Multiple sequence alignment - TraesCS3D01G349100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G349100 chr3D 100.000 4554 0 0 1 4554 460444118 460448671 0.000000e+00 8410.0
1 TraesCS3D01G349100 chr3B 92.105 1710 90 22 680 2350 610555058 610556761 0.000000e+00 2368.0
2 TraesCS3D01G349100 chr3B 95.472 795 25 3 2399 3193 610557067 610557850 0.000000e+00 1258.0
3 TraesCS3D01G349100 chr3B 93.171 864 42 4 3295 4142 610558435 610559297 0.000000e+00 1253.0
4 TraesCS3D01G349100 chr3B 90.867 427 26 6 4139 4554 610559325 610559749 1.110000e-155 560.0
5 TraesCS3D01G349100 chr3B 86.408 206 12 7 499 688 610554813 610555018 1.280000e-50 211.0
6 TraesCS3D01G349100 chr3B 81.203 133 21 4 2075 2205 610535186 610535316 2.240000e-18 104.0
7 TraesCS3D01G349100 chr3B 96.296 54 2 0 2335 2388 610556777 610556830 6.280000e-14 89.8
8 TraesCS3D01G349100 chr3B 98.000 50 1 0 3247 3296 610558353 610558402 2.260000e-13 87.9
9 TraesCS3D01G349100 chr3B 91.304 46 4 0 3652 3697 708477603 708477558 3.800000e-06 63.9
10 TraesCS3D01G349100 chr3A 93.721 1290 51 6 3295 4554 602862209 602863498 0.000000e+00 1906.0
11 TraesCS3D01G349100 chr3A 86.741 1795 133 61 680 2390 602859275 602861048 0.000000e+00 1899.0
12 TraesCS3D01G349100 chr3A 96.111 900 31 3 2399 3296 602861279 602862176 0.000000e+00 1465.0
13 TraesCS3D01G349100 chr4B 78.400 125 19 5 2663 2782 26490443 26490564 1.760000e-09 75.0
14 TraesCS3D01G349100 chr4A 77.519 129 21 5 2658 2781 585029543 585029418 2.270000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G349100 chr3D 460444118 460448671 4553 False 8410.000000 8410 100.000000 1 4554 1 chr3D.!!$F1 4553
1 TraesCS3D01G349100 chr3B 610554813 610559749 4936 False 832.528571 2368 93.188429 499 4554 7 chr3B.!!$F2 4055
2 TraesCS3D01G349100 chr3A 602859275 602863498 4223 False 1756.666667 1906 92.191000 680 4554 3 chr3A.!!$F1 3874

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.033306 AGGAGGTTCTAGTCGACCCC 60.033 60.000 13.01 4.87 36.57 4.95 F
176 177 0.034337 TTTCGACCGAACCAAGAGGG 59.966 55.000 4.17 0.00 44.81 4.30 F
924 990 0.036388 TTCCATCTTCACAGGTCGCC 60.036 55.000 0.00 0.00 0.00 5.54 F
1261 1351 0.529378 GCTCTTCACCTGCAAATGGG 59.471 55.000 0.00 0.00 0.00 4.00 F
1664 1786 1.751924 GTCAAGGACTGCTCCGACTAT 59.248 52.381 0.00 0.00 42.22 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1635 1757 0.109086 CAGTCCTTGACGATGTCGCT 60.109 55.000 1.77 0.00 44.43 4.93 R
1926 2054 1.000896 GTGGACCTTGACCATGGGG 60.001 63.158 18.09 10.08 39.69 4.96 R
2833 3267 1.009675 GGGATTTGCGCGTATGCTG 60.010 57.895 8.43 0.00 39.65 4.41 R
3124 3558 1.891919 GTTCGTGGCCTGTCTGCAA 60.892 57.895 3.32 0.00 0.00 4.08 R
3780 4738 9.696917 ACATCATTTTTGAAATACCTTTCTCAC 57.303 29.630 0.41 0.00 41.18 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.882025 GAAGAGCAACGCAGAGGG 58.118 61.111 0.00 0.00 0.00 4.30
18 19 2.359230 AAGAGCAACGCAGAGGGC 60.359 61.111 0.00 0.00 39.90 5.19
27 28 4.193653 GCAGAGGGCGAAGTTCTC 57.806 61.111 0.56 0.00 0.00 2.87
28 29 1.448717 GCAGAGGGCGAAGTTCTCC 60.449 63.158 3.09 3.09 31.35 3.71
29 30 1.153745 CAGAGGGCGAAGTTCTCCG 60.154 63.158 5.82 0.00 31.35 4.63
34 35 3.952811 GCGAAGTTCTCCGCTGTT 58.047 55.556 0.56 0.00 46.96 3.16
35 36 3.117589 GCGAAGTTCTCCGCTGTTA 57.882 52.632 0.56 0.00 46.96 2.41
36 37 1.425412 GCGAAGTTCTCCGCTGTTAA 58.575 50.000 0.56 0.00 46.96 2.01
37 38 1.390463 GCGAAGTTCTCCGCTGTTAAG 59.610 52.381 0.56 0.00 46.96 1.85
38 39 1.993370 CGAAGTTCTCCGCTGTTAAGG 59.007 52.381 0.56 0.00 0.00 2.69
39 40 2.352421 CGAAGTTCTCCGCTGTTAAGGA 60.352 50.000 0.56 0.00 34.93 3.36
45 46 1.640917 TCCGCTGTTAAGGAGGTTCT 58.359 50.000 0.00 0.00 31.95 3.01
46 47 2.811410 TCCGCTGTTAAGGAGGTTCTA 58.189 47.619 0.00 0.00 31.95 2.10
47 48 2.758979 TCCGCTGTTAAGGAGGTTCTAG 59.241 50.000 0.00 0.00 31.95 2.43
48 49 2.496470 CCGCTGTTAAGGAGGTTCTAGT 59.504 50.000 0.00 0.00 0.00 2.57
49 50 3.429135 CCGCTGTTAAGGAGGTTCTAGTC 60.429 52.174 0.00 0.00 0.00 2.59
50 51 3.731264 CGCTGTTAAGGAGGTTCTAGTCG 60.731 52.174 0.00 0.00 0.00 4.18
51 52 3.442977 GCTGTTAAGGAGGTTCTAGTCGA 59.557 47.826 0.00 0.00 0.00 4.20
52 53 4.674885 GCTGTTAAGGAGGTTCTAGTCGAC 60.675 50.000 7.70 7.70 0.00 4.20
53 54 3.760684 TGTTAAGGAGGTTCTAGTCGACC 59.239 47.826 13.01 0.00 36.15 4.79
54 55 1.849977 AAGGAGGTTCTAGTCGACCC 58.150 55.000 13.01 5.76 36.57 4.46
55 56 0.033306 AGGAGGTTCTAGTCGACCCC 60.033 60.000 13.01 4.87 36.57 4.95
56 57 1.382692 GGAGGTTCTAGTCGACCCCG 61.383 65.000 13.01 0.59 36.57 5.73
57 58 0.679321 GAGGTTCTAGTCGACCCCGT 60.679 60.000 13.01 0.00 36.57 5.28
58 59 0.679321 AGGTTCTAGTCGACCCCGTC 60.679 60.000 13.01 0.46 36.57 4.79
67 68 3.053828 GACCCCGTCGTCCTTTGA 58.946 61.111 0.00 0.00 0.00 2.69
68 69 1.595357 GACCCCGTCGTCCTTTGAT 59.405 57.895 0.00 0.00 0.00 2.57
69 70 0.459759 GACCCCGTCGTCCTTTGATC 60.460 60.000 0.00 0.00 0.00 2.92
70 71 1.518572 CCCCGTCGTCCTTTGATCG 60.519 63.158 0.00 0.00 0.00 3.69
71 72 1.518572 CCCGTCGTCCTTTGATCGG 60.519 63.158 0.00 0.00 38.05 4.18
72 73 1.518572 CCGTCGTCCTTTGATCGGG 60.519 63.158 0.00 0.00 35.25 5.14
73 74 1.509463 CGTCGTCCTTTGATCGGGA 59.491 57.895 0.00 0.00 0.00 5.14
74 75 0.525668 CGTCGTCCTTTGATCGGGAG 60.526 60.000 2.69 0.00 31.66 4.30
75 76 0.806492 GTCGTCCTTTGATCGGGAGC 60.806 60.000 2.69 0.00 31.66 4.70
76 77 1.521681 CGTCCTTTGATCGGGAGCC 60.522 63.158 2.69 0.00 31.66 4.70
92 93 2.434884 CCGAACATGGCAGCGACT 60.435 61.111 0.00 0.00 0.00 4.18
93 94 1.153647 CCGAACATGGCAGCGACTA 60.154 57.895 0.00 0.00 0.00 2.59
94 95 1.148157 CCGAACATGGCAGCGACTAG 61.148 60.000 0.00 0.00 0.00 2.57
95 96 1.148157 CGAACATGGCAGCGACTAGG 61.148 60.000 0.00 0.00 0.00 3.02
96 97 0.175760 GAACATGGCAGCGACTAGGA 59.824 55.000 0.00 0.00 0.00 2.94
97 98 0.833287 AACATGGCAGCGACTAGGAT 59.167 50.000 0.00 0.00 0.00 3.24
98 99 0.833287 ACATGGCAGCGACTAGGATT 59.167 50.000 0.00 0.00 0.00 3.01
99 100 1.210478 ACATGGCAGCGACTAGGATTT 59.790 47.619 0.00 0.00 0.00 2.17
100 101 1.600957 CATGGCAGCGACTAGGATTTG 59.399 52.381 0.00 0.00 0.00 2.32
101 102 0.107703 TGGCAGCGACTAGGATTTGG 60.108 55.000 0.00 0.00 0.00 3.28
102 103 0.815615 GGCAGCGACTAGGATTTGGG 60.816 60.000 0.00 0.00 0.00 4.12
103 104 0.178068 GCAGCGACTAGGATTTGGGA 59.822 55.000 0.00 0.00 0.00 4.37
104 105 1.808133 GCAGCGACTAGGATTTGGGAG 60.808 57.143 0.00 0.00 0.00 4.30
105 106 0.466124 AGCGACTAGGATTTGGGAGC 59.534 55.000 0.00 0.00 0.00 4.70
106 107 0.876342 GCGACTAGGATTTGGGAGCG 60.876 60.000 0.00 0.00 0.00 5.03
107 108 0.249489 CGACTAGGATTTGGGAGCGG 60.249 60.000 0.00 0.00 0.00 5.52
108 109 0.533085 GACTAGGATTTGGGAGCGGC 60.533 60.000 0.00 0.00 0.00 6.53
109 110 0.983378 ACTAGGATTTGGGAGCGGCT 60.983 55.000 0.00 0.00 0.00 5.52
110 111 0.181350 CTAGGATTTGGGAGCGGCTT 59.819 55.000 2.97 0.00 0.00 4.35
111 112 0.107214 TAGGATTTGGGAGCGGCTTG 60.107 55.000 2.97 0.00 0.00 4.01
112 113 2.418083 GGATTTGGGAGCGGCTTGG 61.418 63.158 2.97 0.00 0.00 3.61
113 114 2.362889 ATTTGGGAGCGGCTTGGG 60.363 61.111 2.97 0.00 0.00 4.12
125 126 4.828409 CTTGGGCCAAAGCAGAGA 57.172 55.556 21.28 0.00 42.56 3.10
126 127 2.564471 CTTGGGCCAAAGCAGAGAG 58.436 57.895 21.28 1.30 42.56 3.20
127 128 0.037303 CTTGGGCCAAAGCAGAGAGA 59.963 55.000 21.28 0.00 42.56 3.10
128 129 0.700564 TTGGGCCAAAGCAGAGAGAT 59.299 50.000 18.51 0.00 42.56 2.75
129 130 0.034767 TGGGCCAAAGCAGAGAGATG 60.035 55.000 2.13 0.00 42.56 2.90
130 131 0.254178 GGGCCAAAGCAGAGAGATGA 59.746 55.000 4.39 0.00 42.56 2.92
131 132 1.666054 GGCCAAAGCAGAGAGATGAG 58.334 55.000 0.00 0.00 42.56 2.90
132 133 1.209019 GGCCAAAGCAGAGAGATGAGA 59.791 52.381 0.00 0.00 42.56 3.27
133 134 2.355513 GGCCAAAGCAGAGAGATGAGAA 60.356 50.000 0.00 0.00 42.56 2.87
134 135 2.937799 GCCAAAGCAGAGAGATGAGAAG 59.062 50.000 0.00 0.00 39.53 2.85
135 136 3.369261 GCCAAAGCAGAGAGATGAGAAGA 60.369 47.826 0.00 0.00 39.53 2.87
136 137 4.435425 CCAAAGCAGAGAGATGAGAAGAG 58.565 47.826 0.00 0.00 0.00 2.85
137 138 4.435425 CAAAGCAGAGAGATGAGAAGAGG 58.565 47.826 0.00 0.00 0.00 3.69
