.00 0.00 0.00 4.20
4590 8613 0.969894 ACAGAAGTGAACGGAGGGAG 59.030 55.000 0.00 0.00 0.00 4.30
4631 8655 7.066043 TGTTTTACATTCCAGTCTAACAAACGT 59.934 33.333 0.00 0.00 0.00 3.99
4870 9054 1.293924 CCAGTTGATAGCTTGCCTCG 58.706 55.000 0.00 0.00 0.00 4.63
4910 9096 7.923344 GCACAAGTAATCTGAGCTTTCTAGATA 59.077 37.037 0.00 0.00 31.30 1.98
4986 9172 2.679059 CGAGCATTCCACCAAGTCTGAT 60.679 50.000 0.00 0.00 0.00 2.90
5169 9355 0.400815 ACCACCACAACCTGGACCTA 60.401 55.000 0.00 0.00 43.95 3.08
5254 9443 0.252239 ACCCATGGGAAGAAAAGCCC 60.252 55.000 38.07 0.00 44.93 5.19
5285 9474 2.161855 GAATCAGACACCATTGCCACA 58.838 47.619 0.00 0.00 0.00 4.17
5286 9475 2.291209 ATCAGACACCATTGCCACAA 57.709 45.000 0.00 0.00 0.00 3.33
5287 9476 2.291209 TCAGACACCATTGCCACAAT 57.709 45.000 0.00 0.00 0.00 2.71
5288 9477 1.887854 TCAGACACCATTGCCACAATG 59.112 47.619 12.32 12.32 0.00 2.82
5289 9478 0.604578 AGACACCATTGCCACAATGC 59.395 50.000 13.56 2.11 0.00 3.56
5290 9479 0.390209 GACACCATTGCCACAATGCC 60.390 55.000 13.56 1.22 0.00 4.40
5291 9480 1.120184 ACACCATTGCCACAATGCCA 61.120 50.000 13.56 0.00 0.00 4.92
5292 9481 0.671163 CACCATTGCCACAATGCCAC 60.671 55.000 13.56 0.00 0.00 5.01
5384 9809 7.870954 TCATATGAGTTTATGTCGGTGGTTATC 59.129 37.037 0.00 0.00 32.49 1.75
5432 9882 9.596308 TGTCCAAGCTTAACATATACTATAGGA 57.404 33.333 0.00 0.00 0.00 2.94
5447 9897 6.176014 ACTATAGGAATCTGGTACTTTGCC 57.824 41.667 4.43 0.00 0.00 4.52
5448 9898 2.403252 AGGAATCTGGTACTTTGCCG 57.597 50.000 0.00 0.00 0.00 5.69
5449 9899 1.906574 AGGAATCTGGTACTTTGCCGA 59.093 47.619 0.00 0.00 0.00 5.54
5517 9968 2.814336 AGAATCTCTTGGCACCGAAAAC 59.186 45.455 0.00 0.00 0.00 2.43
5577 10028 7.759489 AGGTCATGCTTTGAATAACAGTTAA 57.241 32.000 0.00 0.00 35.70 2.01
5616 10067 2.094100 TTTCACTCAAATTGGCCCCA 57.906 45.000 0.00 0.00 0.00 4.96
5625 10076 0.325577 AATTGGCCCCACTGGATTCC 60.326 55.000 0.00 0.00 35.39 3.01
5662 10113 9.345517 CATCTTATGGTTGTGATTTTGTAACTG 57.654 33.333 0.00 0.00 0.00 3.16
5809 10273 9.669353 GTAACTTATTATGAGGATGCAAATGTG 57.331 33.333 0.00 0.00 0.00 3.21
5829 10300 3.316308 GTGCTGTGATGAAACCAAGAACT 59.684 43.478 0.00 0.00 0.00 3.01
5934 10418 1.148310 AAATTGTCCGTCAGCTCACG 58.852 50.000 1.91 1.91 39.61 4.35
5983 10467 9.045223 TCCAATATATTGATGAAACTGAGAACG 57.955 33.333 24.17 4.40 40.14 3.95
5987 10471 9.784531 ATATATTGATGAAACTGAGAACGGAAT 57.215 29.630 0.00 0.00 0.00 3.01
5988 10472 6.824305 ATTGATGAAACTGAGAACGGAATT 57.176 33.333 0.00 0.00 0.00 2.17
6016 10500 8.970691 AAAATTACATCAGAAAATGAACTCCG 57.029 30.769 0.00 0.00 42.53 4.63
6017 10501 7.921786 AATTACATCAGAAAATGAACTCCGA 57.078 32.000 0.00 0.00 42.53 4.55
6058 10543 6.082338 CGCATCCTTATGAAGATTAATGTGC 58.918 40.000 0.00 0.00 34.84 4.57
6093 10578 9.151471 CAAGATAACTCGAAAGACCAAATTAGA 57.849 33.333 0.00 0.00 35.39 2.10
6095 10580 9.720769 AGATAACTCGAAAGACCAAATTAGAAA 57.279 29.630 0.00 0.00 35.39 2.52
6157 10649 8.017587 TCACAAGAAAAGAAGAAAAACAAAGC 57.982 30.769 0.00 0.00 0.00 3.51
6160 10652 7.810759 ACAAGAAAAGAAGAAAAACAAAGCGTA 59.189 29.630 0.00 0.00 0.00 4.42
6166 10658 6.560711 AGAAGAAAAACAAAGCGTAACACAT 58.439 32.000 0.00 0.00 0.00 3.21
6187 10679 3.654414 TGGCAAAACACAAGAAAAACGT 58.346 36.364 0.00 0.00 0.00 3.99
6197 10689 5.032220 CACAAGAAAAACGTTGGTACTTCC 58.968 41.667 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.974238 TGCCATTTTCATTGATTAAGAGAGATT 58.026 29.630 0.00 0.00 0.00 2.40
