Multiple sequence alignment - TraesCS3D01G348800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G348800 chr3D 100.000 5486 0 0 1 5486 460423282 460417797 0.000000e+00 10131.0
1 TraesCS3D01G348800 chr3A 93.181 3109 135 29 22 3093 602690685 602687617 0.000000e+00 4495.0
2 TraesCS3D01G348800 chr3A 96.667 2130 47 11 3183 5298 602687544 602685425 0.000000e+00 3518.0
3 TraesCS3D01G348800 chr3A 94.245 139 6 2 5303 5440 644809118 644809255 1.550000e-50 211.0
4 TraesCS3D01G348800 chr3B 95.109 2147 71 15 3183 5298 610499034 610496891 0.000000e+00 3352.0
5 TraesCS3D01G348800 chr3B 91.193 2112 118 32 392 2470 610501937 610499861 0.000000e+00 2808.0
6 TraesCS3D01G348800 chr3B 96.388 609 18 2 2469 3073 610499747 610499139 0.000000e+00 1000.0
7 TraesCS3D01G348800 chrUn 100.000 398 0 0 4046 4443 478989335 478989732 0.000000e+00 736.0
8 TraesCS3D01G348800 chr7A 81.778 911 106 29 1458 2333 269092832 269091947 0.000000e+00 708.0
9 TraesCS3D01G348800 chr7A 85.714 77 5 2 3108 3179 561594648 561594573 5.890000e-10 76.8
10 TraesCS3D01G348800 chr4A 81.236 906 110 29 1461 2331 353126198 353125318 0.000000e+00 676.0
11 TraesCS3D01G348800 chr4A 95.522 134 6 0 5311 5444 719163905 719164038 1.200000e-51 215.0
12 TraesCS3D01G348800 chr4B 96.154 130 5 0 5311 5440 467275980 467276109 4.300000e-51 213.0
13 TraesCS3D01G348800 chr4B 94.161 137 8 0 5304 5440 660419533 660419669 5.570000e-50 209.0
14 TraesCS3D01G348800 chr4B 94.161 137 8 0 5304 5440 660448841 660448977 5.570000e-50 209.0
15 TraesCS3D01G348800 chr4B 97.561 41 1 0 3141 3181 595276645 595276685 2.740000e-08 71.3
16 TraesCS3D01G348800 chr5A 93.617 141 7 2 5314 5453 662382627 662382766 5.570000e-50 209.0
17 TraesCS3D01G348800 chr5A 100.000 42 0 0 3065 3106 707806578 707806537 1.640000e-10 78.7
18 TraesCS3D01G348800 chr6B 94.203 138 4 4 5308 5444 159156793 159156927 2.000000e-49 207.0
19 TraesCS3D01G348800 chr6B 91.781 73 4 1 3109 3181 622735251 622735321 3.500000e-17 100.0
20 TraesCS3D01G348800 chr6B 87.500 88 7 3 3108 3194 720983078 720983162 1.260000e-16 99.0
21 TraesCS3D01G348800 chr2D 92.466 146 7 4 5304 5447 622315648 622315791 7.200000e-49 206.0
22 TraesCS3D01G348800 chr2D 100.000 42 0 0 3065 3106 535105569 535105610 1.640000e-10 78.7
23 TraesCS3D01G348800 chr2B 93.525 139 7 2 5314 5452 648808658 648808522 7.200000e-49 206.0
24 TraesCS3D01G348800 chr7B 87.500 88 7 3 3108 3194 586988005 586987921 1.260000e-16 99.0