138 139 3.668141 AGCAGAGAGATGAGAAGAGGA 57.332 47.619 0.00 0.00 0.00 3.71
139 140 3.559069 AGCAGAGAGATGAGAAGAGGAG 58.441 50.000 0.00 0.00 0.00 3.69
140 141 3.202818 AGCAGAGAGATGAGAAGAGGAGA 59.797 47.826 0.00 0.00 0.00 3.71
141 142 3.567164 GCAGAGAGATGAGAAGAGGAGAG 59.433 52.174 0.00 0.00 0.00 3.20
142 143 4.139786 CAGAGAGATGAGAAGAGGAGAGG 58.860 52.174 0.00 0.00 0.00 3.69
143 144 4.047166 AGAGAGATGAGAAGAGGAGAGGA 58.953 47.826 0.00 0.00 0.00 3.71
144 145 4.103785 AGAGAGATGAGAAGAGGAGAGGAG 59.896 50.000 0.00 0.00 0.00 3.69
145 146 4.047166 AGAGATGAGAAGAGGAGAGGAGA 58.953 47.826 0.00 0.00 0.00 3.71
146 147 4.103785 AGAGATGAGAAGAGGAGAGGAGAG 59.896 50.000 0.00 0.00 0.00 3.20
147 148 3.788142 AGATGAGAAGAGGAGAGGAGAGT 59.212 47.826 0.00 0.00 0.00 3.24
148 149 3.364460 TGAGAAGAGGAGAGGAGAGTG 57.636 52.381 0.00 0.00 0.00 3.51
149 150 2.916269 TGAGAAGAGGAGAGGAGAGTGA 59.084 50.000 0.00 0.00 0.00 3.41
150 151 3.054434 TGAGAAGAGGAGAGGAGAGTGAG 60.054 52.174 0.00 0.00 0.00 3.51
151 152 2.024414 GAAGAGGAGAGGAGAGTGAGC 58.976 57.143 0.00 0.00 0.00 4.26
152 153 1.298953 AGAGGAGAGGAGAGTGAGCT 58.701 55.000 0.00 0.00 0.00 4.09
153 154 2.487775 AGAGGAGAGGAGAGTGAGCTA 58.512 52.381 0.00 0.00 0.00 3.32
154 155 2.439507 AGAGGAGAGGAGAGTGAGCTAG 59.560 54.545 0.00 0.00 0.00 3.42
155 156 1.494721 AGGAGAGGAGAGTGAGCTAGG 59.505 57.143 0.00 0.00 0.00 3.02
156 157 1.478654 GGAGAGGAGAGTGAGCTAGGG 60.479 61.905 0.00 0.00 0.00 3.53
157 158 1.214424 GAGAGGAGAGTGAGCTAGGGT 59.786 57.143 0.00 0.00 0.00 4.34
158 159 1.643811 AGAGGAGAGTGAGCTAGGGTT 59.356 52.381 0.00 0.00 0.00 4.11
159 160 2.043801 AGAGGAGAGTGAGCTAGGGTTT 59.956 50.000 0.00 0.00 0.00 3.27
160 161 2.429250 GAGGAGAGTGAGCTAGGGTTTC 59.571 54.545 0.00 0.00 0.00 2.78
161 162 1.135333 GGAGAGTGAGCTAGGGTTTCG 59.865 57.143 0.00 0.00 0.00 3.46
162 163 2.093106 GAGAGTGAGCTAGGGTTTCGA 58.907 52.381 0.00 0.00 0.00 3.71
163 164 1.819903 AGAGTGAGCTAGGGTTTCGAC 59.180 52.381 0.00 0.00 0.00 4.20
164 165 0.896226 AGTGAGCTAGGGTTTCGACC 59.104 55.000 0.00 0.00 0.00 4.79
165 166 0.458025 GTGAGCTAGGGTTTCGACCG 60.458 60.000 0.00 0.00 0.00 4.79
166 167 0.609957 TGAGCTAGGGTTTCGACCGA 60.610 55.000 0.00 0.00 0.00 4.69
167 168 0.529378 GAGCTAGGGTTTCGACCGAA 59.471 55.000 0.18 0.18 0.00 4.30
168 169 0.245813 AGCTAGGGTTTCGACCGAAC 59.754 55.000 4.17 1.08 33.41 3.95
169 170 0.738762 GCTAGGGTTTCGACCGAACC 60.739 60.000 8.71 8.71 33.41 3.62
170 171 0.604578 CTAGGGTTTCGACCGAACCA 59.395 55.000 17.12 0.00 33.41 3.67
171 172 1.001181 CTAGGGTTTCGACCGAACCAA 59.999 52.381 17.12 5.92 33.41 3.67
172 173 0.250166 AGGGTTTCGACCGAACCAAG 60.250 55.000 17.12 0.00 33.41 3.61
173 174 0.249996 GGGTTTCGACCGAACCAAGA 60.250 55.000 17.12 0.00 33.41 3.02
174 175 1.145803 GGTTTCGACCGAACCAAGAG 58.854 55.000 11.77 0.00 33.41 2.85
175 176 1.145803 GTTTCGACCGAACCAAGAGG 58.854 55.000 4.17 0.00 42.21 3.69
176 177 0.034337 TTTCGACCGAACCAAGAGGG 59.966 55.000 4.17 0.00 44.81 4.30
177 178 1.823169 TTCGACCGAACCAAGAGGGG 61.823 60.000 0.18 0.00 42.91 4.79
178 179 2.580601 CGACCGAACCAAGAGGGGT 61.581 63.158 0.00 0.00 45.04 4.95
179 180 1.003718 GACCGAACCAAGAGGGGTG 60.004 63.158 0.00 0.00 41.32 4.61
180 181 2.351276 CCGAACCAAGAGGGGTGG 59.649 66.667 0.00 0.00 41.32 4.61
181 182 2.351276 CGAACCAAGAGGGGTGGG 59.649 66.667 0.00 0.00 41.32 4.61
182 183 2.763902 GAACCAAGAGGGGTGGGG 59.236 66.667 0.00 0.00 41.32 4.96
183 184 2.863988 AACCAAGAGGGGTGGGGG 60.864 66.667 0.00 0.00 41.32 5.40
184 185 3.768265 AACCAAGAGGGGTGGGGGT 62.768 63.158 0.00 0.00 41.32 4.95
185 186 2.863988 CCAAGAGGGGTGGGGGTT 60.864 66.667 0.00 0.00 32.03 4.11
186 187 2.440599 CAAGAGGGGTGGGGGTTG 59.559 66.667 0.00 0.00 0.00 3.77
187 188 2.037677 AAGAGGGGTGGGGGTTGT 60.038 61.111 0.00 0.00 0.00 3.32
188 189 2.469765 AAGAGGGGTGGGGGTTGTG 61.470 63.158 0.00 0.00 0.00 3.33
189 190 3.979497 GAGGGGTGGGGGTTGTGG 61.979 72.222 0.00 0.00 0.00 4.17
192 193 3.840132 GGGTGGGGGTTGTGGGTT 61.840 66.667 0.00 0.00 0.00 4.11
193 194 2.284151 GGTGGGGGTTGTGGGTTT 59.716 61.111 0.00 0.00 0.00 3.27
194 195 1.542679 GGTGGGGGTTGTGGGTTTA 59.457 57.895 0.00 0.00 0.00 2.01
195 196 0.541063 GGTGGGGGTTGTGGGTTTAG 60.541 60.000 0.00 0.00 0.00 1.85
196 197 0.541063 GTGGGGGTTGTGGGTTTAGG 60.541 60.000 0.00 0.00 0.00 2.69
197 198 1.000041 TGGGGGTTGTGGGTTTAGGT 61.000 55.000 0.00 0.00 0.00 3.08
198 199 0.541063 GGGGGTTGTGGGTTTAGGTG 60.541 60.000 0.00 0.00 0.00 4.00
199 200 0.541063 GGGGTTGTGGGTTTAGGTGG 60.541 60.000 0.00 0.00 0.00 4.61
200 201 0.541063 GGGTTGTGGGTTTAGGTGGG 60.541 60.000 0.00 0.00 0.00 4.61
201 202 1.183030 GGTTGTGGGTTTAGGTGGGC 61.183 60.000 0.00 0.00 0.00 5.36
202 203 1.154221 TTGTGGGTTTAGGTGGGCC 59.846 57.895 0.00 0.00 0.00 5.80
203 204 1.656092 TTGTGGGTTTAGGTGGGCCA 61.656 55.000 0.00 0.00 37.19 5.36
204 205 1.304134 GTGGGTTTAGGTGGGCCAG 60.304 63.158 6.40 0.00 37.19 4.85
205 206 1.776710 TGGGTTTAGGTGGGCCAGT 60.777 57.895 6.40 0.00 37.19 4.00
206 207 1.304134 GGGTTTAGGTGGGCCAGTG 60.304 63.158 6.40 0.00 37.19 3.66
207 208 1.458927 GGTTTAGGTGGGCCAGTGT 59.541 57.895 6.40 0.00 37.19 3.55
208 209 0.893727 GGTTTAGGTGGGCCAGTGTG 60.894 60.000 6.40 0.00 37.19 3.82
209 210 0.109723 GTTTAGGTGGGCCAGTGTGA 59.890 55.000 6.40 0.00 37.19 3.58
210 211 0.400213 TTTAGGTGGGCCAGTGTGAG 59.600 55.000 6.40 0.00 37.19 3.51
211 212 0.766674 TTAGGTGGGCCAGTGTGAGT 60.767 55.000 6.40 0.00 37.19 3.41
212 213 1.192146 TAGGTGGGCCAGTGTGAGTC 61.192 60.000 6.40 0.00 37.19 3.36
213 214 2.818169 GGTGGGCCAGTGTGAGTCA 61.818 63.158 6.40 0.00 34.09 3.41
214 215 1.148273 GTGGGCCAGTGTGAGTCAA 59.852 57.895 6.40 0.00 0.00 3.18
215 216 1.148273 TGGGCCAGTGTGAGTCAAC 59.852 57.895 0.00 0.00 0.00 3.18
216 217 1.961277 GGGCCAGTGTGAGTCAACG 60.961 63.158 4.39 0.00 0.00 4.10
217 218 1.227556 GGCCAGTGTGAGTCAACGT 60.228 57.895 0.00 0.00 0.00 3.99
218 219 1.498865 GGCCAGTGTGAGTCAACGTG 61.499 60.000 0.00 0.00 0.00 4.49
219 220 0.529773 GCCAGTGTGAGTCAACGTGA 60.530 55.000 0.00 0.00 0.00 4.35
232 233 3.195041 ACGTGACAGACATGTTCGG 57.805 52.632 0.00 0.00 45.16 4.30
233 234 0.319555 ACGTGACAGACATGTTCGGG 60.320 55.000 0.00 0.00 45.16 5.14
234 235 0.319555 CGTGACAGACATGTTCGGGT 60.320 55.000 0.00 0.00 40.68 5.28
235 236 1.068125 CGTGACAGACATGTTCGGGTA 60.068 52.381 0.00 0.00 40.68 3.69
236 237 2.416836 CGTGACAGACATGTTCGGGTAT 60.417 50.000 0.00 0.00 40.68 2.73
237 238 3.596214 GTGACAGACATGTTCGGGTATT 58.404 45.455 0.00 0.00 40.68 1.89
238 239 4.000988 GTGACAGACATGTTCGGGTATTT 58.999 43.478 0.00 0.00 40.68 1.40
239 240 4.454504 GTGACAGACATGTTCGGGTATTTT 59.545 41.667 0.00 0.00 40.68 1.82
240 241 4.693566 TGACAGACATGTTCGGGTATTTTC 59.306 41.667 0.00 0.00 40.68 2.29
241 242 4.647611 ACAGACATGTTCGGGTATTTTCA 58.352 39.130 0.00 0.00 35.63 2.69
242 243 5.253330 ACAGACATGTTCGGGTATTTTCAT 58.747 37.500 0.00 0.00 35.63 2.57
243 244 6.411376 ACAGACATGTTCGGGTATTTTCATA 58.589 36.000 0.00 0.00 35.63 2.15
244 245 7.054124 ACAGACATGTTCGGGTATTTTCATAT 58.946 34.615 0.00 0.00 35.63 1.78
245 246 7.226720 ACAGACATGTTCGGGTATTTTCATATC 59.773 37.037 0.00 0.00 35.63 1.63
246 247 6.710744 AGACATGTTCGGGTATTTTCATATCC 59.289 38.462 0.00 0.00 33.10 2.59
251 252 3.831715 GGGTATTTTCATATCCGCTGC 57.168 47.619 0.00 0.00 0.00 5.25
252 253 3.412386 GGGTATTTTCATATCCGCTGCT 58.588 45.455 0.00 0.00 0.00 4.24
253 254 3.437049 GGGTATTTTCATATCCGCTGCTC 59.563 47.826 0.00 0.00 0.00 4.26
254 255 4.065088 GGTATTTTCATATCCGCTGCTCA 58.935 43.478 0.00 0.00 0.00 4.26
255 256 4.697352 GGTATTTTCATATCCGCTGCTCAT 59.303 41.667 0.00 0.00 0.00 2.90
256 257 5.182001 GGTATTTTCATATCCGCTGCTCATT 59.818 40.000 0.00 0.00 0.00 2.57
257 258 6.371548 GGTATTTTCATATCCGCTGCTCATTA 59.628 38.462 0.00 0.00 0.00 1.90
258 259 6.882610 ATTTTCATATCCGCTGCTCATTAA 57.117 33.333 0.00 0.00 0.00 1.40
259 260 6.691754 TTTTCATATCCGCTGCTCATTAAA 57.308 33.333 0.00 0.00 0.00 1.52
260 261 6.691754 TTTCATATCCGCTGCTCATTAAAA 57.308 33.333 0.00 0.00 0.00 1.52