33 34 8.529424 TGCCATTTTCATTGATTAAGAGAGAT 57.471 30.769 0.00 0.00 0.00 2.75
34 35 7.943079 TGCCATTTTCATTGATTAAGAGAGA 57.057 32.000 0.00 0.00 0.00 3.10
35 36 8.248945 ACTTGCCATTTTCATTGATTAAGAGAG 58.751 33.333 0.00 0.00 0.00 3.20
36 37 8.125978 ACTTGCCATTTTCATTGATTAAGAGA 57.874 30.769 0.00 0.00 0.00 3.10
37 38 8.248945 AGACTTGCCATTTTCATTGATTAAGAG 58.751 33.333 0.00 0.00 0.00 2.85
38 39 8.125978 AGACTTGCCATTTTCATTGATTAAGA 57.874 30.769 0.00 0.00 0.00 2.10
39 40 8.767478 AAGACTTGCCATTTTCATTGATTAAG 57.233 30.769 0.00 0.00 0.00 1.85
40 41 9.558396 AAAAGACTTGCCATTTTCATTGATTAA 57.442 25.926 0.00 0.00 0.00 1.40
41 42 8.991026 CAAAAGACTTGCCATTTTCATTGATTA 58.009 29.630 0.00 0.00 0.00 1.75
42 43 7.520937 GCAAAAGACTTGCCATTTTCATTGATT 60.521 33.333 0.00 0.00 39.38 2.57
43 44 6.072893 GCAAAAGACTTGCCATTTTCATTGAT 60.073 34.615 0.00 0.00 39.38 2.57
44 45 5.236911 GCAAAAGACTTGCCATTTTCATTGA 59.763 36.000 0.00 0.00 39.38 2.57
56 57 2.223479 TGAAACGAGGCAAAAGACTTGC 60.223 45.455 0.78 0.78 44.22 4.01
57 58 3.691049 TGAAACGAGGCAAAAGACTTG 57.309 42.857 0.00 0.00 0.00 3.16
58 59 4.712122 TTTGAAACGAGGCAAAAGACTT 57.288 36.364 0.00 0.00 31.64 3.01
59 60 4.712122 TTTTGAAACGAGGCAAAAGACT 57.288 36.364 0.00 0.00 38.60 3.24
88 89 9.081997 CGTGCATGGTTTTTATATTTAACATGT 57.918 29.630 0.00 0.00 0.00 3.21
90 91 9.646427 AACGTGCATGGTTTTTATATTTAACAT 57.354 25.926 11.36 0.00 0.00 2.71
91 92 9.477484 AAACGTGCATGGTTTTTATATTTAACA 57.523 25.926 11.36 0.00 34.08 2.41
92 93 9.734269 CAAACGTGCATGGTTTTTATATTTAAC 57.266 29.630 6.43 0.00 35.53 2.01
93 94 9.477484 ACAAACGTGCATGGTTTTTATATTTAA 57.523 25.926 6.43 0.00 35.53 1.52
95 96 7.954788 ACAAACGTGCATGGTTTTTATATTT 57.045 28.000 6.43 0.00 35.53 1.40
97 98 9.724839 GTATACAAACGTGCATGGTTTTTATAT 57.275 29.630 21.85 17.50 36.09 0.86
98 99 8.948145 AGTATACAAACGTGCATGGTTTTTATA 58.052 29.630 6.43 14.78 35.53 0.98
100 101 7.041303 TCAGTATACAAACGTGCATGGTTTTTA 60.041 33.333 6.43 10.03 35.53 1.52
101 102 5.918011 CAGTATACAAACGTGCATGGTTTTT 59.082 36.000 6.43 8.16 35.53 1.94
102 103 5.239744 TCAGTATACAAACGTGCATGGTTTT 59.760 36.000 6.43 3.10 35.53 2.43
103 104 4.757657 TCAGTATACAAACGTGCATGGTTT 59.242 37.500 6.43 9.64 38.07 3.27
104 105 4.320023 TCAGTATACAAACGTGCATGGTT 58.680 39.130 11.36 7.22 0.00 3.67
107 108 3.932710 ACCTCAGTATACAAACGTGCATG 59.067 43.478 3.82 3.82 0.00 4.06
108 109 3.932710 CACCTCAGTATACAAACGTGCAT 59.067 43.478 5.50 0.00 0.00 3.96
109 110 3.322369 CACCTCAGTATACAAACGTGCA 58.678 45.455 5.50 0.00 0.00 4.57
117 118 4.347000 GGAAATAGCCCACCTCAGTATACA 59.653 45.833 5.50 0.00 0.00 2.29
130 131 7.758873 ATGTAATCATGCATGGGAAATAGCCC 61.759 42.308 25.97 0.00 39.57 5.19
151 152 4.398988 GGAAATGCATCACCTCAACATGTA 59.601 41.667 0.00 0.00 0.00 2.29
159 160 1.068127 GCATGGGAAATGCATCACCTC 59.932 52.381 17.59 10.78 44.00 3.85
180 181 3.421919 TGTCCTCTCATCATGCAACAA 57.578 42.857 0.00 0.00 0.00 2.83
196 197 6.985188 TTCTCTTAACATGCAAGTATGTCC 57.015 37.500 4.29 0.00 40.24 4.02
332 335 7.012232 TGGTTGAAATTCAAAAGGCTCATTTTC 59.988 33.333 10.27 0.00 38.22 2.29
467 471 4.864916 ACATGTGAGCTACGCAATAAAG 57.135 40.909 0.00 0.00 42.43 1.85
509 514 9.988350 GATGAAATACGTTAACATTTGAGATGT 57.012 29.630 6.39 0.00 0.00 3.06
510 515 9.986833 TGATGAAATACGTTAACATTTGAGATG 57.013 29.630 6.39 0.00 0.00 2.90
626 740 2.459644 CCATGGAGCCTGGATTTTGAA 58.540 47.619 5.56 0.00 35.70 2.69