25 TraesCS3D01G348800 chr7B 83.750 80 7 2 3108 3181 102228092 102228171 2.740000e-08 71.3
26 TraesCS3D01G348800 chr1B 86.170 94 5 2 3061 3146 242241038 242241131 1.630000e-15 95.3
27 TraesCS3D01G348800 chr1B 95.122 41 2 0 3141 3181 223800080 223800120 1.280000e-06 65.8
28 TraesCS3D01G348800 chr6D 100.000 42 0 0 3065 3106 419274693 419274652 1.640000e-10 78.7
29 TraesCS3D01G348800 chr1D 97.778 45 1 0 3065 3109 11716283 11716327 1.640000e-10 78.7
30 TraesCS3D01G348800 chr1D 97.727 44 1 0 3061 3104 184473460 184473417 5.890000e-10 76.8
31 TraesCS3D01G348800 chr1D 83.133 83 3 1 3110 3181 154021234 154021316 1.280000e-06 65.8
32 TraesCS3D01G348800 chr1A 100.000 42 0 0 3065 3106 206793778 206793737 1.640000e-10 78.7
33 TraesCS3D01G348800 chr1A 95.652 46 2 0 3061 3106 175176221 175176266 2.120000e-09 75.0
34 TraesCS3D01G348800 chr1A 83.529 85 3 2 3108 3181 206793767 206793683 9.860000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G348800 chr3D 460417797 460423282 5485 True 10131.000000 10131 100.000 1 5486 1 chr3D.!!$R1 5485
1 TraesCS3D01G348800 chr3A 602685425 602690685 5260 True 4006.500000 4495 94.924 22 5298 2 chr3A.!!$R1 5276
2 TraesCS3D01G348800 chr3B 610496891 610501937 5046 True 2386.666667 3352 94.230 392 5298 3 chr3B.!!$R1 4906
3 TraesCS3D01G348800 chr7A 269091947 269092832 885 True 708.000000 708 81.778 1458 2333 1 chr7A.!!$R1 875
4 TraesCS3D01G348800 chr4A 353125318 353126198 880 True 676.000000 676 81.236 1461 2331 1 chr4A.!!$R1 870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.108138 AGCCGTAGCATCAAGACCAC 60.108 55.000 0.00 0.0 43.56 4.16 F
1045 1084 0.036010 GCAGCAGGCTCTACTGGAAA 60.036 55.000 9.90 0.0 38.90 3.13 F
1079 1118 0.170339 GGAATTCGGACGCCCTTTTG 59.830 55.000 0.00 0.0 0.00 2.44 F
1117 1156 0.183731 GGAGGAGCGGAATTGGGATT 59.816 55.000 0.00 0.0 0.00 3.01 F
1153 1192 0.243907 GTGAGGCTTCGCTGTACTGA 59.756 55.000 1.52 0.0 0.00 3.41 F
1154 1193 1.134965 GTGAGGCTTCGCTGTACTGAT 60.135 52.381 1.52 0.0 0.00 2.90 F
1155 1194 1.550524 TGAGGCTTCGCTGTACTGATT 59.449 47.619 3.61 0.0 0.00 2.57 F
1892 1958 1.558741 ATTTTGCATTGCCGCATACG 58.441 45.000 6.12 0.0 42.62 3.06 F
3136 3345 1.100510 ATTGTCGCCGCTCTAGTACA 58.899 50.000 0.00 0.0 0.00 2.90 F
4005 4249 2.033299 TGCTGTGCTTTTTGCTACTGTC 59.967 45.455 0.00 0.0 43.37 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1122 1161 0.032017 AGCCTCACGGTCCTAGGAAT 60.032 55.000 14.65 0.00 31.64 3.01 R