261 262 5.673337 TCATATCCGCTGCTCATTAAAAC 57.327 39.130 0.00 0.00 0.00 2.43
262 263 5.368145 TCATATCCGCTGCTCATTAAAACT 58.632 37.500 0.00 0.00 0.00 2.66
263 264 5.237127 TCATATCCGCTGCTCATTAAAACTG 59.763 40.000 0.00 0.00 0.00 3.16
264 265 2.083774 TCCGCTGCTCATTAAAACTGG 58.916 47.619 0.00 0.00 0.00 4.00
265 266 1.812571 CCGCTGCTCATTAAAACTGGT 59.187 47.619 0.00 0.00 0.00 4.00
266 267 2.228822 CCGCTGCTCATTAAAACTGGTT 59.771 45.455 0.00 0.00 0.00 3.67
267 268 3.305335 CCGCTGCTCATTAAAACTGGTTT 60.305 43.478 0.00 0.00 0.00 3.27
268 269 4.298332 CGCTGCTCATTAAAACTGGTTTT 58.702 39.130 14.51 14.51 44.16 2.43
269 270 4.148696 CGCTGCTCATTAAAACTGGTTTTG 59.851 41.667 18.17 6.03 42.18 2.44
270 271 4.448732 GCTGCTCATTAAAACTGGTTTTGG 59.551 41.667 18.17 9.85 42.18 3.28
271 272 4.954875 TGCTCATTAAAACTGGTTTTGGG 58.045 39.130 18.17 6.75 42.18 4.12
272 273 4.202305 TGCTCATTAAAACTGGTTTTGGGG 60.202 41.667 18.17 10.48 42.18 4.96
273 274 4.314961 CTCATTAAAACTGGTTTTGGGGC 58.685 43.478 18.17 0.00 42.18 5.80
274 275 2.892784 TTAAAACTGGTTTTGGGGCG 57.107 45.000 18.17 0.00 42.18 6.13
275 276 1.041437 TAAAACTGGTTTTGGGGCGG 58.959 50.000 18.17 0.00 42.18 6.13
276 277 0.978667 AAAACTGGTTTTGGGGCGGT 60.979 50.000 10.16 0.00 40.84 5.68
277 278 0.978667 AAACTGGTTTTGGGGCGGTT 60.979 50.000 0.00 0.00 0.00 4.44
278 279 1.396607 AACTGGTTTTGGGGCGGTTC 61.397 55.000 0.00 0.00 0.00 3.62
279 280 1.830408 CTGGTTTTGGGGCGGTTCA 60.830 57.895 0.00 0.00 0.00 3.18
280 281 1.805428 CTGGTTTTGGGGCGGTTCAG 61.805 60.000 0.00 0.00 0.00 3.02
281 282 1.529713 GGTTTTGGGGCGGTTCAGA 60.530 57.895 0.00 0.00 0.00 3.27
282 283 1.658114 GTTTTGGGGCGGTTCAGAC 59.342 57.895 0.00 0.00 0.00 3.51
283 284 1.104577 GTTTTGGGGCGGTTCAGACA 61.105 55.000 0.00 0.00 0.00 3.41
284 285 0.821711 TTTTGGGGCGGTTCAGACAG 60.822 55.000 0.00 0.00 0.00 3.51
285 286 1.990160 TTTGGGGCGGTTCAGACAGT 61.990 55.000 0.00 0.00 0.00 3.55
286 287 2.047179 GGGGCGGTTCAGACAGTC 60.047 66.667 0.00 0.00 0.00 3.51
287 288 2.584391 GGGGCGGTTCAGACAGTCT 61.584 63.158 0.00 0.00 0.00 3.24
288 289 1.255667 GGGGCGGTTCAGACAGTCTA 61.256 60.000 1.67 0.00 0.00 2.59
289 290 0.606604 GGGCGGTTCAGACAGTCTAA 59.393 55.000 1.67 0.00 0.00 2.10
290 291 1.001633 GGGCGGTTCAGACAGTCTAAA 59.998 52.381 1.67 0.00 0.00 1.85
291 292 2.067013 GGCGGTTCAGACAGTCTAAAC 58.933 52.381 7.99 7.99 0.00 2.01
292 293 2.547218 GGCGGTTCAGACAGTCTAAACA 60.547 50.000 17.07 0.00 25.91 2.83
293 294 3.128349 GCGGTTCAGACAGTCTAAACAA 58.872 45.455 17.07 0.10 25.91 2.83
294 295 3.558418 GCGGTTCAGACAGTCTAAACAAA 59.442 43.478 17.07 0.00 25.91 2.83
295 296 4.213482 GCGGTTCAGACAGTCTAAACAAAT 59.787 41.667 17.07 0.00 25.91 2.32
296 297 5.407387 GCGGTTCAGACAGTCTAAACAAATA 59.593 40.000 17.07 0.00 25.91 1.40
297 298 6.092259 GCGGTTCAGACAGTCTAAACAAATAT 59.908 38.462 17.07 0.00 25.91 1.28
298 299 7.456253 CGGTTCAGACAGTCTAAACAAATATG 58.544 38.462 17.07 0.00 25.91 1.78
299 300 7.413000 CGGTTCAGACAGTCTAAACAAATATGG 60.413 40.741 17.07 0.00 25.91 2.74
300 301 7.606456 GGTTCAGACAGTCTAAACAAATATGGA 59.394 37.037 17.07 0.00 25.91 3.41
301 302 9.167311 GTTCAGACAGTCTAAACAAATATGGAT 57.833 33.333 11.32 0.00 25.15 3.41
304 305 9.823647 CAGACAGTCTAAACAAATATGGATAGT 57.176 33.333 1.67 0.00 0.00 2.12
315 316 8.682936 ACAAATATGGATAGTTTGAGATGACC 57.317 34.615 4.31 0.00 36.58 4.02
316 317 7.721399 ACAAATATGGATAGTTTGAGATGACCC 59.279 37.037 4.31 0.00 36.58 4.46
317 318 3.819564 TGGATAGTTTGAGATGACCCG 57.180 47.619 0.00 0.00 0.00 5.28
318 319 3.104512 TGGATAGTTTGAGATGACCCGT 58.895 45.455 0.00 0.00 0.00 5.28
319 320 3.517901 TGGATAGTTTGAGATGACCCGTT 59.482 43.478 0.00 0.00 0.00 4.44
320 321 4.712829 TGGATAGTTTGAGATGACCCGTTA 59.287 41.667 0.00 0.00 0.00 3.18
321 322 5.163447 TGGATAGTTTGAGATGACCCGTTAG 60.163 44.000 0.00 0.00 0.00 2.34
322 323 5.068723 GGATAGTTTGAGATGACCCGTTAGA 59.931 44.000 0.00 0.00 0.00 2.10
323 324 4.189639 AGTTTGAGATGACCCGTTAGAC 57.810 45.455 0.00 0.00 0.00 2.59
324 325 3.833070 AGTTTGAGATGACCCGTTAGACT 59.167 43.478 0.00 0.00 0.00 3.24
325 326 3.868757 TTGAGATGACCCGTTAGACTG 57.131 47.619 0.00 0.00 0.00 3.51
326 327 3.081710 TGAGATGACCCGTTAGACTGA 57.918 47.619 0.00 0.00 0.00 3.41
327 328 3.427573 TGAGATGACCCGTTAGACTGAA 58.572 45.455 0.00 0.00 0.00 3.02
328 329 4.023980 TGAGATGACCCGTTAGACTGAAT 58.976 43.478 0.00 0.00 0.00 2.57
329 330 4.466370 TGAGATGACCCGTTAGACTGAATT 59.534 41.667 0.00 0.00 0.00 2.17
330 331 5.046591 TGAGATGACCCGTTAGACTGAATTT 60.047 40.000 0.00 0.00 0.00 1.82
331 332 5.805728 AGATGACCCGTTAGACTGAATTTT 58.194 37.500 0.00 0.00 0.00 1.82
332 333 6.238648 AGATGACCCGTTAGACTGAATTTTT 58.761 36.000 0.00 0.00 0.00 1.94
354 355 3.785486 TGTCTATCCGCTCAGACAAATG 58.215 45.455 8.28 0.00 46.13 2.32
355 356 3.447229 TGTCTATCCGCTCAGACAAATGA 59.553 43.478 8.28 0.00 46.13 2.57
356 357 4.440663 TGTCTATCCGCTCAGACAAATGAG 60.441 45.833 8.28 0.00 46.13 2.90
357 358 2.322355 ATCCGCTCAGACAAATGAGG 57.678 50.000 5.92 0.00 45.66 3.86
358 359 0.391661 TCCGCTCAGACAAATGAGGC 60.392 55.000 5.92 0.00 45.66 4.70
359 360 1.699656 CCGCTCAGACAAATGAGGCG 61.700 60.000 5.92 8.97 45.66 5.52
360 361 1.427020 GCTCAGACAAATGAGGCGC 59.573 57.895 0.00 0.00 45.66 6.53
361 362 1.712081 CTCAGACAAATGAGGCGCG 59.288 57.895 0.00 0.00 42.52 6.86
362 363 1.005037 TCAGACAAATGAGGCGCGT 60.005 52.632 8.43 0.27 0.00 6.01
363 364 0.602638 TCAGACAAATGAGGCGCGTT 60.603 50.000 8.43 0.00 0.00 4.84
364 365 0.238289 CAGACAAATGAGGCGCGTTT 59.762 50.000 8.43 2.37 36.15 3.60
366 367 4.151417 CAAATGAGGCGCGTTTGG 57.849 55.556 23.14 8.82 45.51 3.28
367 368 1.444212 CAAATGAGGCGCGTTTGGG 60.444 57.895 23.14 3.88 45.51 4.12
368 369 1.602323 AAATGAGGCGCGTTTGGGA 60.602 52.632 8.43 0.00 34.50 4.37
369 370 1.586154 AAATGAGGCGCGTTTGGGAG 61.586 55.000 8.43 0.00 34.50 4.30
370 371 3.976701 ATGAGGCGCGTTTGGGAGG 62.977 63.158 8.43 0.00 0.00 4.30
383 384 2.922234 GGAGGGCCCTTGGAGATG 59.078 66.667 29.39 0.00 0.00 2.90
384 385 2.194326 GAGGGCCCTTGGAGATGC 59.806 66.667 29.39 6.39 0.00 3.91
385 386 2.286732 AGGGCCCTTGGAGATGCT 60.287 61.111 22.28 0.00 0.00 3.79
386 387 1.004758 AGGGCCCTTGGAGATGCTA 59.995 57.895 22.28 0.00 0.00 3.49
387 388 1.149401 GGGCCCTTGGAGATGCTAC 59.851 63.158 17.04 0.00 0.00 3.58
388 389 1.227674 GGCCCTTGGAGATGCTACG 60.228 63.158 0.00 0.00 0.00 3.51
389 390 1.686325 GGCCCTTGGAGATGCTACGA 61.686 60.000 0.00 0.00 0.00 3.43
390 391 0.249657 GCCCTTGGAGATGCTACGAG 60.250 60.000 0.00 0.00 0.00 4.18
391 392 0.390860 CCCTTGGAGATGCTACGAGG 59.609 60.000 6.03 6.03 43.96 4.63
392 393 0.249657 CCTTGGAGATGCTACGAGGC 60.250 60.000 0.00 0.00 38.97 4.70
393 394 0.249657 CTTGGAGATGCTACGAGGCC 60.250 60.000 0.00 0.00 0.00 5.19
394 395 2.016393 TTGGAGATGCTACGAGGCCG 62.016 60.000 0.00 0.00 42.50 6.13
404 405 4.787999 CGAGGCCGTGAGAACTAC 57.212 61.111 0.00 0.00 0.00 2.73
405 406 1.880894 CGAGGCCGTGAGAACTACA 59.119 57.895 0.00 0.00 0.00 2.74
406 407 0.242825 CGAGGCCGTGAGAACTACAA 59.757 55.000 0.00 0.00 0.00 2.41
407 408 1.336517 CGAGGCCGTGAGAACTACAAA 60.337 52.381 0.00 0.00 0.00 2.83
408 409 2.338500 GAGGCCGTGAGAACTACAAAG 58.662 52.381 0.00 0.00 0.00 2.77
409 410 1.002087 AGGCCGTGAGAACTACAAAGG 59.998 52.381 0.00 0.00 0.00 3.11
410 411 0.796927 GCCGTGAGAACTACAAAGGC 59.203 55.000 0.00 0.00 36.66 4.35
411 412 1.608283 GCCGTGAGAACTACAAAGGCT 60.608 52.381 0.00 0.00 38.94 4.58
412 413 2.767505 CCGTGAGAACTACAAAGGCTT 58.232 47.619 0.00 0.00 0.00 4.35
413 414 3.139077 CCGTGAGAACTACAAAGGCTTT 58.861 45.455 6.68 6.68 0.00 3.51
414 415 3.058914 CCGTGAGAACTACAAAGGCTTTG 60.059 47.826 32.52 32.52 45.95 2.77
415 416 3.807622 CGTGAGAACTACAAAGGCTTTGA 59.192 43.478 38.62 23.55 43.26 2.69
416 417 4.272504 CGTGAGAACTACAAAGGCTTTGAA 59.727 41.667 38.62 15.07 43.26 2.69
417 418 5.559035 CGTGAGAACTACAAAGGCTTTGAAG 60.559 44.000 38.62 18.67 43.26 3.02
418 419 5.297029 GTGAGAACTACAAAGGCTTTGAAGT 59.703 40.000 38.62 22.92 43.26 3.01