727 3283 0.846870 CCTTCCCCTGGTTTCCTCCT 60.847 60.000 0.00 0.00 0.00 3.69
728 3284 0.845102 TCCTTCCCCTGGTTTCCTCC 60.845 60.000 0.00 0.00 0.00 4.30
732 3291 0.845102 TCCCTCCTTCCCCTGGTTTC 60.845 60.000 0.00 0.00 0.00 2.78
1230 3884 2.202797 CATGTCGCACGAGAGGGG 60.203 66.667 0.00 0.00 32.68 4.79
1233 3887 3.685592 GAGCATGTCGCACGAGAG 58.314 61.111 0.00 0.00 46.13 3.20
1273 3958 2.035442 GCACGGCTTTGTCCTCCTC 61.035 63.158 0.00 0.00 0.00 3.71
1274 3959 2.032681 GCACGGCTTTGTCCTCCT 59.967 61.111 0.00 0.00 0.00 3.69
1277 3962 2.281761 CAGGCACGGCTTTGTCCT 60.282 61.111 0.00 0.00 0.00 3.85
1286 3971 1.699656 CGAATCAGAAGCAGGCACGG 61.700 60.000 0.00 0.00 0.00 4.94
1287 3972 1.016130 ACGAATCAGAAGCAGGCACG 61.016 55.000 0.00 0.00 0.00 5.34
1288 3973 1.129437 GAACGAATCAGAAGCAGGCAC 59.871 52.381 0.00 0.00 0.00 5.01
1308 3993 3.965292 TGAAAGATCTACGGCGTCTAG 57.035 47.619 19.21 10.14 0.00 2.43
1313 3998 2.128035 GTCCATGAAAGATCTACGGCG 58.872 52.381 4.80 4.80 0.00 6.46
1368 4066 7.998753 AGAACAAGCAATTCAAGAAAGAAAG 57.001 32.000 0.00 0.00 0.00 2.62
1369 4067 9.520204 CTAAGAACAAGCAATTCAAGAAAGAAA 57.480 29.630 0.00 0.00 0.00 2.52
1373 4071 7.042797 AGCTAAGAACAAGCAATTCAAGAAA 57.957 32.000 0.00 0.00 42.62 2.52
1394 4443 3.963374 TGCCTAACTACATCATCTGAGCT 59.037 43.478 0.00 0.00 0.00 4.09
1400 4449 4.013267 AGGCATGCCTAACTACATCATC 57.987 45.455 37.99 4.98 46.14 2.92
1451 4500 2.276732 AGTTGTCACCTTCCCATGTG 57.723 50.000 0.00 0.00 0.00 3.21
1472 4521 9.783081 TCGGTGTACTCATCAATTAGTATAGTA 57.217 33.333 0.00 0.00 31.25 1.82
1476 4531 7.584122 ACTCGGTGTACTCATCAATTAGTAT 57.416 36.000 0.00 0.00 31.25 2.12
1526 4586 2.189594 TCAAGGGCAGTGAACTGATG 57.810 50.000 14.58 7.04 46.59 3.07
1545 4605 8.936787 AGGATATGAGAGATTTTCTGTCTGATT 58.063 33.333 3.71 0.00 37.64 2.57
1548 4608 8.961294 AAAGGATATGAGAGATTTTCTGTCTG 57.039 34.615 3.71 0.00 37.64 3.51
1559 4624 7.443302 AAGACCATGAAAAGGATATGAGAGA 57.557 36.000 0.00 0.00 0.00 3.10
1575 4651 0.609662 CCCTGGCCAAAAAGACCATG 59.390 55.000 7.01 0.00 31.79 3.66
1576 4652 0.190815 ACCCTGGCCAAAAAGACCAT 59.809 50.000 7.01 0.00 31.79 3.55
1577 4653 0.469144 GACCCTGGCCAAAAAGACCA 60.469 55.000 7.01 0.00 0.00 4.02
1578 4654 1.524008 CGACCCTGGCCAAAAAGACC 61.524 60.000 7.01 0.00 0.00 3.85
1579 4655 0.822121 ACGACCCTGGCCAAAAAGAC 60.822 55.000 7.01 0.00 0.00 3.01
1580 4656 0.106419 AACGACCCTGGCCAAAAAGA 60.106 50.000 7.01 0.00 0.00 2.52
1581 4657 0.313987 GAACGACCCTGGCCAAAAAG 59.686 55.000 7.01 0.00 0.00 2.27
1582 4658 0.106419 AGAACGACCCTGGCCAAAAA 60.106 50.000 7.01 0.00 0.00 1.94
1583 4659 0.106419 AAGAACGACCCTGGCCAAAA 60.106 50.000 7.01 0.00 0.00 2.44
1584 4660 0.106419 AAAGAACGACCCTGGCCAAA 60.106 50.000 7.01 0.00 0.00 3.28
1585 4661 0.821711 CAAAGAACGACCCTGGCCAA 60.822 55.000 7.01 0.00 0.00 4.52
1586 4662 1.228124 CAAAGAACGACCCTGGCCA 60.228 57.895 4.71 4.71 0.00 5.36
1623 4699 4.035017 GGCATTCAAAATACGGTGAATCG 58.965 43.478 0.00 0.00 41.44 3.34
1630 4706 4.752101 TGTTTTTGGGCATTCAAAATACGG 59.248 37.500 10.96 0.00 43.42 4.02
1640 4716 1.760029 AGAACGGTGTTTTTGGGCATT 59.240 42.857 0.00 0.00 0.00 3.56
1660 4737 5.009610 GCAACAAGAACAATAACTGGGAAGA 59.990 40.000 0.00 0.00 0.00 2.87
1661 4738 5.221224 TGCAACAAGAACAATAACTGGGAAG 60.221 40.000 0.00 0.00 0.00 3.46
1666 4743 6.064846 AGTCTGCAACAAGAACAATAACTG 57.935 37.500 0.00 0.00 0.00 3.16
1688 4765 8.823818 CCCAGGACGTATACTTACAAAAATAAG 58.176 37.037 0.56 0.00 38.03 1.73