2594 2800 0.107945 GTCCCCTTGTAGCTGCTGAG 60.108 60.000 13.43 7.42 0.00 3.35 R
2699 2905 1.004560 TCCCTGTCGAGCAGCAAAG 60.005 57.895 8.85 0.00 43.71 2.77 R
3116 3325 1.475280 TGTACTAGAGCGGCGACAATT 59.525 47.619 12.98 0.00 0.00 2.32 R
3119 3328 0.169672 GTTGTACTAGAGCGGCGACA 59.830 55.000 12.98 0.00 0.00 4.35 R
3120 3329 0.450983 AGTTGTACTAGAGCGGCGAC 59.549 55.000 12.98 3.29 0.00 5.19 R
3121 3330 1.171308 AAGTTGTACTAGAGCGGCGA 58.829 50.000 12.98 0.00 0.00 5.54 R
3831 4075 0.962489 CTGTCACTGTCTTCCGGAGT 59.038 55.000 3.34 0.00 0.00 3.85 R
4044 4288 3.559238 ACAATCGCAACTCCATTGTTC 57.441 42.857 0.00 0.00 37.44 3.18 R
5311 5585 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.343758 TGCCAGACGAGCTTCACC 59.656 61.111 0.00 0.00 0.00 4.02
18 19 2.435059 GCCAGACGAGCTTCACCC 60.435 66.667 0.00 0.00 0.00 4.61
19 20 2.125912 CCAGACGAGCTTCACCCG 60.126 66.667 0.00 0.00 0.00 5.28
20 21 2.651361 CAGACGAGCTTCACCCGT 59.349 61.111 0.00 0.00 39.41 5.28
22 23 2.504244 GACGAGCTTCACCCGTCG 60.504 66.667 8.85 0.00 42.24 5.12
23 24 3.966026 GACGAGCTTCACCCGTCGG 62.966 68.421 3.60 3.60 42.24 4.79
25 26 4.070552 GAGCTTCACCCGTCGGCT 62.071 66.667 5.50 0.00 35.86 5.52
26 27 3.591254 GAGCTTCACCCGTCGGCTT 62.591 63.158 5.50 0.00 33.13 4.35
27 28 2.668550 GCTTCACCCGTCGGCTTT 60.669 61.111 5.50 0.00 0.00 3.51
28 29 2.677979 GCTTCACCCGTCGGCTTTC 61.678 63.158 5.50 0.00 0.00 2.62
33 34 0.736325 CACCCGTCGGCTTTCTACAG 60.736 60.000 5.50 0.00 0.00 2.74
56 57 0.951558 CGACAAGGTGGGTGGAAAAG 59.048 55.000 0.00 0.00 0.00 2.27
58 59 0.930726 ACAAGGTGGGTGGAAAAGGA 59.069 50.000 0.00 0.00 0.00 3.36
68 69 0.690762 TGGAAAAGGAAGAGACGGGG 59.309 55.000 0.00 0.00 0.00 5.73
79 80 4.547367 GACGGGGCAGCGGCTAAT 62.547 66.667 9.17 0.00 40.87 1.73
117 118 1.925847 GCGTTTCTCATCTGAGCAGAG 59.074 52.381 6.34 0.00 41.33 3.35
131 132 6.360618 TCTGAGCAGAGAATCATCTACACTA 58.639 40.000 0.00 0.00 37.82 2.74
192 193 4.753877 TGCTCCGACGCTCGTTCG 62.754 66.667 0.00 2.31 38.40 3.95
211 212 0.375106 GCAAGCCGTAGCATCAAGAC 59.625 55.000 0.00 0.00 43.56 3.01
212 213 1.009829 CAAGCCGTAGCATCAAGACC 58.990 55.000 0.00 0.00 43.56 3.85
213 214 0.613260 AAGCCGTAGCATCAAGACCA 59.387 50.000 0.00 0.00 43.56 4.02
214 215 0.108138 AGCCGTAGCATCAAGACCAC 60.108 55.000 0.00 0.00 43.56 4.16
215 216 1.090052 GCCGTAGCATCAAGACCACC 61.090 60.000 0.00 0.00 39.53 4.61
231 239 3.588210 CCACCGGGTCCCTTTTATTAT 57.412 47.619 6.32 0.00 0.00 1.28
255 263 2.788786 GCACTTTGTTTCGTTGTCATGG 59.211 45.455 0.00 0.00 0.00 3.66