419 420 5.296780 TGAGAACTACAAAGGCTTTGAAGTG 59.703 40.000 38.62 26.34 43.26 3.16
420 421 4.580580 AGAACTACAAAGGCTTTGAAGTGG 59.419 41.667 38.62 23.72 43.26 4.00
421 422 4.164843 ACTACAAAGGCTTTGAAGTGGA 57.835 40.909 38.62 13.29 43.26 4.02
422 423 4.137543 ACTACAAAGGCTTTGAAGTGGAG 58.862 43.478 38.62 23.20 43.26 3.86
423 424 3.297134 ACAAAGGCTTTGAAGTGGAGA 57.703 42.857 38.62 0.00 43.26 3.71
424 425 3.631250 ACAAAGGCTTTGAAGTGGAGAA 58.369 40.909 38.62 0.00 43.26 2.87
425 426 3.633986 ACAAAGGCTTTGAAGTGGAGAAG 59.366 43.478 38.62 14.13 43.26 2.85
426 427 3.584733 AAGGCTTTGAAGTGGAGAAGT 57.415 42.857 0.00 0.00 0.00 3.01
427 428 4.706842 AAGGCTTTGAAGTGGAGAAGTA 57.293 40.909 0.00 0.00 0.00 2.24
428 429 4.009370 AGGCTTTGAAGTGGAGAAGTAC 57.991 45.455 0.00 0.00 0.00 2.73
429 430 3.648545 AGGCTTTGAAGTGGAGAAGTACT 59.351 43.478 0.00 0.00 0.00 2.73
430 431 4.838986 AGGCTTTGAAGTGGAGAAGTACTA 59.161 41.667 0.00 0.00 0.00 1.82
431 432 5.485708 AGGCTTTGAAGTGGAGAAGTACTAT 59.514 40.000 0.00 0.00 0.00 2.12
432 433 6.668283 AGGCTTTGAAGTGGAGAAGTACTATA 59.332 38.462 0.00 0.00 0.00 1.31
433 434 7.345914 AGGCTTTGAAGTGGAGAAGTACTATAT 59.654 37.037 0.00 0.00 0.00 0.86
434 435 7.988028 GGCTTTGAAGTGGAGAAGTACTATATT 59.012 37.037 0.00 0.00 0.00 1.28
463 464 6.670695 AAAAATAATCAGACCTGCCTTGTT 57.329 33.333 0.00 0.00 0.00 2.83
464 465 6.670695 AAAATAATCAGACCTGCCTTGTTT 57.329 33.333 0.00 0.00 0.00 2.83
465 466 5.904362 AATAATCAGACCTGCCTTGTTTC 57.096 39.130 0.00 0.00 0.00 2.78
466 467 3.515602 AATCAGACCTGCCTTGTTTCT 57.484 42.857 0.00 0.00 0.00 2.52
467 468 3.515602 ATCAGACCTGCCTTGTTTCTT 57.484 42.857 0.00 0.00 0.00 2.52
468 469 2.575532 TCAGACCTGCCTTGTTTCTTG 58.424 47.619 0.00 0.00 0.00 3.02
469 470 2.172505 TCAGACCTGCCTTGTTTCTTGA 59.827 45.455 0.00 0.00 0.00 3.02
470 471 2.951642 CAGACCTGCCTTGTTTCTTGAA 59.048 45.455 0.00 0.00 0.00 2.69
471 472 3.381272 CAGACCTGCCTTGTTTCTTGAAA 59.619 43.478 0.00 0.00 0.00 2.69
472 473 4.023291 AGACCTGCCTTGTTTCTTGAAAA 58.977 39.130 0.00 0.00 0.00 2.29
473 474 4.466015 AGACCTGCCTTGTTTCTTGAAAAA 59.534 37.500 0.00 0.00 0.00 1.94
552 553 2.383527 GGCGCTGGTCACGAAGAAG 61.384 63.158 7.64 0.00 0.00 2.85
572 573 3.387397 AGAGCACGTTGGTTTACTGTAC 58.613 45.455 0.00 0.00 0.00 2.90
574 575 3.128349 AGCACGTTGGTTTACTGTACAG 58.872 45.455 21.44 21.44 0.00 2.74
575 576 2.867975 GCACGTTGGTTTACTGTACAGT 59.132 45.455 30.13 30.13 45.02 3.55
590 591 6.946229 CTGTACAGTAAACAGTATGACACC 57.054 41.667 15.06 0.00 39.69 4.16
591 592 5.786311 TGTACAGTAAACAGTATGACACCC 58.214 41.667 0.00 0.00 39.69 4.61
592 593 4.281898 ACAGTAAACAGTATGACACCCC 57.718 45.455 0.00 0.00 39.69 4.95
593 594 3.259064 CAGTAAACAGTATGACACCCCG 58.741 50.000 0.00 0.00 39.69 5.73
594 595 3.056393 CAGTAAACAGTATGACACCCCGA 60.056 47.826 0.00 0.00 39.69 5.14
595 596 2.467566 AAACAGTATGACACCCCGAC 57.532 50.000 0.00 0.00 39.69 4.79
596 597 0.245539 AACAGTATGACACCCCGACG 59.754 55.000 0.00 0.00 39.69 5.12
638 655 3.036084 CGGATCATACCGTGCCGC 61.036 66.667 0.00 0.00 46.70 6.53
647 664 2.845752 TACCGTGCCGCTCAACCATC 62.846 60.000 0.00 0.00 0.00 3.51
664 681 1.676678 ATCTCCGCTGCGTGTACCAT 61.677 55.000 21.59 1.10 0.00 3.55
666 683 1.421410 CTCCGCTGCGTGTACCATTC 61.421 60.000 21.59 0.00 0.00 2.67
684 749 5.130145 ACCATTCTACCTCTTCTCCTTGATG 59.870 44.000 0.00 0.00 0.00 3.07
712 777 0.919710 GACCAGGCACCCCTATCTTT 59.080 55.000 0.00 0.00 40.33 2.52
899 964 1.372501 ATATATCCAGCACCACCCCC 58.627 55.000 0.00 0.00 0.00 5.40
924 990 0.036388 TTCCATCTTCACAGGTCGCC 60.036 55.000 0.00 0.00 0.00 5.54
938 1004 2.700897 AGGTCGCCTGCTGTTATATTCT 59.299 45.455 0.00 0.00 29.57 2.40
988 1058 1.597742 CTATCCACAGGGCATTTCGG 58.402 55.000 0.00 0.00 0.00 4.30
1021 1091 2.343101 TGGTAAATTCAGAAGCGACCG 58.657 47.619 0.00 0.00 0.00 4.79
1033 1103 1.374252 GCGACCGGCTCTTCTTTCA 60.374 57.895 0.00 0.00 39.11 2.69
1040 1110 2.860735 CCGGCTCTTCTTTCATAGTTCG 59.139 50.000 0.00 0.00 0.00 3.95
1048 1118 7.278211 TCTTCTTTCATAGTTCGTTCATTCG 57.722 36.000 0.00 0.00 0.00 3.34
1054 1124 1.493772 AGTTCGTTCATTCGCGTTGA 58.506 45.000 5.77 8.28 0.00 3.18
1058 1128 3.529634 TCGTTCATTCGCGTTGATTTT 57.470 38.095 5.77 0.00 0.00 1.82
1059 1129 3.222361 TCGTTCATTCGCGTTGATTTTG 58.778 40.909 5.77 2.14 0.00 2.44
1186 1275 4.399112 TCATATTTGTGTTTGCTAACGCG 58.601 39.130 17.49 3.53 45.56 6.01
1261 1351 0.529378 GCTCTTCACCTGCAAATGGG 59.471 55.000 0.00 0.00 0.00 4.00
1337 1427 7.601705 TTCCATTCTCCATAATTTCCATTCC 57.398 36.000 0.00 0.00 0.00 3.01
1383 1489 6.853279 AAATTCATTATTGTTTCGCTGTCG 57.147 33.333 0.00 0.00 0.00 4.35
1430 1536 2.614779 CAGCATATCGATGGCAGGTAG 58.385 52.381 21.18 6.38 33.26 3.18
1458 1564 2.404215 TCTACTCTTCAGCGTTGCAAC 58.596 47.619 19.89 19.89 0.00 4.17
1460 1566 2.526304 ACTCTTCAGCGTTGCAACTA 57.474 45.000 26.09 7.29 0.00 2.24
1461 1567 2.135933 ACTCTTCAGCGTTGCAACTAC 58.864 47.619 26.09 17.96 0.00 2.73
1635 1757 2.598565 AGGGCTACATATCGAGCTTCA 58.401 47.619 5.56 0.00 38.79 3.02
1664 1786 1.751924 GTCAAGGACTGCTCCGACTAT 59.248 52.381 0.00 0.00 42.22 2.12
1679 1801 3.502920 CGACTATTTCAAGAGCGTCTGT 58.497 45.455 0.00 0.00 0.00 3.41
1729 1856 7.938490 TCATTTACAGCTCCATTATCTATGCAA 59.062 33.333 0.00 0.00 32.60 4.08
1730 1857 7.734924 TTTACAGCTCCATTATCTATGCAAG 57.265 36.000 0.00 0.00 32.60 4.01
1943 2071 2.237965 CCCCCATGGTCAAGGTCCA 61.238 63.158 11.73 0.00 39.41 4.02
1959 2087 3.648067 AGGTCCACTTCTTGACTTGATCA 59.352 43.478 0.00 0.00 34.65 2.92
1976 2104 4.383173 TGATCAACATGCCATGCTAGTAG 58.617 43.478 4.17 0.00 0.00 2.57
1977 2105 2.564771 TCAACATGCCATGCTAGTAGC 58.435 47.619 15.56 15.56 42.82 3.58
1978 2106 2.171237 TCAACATGCCATGCTAGTAGCT 59.829 45.455 22.34 6.04 42.97 3.32
1979 2107 2.947652 CAACATGCCATGCTAGTAGCTT 59.052 45.455 22.34 13.85 42.97 3.74
1980 2108 2.843701 ACATGCCATGCTAGTAGCTTC 58.156 47.619 22.34 9.49 42.97 3.86
1981 2109 2.171237 ACATGCCATGCTAGTAGCTTCA 59.829 45.455 22.34 14.17 42.97 3.02
1982 2110 3.208594 CATGCCATGCTAGTAGCTTCAA 58.791 45.455 22.34 2.98 42.97 2.69
1983 2111 3.348647 TGCCATGCTAGTAGCTTCAAA 57.651 42.857 22.34 2.59 42.97 2.69
1984 2112 3.684908 TGCCATGCTAGTAGCTTCAAAA 58.315 40.909 22.34 1.83 42.97 2.44
1985 2113 3.691118 TGCCATGCTAGTAGCTTCAAAAG 59.309 43.478 22.34 4.80 42.97 2.27
2023 2151 5.235850 TGTAGCCTGTCAAATTGTCCTAA 57.764 39.130 0.00 0.00 0.00 2.69
2029 2157 6.267471 AGCCTGTCAAATTGTCCTAAAATTCA 59.733 34.615 0.00 0.00 0.00 2.57
2127 2297 2.646175 GGTGGTGGTGAGCGCTCTA 61.646 63.158 35.27 20.40 0.00 2.43
2193 2363 3.089284 TCCAGATCAGCTCGACAAAGTA 58.911 45.455 0.00 0.00 0.00 2.24
2277 2451 4.177026 ACGTTGAGATATGTGCAAGACTC 58.823 43.478 0.00 0.00 0.00 3.36
2288 2462 5.689383 TGTGCAAGACTCCATAGTTTTTC 57.311 39.130 0.00 0.00 35.56 2.29
2661 3095 3.557577 TCATGGTTCATTCACTTTGCG 57.442 42.857 0.00 0.00 0.00 4.85
2677 3111 7.213678 TCACTTTGCGGGATTTTAAAATCTTT 58.786 30.769 30.36 6.23 43.33 2.52
2723 3157 6.950842 TGAGATGTCATGTCCACTTTAATCT 58.049 36.000 7.46 0.00 0.00 2.40
2738 3172 8.398665 CCACTTTAATCTGTAGGCATTTTCTAC 58.601 37.037 0.00 0.00 38.00 2.59
2833 3267 5.447818 CCTCTATTCTTGTGAAACGAATGCC 60.448 44.000 0.00 0.00 42.39 4.40
3314 4257 3.758554 AGATTCTGTGCGCCACTTAATTT 59.241 39.130 4.18 1.01 35.11 1.82
3780 4738 2.686816 GCCATTGACACCCGAACCG 61.687 63.158 0.00 0.00 0.00 4.44
3800 4758 6.702716 ACCGTGAGAAAGGTATTTCAAAAA 57.297 33.333 3.78 0.00 46.10 1.94
3801 4759 7.284919 ACCGTGAGAAAGGTATTTCAAAAAT 57.715 32.000 3.78 0.00 46.10 1.82
3868 4826 3.551635 TCCAAGGATTTTAAGCCCCAA 57.448 42.857 0.00 0.00 34.20 4.12
4010 4976 1.731613 TCGCGGCTTAACACTCGTG 60.732 57.895 6.13 0.00 34.89 4.35
4015 4981 1.226746 GGCTTAACACTCGTGCAACT 58.773 50.000 0.00 0.00 31.75 3.16
4019 4985 2.148916 TAACACTCGTGCAACTCTGG 57.851 50.000 0.00 0.00 31.75 3.86
4178 5175 4.534797 TGGCCAAATATGACATGTCATCA 58.465 39.130 37.89 26.14 46.57 3.07
4315 5336 3.733684 GCTCGTGTTGTTCAACCATTGTT 60.734 43.478 12.23 0.00 34.14 2.83
4335 5356 2.380084 ACACGCCTCATGTTCGTTAT 57.620 45.000 6.85 0.00 33.84 1.89