1689 4766 8.538701 TCCCAGGACGTATACTTACAAAAATAA 58.461 33.333 0.56 0.00 0.00 1.40
1690 4767 8.076910 TCCCAGGACGTATACTTACAAAAATA 57.923 34.615 0.56 0.00 0.00 1.40
1691 4768 6.949715 TCCCAGGACGTATACTTACAAAAAT 58.050 36.000 0.56 0.00 0.00 1.82
1692 4769 6.211184 TCTCCCAGGACGTATACTTACAAAAA 59.789 38.462 0.56 0.00 0.00 1.94
1693 4770 5.716228 TCTCCCAGGACGTATACTTACAAAA 59.284 40.000 0.56 0.00 0.00 2.44
1694 4771 5.126061 GTCTCCCAGGACGTATACTTACAAA 59.874 44.000 0.56 0.00 0.00 2.83
1695 4772 4.641989 GTCTCCCAGGACGTATACTTACAA 59.358 45.833 0.56 0.00 0.00 2.41
1696 4773 4.202441 GTCTCCCAGGACGTATACTTACA 58.798 47.826 0.56 0.00 0.00 2.41
1697 4774 4.827304 GTCTCCCAGGACGTATACTTAC 57.173 50.000 0.56 0.00 0.00 2.34
1707 4784 2.376109 TCTTGATACGTCTCCCAGGAC 58.624 52.381 0.00 0.00 0.00 3.85
1708 4785 2.820728 TCTTGATACGTCTCCCAGGA 57.179 50.000 0.00 0.00 0.00 3.86
1709 4786 2.297597 GGATCTTGATACGTCTCCCAGG 59.702 54.545 0.00 0.00 0.00 4.45
1710 4787 3.005261 CAGGATCTTGATACGTCTCCCAG 59.995 52.174 0.00 0.00 0.00 4.45
1711 4788 2.959030 CAGGATCTTGATACGTCTCCCA 59.041 50.000 0.00 0.00 0.00 4.37
1712 4789 3.223435 TCAGGATCTTGATACGTCTCCC 58.777 50.000 2.91 0.00 0.00 4.30
1713 4790 4.920640 TTCAGGATCTTGATACGTCTCC 57.079 45.455 8.52 0.00 0.00 3.71
1714 4791 6.758886 ACAATTTCAGGATCTTGATACGTCTC 59.241 38.462 8.52 0.00 0.00 3.36
1715 4792 6.644347 ACAATTTCAGGATCTTGATACGTCT 58.356 36.000 8.52 0.00 0.00 4.18
1716 4793 6.758886 AGACAATTTCAGGATCTTGATACGTC 59.241 38.462 8.52 13.04 0.00 4.34
1717 4794 6.644347 AGACAATTTCAGGATCTTGATACGT 58.356 36.000 8.52 5.30 0.00 3.57
1718 4795 7.545362 AAGACAATTTCAGGATCTTGATACG 57.455 36.000 8.52 2.26 0.00 3.06
1719 4796 9.565213 CAAAAGACAATTTCAGGATCTTGATAC 57.435 33.333 8.52 0.00 30.17 2.24
1720 4797 8.246180 GCAAAAGACAATTTCAGGATCTTGATA 58.754 33.333 8.52 4.34 30.17 2.15
1721 4798 7.039223 AGCAAAAGACAATTTCAGGATCTTGAT 60.039 33.333 8.52 0.00 30.17 2.57
1722 4799 6.266103 AGCAAAAGACAATTTCAGGATCTTGA 59.734 34.615 2.91 2.91 30.17 3.02
1723 4800 6.365247 CAGCAAAAGACAATTTCAGGATCTTG 59.635 38.462 0.00 0.00 30.17 3.02
1724 4801 6.266103 TCAGCAAAAGACAATTTCAGGATCTT 59.734 34.615 0.00 0.00 0.00 2.40
1725 4802 5.771666 TCAGCAAAAGACAATTTCAGGATCT 59.228 36.000 0.00 0.00 0.00 2.75
1726 4803 6.017400 TCAGCAAAAGACAATTTCAGGATC 57.983 37.500 0.00 0.00 0.00 3.36
1727 4804 6.600882 ATCAGCAAAAGACAATTTCAGGAT 57.399 33.333 0.00 0.00 0.00 3.24
1728 4805 6.716628 AGTATCAGCAAAAGACAATTTCAGGA 59.283 34.615 0.00 0.00 0.00 3.86
1729 4806 6.917533 AGTATCAGCAAAAGACAATTTCAGG 58.082 36.000 0.00 0.00 0.00 3.86
1735 4813 6.336842 AGCAAAGTATCAGCAAAAGACAAT 57.663 33.333 0.00 0.00 0.00 2.71
1746 4875 1.398390 GACCCGCAAGCAAAGTATCAG 59.602 52.381 0.00 0.00 0.00 2.90
1803 4948 8.682936 AGAAAGGAATAGCGATTCACATTAAT 57.317 30.769 19.41 0.68 42.95 1.40
1804 4949 8.506168 AAGAAAGGAATAGCGATTCACATTAA 57.494 30.769 19.41 0.00 42.95 1.40
1807 4952 5.235186 CGAAGAAAGGAATAGCGATTCACAT 59.765 40.000 19.41 6.01 42.95 3.21
1854 4999 2.421619 TCGCATAACATTGTGCTGTCA 58.578 42.857 10.98 0.00 42.27 3.58
1863 5008 7.307989 GCCTAAATGTCTACATCGCATAACATT 60.308 37.037 0.00 0.00 38.57 2.71
1872 5017 4.260784 GGCAAAGCCTAAATGTCTACATCG 60.261 45.833 0.00 0.00 46.69 3.84
1913 5113 1.745489 GCCAAGCTACAGTTCCCGG 60.745 63.158 0.00 0.00 0.00 5.73
2001 5738 2.099921 CCGATACCAGAACTCAGGTCAG 59.900 54.545 0.00 0.00 37.01 3.51