256 264 3.488384 GCACTTTGTTTCGTTGTCATGGA 60.488 43.478 0.00 0.00 0.00 3.41
257 265 4.667262 CACTTTGTTTCGTTGTCATGGAA 58.333 39.130 0.00 0.00 0.00 3.53
260 268 6.255453 CACTTTGTTTCGTTGTCATGGAAAAT 59.745 34.615 0.00 0.00 32.08 1.82
262 270 7.976734 ACTTTGTTTCGTTGTCATGGAAAATAA 59.023 29.630 0.00 0.00 32.08 1.40
329 339 0.601558 TTCTTCTCGTCCACCTTCCG 59.398 55.000 0.00 0.00 0.00 4.30
356 366 0.473755 TTCCATGTCACCAGCACACT 59.526 50.000 0.00 0.00 0.00 3.55
380 390 1.296056 GACAACGAACATCCCACGGG 61.296 60.000 0.00 0.00 0.00 5.28
389 399 2.524044 TCCCACGGGACACAGAGA 59.476 61.111 0.00 0.00 39.76 3.10
390 400 1.078528 TCCCACGGGACACAGAGAT 59.921 57.895 0.00 0.00 39.76 2.75
490 500 2.045242 CAGAGCAGCACAGCCCAT 60.045 61.111 0.00 0.00 34.23 4.00
523 533 0.731417 CGTCGTCCACTAATCCTCGT 59.269 55.000 0.00 0.00 0.00 4.18
532 542 2.363680 CACTAATCCTCGTCCATCAGCT 59.636 50.000 0.00 0.00 0.00 4.24
540 550 1.016130 CGTCCATCAGCTCACACCAC 61.016 60.000 0.00 0.00 0.00 4.16
541 551 0.322975 GTCCATCAGCTCACACCACT 59.677 55.000 0.00 0.00 0.00 4.00
544 554 0.612229 CATCAGCTCACACCACTCCT 59.388 55.000 0.00 0.00 0.00 3.69
554 564 5.152623 TCACACCACTCCTAATCAGAAAG 57.847 43.478 0.00 0.00 0.00 2.62
556 566 4.692625 CACACCACTCCTAATCAGAAAGTG 59.307 45.833 0.00 0.00 36.18 3.16
559 569 3.589988 CACTCCTAATCAGAAAGTGCGT 58.410 45.455 0.00 0.00 32.32 5.24
602 614 0.861837 CAATGCTAATCGGTCTCGGC 59.138 55.000 0.00 0.00 36.95 5.54
628 640 1.831652 CGCAGGAGTCTTCCCCACTT 61.832 60.000 0.00 0.00 45.24 3.16
642 654 2.310052 CCCCACTTCCATTCTCCTCTTT 59.690 50.000 0.00 0.00 0.00 2.52
1034 1073 3.123620 CGAAGGTGAGCAGCAGGC 61.124 66.667 0.00 0.00 45.30 4.85
1043 1082 3.303189 GCAGCAGGCTCTACTGGA 58.697 61.111 9.90 0.00 38.90 3.86
1044 1083 1.599047 GCAGCAGGCTCTACTGGAA 59.401 57.895 9.90 0.00 38.90 3.53
1045 1084 0.036010 GCAGCAGGCTCTACTGGAAA 60.036 55.000 9.90 0.00 38.90 3.13
1049 1088 1.065126 GCAGGCTCTACTGGAAATGGT 60.065 52.381 0.00 0.00 38.90 3.55
1057 1096 0.472471 ACTGGAAATGGTGGTCGTGT 59.528 50.000 0.00 0.00 0.00 4.49
1073 1112 3.087176 GTTCGGAATTCGGACGCC 58.913 61.111 14.66 3.57 37.65 5.68
1074 1113 2.125431 TTCGGAATTCGGACGCCC 60.125 61.111 14.66 0.00 39.77 6.13
1079 1118 0.170339 GGAATTCGGACGCCCTTTTG 59.830 55.000 0.00 0.00 0.00 2.44
1080 1119 0.879090 GAATTCGGACGCCCTTTTGT 59.121 50.000 0.00 0.00 0.00 2.83
1084 1123 1.104630 TCGGACGCCCTTTTGTTTTT 58.895 45.000 0.00 0.00 0.00 1.94