4355 5376 1.528076 AACGTGCATCCAGGCAACA 60.528 52.632 0.00 0.00 46.93 3.33
4440 5461 1.974875 CCACCTTTACCGCCAACCC 60.975 63.158 0.00 0.00 0.00 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.394563 GCCCTCTGCGTTGCTCTTC 61.395 63.158 0.00 0.00 0.00 2.87
1 2 2.359230 GCCCTCTGCGTTGCTCTT 60.359 61.111 0.00 0.00 0.00 2.85
10 11 1.448717 GGAGAACTTCGCCCTCTGC 60.449 63.158 0.08 0.00 29.37 4.26
11 12 1.153745 CGGAGAACTTCGCCCTCTG 60.154 63.158 6.01 0.00 32.26 3.35
12 13 3.007973 GCGGAGAACTTCGCCCTCT 62.008 63.158 15.54 0.00 45.42 3.69
13 14 2.509561 GCGGAGAACTTCGCCCTC 60.510 66.667 15.54 0.00 45.42 4.30
18 19 1.993370 CCTTAACAGCGGAGAACTTCG 59.007 52.381 0.00 0.00 0.00 3.79
19 20 3.314541 TCCTTAACAGCGGAGAACTTC 57.685 47.619 0.00 0.00 0.00 3.01
25 26 1.550976 AGAACCTCCTTAACAGCGGAG 59.449 52.381 2.20 2.20 45.10 4.63
26 27 1.640917 AGAACCTCCTTAACAGCGGA 58.359 50.000 0.00 0.00 0.00 5.54
27 28 2.496470 ACTAGAACCTCCTTAACAGCGG 59.504 50.000 0.00 0.00 0.00 5.52
28 29 3.731264 CGACTAGAACCTCCTTAACAGCG 60.731 52.174 0.00 0.00 0.00 5.18
29 30 3.442977 TCGACTAGAACCTCCTTAACAGC 59.557 47.826 0.00 0.00 0.00 4.40
30 31 4.142425 GGTCGACTAGAACCTCCTTAACAG 60.142 50.000 16.46 0.00 0.00 3.16
31 32 3.760684 GGTCGACTAGAACCTCCTTAACA 59.239 47.826 16.46 0.00 0.00 2.41
32 33 4.368874 GGTCGACTAGAACCTCCTTAAC 57.631 50.000 16.46 0.00 0.00 2.01
50 51 0.459759 GATCAAAGGACGACGGGGTC 60.460 60.000 0.00 0.00 36.18 4.46
51 52 1.595357 GATCAAAGGACGACGGGGT 59.405 57.895 0.00 0.00 0.00 4.95
52 53 1.518572 CGATCAAAGGACGACGGGG 60.519 63.158 0.00 0.00 0.00 5.73
53 54 1.518572 CCGATCAAAGGACGACGGG 60.519 63.158 0.00 0.00 35.45 5.28
54 55 1.518572 CCCGATCAAAGGACGACGG 60.519 63.158 0.00 0.00 37.34 4.79
55 56 0.525668 CTCCCGATCAAAGGACGACG 60.526 60.000 0.00 0.00 0.00 5.12
56 57 0.806492 GCTCCCGATCAAAGGACGAC 60.806 60.000 0.00 0.00 0.00 4.34
57 58 1.515954 GCTCCCGATCAAAGGACGA 59.484 57.895 0.00 0.00 0.00 4.20
58 59 1.521681 GGCTCCCGATCAAAGGACG 60.522 63.158 0.00 0.00 0.00 4.79
59 60 4.542075 GGCTCCCGATCAAAGGAC 57.458 61.111 0.00 0.00 0.00 3.85
75 76 1.148157 CTAGTCGCTGCCATGTTCGG 61.148 60.000 0.00 0.00 0.00 4.30
76 77 1.148157 CCTAGTCGCTGCCATGTTCG 61.148 60.000 0.00 0.00 0.00 3.95
77 78 0.175760 TCCTAGTCGCTGCCATGTTC 59.824 55.000 0.00 0.00 0.00 3.18
78 79 0.833287 ATCCTAGTCGCTGCCATGTT 59.167 50.000 0.00 0.00 0.00 2.71
79 80 0.833287 AATCCTAGTCGCTGCCATGT 59.167 50.000 0.00 0.00 0.00 3.21
80 81 1.600957 CAAATCCTAGTCGCTGCCATG 59.399 52.381 0.00 0.00 0.00 3.66
81 82 1.475751 CCAAATCCTAGTCGCTGCCAT 60.476 52.381 0.00 0.00 0.00 4.40
82 83 0.107703 CCAAATCCTAGTCGCTGCCA 60.108 55.000 0.00 0.00 0.00 4.92
83 84 0.815615 CCCAAATCCTAGTCGCTGCC 60.816 60.000 0.00 0.00 0.00 4.85
84 85 0.178068 TCCCAAATCCTAGTCGCTGC 59.822 55.000 0.00 0.00 0.00 5.25
85 86 1.808133 GCTCCCAAATCCTAGTCGCTG 60.808 57.143 0.00 0.00 0.00 5.18
86 87 0.466124 GCTCCCAAATCCTAGTCGCT 59.534 55.000 0.00 0.00 0.00 4.93
87 88 0.876342 CGCTCCCAAATCCTAGTCGC 60.876 60.000 0.00 0.00 0.00 5.19
88 89 0.249489 CCGCTCCCAAATCCTAGTCG 60.249 60.000 0.00 0.00 0.00 4.18
89 90 0.533085 GCCGCTCCCAAATCCTAGTC 60.533 60.000 0.00 0.00 0.00 2.59
90 91 0.983378 AGCCGCTCCCAAATCCTAGT 60.983 55.000 0.00 0.00 0.00 2.57
91 92 0.181350 AAGCCGCTCCCAAATCCTAG 59.819 55.000 0.00 0.00 0.00 3.02
92 93 0.107214 CAAGCCGCTCCCAAATCCTA 60.107 55.000 0.00 0.00 0.00 2.94
93 94 1.379044 CAAGCCGCTCCCAAATCCT 60.379 57.895 0.00 0.00 0.00 3.24
94 95 2.418083 CCAAGCCGCTCCCAAATCC 61.418 63.158 0.00 0.00 0.00 3.01
95 96 2.418083 CCCAAGCCGCTCCCAAATC 61.418 63.158 0.00 0.00 0.00 2.17
96 97 2.362889 CCCAAGCCGCTCCCAAAT 60.363 61.111 0.00 0.00 0.00 2.32
107 108 1.593296 CTCTCTGCTTTGGCCCAAGC 61.593 60.000 29.90 29.90 37.74 4.01
108 109 0.037303 TCTCTCTGCTTTGGCCCAAG 59.963 55.000 12.26 12.26 37.74 3.61
109 110 0.700564 ATCTCTCTGCTTTGGCCCAA 59.299 50.000 0.00 0.00 37.74 4.12
110 111 0.034767 CATCTCTCTGCTTTGGCCCA 60.035 55.000 0.00 0.00 37.74 5.36
111 112 0.254178 TCATCTCTCTGCTTTGGCCC 59.746 55.000 0.00 0.00 37.74 5.80
112 113 1.209019 TCTCATCTCTCTGCTTTGGCC 59.791 52.381 0.00 0.00 37.74 5.36
113 114 2.687700 TCTCATCTCTCTGCTTTGGC 57.312 50.000 0.00 0.00 39.26 4.52
114 115 4.435425 CTCTTCTCATCTCTCTGCTTTGG 58.565 47.826 0.00 0.00 0.00 3.28
115 116 4.160065 TCCTCTTCTCATCTCTCTGCTTTG 59.840 45.833 0.00 0.00 0.00 2.77
116 117 4.352009 TCCTCTTCTCATCTCTCTGCTTT 58.648 43.478 0.00 0.00 0.00 3.51
117 118 3.956199 CTCCTCTTCTCATCTCTCTGCTT 59.044 47.826 0.00 0.00 0.00 3.91
118 119 3.202818 TCTCCTCTTCTCATCTCTCTGCT 59.797 47.826 0.00 0.00 0.00 4.24
119 120 3.554934 TCTCCTCTTCTCATCTCTCTGC 58.445 50.000 0.00 0.00 0.00 4.26
120 121 4.139786 CCTCTCCTCTTCTCATCTCTCTG 58.860 52.174 0.00 0.00 0.00 3.35
121 122 4.047166 TCCTCTCCTCTTCTCATCTCTCT 58.953 47.826 0.00 0.00 0.00 3.10
122 123 4.103153 TCTCCTCTCCTCTTCTCATCTCTC 59.897 50.000 0.00 0.00 0.00 3.20
123 124 4.047166 TCTCCTCTCCTCTTCTCATCTCT 58.953 47.826 0.00 0.00 0.00 3.10
124 125 4.141390 ACTCTCCTCTCCTCTTCTCATCTC 60.141 50.000 0.00 0.00 0.00 2.75
125 126 3.788142 ACTCTCCTCTCCTCTTCTCATCT 59.212 47.826 0.00 0.00 0.00 2.90
126 127 3.885297 CACTCTCCTCTCCTCTTCTCATC 59.115 52.174 0.00 0.00 0.00 2.92
127 128 3.527253 TCACTCTCCTCTCCTCTTCTCAT 59.473 47.826 0.00 0.00 0.00 2.90
128 129 2.916269 TCACTCTCCTCTCCTCTTCTCA 59.084 50.000 0.00 0.00 0.00 3.27
129 130 3.545703 CTCACTCTCCTCTCCTCTTCTC 58.454 54.545 0.00 0.00 0.00 2.87
130 131 2.357154 GCTCACTCTCCTCTCCTCTTCT 60.357 54.545 0.00 0.00 0.00 2.85
131 132 2.024414 GCTCACTCTCCTCTCCTCTTC 58.976 57.143 0.00 0.00 0.00 2.87
132 133 1.640670 AGCTCACTCTCCTCTCCTCTT 59.359 52.381 0.00 0.00 0.00 2.85
133 134 1.298953 AGCTCACTCTCCTCTCCTCT 58.701 55.000 0.00 0.00 0.00 3.69
134 135 2.487265 CCTAGCTCACTCTCCTCTCCTC 60.487 59.091 0.00 0.00 0.00 3.71
135 136 1.494721 CCTAGCTCACTCTCCTCTCCT 59.505 57.143 0.00 0.00 0.00 3.69
136 137 1.478654 CCCTAGCTCACTCTCCTCTCC 60.479 61.905 0.00 0.00 0.00 3.71
137 138 1.214424 ACCCTAGCTCACTCTCCTCTC 59.786 57.143 0.00 0.00 0.00 3.20
138 139 1.304891 ACCCTAGCTCACTCTCCTCT 58.695 55.000 0.00 0.00 0.00 3.69
139 140 2.153034 AACCCTAGCTCACTCTCCTC 57.847 55.000 0.00 0.00 0.00 3.71
140 141 2.462723 GAAACCCTAGCTCACTCTCCT 58.537 52.381 0.00 0.00 0.00 3.69
141 142 1.135333 CGAAACCCTAGCTCACTCTCC 59.865 57.143 0.00 0.00 0.00 3.71
142 143 2.093106 TCGAAACCCTAGCTCACTCTC 58.907 52.381 0.00 0.00 0.00 3.20
143 144 1.819903 GTCGAAACCCTAGCTCACTCT 59.180 52.381 0.00 0.00 0.00 3.24
144 145 1.135053 GGTCGAAACCCTAGCTCACTC 60.135 57.143 0.00 0.00 39.93 3.51
145 146 0.896226 GGTCGAAACCCTAGCTCACT 59.104 55.000 0.00 0.00 39.93 3.41
146 147 0.458025 CGGTCGAAACCCTAGCTCAC 60.458 60.000 0.00 0.00 43.21 3.51
147 148 0.609957 TCGGTCGAAACCCTAGCTCA 60.610 55.000 0.00 0.00 43.21 4.26
148 149 0.529378 TTCGGTCGAAACCCTAGCTC 59.471 55.000 3.12 0.00 43.21 4.09
149 150 0.245813 GTTCGGTCGAAACCCTAGCT 59.754 55.000 7.40 0.00 43.21 3.32
150 151 0.738762 GGTTCGGTCGAAACCCTAGC 60.739 60.000 9.73 0.00 43.21 3.42
151 152 0.604578 TGGTTCGGTCGAAACCCTAG 59.395 55.000 16.98 0.00 43.21 3.02
152 153 1.001181 CTTGGTTCGGTCGAAACCCTA 59.999 52.381 16.98 7.47 43.21 3.53
153 154 0.250166 CTTGGTTCGGTCGAAACCCT 60.250 55.000 16.98 0.00 43.21 4.34
154 155 0.249996 TCTTGGTTCGGTCGAAACCC 60.250 55.000 16.98 11.17 43.21 4.11
155 156 1.145803 CTCTTGGTTCGGTCGAAACC 58.854 55.000 16.98 10.06 40.85 3.27
156 157 1.145803 CCTCTTGGTTCGGTCGAAAC 58.854 55.000 13.49 13.49 41.83 2.78
157 158 0.034337 CCCTCTTGGTTCGGTCGAAA 59.966 55.000 7.40 0.00 35.75 3.46
158 159 1.669440 CCCTCTTGGTTCGGTCGAA 59.331 57.895 1.33 1.33 0.00 3.71
159 160 2.280552 CCCCTCTTGGTTCGGTCGA 61.281 63.158 0.00 0.00 0.00 4.20
160 161 2.264794 CCCCTCTTGGTTCGGTCG 59.735 66.667 0.00 0.00 0.00 4.79
161 162 1.003718 CACCCCTCTTGGTTCGGTC 60.004 63.158 0.00 0.00 36.12 4.79
162 163 2.526046 CCACCCCTCTTGGTTCGGT 61.526 63.158 0.00 0.00 36.12 4.69