2011 5748 2.816411 AGTGAGAACCCGATACCAGAA 58.184 47.619 0.00 0.00 0.00 3.02
2073 5815 2.696707 ACCACAAGGAACTAAGACACGA 59.303 45.455 0.00 0.00 38.49 4.35
2077 5819 3.764237 TGGACCACAAGGAACTAAGAC 57.236 47.619 0.00 0.00 38.49 3.01
2083 5825 2.500229 TCGAAATGGACCACAAGGAAC 58.500 47.619 0.00 0.00 38.69 3.62
2089 5832 3.270027 CAGCTTATCGAAATGGACCACA 58.730 45.455 0.00 0.00 0.00 4.17
2092 5835 3.194005 TCCAGCTTATCGAAATGGACC 57.806 47.619 0.00 0.00 35.16 4.46
2111 5854 6.687105 GCACATGAACGGTGTATTATTTCTTC 59.313 38.462 0.00 0.00 38.51 2.87
2114 5857 5.737290 GTGCACATGAACGGTGTATTATTTC 59.263 40.000 13.17 0.00 38.51 2.17
2117 5860 4.257731 TGTGCACATGAACGGTGTATTAT 58.742 39.130 17.42 0.00 38.51 1.28
2124 5867 1.388547 AAGTTGTGCACATGAACGGT 58.611 45.000 22.39 6.95 0.00 4.83
2173 5919 2.806382 GCCAACAAGGGGTGACAAAATG 60.806 50.000 0.00 0.00 38.09 2.32
2174 5920 1.416030 GCCAACAAGGGGTGACAAAAT 59.584 47.619 0.00 0.00 38.09 1.82
2261 6007 6.071896 AGCATTTTCTTCTTTAACAGCCCTAC 60.072 38.462 0.00 0.00 0.00 3.18
2292 6038 2.192979 GCATCCTCCCCAATGCGA 59.807 61.111 0.00 0.00 38.95 5.10
2598 6357 7.611467 ACATTTATCATAAGCCTGTTCTGTTGA 59.389 33.333 0.00 0.00 0.00 3.18
2720 6480 9.754382 AATGAAATGACTTGGAAATATATGCAC 57.246 29.630 0.00 0.00 0.00 4.57
3115 7016 4.634883 CAGCAAGAGTCAGCATCAGTTATT 59.365 41.667 9.80 0.00 0.00 1.40
3153 7055 2.673258 ACCCTGGGTAAAACAAACAGG 58.327 47.619 18.99 0.00 46.36 4.00
3336 7250 4.006989 CCATTGGTATGAGAAACCGTTGA 58.993 43.478 0.00 0.00 40.08 3.18
3563 7498 4.817464 TGACTAGTACGCACCACAAAATTT 59.183 37.500 0.00 0.00 0.00 1.82
4248 8247 8.840200 ATTGGAGATTAACTGACTCTACCTTA 57.160 34.615 0.00 0.00 0.00 2.69
4469 8492 7.918076 ACAGAGGGAGTAACAGAAATATGAAA 58.082 34.615 0.00 0.00 0.00 2.69
4483 8506 6.325545 TCTTACAAAAGTGAACAGAGGGAGTA 59.674 38.462 0.00 0.00 34.13 2.59
4484 8507 3.933861 ACAAAAGTGAACAGAGGGAGT 57.066 42.857 0.00 0.00 0.00 3.85
4485 8508 5.467063 GTCTTACAAAAGTGAACAGAGGGAG 59.533 44.000 0.00 0.00 34.13 4.30
4486 8509 5.365619 GTCTTACAAAAGTGAACAGAGGGA 58.634 41.667 0.00 0.00 34.13 4.20
4487 8510 4.211374 CGTCTTACAAAAGTGAACAGAGGG 59.789 45.833 0.00 0.00 34.13 4.30
4488 8511 4.809426 ACGTCTTACAAAAGTGAACAGAGG 59.191 41.667 0.00 0.00 34.13 3.69
4489 8512 5.968387 ACGTCTTACAAAAGTGAACAGAG 57.032 39.130 0.00 0.00 34.13 3.35
4490 8513 6.730960 AAACGTCTTACAAAAGTGAACAGA 57.269 33.333 0.00 0.00 34.13 3.41
4491 8514 8.385111 TCTAAAACGTCTTACAAAAGTGAACAG 58.615 33.333 0.00 0.00 34.13 3.16
4492 8515 8.170553 GTCTAAAACGTCTTACAAAAGTGAACA 58.829 33.333 0.00 0.00 34.13 3.18
4493 8516 8.170553 TGTCTAAAACGTCTTACAAAAGTGAAC 58.829 33.333 0.00 0.00 34.13 3.18
4494 8517 8.254178 TGTCTAAAACGTCTTACAAAAGTGAA 57.746 30.769 0.00 0.00 34.13 3.18
4495 8518 7.464977 GCTGTCTAAAACGTCTTACAAAAGTGA 60.465 37.037 0.00 0.00 34.13 3.41
4496 8519 6.627671 GCTGTCTAAAACGTCTTACAAAAGTG 59.372 38.462 0.00 0.00 34.13 3.16
4497 8520 6.537660 AGCTGTCTAAAACGTCTTACAAAAGT 59.462 34.615 0.00 0.00 34.13 2.66
4498 8521 6.846283 CAGCTGTCTAAAACGTCTTACAAAAG 59.154 38.462 5.25 0.00 0.00 2.27
4499 8522 6.535865 TCAGCTGTCTAAAACGTCTTACAAAA 59.464 34.615 14.67 0.00 0.00 2.44
4500 8523 6.044046 TCAGCTGTCTAAAACGTCTTACAAA 58.956 36.000 14.67 0.00 0.00 2.83
4501 8524 5.593968 TCAGCTGTCTAAAACGTCTTACAA 58.406 37.500 14.67 0.00 0.00 2.41
4502 8525 5.190992 TCAGCTGTCTAAAACGTCTTACA 57.809 39.130 14.67 0.00 0.00 2.41