1085 1124 1.202313 TCGGACGCCCTTTTGTTTTTG 60.202 47.619 0.00 0.00 0.00 2.44
1088 1127 3.004171 GGACGCCCTTTTGTTTTTGTTT 58.996 40.909 0.00 0.00 0.00 2.83
1090 1129 3.403968 ACGCCCTTTTGTTTTTGTTTGT 58.596 36.364 0.00 0.00 0.00 2.83
1091 1130 3.815962 ACGCCCTTTTGTTTTTGTTTGTT 59.184 34.783 0.00 0.00 0.00 2.83
1092 1131 4.276183 ACGCCCTTTTGTTTTTGTTTGTTT 59.724 33.333 0.00 0.00 0.00 2.83
1093 1132 4.614702 CGCCCTTTTGTTTTTGTTTGTTTG 59.385 37.500 0.00 0.00 0.00 2.93
1094 1133 5.524284 GCCCTTTTGTTTTTGTTTGTTTGT 58.476 33.333 0.00 0.00 0.00 2.83
1095 1134 5.980116 GCCCTTTTGTTTTTGTTTGTTTGTT 59.020 32.000 0.00 0.00 0.00 2.83
1096 1135 6.477033 GCCCTTTTGTTTTTGTTTGTTTGTTT 59.523 30.769 0.00 0.00 0.00 2.83
1097 1136 7.515841 GCCCTTTTGTTTTTGTTTGTTTGTTTG 60.516 33.333 0.00 0.00 0.00 2.93
1098 1137 7.043125 CCCTTTTGTTTTTGTTTGTTTGTTTGG 60.043 33.333 0.00 0.00 0.00 3.28
1099 1138 7.043125 CCTTTTGTTTTTGTTTGTTTGTTTGGG 60.043 33.333 0.00 0.00 0.00 4.12
1115 1154 2.375345 GGGAGGAGCGGAATTGGGA 61.375 63.158 0.00 0.00 0.00 4.37
1116 1155 1.709994 GGGAGGAGCGGAATTGGGAT 61.710 60.000 0.00 0.00 0.00 3.85
1117 1156 0.183731 GGAGGAGCGGAATTGGGATT 59.816 55.000 0.00 0.00 0.00 3.01
1118 1157 1.598882 GAGGAGCGGAATTGGGATTC 58.401 55.000 0.00 0.00 40.78 2.52
1153 1192 0.243907 GTGAGGCTTCGCTGTACTGA 59.756 55.000 1.52 0.00 0.00 3.41
1154 1193 1.134965 GTGAGGCTTCGCTGTACTGAT 60.135 52.381 1.52 0.00 0.00 2.90
1155 1194 1.550524 TGAGGCTTCGCTGTACTGATT 59.449 47.619 3.61 0.00 0.00 2.57
1156 1195 2.197577 GAGGCTTCGCTGTACTGATTC 58.802 52.381 3.61 0.00 0.00 2.52
1162 1201 4.201724 GCTTCGCTGTACTGATTCGATTTT 60.202 41.667 3.61 0.00 0.00 1.82
1163 1202 4.840401 TCGCTGTACTGATTCGATTTTG 57.160 40.909 3.61 0.00 0.00 2.44
1164 1203 3.062099 TCGCTGTACTGATTCGATTTTGC 59.938 43.478 3.61 0.00 0.00 3.68
1165 1204 3.685058 GCTGTACTGATTCGATTTTGCC 58.315 45.455 3.61 0.00 0.00 4.52
1171 1215 2.323959 TGATTCGATTTTGCCGTTTGC 58.676 42.857 0.00 0.00 41.77 3.68
1640 1684 4.069304 GCGTATCCCTATGGTAAATTGCA 58.931 43.478 0.00 0.00 0.00 4.08
1717 1773 1.933853 CTAGCGCTATGTTTGGTCCAC 59.066 52.381 19.19 0.00 0.00 4.02
1736 1794 3.376234 CCACTATCTGGAAATGTGTGCAG 59.624 47.826 0.00 0.00 43.95 4.41
1798 1857 4.666237 GCTTGGTATAGCTTCTTTTGCAG 58.334 43.478 3.20 0.00 38.15 4.41
1803 1862 6.234920 TGGTATAGCTTCTTTTGCAGTTACA 58.765 36.000 3.20 0.00 0.00 2.41
1806 1865 7.065803 GGTATAGCTTCTTTTGCAGTTACATGA 59.934 37.037 0.00 0.00 0.00 3.07
1809 1868 5.242393 AGCTTCTTTTGCAGTTACATGATGT 59.758 36.000 2.65 2.65 0.00 3.06