163 164 2.351276 CCACCCCTCTTGGTTCGG 59.649 66.667 0.00 0.00 36.12 4.30
164 165 2.351276 CCCACCCCTCTTGGTTCG 59.649 66.667 0.00 0.00 36.12 3.95
165 166 2.763902 CCCCACCCCTCTTGGTTC 59.236 66.667 0.00 0.00 36.12 3.62
166 167 2.863988 CCCCCACCCCTCTTGGTT 60.864 66.667 0.00 0.00 36.12 3.67
167 168 3.768265 AACCCCCACCCCTCTTGGT 62.768 63.158 0.00 0.00 39.96 3.67
168 169 2.863988 AACCCCCACCCCTCTTGG 60.864 66.667 0.00 0.00 0.00 3.61
169 170 2.440599 CAACCCCCACCCCTCTTG 59.559 66.667 0.00 0.00 0.00 3.02
170 171 2.037677 ACAACCCCCACCCCTCTT 60.038 61.111 0.00 0.00 0.00 2.85
171 172 2.858974 CACAACCCCCACCCCTCT 60.859 66.667 0.00 0.00 0.00 3.69
172 173 3.979497 CCACAACCCCCACCCCTC 61.979 72.222 0.00 0.00 0.00 4.30
175 176 2.021318 TAAACCCACAACCCCCACCC 62.021 60.000 0.00 0.00 0.00 4.61
176 177 0.541063 CTAAACCCACAACCCCCACC 60.541 60.000 0.00 0.00 0.00 4.61
177 178 0.541063 CCTAAACCCACAACCCCCAC 60.541 60.000 0.00 0.00 0.00 4.61
178 179 1.000041 ACCTAAACCCACAACCCCCA 61.000 55.000 0.00 0.00 0.00 4.96
179 180 0.541063 CACCTAAACCCACAACCCCC 60.541 60.000 0.00 0.00 0.00 5.40
180 181 0.541063 CCACCTAAACCCACAACCCC 60.541 60.000 0.00 0.00 0.00 4.95
181 182 0.541063 CCCACCTAAACCCACAACCC 60.541 60.000 0.00 0.00 0.00 4.11
182 183 1.183030 GCCCACCTAAACCCACAACC 61.183 60.000 0.00 0.00 0.00 3.77
183 184 1.183030 GGCCCACCTAAACCCACAAC 61.183 60.000 0.00 0.00 0.00 3.32
184 185 1.154221 GGCCCACCTAAACCCACAA 59.846 57.895 0.00 0.00 0.00 3.33
185 186 2.075355 CTGGCCCACCTAAACCCACA 62.075 60.000 0.00 0.00 36.63 4.17
186 187 1.304134 CTGGCCCACCTAAACCCAC 60.304 63.158 0.00 0.00 36.63 4.61
187 188 1.776710 ACTGGCCCACCTAAACCCA 60.777 57.895 0.00 0.00 36.63 4.51
188 189 1.304134 CACTGGCCCACCTAAACCC 60.304 63.158 0.00 0.00 36.63 4.11
189 190 0.893727 CACACTGGCCCACCTAAACC 60.894 60.000 0.00 0.00 36.63 3.27
190 191 0.109723 TCACACTGGCCCACCTAAAC 59.890 55.000 0.00 0.00 36.63 2.01
191 192 0.400213 CTCACACTGGCCCACCTAAA 59.600 55.000 0.00 0.00 36.63 1.85
192 193 0.766674 ACTCACACTGGCCCACCTAA 60.767 55.000 0.00 0.00 36.63 2.69
193 194 1.152118 ACTCACACTGGCCCACCTA 60.152 57.895 0.00 0.00 36.63 3.08
194 195 2.448542 ACTCACACTGGCCCACCT 60.449 61.111 0.00 0.00 36.63 4.00
195 196 2.032681 GACTCACACTGGCCCACC 59.967 66.667 0.00 0.00 0.00 4.61
196 197 1.148273 TTGACTCACACTGGCCCAC 59.852 57.895 0.00 0.00 0.00 4.61
197 198 1.148273 GTTGACTCACACTGGCCCA 59.852 57.895 0.00 0.00 0.00 5.36
198 199 1.961277 CGTTGACTCACACTGGCCC 60.961 63.158 0.00 0.00 0.00 5.80
199 200 1.227556 ACGTTGACTCACACTGGCC 60.228 57.895 0.00 0.00 0.00 5.36
200 201 0.529773 TCACGTTGACTCACACTGGC 60.530 55.000 0.00 0.00 0.00 4.85
201 202 1.209128 GTCACGTTGACTCACACTGG 58.791 55.000 9.86 0.00 43.73 4.00
211 212 2.124122 CGAACATGTCTGTCACGTTGA 58.876 47.619 0.00 0.00 32.47 3.18
212 213 1.192312 CCGAACATGTCTGTCACGTTG 59.808 52.381 0.00 0.00 32.47 4.10
213 214 1.497991 CCGAACATGTCTGTCACGTT 58.502 50.000 0.00 0.00 35.09 3.99
214 215 0.319555 CCCGAACATGTCTGTCACGT 60.320 55.000 0.00 0.00 35.10 4.49
215 216 0.319555 ACCCGAACATGTCTGTCACG 60.320 55.000 0.00 0.00 33.36 4.35
216 217 2.736144 TACCCGAACATGTCTGTCAC 57.264 50.000 0.00 0.00 33.36 3.67
217 218 3.973206 AATACCCGAACATGTCTGTCA 57.027 42.857 0.00 0.00 33.36 3.58
218 219 4.693566 TGAAAATACCCGAACATGTCTGTC 59.306 41.667 0.00 0.00 33.36 3.51
219 220 4.647611 TGAAAATACCCGAACATGTCTGT 58.352 39.130 0.00 0.00 37.12 3.41
220 221 5.818136 ATGAAAATACCCGAACATGTCTG 57.182 39.130 0.00 0.00 0.00 3.51
221 222 6.710744 GGATATGAAAATACCCGAACATGTCT 59.289 38.462 0.00 0.00 0.00 3.41
222 223 6.347402 CGGATATGAAAATACCCGAACATGTC 60.347 42.308 0.00 0.00 39.31 3.06
223 224 5.468746 CGGATATGAAAATACCCGAACATGT 59.531 40.000 0.00 0.00 39.31 3.21
224 225 5.616866 GCGGATATGAAAATACCCGAACATG 60.617 44.000 2.65 0.00 39.31 3.21
225 226 4.454504 GCGGATATGAAAATACCCGAACAT 59.545 41.667 2.65 0.00 39.31 2.71
226 227 3.810941 GCGGATATGAAAATACCCGAACA 59.189 43.478 2.65 0.00 39.31 3.18
227 228 4.062991 AGCGGATATGAAAATACCCGAAC 58.937 43.478 2.65 0.00 39.31 3.95
228 229 4.062293 CAGCGGATATGAAAATACCCGAA 58.938 43.478 2.65 0.00 39.31 4.30
229 230 3.659786 CAGCGGATATGAAAATACCCGA 58.340 45.455 2.65 0.00 39.31 5.14
230 231 2.159627 GCAGCGGATATGAAAATACCCG 59.840 50.000 0.00 0.00 39.88 5.28
231 232 3.412386 AGCAGCGGATATGAAAATACCC 58.588 45.455 0.00 0.00 0.00 3.69
232 233 4.065088 TGAGCAGCGGATATGAAAATACC 58.935 43.478 0.00 0.00 0.00 2.73
233 234 5.869753 ATGAGCAGCGGATATGAAAATAC 57.130 39.130 0.00 0.00 0.00 1.89
234 235 7.977789 TTAATGAGCAGCGGATATGAAAATA 57.022 32.000 0.00 0.00 0.00 1.40
235 236 6.882610 TTAATGAGCAGCGGATATGAAAAT 57.117 33.333 0.00 0.00 0.00 1.82
236 237 6.691754 TTTAATGAGCAGCGGATATGAAAA 57.308 33.333 0.00 0.00 0.00 2.29
237 238 6.318648 AGTTTTAATGAGCAGCGGATATGAAA 59.681 34.615 0.00 0.00 0.00 2.69
238 239 5.822519 AGTTTTAATGAGCAGCGGATATGAA 59.177 36.000 0.00 0.00 0.00 2.57
239 240 5.237127 CAGTTTTAATGAGCAGCGGATATGA 59.763 40.000 0.00 0.00 0.00 2.15
240 241 5.446709 CAGTTTTAATGAGCAGCGGATATG 58.553 41.667 0.00 0.00 0.00 1.78
241 242 4.516698 CCAGTTTTAATGAGCAGCGGATAT 59.483 41.667 0.00 0.00 0.00 1.63
242 243 3.876914 CCAGTTTTAATGAGCAGCGGATA 59.123 43.478 0.00 0.00 0.00 2.59
243 244 2.684881 CCAGTTTTAATGAGCAGCGGAT 59.315 45.455 0.00 0.00 0.00 4.18
244 245 2.083774 CCAGTTTTAATGAGCAGCGGA 58.916 47.619 0.00 0.00 0.00 5.54
245 246 1.812571 ACCAGTTTTAATGAGCAGCGG 59.187 47.619 0.00 0.00 0.00 5.52
246 247 3.559238 AACCAGTTTTAATGAGCAGCG 57.441 42.857 0.00 0.00 0.00 5.18
247 248 4.448732 CCAAAACCAGTTTTAATGAGCAGC 59.551 41.667 8.12 0.00 40.45 5.25
248 249 4.990426 CCCAAAACCAGTTTTAATGAGCAG 59.010 41.667 8.12 0.00 40.45 4.24
249 250 4.202305 CCCCAAAACCAGTTTTAATGAGCA 60.202 41.667 8.12 0.00 40.45 4.26
250 251 4.314961 CCCCAAAACCAGTTTTAATGAGC 58.685 43.478 8.12 0.00 40.45 4.26
251 252 4.314961 GCCCCAAAACCAGTTTTAATGAG 58.685 43.478 8.12 0.00 40.45 2.90
252 253 3.243907 CGCCCCAAAACCAGTTTTAATGA 60.244 43.478 8.12 0.00 40.45 2.57
253 254 3.063485 CGCCCCAAAACCAGTTTTAATG 58.937 45.455 8.12 0.00 40.45 1.90
254 255 2.037902 CCGCCCCAAAACCAGTTTTAAT 59.962 45.455 8.12 0.00 40.45 1.40
255 256 1.413077 CCGCCCCAAAACCAGTTTTAA 59.587 47.619 8.12 0.00 40.45 1.52
256 257 1.041437 CCGCCCCAAAACCAGTTTTA 58.959 50.000 8.12 0.00 40.45 1.52
257 258 0.978667 ACCGCCCCAAAACCAGTTTT 60.979 50.000 2.68 2.68 42.91 2.43
258 259 0.978667 AACCGCCCCAAAACCAGTTT 60.979 50.000 0.00 0.00 0.00 2.66
259 260 1.382009 AACCGCCCCAAAACCAGTT 60.382 52.632 0.00 0.00 0.00 3.16
260 261 1.830847 GAACCGCCCCAAAACCAGT 60.831 57.895 0.00 0.00 0.00 4.00
261 262 1.805428 CTGAACCGCCCCAAAACCAG 61.805 60.000 0.00 0.00 0.00 4.00
262 263 1.830408 CTGAACCGCCCCAAAACCA 60.830 57.895 0.00 0.00 0.00 3.67
263 264 1.529713 TCTGAACCGCCCCAAAACC 60.530 57.895 0.00 0.00 0.00 3.27
264 265 1.104577 TGTCTGAACCGCCCCAAAAC 61.105 55.000 0.00 0.00 0.00 2.43
265 266 0.821711 CTGTCTGAACCGCCCCAAAA 60.822 55.000 0.00 0.00 0.00 2.44
266 267 1.228124 CTGTCTGAACCGCCCCAAA 60.228 57.895 0.00 0.00 0.00 3.28
267 268 2.391724 GACTGTCTGAACCGCCCCAA 62.392 60.000 0.00 0.00 0.00 4.12
268 269 2.847234 ACTGTCTGAACCGCCCCA 60.847 61.111 0.00 0.00 0.00 4.96
269 270 1.255667 TAGACTGTCTGAACCGCCCC 61.256 60.000 20.19 0.00 0.00 5.80
270 271 0.606604 TTAGACTGTCTGAACCGCCC 59.393 55.000 20.19 0.00 0.00 6.13
271 272 2.067013 GTTTAGACTGTCTGAACCGCC 58.933 52.381 26.26 8.89 37.11 6.13
272 273 2.750948 TGTTTAGACTGTCTGAACCGC 58.249 47.619 30.54 15.23 40.85 5.68
273 274 5.924475 ATTTGTTTAGACTGTCTGAACCG 57.076 39.130 30.54 0.00 40.85 4.44
274 275 7.606456 TCCATATTTGTTTAGACTGTCTGAACC 59.394 37.037 30.54 18.83 40.85 3.62
275 276 8.547967 TCCATATTTGTTTAGACTGTCTGAAC 57.452 34.615 28.49 28.49 41.61 3.18
278 279 9.823647 ACTATCCATATTTGTTTAGACTGTCTG 57.176 33.333 20.19 0.30 0.00 3.51
289 290 9.125026 GGTCATCTCAAACTATCCATATTTGTT 57.875 33.333 0.00 0.00 35.33 2.83
290 291 7.721399 GGGTCATCTCAAACTATCCATATTTGT 59.279 37.037 0.00 0.00 35.33 2.83