4503 8526 6.520792 TTTCAGCTGTCTAAAACGTCTTAC 57.479 37.500 14.67 0.00 0.00 2.34
4504 8527 7.439955 TCAATTTCAGCTGTCTAAAACGTCTTA 59.560 33.333 14.67 0.00 0.00 2.10
4505 8528 6.260050 TCAATTTCAGCTGTCTAAAACGTCTT 59.740 34.615 14.67 0.00 0.00 3.01
4506 8529 5.758296 TCAATTTCAGCTGTCTAAAACGTCT 59.242 36.000 14.67 0.00 0.00 4.18
4507 8530 5.985781 TCAATTTCAGCTGTCTAAAACGTC 58.014 37.500 14.67 0.00 0.00 4.34
4508 8531 6.038271 AGTTCAATTTCAGCTGTCTAAAACGT 59.962 34.615 14.67 0.00 0.00 3.99
4509 8532 6.358030 CAGTTCAATTTCAGCTGTCTAAAACG 59.642 38.462 14.67 3.27 0.00 3.60
4510 8533 7.196331 ACAGTTCAATTTCAGCTGTCTAAAAC 58.804 34.615 14.67 11.99 35.78 2.43
4511 8534 7.333528 ACAGTTCAATTTCAGCTGTCTAAAA 57.666 32.000 14.67 7.20 35.78 1.52
4512 8535 6.942532 ACAGTTCAATTTCAGCTGTCTAAA 57.057 33.333 14.67 7.59 35.78 1.85
4513 8536 6.942532 AACAGTTCAATTTCAGCTGTCTAA 57.057 33.333 14.67 7.33 39.19 2.10
4514 8537 6.942532 AAACAGTTCAATTTCAGCTGTCTA 57.057 33.333 14.67 0.36 39.19 2.59
4515 8538 5.841957 AAACAGTTCAATTTCAGCTGTCT 57.158 34.783 14.67 0.00 39.19 3.41
4516 8539 5.232838 CCAAAACAGTTCAATTTCAGCTGTC 59.767 40.000 14.67 0.00 39.19 3.51
4517 8540 5.111293 CCAAAACAGTTCAATTTCAGCTGT 58.889 37.500 14.67 0.00 41.51 4.40
4518 8541 4.508861 CCCAAAACAGTTCAATTTCAGCTG 59.491 41.667 7.63 7.63 0.00 4.24
4519 8542 4.162131 ACCCAAAACAGTTCAATTTCAGCT 59.838 37.500 0.00 0.00 0.00 4.24
4520 8543 4.270808 CACCCAAAACAGTTCAATTTCAGC 59.729 41.667 0.00 0.00 0.00 4.26
4521 8544 5.418676 ACACCCAAAACAGTTCAATTTCAG 58.581 37.500 0.00 0.00 0.00 3.02
4522 8545 5.413309 ACACCCAAAACAGTTCAATTTCA 57.587 34.783 0.00 0.00 0.00 2.69
4523 8546 5.641636 ACAACACCCAAAACAGTTCAATTTC 59.358 36.000 0.00 0.00 0.00 2.17
4524 8547 5.555966 ACAACACCCAAAACAGTTCAATTT 58.444 33.333 0.00 0.00 0.00 1.82
4525 8548 5.046663 AGACAACACCCAAAACAGTTCAATT 60.047 36.000 0.00 0.00 0.00 2.32
4526 8549 4.466015 AGACAACACCCAAAACAGTTCAAT 59.534 37.500 0.00 0.00 0.00 2.57
4527 8550 3.829601 AGACAACACCCAAAACAGTTCAA 59.170 39.130 0.00 0.00 0.00 2.69
4528 8551 3.426615 AGACAACACCCAAAACAGTTCA 58.573 40.909 0.00 0.00 0.00 3.18
4529 8552 4.450082 AAGACAACACCCAAAACAGTTC 57.550 40.909 0.00 0.00 0.00 3.01
4530 8553 7.648039 TTATAAGACAACACCCAAAACAGTT 57.352 32.000 0.00 0.00 0.00 3.16
4531 8554 7.648039 TTTATAAGACAACACCCAAAACAGT 57.352 32.000 0.00 0.00 0.00 3.55
4532 8555 8.141268 ACATTTATAAGACAACACCCAAAACAG 58.859 33.333 0.00 0.00 0.00 3.16
4533 8556 8.012957 ACATTTATAAGACAACACCCAAAACA 57.987 30.769 0.00 0.00 0.00 2.83
4534 8557 8.357402 AGACATTTATAAGACAACACCCAAAAC 58.643 33.333 0.00 0.00 0.00 2.43
4535 8558 8.472007 AGACATTTATAAGACAACACCCAAAA 57.528 30.769 0.00 0.00 0.00 2.44
4536 8559 9.575868 TTAGACATTTATAAGACAACACCCAAA 57.424 29.630 0.00 0.00 0.00 3.28
4537 8560 9.575868 TTTAGACATTTATAAGACAACACCCAA 57.424 29.630 0.00 0.00 0.00 4.12
4538 8561 9.575868 TTTTAGACATTTATAAGACAACACCCA 57.424 29.630 0.00 0.00 0.00 4.51
4539 8562 9.836076 GTTTTAGACATTTATAAGACAACACCC 57.164 33.333 0.00 0.00 0.00 4.61
4540 8563 9.537848 CGTTTTAGACATTTATAAGACAACACC 57.462 33.333 0.00 0.00 0.00 4.16
4552 8575 9.754382 ACTTCTGTAAGACGTTTTAGACATTTA 57.246 29.630 0.00 0.00 43.62 1.40
4553 8576 8.548721 CACTTCTGTAAGACGTTTTAGACATTT 58.451 33.333 0.00 0.00 43.62 2.32
4554 8577 7.924412 TCACTTCTGTAAGACGTTTTAGACATT 59.076 33.333 0.00 0.00 43.62 2.71
4555 8578 7.431249 TCACTTCTGTAAGACGTTTTAGACAT 58.569 34.615 0.00 0.00 43.62 3.06