1886 1950 4.201940 TGAGTCAGATATTTTGCATTGCCG 60.202 41.667 6.12 0.00 0.00 5.69
1892 1958 1.558741 ATTTTGCATTGCCGCATACG 58.441 45.000 6.12 0.00 42.62 3.06
2020 2089 8.686334 TCATTTTCAAAGGAACATTAGCCTATC 58.314 33.333 0.00 0.00 33.20 2.08
2028 2097 5.044846 AGGAACATTAGCCTATCAGGTGTTT 60.045 40.000 0.00 0.00 37.80 2.83
2104 2173 3.312421 GCTGTTACACTTCAAAGACTGCA 59.688 43.478 0.00 0.00 33.81 4.41
2217 2294 2.956194 TTGCGTGATGGCTGCAAG 59.044 55.556 0.50 0.00 43.13 4.01
2594 2800 3.735591 TGCAAATACTACCCCGCTTATC 58.264 45.455 0.00 0.00 0.00 1.75
2663 2869 5.046448 TGAACAAGATGATTTTGGATTGGGG 60.046 40.000 0.67 0.00 0.00 4.96
2699 2905 7.832503 AGATAATGGCAAAAATGCTTTACAC 57.167 32.000 0.00 0.29 34.73 2.90
2738 2944 5.977129 GGGACATATGGAAATTGTTAAAGCG 59.023 40.000 7.80 0.00 0.00 4.68
2846 3052 4.751600 TGTGATGTTCTTAGAGCACTTGTG 59.248 41.667 0.00 0.00 0.00 3.33
3085 3294 4.966805 ACTACTCCCTCCGATCCAAATTAA 59.033 41.667 0.00 0.00 0.00 1.40
3093 3302 3.942115 TCCGATCCAAATTAATTGTCGCA 59.058 39.130 0.39 0.00 36.64 5.10
3094 3303 4.035091 TCCGATCCAAATTAATTGTCGCAG 59.965 41.667 0.39 0.19 36.64 5.18
3095 3304 3.725740 CGATCCAAATTAATTGTCGCAGC 59.274 43.478 0.39 0.00 37.32 5.25
3096 3305 4.496341 CGATCCAAATTAATTGTCGCAGCT 60.496 41.667 0.39 0.00 37.32 4.24
3097 3306 4.355543 TCCAAATTAATTGTCGCAGCTC 57.644 40.909 0.39 0.00 37.32 4.09
3098 3307 4.009675 TCCAAATTAATTGTCGCAGCTCT 58.990 39.130 0.39 0.00 37.32 4.09
3099 3308 5.182487 TCCAAATTAATTGTCGCAGCTCTA 58.818 37.500 0.39 0.00 37.32 2.43
3100 3309 5.294306 TCCAAATTAATTGTCGCAGCTCTAG 59.706 40.000 0.39 0.00 37.32 2.43
3101 3310 5.065218 CCAAATTAATTGTCGCAGCTCTAGT 59.935 40.000 0.39 0.00 37.32 2.57
3102 3311 6.257849 CCAAATTAATTGTCGCAGCTCTAGTA 59.742 38.462 0.39 0.00 37.32 1.82
3103 3312 6.830114 AATTAATTGTCGCAGCTCTAGTAC 57.170 37.500 0.00 0.00 0.00 2.73
3104 3313 3.868757 AATTGTCGCAGCTCTAGTACA 57.131 42.857 0.00 0.00 0.00 2.90
3107 3316 3.653539 TGTCGCAGCTCTAGTACAAAA 57.346 42.857 0.00 0.00 0.00 2.44
3109 3318 4.174009 TGTCGCAGCTCTAGTACAAAATC 58.826 43.478 0.00 0.00 0.00 2.17
3110 3319 3.552294 GTCGCAGCTCTAGTACAAAATCC 59.448 47.826 0.00 0.00 0.00 3.01
3111 3320 3.194755 TCGCAGCTCTAGTACAAAATCCA 59.805 43.478 0.00 0.00 0.00 3.41
3115 3324 6.403636 CGCAGCTCTAGTACAAAATCCAAATT 60.404 38.462 0.00 0.00 0.00 1.82
3116 3325 7.201609 CGCAGCTCTAGTACAAAATCCAAATTA 60.202 37.037 0.00 0.00 0.00 1.40