291 292 7.095060 CGGGTCATCTCAAACTATCCATATTTG 60.095 40.741 0.00 0.00 35.15 2.32
292 293 6.936900 CGGGTCATCTCAAACTATCCATATTT 59.063 38.462 0.00 0.00 0.00 1.40
293 294 6.043243 ACGGGTCATCTCAAACTATCCATATT 59.957 38.462 0.00 0.00 0.00 1.28
294 295 5.544176 ACGGGTCATCTCAAACTATCCATAT 59.456 40.000 0.00 0.00 0.00 1.78
295 296 4.899457 ACGGGTCATCTCAAACTATCCATA 59.101 41.667 0.00 0.00 0.00 2.74
296 297 3.711704 ACGGGTCATCTCAAACTATCCAT 59.288 43.478 0.00 0.00 0.00 3.41
297 298 3.104512 ACGGGTCATCTCAAACTATCCA 58.895 45.455 0.00 0.00 0.00 3.41
298 299 3.821421 ACGGGTCATCTCAAACTATCC 57.179 47.619 0.00 0.00 0.00 2.59
299 300 5.978322 GTCTAACGGGTCATCTCAAACTATC 59.022 44.000 0.00 0.00 0.00 2.08
300 301 5.657302 AGTCTAACGGGTCATCTCAAACTAT 59.343 40.000 0.00 0.00 0.00 2.12
301 302 5.014858 AGTCTAACGGGTCATCTCAAACTA 58.985 41.667 0.00 0.00 0.00 2.24
302 303 3.833070 AGTCTAACGGGTCATCTCAAACT 59.167 43.478 0.00 0.00 0.00 2.66
303 304 3.927142 CAGTCTAACGGGTCATCTCAAAC 59.073 47.826 0.00 0.00 0.00 2.93
304 305 3.830178 TCAGTCTAACGGGTCATCTCAAA 59.170 43.478 0.00 0.00 0.00 2.69
305 306 3.427573 TCAGTCTAACGGGTCATCTCAA 58.572 45.455 0.00 0.00 0.00 3.02
306 307 3.081710 TCAGTCTAACGGGTCATCTCA 57.918 47.619 0.00 0.00 0.00 3.27
307 308 4.657436 ATTCAGTCTAACGGGTCATCTC 57.343 45.455 0.00 0.00 0.00 2.75
308 309 5.422214 AAATTCAGTCTAACGGGTCATCT 57.578 39.130 0.00 0.00 0.00 2.90
309 310 6.496338 AAAAATTCAGTCTAACGGGTCATC 57.504 37.500 0.00 0.00 0.00 2.92
334 335 4.046938 TCATTTGTCTGAGCGGATAGAC 57.953 45.455 0.00 0.00 42.77 2.59
335 336 3.068732 CCTCATTTGTCTGAGCGGATAGA 59.931 47.826 0.00 0.00 41.12 1.98
336 337 3.388308 CCTCATTTGTCTGAGCGGATAG 58.612 50.000 0.00 0.00 41.12 2.08
337 338 2.483714 GCCTCATTTGTCTGAGCGGATA 60.484 50.000 0.00 0.00 41.12 2.59
338 339 1.745141 GCCTCATTTGTCTGAGCGGAT 60.745 52.381 0.00 0.00 41.12 4.18
339 340 0.391661 GCCTCATTTGTCTGAGCGGA 60.392 55.000 0.00 0.00 41.12 5.54
340 341 1.699656 CGCCTCATTTGTCTGAGCGG 61.700 60.000 0.00 0.00 41.12 5.52
341 342 1.712081 CGCCTCATTTGTCTGAGCG 59.288 57.895 0.00 0.00 41.12 5.03
342 343 1.427020 GCGCCTCATTTGTCTGAGC 59.573 57.895 0.00 0.00 41.12 4.26
343 344 1.016130 ACGCGCCTCATTTGTCTGAG 61.016 55.000 5.73 0.00 41.93 3.35
344 345 0.602638 AACGCGCCTCATTTGTCTGA 60.603 50.000 5.73 0.00 0.00 3.27
345 346 0.238289 AAACGCGCCTCATTTGTCTG 59.762 50.000 5.73 0.00 0.00 3.51
346 347 0.238289 CAAACGCGCCTCATTTGTCT 59.762 50.000 5.73 0.00 0.00 3.41
347 348 0.729140 CCAAACGCGCCTCATTTGTC 60.729 55.000 5.73 0.00 32.53 3.18
348 349 1.285641 CCAAACGCGCCTCATTTGT 59.714 52.632 5.73 0.00 32.53 2.83
349 350 1.444212 CCCAAACGCGCCTCATTTG 60.444 57.895 5.73 9.20 33.90 2.32
350 351 1.586154 CTCCCAAACGCGCCTCATTT 61.586 55.000 5.73 0.00 0.00 2.32
351 352 2.033448 TCCCAAACGCGCCTCATT 59.967 55.556 5.73 0.00 0.00 2.57
352 353 2.436646 CTCCCAAACGCGCCTCAT 60.437 61.111 5.73 0.00 0.00 2.90
353 354 4.697756 CCTCCCAAACGCGCCTCA 62.698 66.667 5.73 0.00 0.00 3.86
366 367 2.922234 CATCTCCAAGGGCCCTCC 59.078 66.667 28.84 0.00 0.00 4.30
367 368 1.056700 TAGCATCTCCAAGGGCCCTC 61.057 60.000 28.84 10.16 0.00 4.30
368 369 1.004758 TAGCATCTCCAAGGGCCCT 59.995 57.895 22.28 22.28 0.00 5.19
369 370 1.149401 GTAGCATCTCCAAGGGCCC 59.851 63.158 16.46 16.46 0.00 5.80
370 371 1.227674 CGTAGCATCTCCAAGGGCC 60.228 63.158 0.00 0.00 0.00 5.80
371 372 0.249657 CTCGTAGCATCTCCAAGGGC 60.250 60.000 0.00 0.00 0.00 5.19
372 373 0.390860 CCTCGTAGCATCTCCAAGGG 59.609 60.000 0.00 0.00 0.00 3.95
373 374 0.249657 GCCTCGTAGCATCTCCAAGG 60.250 60.000 0.00 0.00 0.00 3.61
374 375 0.249657 GGCCTCGTAGCATCTCCAAG 60.250 60.000 0.00 0.00 0.00 3.61
375 376 1.823295 GGCCTCGTAGCATCTCCAA 59.177 57.895 0.00 0.00 0.00 3.53
376 377 2.490148 CGGCCTCGTAGCATCTCCA 61.490 63.158 0.00 0.00 0.00 3.86
377 378 2.336809 CGGCCTCGTAGCATCTCC 59.663 66.667 0.00 0.00 0.00 3.71
387 388 0.242825 TTGTAGTTCTCACGGCCTCG 59.757 55.000 0.00 0.00 43.02 4.63
388 389 2.338500 CTTTGTAGTTCTCACGGCCTC 58.662 52.381 0.00 0.00 0.00 4.70
389 390 1.002087 CCTTTGTAGTTCTCACGGCCT 59.998 52.381 0.00 0.00 0.00 5.19
390 391 1.439679 CCTTTGTAGTTCTCACGGCC 58.560 55.000 0.00 0.00 0.00 6.13
391 392 0.796927 GCCTTTGTAGTTCTCACGGC 59.203 55.000 0.00 0.00 0.00 5.68
392 393 2.457366 AGCCTTTGTAGTTCTCACGG 57.543 50.000 0.00 0.00 0.00 4.94
393 394 3.807622 TCAAAGCCTTTGTAGTTCTCACG 59.192 43.478 16.33 0.00 41.36 4.35
394 395 5.297029 ACTTCAAAGCCTTTGTAGTTCTCAC 59.703 40.000 19.87 0.00 45.21 3.51
395 396 5.296780 CACTTCAAAGCCTTTGTAGTTCTCA 59.703 40.000 22.15 0.00 45.21 3.27
396 397 5.278022 CCACTTCAAAGCCTTTGTAGTTCTC 60.278 44.000 22.15 0.00 45.21 2.87
397 398 4.580580 CCACTTCAAAGCCTTTGTAGTTCT 59.419 41.667 22.15 3.75 45.21 3.01
398 399 4.578928 TCCACTTCAAAGCCTTTGTAGTTC 59.421 41.667 22.15 0.00 45.21 3.01
399 400 4.532834 TCCACTTCAAAGCCTTTGTAGTT 58.467 39.130 22.15 9.06 45.21 2.24
401 402 4.389374 TCTCCACTTCAAAGCCTTTGTAG 58.611 43.478 18.73 18.73 41.88 2.74
402 403 4.431416 TCTCCACTTCAAAGCCTTTGTA 57.569 40.909 16.33 6.70 41.36 2.41
403 404 3.297134 TCTCCACTTCAAAGCCTTTGT 57.703 42.857 16.33 0.00 41.36 2.83
404 405 3.633986 ACTTCTCCACTTCAAAGCCTTTG 59.366 43.478 10.99 10.99 41.96 2.77
405 406 3.903467 ACTTCTCCACTTCAAAGCCTTT 58.097 40.909 0.00 0.00 0.00 3.11
406 407 3.584733 ACTTCTCCACTTCAAAGCCTT 57.415 42.857 0.00 0.00 0.00 4.35
407 408 3.648545 AGTACTTCTCCACTTCAAAGCCT 59.351 43.478 0.00 0.00 0.00 4.58
408 409 4.009370 AGTACTTCTCCACTTCAAAGCC 57.991 45.455 0.00 0.00 0.00 4.35
409 410 8.950208 AATATAGTACTTCTCCACTTCAAAGC 57.050 34.615 0.00 0.00 0.00 3.51
440 441 6.670695 AACAAGGCAGGTCTGATTATTTTT 57.329 33.333 1.65 0.00 0.00 1.94
441 442 6.494835 AGAAACAAGGCAGGTCTGATTATTTT 59.505 34.615 1.65 0.34 0.00 1.82
442 443 6.012745 AGAAACAAGGCAGGTCTGATTATTT 58.987 36.000 1.65 0.00 0.00 1.40
443 444 5.574188 AGAAACAAGGCAGGTCTGATTATT 58.426 37.500 1.65 0.00 0.00 1.40
444 445 5.184892 AGAAACAAGGCAGGTCTGATTAT 57.815 39.130 1.65 0.00 0.00 1.28
445 446 4.640771 AGAAACAAGGCAGGTCTGATTA 57.359 40.909 1.65 0.00 0.00 1.75
446 447 3.515602 AGAAACAAGGCAGGTCTGATT 57.484 42.857 1.65 0.00 0.00 2.57
447 448 3.152341 CAAGAAACAAGGCAGGTCTGAT 58.848 45.455 1.65 0.00 0.00 2.90
448 449 2.172505 TCAAGAAACAAGGCAGGTCTGA 59.827 45.455 1.65 0.00 0.00 3.27
449 450 2.575532 TCAAGAAACAAGGCAGGTCTG 58.424 47.619 0.00 0.00 0.00 3.51
450 451 3.297134 TTCAAGAAACAAGGCAGGTCT 57.703 42.857 0.00 0.00 0.00 3.85
451 452 4.385358 TTTTCAAGAAACAAGGCAGGTC 57.615 40.909 0.00 0.00 0.00 3.85
452 453 4.817318 TTTTTCAAGAAACAAGGCAGGT 57.183 36.364 0.00 0.00 0.00 4.00
473 474 9.625747 ATTGGTGATTTGAAAGGTTGTATTTTT 57.374 25.926 0.00 0.00 0.00 1.94
474 475 9.271828 GATTGGTGATTTGAAAGGTTGTATTTT 57.728 29.630 0.00 0.00 0.00 1.82
475 476 7.598493 CGATTGGTGATTTGAAAGGTTGTATTT 59.402 33.333 0.00 0.00 0.00 1.40
476 477 7.090173 CGATTGGTGATTTGAAAGGTTGTATT 58.910 34.615 0.00 0.00 0.00 1.89
477 478 6.620678 CGATTGGTGATTTGAAAGGTTGTAT 58.379 36.000 0.00 0.00 0.00 2.29
478 479 5.563867 GCGATTGGTGATTTGAAAGGTTGTA 60.564 40.000 0.00 0.00 0.00 2.41
479 480 4.795962 GCGATTGGTGATTTGAAAGGTTGT 60.796 41.667 0.00 0.00 0.00 3.32
480 481 3.674753 GCGATTGGTGATTTGAAAGGTTG 59.325 43.478 0.00 0.00 0.00 3.77
481 482 3.573967 AGCGATTGGTGATTTGAAAGGTT 59.426 39.130 0.00 0.00 0.00 3.50
482 483 3.157087 AGCGATTGGTGATTTGAAAGGT 58.843 40.909 0.00 0.00 0.00 3.50
483 484 3.855689 AGCGATTGGTGATTTGAAAGG 57.144 42.857 0.00 0.00 0.00 3.11
484 485 5.117592 GTCAAAGCGATTGGTGATTTGAAAG 59.882 40.000 7.82 0.00 40.44 2.62
485 486 4.981674 GTCAAAGCGATTGGTGATTTGAAA 59.018 37.500 7.82 0.00 40.44 2.69
486 487 4.278170 AGTCAAAGCGATTGGTGATTTGAA 59.722 37.500 7.82 0.00 40.44 2.69
487 488 3.820467 AGTCAAAGCGATTGGTGATTTGA 59.180 39.130 2.64 2.64 39.62 2.69
488 489 4.164822 AGTCAAAGCGATTGGTGATTTG 57.835 40.909 5.60 0.00 39.62 2.32
489 490 4.853924 AAGTCAAAGCGATTGGTGATTT 57.146 36.364 5.60 0.00 39.62 2.17