4556 8579 6.798482 TCACTTCTGTAAGACGTTTTAGACA 58.202 36.000 0.00 0.00 43.62 3.41
4557 8580 7.553883 GTTCACTTCTGTAAGACGTTTTAGAC 58.446 38.462 0.00 0.00 43.62 2.59
4558 8581 6.415867 CGTTCACTTCTGTAAGACGTTTTAGA 59.584 38.462 0.00 0.00 43.62 2.10
4559 8582 6.345565 CCGTTCACTTCTGTAAGACGTTTTAG 60.346 42.308 0.00 0.00 43.62 1.85
4560 8583 5.459762 CCGTTCACTTCTGTAAGACGTTTTA 59.540 40.000 0.00 0.00 43.62 1.52
4561 8584 4.269363 CCGTTCACTTCTGTAAGACGTTTT 59.731 41.667 0.00 0.00 43.62 2.43
4562 8585 3.800506 CCGTTCACTTCTGTAAGACGTTT 59.199 43.478 0.00 0.00 43.62 3.60
4563 8586 3.067180 TCCGTTCACTTCTGTAAGACGTT 59.933 43.478 0.00 0.00 43.62 3.99
4567 8590 2.561419 CCCTCCGTTCACTTCTGTAAGA 59.439 50.000 0.00 0.00 44.68 2.10
4568 8591 2.561419 TCCCTCCGTTCACTTCTGTAAG 59.439 50.000 0.00 0.00 38.77 2.34
4569 8592 2.561419 CTCCCTCCGTTCACTTCTGTAA 59.439 50.000 0.00 0.00 0.00 2.41
4570 8593 2.168496 CTCCCTCCGTTCACTTCTGTA 58.832 52.381 0.00 0.00 0.00 2.74
4571 8594 0.969894 CTCCCTCCGTTCACTTCTGT 59.030 55.000 0.00 0.00 0.00 3.41
4572 8595 0.969894 ACTCCCTCCGTTCACTTCTG 59.030 55.000 0.00 0.00 0.00 3.02
4573 8596 2.225066 ACTACTCCCTCCGTTCACTTCT 60.225 50.000 0.00 0.00 0.00 2.85
4574 8597 2.169330 ACTACTCCCTCCGTTCACTTC 58.831 52.381 0.00 0.00 0.00 3.01
4575 8598 2.305858 ACTACTCCCTCCGTTCACTT 57.694 50.000 0.00 0.00 0.00 3.16
4576 8599 2.575279 TCTACTACTCCCTCCGTTCACT 59.425 50.000 0.00 0.00 0.00 3.41
4577 8600 2.996631 TCTACTACTCCCTCCGTTCAC 58.003 52.381 0.00 0.00 0.00 3.18
4578 8601 3.947612 ATCTACTACTCCCTCCGTTCA 57.052 47.619 0.00 0.00 0.00 3.18
4579 8602 3.243468 GCAATCTACTACTCCCTCCGTTC 60.243 52.174 0.00 0.00 0.00 3.95
4580 8603 2.694109 GCAATCTACTACTCCCTCCGTT 59.306 50.000 0.00 0.00 0.00 4.44
4581 8604 2.091775 AGCAATCTACTACTCCCTCCGT 60.092 50.000 0.00 0.00 0.00 4.69
4582 8605 2.294791 CAGCAATCTACTACTCCCTCCG 59.705 54.545 0.00 0.00 0.00 4.63
4583 8606 3.567397 TCAGCAATCTACTACTCCCTCC 58.433 50.000 0.00 0.00 0.00 4.30
4584 8607 4.586841 ACATCAGCAATCTACTACTCCCTC 59.413 45.833 0.00 0.00 0.00 4.30
4585 8608 4.551671 ACATCAGCAATCTACTACTCCCT 58.448 43.478 0.00 0.00 0.00 4.20
4586 8609 4.946478 ACATCAGCAATCTACTACTCCC 57.054 45.455 0.00 0.00 0.00 4.30
4587 8610 7.764443 TGTAAAACATCAGCAATCTACTACTCC 59.236 37.037 0.00 0.00 0.00 3.85
4588 8611 8.703604 TGTAAAACATCAGCAATCTACTACTC 57.296 34.615 0.00 0.00 0.00 2.59
4589 8612 9.672673 AATGTAAAACATCAGCAATCTACTACT 57.327 29.630 0.00 0.00 37.97 2.57
4590 8613 9.922305 GAATGTAAAACATCAGCAATCTACTAC 57.078 33.333 0.00 0.00 37.97 2.73
4631 8655 2.999185 ATGCTGGAAAGGGGAAAGAA 57.001 45.000 0.00 0.00 0.00 2.52
4910 9096 7.759489 TGGTATGTTCAGAAAACATTTAGCT 57.241 32.000 8.54 0.00 40.87 3.32
4986 9172 1.945394 GCTAGGTCGTCGTATTCCTCA 59.055 52.381 0.00 0.00 0.00 3.86
5169 9355 4.645535 CCATGTCCTTGGATATCGTGAAT 58.354 43.478 0.00 0.00 39.25 2.57
5254 9443 1.000843 TGTCTGATTCACAGGACACCG 59.999 52.381 3.77 0.00 45.76 4.94
5285 9474 3.737172 GCAGCGAACCGTGGCATT 61.737 61.111 0.00 0.00 0.00 3.56
5317 9527 1.003839 CTAACTGGAAGCGCCACCA 60.004 57.895 19.43 19.43 43.33 4.17
5367 9791 5.155278 ACAGTGATAACCACCGACATAAA 57.845 39.130 0.00 0.00 46.87 1.40
5384 9809 5.871524 ACAAGCATCAGTATGTCTAACAGTG 59.128 40.000 0.00 0.00 37.40 3.66
5425 9875 5.010719 TCGGCAAAGTACCAGATTCCTATAG 59.989 44.000 0.00 0.00 0.00 1.31
5426 9876 4.897076 TCGGCAAAGTACCAGATTCCTATA 59.103 41.667 0.00 0.00 0.00 1.31
5427 9877 3.709653 TCGGCAAAGTACCAGATTCCTAT 59.290 43.478 0.00 0.00 0.00 2.57
5428 9878 3.101437 TCGGCAAAGTACCAGATTCCTA 58.899 45.455 0.00 0.00 0.00 2.94
5429 9879 1.906574 TCGGCAAAGTACCAGATTCCT 59.093 47.619 0.00 0.00 0.00 3.36
5430 9880 2.396590 TCGGCAAAGTACCAGATTCC 57.603 50.000 0.00 0.00 0.00 3.01
5431 9881 3.531538 TCATCGGCAAAGTACCAGATTC 58.468 45.455 0.00 0.00 0.00 2.52
5432 9882 3.627395 TCATCGGCAAAGTACCAGATT 57.373 42.857 0.00 0.00 0.00 2.40
5433 9883 3.627395 TTCATCGGCAAAGTACCAGAT 57.373 42.857 0.00 0.00 0.00 2.90
5434 9884 3.071479 GTTTCATCGGCAAAGTACCAGA 58.929 45.455 0.00 0.00 0.00 3.86
5435 9885 3.074412 AGTTTCATCGGCAAAGTACCAG 58.926 45.455 0.00 0.00 0.00 4.00
5436 9886 3.071479 GAGTTTCATCGGCAAAGTACCA 58.929 45.455 0.00 0.00 0.00 3.25
5437 9887 3.071479 TGAGTTTCATCGGCAAAGTACC 58.929 45.455 0.00 0.00 0.00 3.34
5438 9888 4.742438 TTGAGTTTCATCGGCAAAGTAC 57.258 40.909 0.00 0.00 0.00 2.73
5439 9889 5.957842 ATTTGAGTTTCATCGGCAAAGTA 57.042 34.783 0.00 0.00 32.71 2.24
5440 9890 4.853924 ATTTGAGTTTCATCGGCAAAGT 57.146 36.364 0.00 0.00 32.71 2.66
5441 9891 6.254157 CCATTATTTGAGTTTCATCGGCAAAG 59.746 38.462 0.00 0.00 32.71 2.77
5442 9892 6.071672 TCCATTATTTGAGTTTCATCGGCAAA 60.072 34.615 0.00 0.00 33.59 3.68
5443 9893 5.417266 TCCATTATTTGAGTTTCATCGGCAA 59.583 36.000 0.00 0.00 0.00 4.52
5444 9894 4.946772 TCCATTATTTGAGTTTCATCGGCA 59.053 37.500 0.00 0.00 0.00 5.69
5445 9895 5.499139 TCCATTATTTGAGTTTCATCGGC 57.501 39.130 0.00 0.00 0.00 5.54
5446 9896 6.095440 ACCTTCCATTATTTGAGTTTCATCGG 59.905 38.462 0.00 0.00 0.00 4.18
5447 9897 7.088589 ACCTTCCATTATTTGAGTTTCATCG 57.911 36.000 0.00 0.00 0.00 3.84
5448 9898 8.522830 TCAACCTTCCATTATTTGAGTTTCATC 58.477 33.333 0.00 0.00 0.00 2.92
5449 9899 8.421249 TCAACCTTCCATTATTTGAGTTTCAT 57.579 30.769 0.00 0.00 0.00 2.57
5662 10113 3.005791 AGACCAATTTGGCTGTTGCTAAC 59.994 43.478 15.49 0.00 42.67 2.34
5679 10130 4.039245 CCTCCGCTTAGAAATATGAGACCA 59.961 45.833 0.00 0.00 0.00 4.02
5708 10159 5.187967 ACTGTTGCTAATAACTACAGCTCCT 59.812 40.000 5.44 0.00 42.31 3.69
5736 10194 0.970937 ACTGTCGCTAGGCTGGCTTA 60.971 55.000 20.92 5.98 0.00 3.09
5741 10199 1.374631 TTGCACTGTCGCTAGGCTG 60.375 57.895 0.00 0.00 0.00 4.85
5809 10273 4.574599 AAGTTCTTGGTTTCATCACAGC 57.425 40.909 0.00 0.00 0.00 4.40
5846 10330 1.413118 TGCTGATAGATTCCCGCAGA 58.587 50.000 0.00 0.00 0.00 4.26
5927 10411 3.000727 GCAAGTTATTGTACCGTGAGCT 58.999 45.455 0.00 0.00 38.76 4.09
5934 10418 6.806739 GGATGAAAACAGCAAGTTATTGTACC 59.193 38.462 0.00 0.00 40.26 3.34
5935 10419 7.367285 TGGATGAAAACAGCAAGTTATTGTAC 58.633 34.615 0.00 0.00 40.26 2.90
6027 10512 9.990360 TTAATCTTCATAAGGATGCGTACAATA 57.010 29.630 0.00 0.00 32.62 1.90
6058 10543 3.759418 TCGAGTTATCTTGCGAGTTCAG 58.241 45.455 0.00 0.00 0.00 3.02
6128 10613 9.487790 TTGTTTTTCTTCTTTTCTTGTGATTGT 57.512 25.926 0.00 0.00 0.00 2.71
6145 10630 5.040635 CCATGTGTTACGCTTTGTTTTTCT 58.959 37.500 0.00 0.00 0.00 2.52
6157 10649 3.071786 TGTGTTTTGCCATGTGTTACG 57.928 42.857 0.00 0.00 0.00 3.18
6160 10652 3.883830 TCTTGTGTTTTGCCATGTGTT 57.116 38.095 0.00 0.00 0.00 3.32
6166 10658 3.654414 ACGTTTTTCTTGTGTTTTGCCA 58.346 36.364 0.00 0.00 0.00 4.92
6187 10679 7.590139 CTGTATGCAGCTCTGGAAGTACCAA 62.590 48.000 0.00 0.00 41.07 3.67
6197 10689 1.676746 AATGCCTGTATGCAGCTCTG 58.323 50.000 5.11 0.00 45.93 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.