490 491 4.037923 ACAAAGTCAAAGCGATTGGTGATT 59.962 37.500 5.60 0.00 39.62 2.57
491 492 3.569701 ACAAAGTCAAAGCGATTGGTGAT 59.430 39.130 5.60 0.00 39.62 3.06
492 493 2.948979 ACAAAGTCAAAGCGATTGGTGA 59.051 40.909 5.60 0.00 39.62 4.02
493 494 3.354089 ACAAAGTCAAAGCGATTGGTG 57.646 42.857 5.60 0.00 39.62 4.17
494 495 5.508200 TTTACAAAGTCAAAGCGATTGGT 57.492 34.783 5.60 0.00 39.62 3.67
495 496 5.920273 ACATTTACAAAGTCAAAGCGATTGG 59.080 36.000 5.60 0.00 39.62 3.16
496 497 6.991485 ACATTTACAAAGTCAAAGCGATTG 57.009 33.333 0.00 0.00 40.58 2.67
497 498 7.326063 GCTTACATTTACAAAGTCAAAGCGATT 59.674 33.333 0.00 0.00 0.00 3.34
538 539 1.423395 GTGCTCTTCTTCGTGACCAG 58.577 55.000 0.00 0.00 0.00 4.00
552 553 3.125316 TGTACAGTAAACCAACGTGCTC 58.875 45.455 0.00 0.00 0.00 4.26
572 573 3.056393 TCGGGGTGTCATACTGTTTACTG 60.056 47.826 0.00 0.00 0.00 2.74
574 575 3.256558 GTCGGGGTGTCATACTGTTTAC 58.743 50.000 0.00 0.00 0.00 2.01
575 576 2.094597 CGTCGGGGTGTCATACTGTTTA 60.095 50.000 0.00 0.00 0.00 2.01
577 578 0.245539 CGTCGGGGTGTCATACTGTT 59.754 55.000 0.00 0.00 0.00 3.16
578 579 0.609957 TCGTCGGGGTGTCATACTGT 60.610 55.000 0.00 0.00 0.00 3.55
579 580 0.528924 TTCGTCGGGGTGTCATACTG 59.471 55.000 0.00 0.00 0.00 2.74
580 581 1.203994 CTTTCGTCGGGGTGTCATACT 59.796 52.381 0.00 0.00 0.00 2.12
581 582 1.636988 CTTTCGTCGGGGTGTCATAC 58.363 55.000 0.00 0.00 0.00 2.39
582 583 0.108520 GCTTTCGTCGGGGTGTCATA 60.109 55.000 0.00 0.00 0.00 2.15
583 584 1.375523 GCTTTCGTCGGGGTGTCAT 60.376 57.895 0.00 0.00 0.00 3.06
584 585 2.029964 GCTTTCGTCGGGGTGTCA 59.970 61.111 0.00 0.00 0.00 3.58
585 586 2.726822 AAGGCTTTCGTCGGGGTGTC 62.727 60.000 0.00 0.00 0.00 3.67
586 587 2.333701 AAAGGCTTTCGTCGGGGTGT 62.334 55.000 6.68 0.00 0.00 4.16
587 588 1.599797 AAAGGCTTTCGTCGGGGTG 60.600 57.895 6.68 0.00 0.00 4.61
588 589 1.599797 CAAAGGCTTTCGTCGGGGT 60.600 57.895 10.08 0.00 0.00 4.95
589 590 1.302192 TCAAAGGCTTTCGTCGGGG 60.302 57.895 10.08 0.00 0.00 5.73
590 591 0.602905 AGTCAAAGGCTTTCGTCGGG 60.603 55.000 10.08 0.00 0.00 5.14
591 592 2.074547 TAGTCAAAGGCTTTCGTCGG 57.925 50.000 10.08 0.00 0.00 4.79
592 593 2.159827 GCTTAGTCAAAGGCTTTCGTCG 60.160 50.000 10.08 0.00 35.58 5.12
593 594 3.457198 GCTTAGTCAAAGGCTTTCGTC 57.543 47.619 10.08 3.67 35.58 4.20
664 681 4.096681 TGCATCAAGGAGAAGAGGTAGAA 58.903 43.478 0.00 0.00 0.00 2.10
666 683 4.502950 GGATGCATCAAGGAGAAGAGGTAG 60.503 50.000 27.25 0.00 0.00 3.18
684 749 2.359850 TGCCTGGTCAACGGATGC 60.360 61.111 0.00 0.00 0.00 3.91
712 777 1.573829 GCGGAAAACATCGTGCTGGA 61.574 55.000 0.00 0.00 0.00 3.86
757 822 4.036262 TCAGCACTAAGAATGCACGTTTTT 59.964 37.500 0.00 0.00 45.92 1.94
899 964 3.403038 ACCTGTGAAGATGGAAAACGAG 58.597 45.455 0.00 0.00 0.00 4.18
924 990 5.468592 AGCGATCTCAGAATATAACAGCAG 58.531 41.667 0.00 0.00 0.00 4.24
938 1004 0.250234 CAAGTCCCCAAGCGATCTCA 59.750 55.000 0.00 0.00 0.00 3.27
988 1058 5.751586 TGAATTTACCATGGGAGAGGTTAC 58.248 41.667 18.09 0.00 39.31 2.50
1021 1091 4.929808 TGAACGAACTATGAAAGAAGAGCC 59.070 41.667 0.00 0.00 0.00 4.70
1033 1103 3.247442 TCAACGCGAATGAACGAACTAT 58.753 40.909 15.93 0.00 35.09 2.12
1040 1110 2.723658 TGCAAAATCAACGCGAATGAAC 59.276 40.909 15.93 6.59 0.00 3.18
1048 1118 5.529014 AATTTACCATGCAAAATCAACGC 57.471 34.783 0.00 0.00 0.00 4.84
1054 1124 6.042143 CGGAGCTAAATTTACCATGCAAAAT 58.958 36.000 9.15 0.00 0.00 1.82
1058 1128 3.876914 CTCGGAGCTAAATTTACCATGCA 59.123 43.478 9.15 0.00 0.00 3.96
1059 1129 3.877508 ACTCGGAGCTAAATTTACCATGC 59.122 43.478 4.58 0.00 0.00 4.06
1186 1275 5.222631 CCCAAAGTTGAAGTTTGCATCTAC 58.777 41.667 17.71 0.00 37.23 2.59
1261 1351 1.661509 GCTGTTGTTTCTTGGGCGC 60.662 57.895 0.00 0.00 0.00 6.53
1291 1381 2.092968 TGGTACCATGGCAGATGAAGAC 60.093 50.000 11.60 0.00 0.00 3.01
1383 1489 4.406003 TCTCCTCCATAGCCTACAAGTTTC 59.594 45.833 0.00 0.00 0.00 2.78
1430 1536 5.799681 ACGCTGAAGAGTAGAAGTAGTAC 57.200 43.478 0.00 0.00 0.00 2.73
1458 1564 3.036633 CGTTCTGAATCGATGGACGTAG 58.963 50.000 0.00 0.00 43.13 3.51
1460 1566 1.471287 TCGTTCTGAATCGATGGACGT 59.529 47.619 13.04 0.00 43.13 4.34
1461 1567 2.188837 TCGTTCTGAATCGATGGACG 57.811 50.000 8.38 8.38 44.09 4.79
1516 1638 1.616374 TGTCTGAACATGCGTGGAGTA 59.384 47.619 11.36 0.00 0.00 2.59
1574 1696 0.694444 GGCCCTCTTGGTCTATCCCA 60.694 60.000 0.00 0.00 35.10 4.37
1635 1757 0.109086 CAGTCCTTGACGATGTCGCT 60.109 55.000 1.77 0.00 44.43 4.93
1664 1786 3.069016 TCTTACCACAGACGCTCTTGAAA 59.931 43.478 0.00 0.00 0.00 2.69
1679 1801 4.345257 AGCTCTGTTCTTCTGTTCTTACCA 59.655 41.667 0.00 0.00 0.00 3.25
1926 2054 1.000896 GTGGACCTTGACCATGGGG 60.001 63.158 18.09 10.08 39.69 4.96
1943 2071 4.217118 GGCATGTTGATCAAGTCAAGAAGT 59.783 41.667 8.80 0.00 46.99 3.01
1959 2087 3.209410 GAAGCTACTAGCATGGCATGTT 58.791 45.455 26.94 23.81 45.56 2.71
1997 2125 4.154918 GGACAATTTGACAGGCTACAAGAG 59.845 45.833 2.79 4.46 0.00 2.85
1998 2126 4.072131 GGACAATTTGACAGGCTACAAGA 58.928 43.478 2.79 1.00 0.00 3.02
1999 2127 4.074970 AGGACAATTTGACAGGCTACAAG 58.925 43.478 2.79 0.29 0.00 3.16
2005 2133 6.454795 TGAATTTTAGGACAATTTGACAGGC 58.545 36.000 2.79 0.00 0.00 4.85
2023 2151 8.877779 CGATCTTCAGAAGACATAACTGAATTT 58.122 33.333 15.41 0.00 45.34 1.82
2029 2157 5.126222 TCAGCGATCTTCAGAAGACATAACT 59.874 40.000 15.41 6.17 41.01 2.24
2038 2207 5.760253 AGAAAAAGTTCAGCGATCTTCAGAA 59.240 36.000 0.00 0.00 36.09 3.02
2127 2297 1.148157 CGACGGCGCAGATCATCTTT 61.148 55.000 16.26 0.00 0.00 2.52
2193 2363 2.905415 TGAACTGGGGATCTTTGCAT 57.095 45.000 0.00 0.00 0.00 3.96
2232 2402 3.133003 CAGGTCAATGGTTCTCCGATAGT 59.867 47.826 0.00 0.00 36.30 2.12
2233 2403 3.384789 TCAGGTCAATGGTTCTCCGATAG 59.615 47.826 0.00 0.00 36.30 2.08
2234 2404 3.132289 GTCAGGTCAATGGTTCTCCGATA 59.868 47.826 0.00 0.00 36.30 2.92
2235 2405 2.093447 GTCAGGTCAATGGTTCTCCGAT 60.093 50.000 0.00 0.00 36.30 4.18
2236 2406 1.275291 GTCAGGTCAATGGTTCTCCGA 59.725 52.381 0.00 0.00 36.30 4.55
2277 2451 6.428771 TCTTCCTAACGTTGGAAAAACTATGG 59.571 38.462 23.36 14.22 42.29 2.74
2288 2462 5.051816 TGTAGTGTTTCTTCCTAACGTTGG 58.948 41.667 11.99 8.08 0.00 3.77
2399 2607 9.461312 ACAAAGCATTTATACATTCTACCAGAA 57.539 29.630 0.00 0.00 35.03 3.02
2400 2608 8.892723 CACAAAGCATTTATACATTCTACCAGA 58.107 33.333 0.00 0.00 35.03 3.86
2401 2609 7.645340 GCACAAAGCATTTATACATTCTACCAG 59.355 37.037 0.00 0.00 44.79 4.00
2402 2610 7.479980 GCACAAAGCATTTATACATTCTACCA 58.520 34.615 0.00 0.00 44.79 3.25
2403 2611 7.914537 GCACAAAGCATTTATACATTCTACC 57.085 36.000 0.00 0.00 44.79 3.18
2581 3015 8.783093 CAACATTCTAGTATCAAGGTTGTTGAA 58.217 33.333 9.87 0.00 38.73 2.69
2651 3085 6.754193 AGATTTTAAAATCCCGCAAAGTGAA 58.246 32.000 29.00 0.00 44.55 3.18
2723 3157 3.844211 AGACCTGGTAGAAAATGCCTACA 59.156 43.478 0.00 0.00 38.51 2.74
2738 3172 7.389053 GGATTCTTAGCATTATGTAAGACCTGG 59.611 40.741 13.00 0.00 35.47 4.45
2833 3267 1.009675 GGGATTTGCGCGTATGCTG 60.010 57.895 8.43 0.00 39.65 4.41
3124 3558 1.891919 GTTCGTGGCCTGTCTGCAA 60.892 57.895 3.32 0.00 0.00 4.08
3780 4738 9.696917 ACATCATTTTTGAAATACCTTTCTCAC 57.303 29.630 0.41 0.00 41.18 3.51
3868 4826 3.897239 TCACGGAAGGCATTATTTGGAT 58.103 40.909 0.00 0.00 0.00 3.41
3911 4869 1.750778 CATGGGTTGTGCCTGGTAATC 59.249 52.381 0.00 0.00 37.43 1.75
4010 4976 0.737219 GATGTCCATGCCAGAGTTGC 59.263 55.000 0.00 0.00 0.00 4.17
4019 4985 2.410469 GCTTGGCGATGTCCATGC 59.590 61.111 5.17 5.17 45.74 4.06
4269 5277 1.812571 GCACATGGTTGATCGGTTTCT 59.187 47.619 0.00 0.00 0.00 2.52
4315 5336 3.119424 TGATAACGAACATGAGGCGTGTA 60.119 43.478 0.00 2.76 38.39 2.90
4335 5356 1.228094 TTGCCTGGATGCACGTTGA 60.228 52.632 0.00 0.00 41.88 3.18
4355 5376 1.611673 CGTGTTCTCCCTGCCAATTCT 60.612 52.381 0.00 0.00 0.00 2.40
4395 5416 2.095415 CGTAACGTGAGACATGGTGAGA 60.095 50.000 0.00 0.00 0.00 3.27
4520 5541 1.138247 CGTGGTAGCGGTGTAGGAC 59.862 63.158 0.00 0.00 0.00 3.85
4521 5542 1.002257 TCGTGGTAGCGGTGTAGGA 60.002 57.895 0.00 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.