3125 3334 6.720012 ACAAAATCCAAATTAATTGTCGCC 57.280 33.333 0.39 0.00 37.32 5.54
3126 3335 5.347364 ACAAAATCCAAATTAATTGTCGCCG 59.653 36.000 0.39 0.00 37.32 6.46
3127 3336 2.553079 TCCAAATTAATTGTCGCCGC 57.447 45.000 0.39 0.00 37.32 6.53
3129 3338 2.096819 TCCAAATTAATTGTCGCCGCTC 59.903 45.455 0.39 0.00 37.32 5.03
3131 3340 3.311322 CCAAATTAATTGTCGCCGCTCTA 59.689 43.478 0.39 0.00 37.32 2.43
3132 3341 4.518217 CAAATTAATTGTCGCCGCTCTAG 58.482 43.478 0.39 0.00 34.16 2.43
3133 3342 2.953466 TTAATTGTCGCCGCTCTAGT 57.047 45.000 0.00 0.00 0.00 2.57
3134 3343 4.579454 ATTAATTGTCGCCGCTCTAGTA 57.421 40.909 0.00 0.00 0.00 1.82
3135 3344 2.205307 AATTGTCGCCGCTCTAGTAC 57.795 50.000 0.00 0.00 0.00 2.73
3136 3345 1.100510 ATTGTCGCCGCTCTAGTACA 58.899 50.000 0.00 0.00 0.00 2.90
3159 3368 2.921634 TTGTACTAGAGCTGCGACAG 57.078 50.000 0.00 2.92 34.12 3.51
3171 3380 3.758554 AGCTGCGACAGTTAATTTGGATT 59.241 39.130 8.32 0.00 33.43 3.01
3175 3384 4.083003 TGCGACAGTTAATTTGGATTGGAC 60.083 41.667 0.00 0.00 0.00 4.02
3215 3452 7.549134 AGTTGAATCAAATCAGCGATGTACTTA 59.451 33.333 0.00 0.00 35.89 2.24
3216 3453 8.338259 GTTGAATCAAATCAGCGATGTACTTAT 58.662 33.333 0.00 0.00 0.00 1.73
3739 3983 3.885297 TGCTTTTGATATAGCTGAAGGGC 59.115 43.478 0.00 0.00 38.22 5.19
3831 4075 3.722147 GCTAAATCAGCCTCGAGATGAA 58.278 45.455 15.71 2.50 45.23 2.57
3951 4195 3.118261 TCAGAAAGTTGCACAGAGAAGGT 60.118 43.478 0.00 0.00 0.00 3.50
3966 4210 7.066163 CACAGAGAAGGTATCAATAATGCAACA 59.934 37.037 0.00 0.00 0.00 3.33
4005 4249 2.033299 TGCTGTGCTTTTTGCTACTGTC 59.967 45.455 0.00 0.00 43.37 3.51
4044 4288 3.007940 TCACTGTACCTGGTGGAAATGAG 59.992 47.826 10.23 0.00 37.04 2.90
4667 4911 8.844244 AGATTACTCACATTATTCCTTGATTGC 58.156 33.333 0.00 0.00 0.00 3.56
4774 5018 3.247411 TGCACAATCTGTTGTACAAGTCG 59.753 43.478 8.98 0.45 46.49 4.18
4843 5087 4.319766 GCACAATCTGTTGTACAAGTGAGG 60.320 45.833 21.13 14.59 46.49 3.86
4882 5126 6.585416 GTTCCATTTTTCCAGCCATCATAAT 58.415 36.000 0.00 0.00 0.00 1.28
4894 5138 5.237996 CAGCCATCATAATTCACGAGACATT 59.762 40.000 0.00 0.00 0.00 2.71
5083 5327 9.743057 TGATAGTTTTTGTTCCTTTACACAATG 57.257 29.630 0.00 0.00 32.96 2.82
5118 5362 7.039853 TGTTTTGAGGATGCTGATTTTGTATGA 60.040 33.333 0.00 0.00 0.00 2.15
5239 5513 6.584185 TTTAGTTCCTTTACAGAATTGGGC 57.416 37.500 0.00 0.00 0.00 5.36
5240 5514 4.112634 AGTTCCTTTACAGAATTGGGCA 57.887 40.909 0.00 0.00 0.00 5.36
5248 5522 3.880047 ACAGAATTGGGCATCATGTTG 57.120 42.857 0.00 0.00 0.00 3.33
5322 5596 7.392418 ACTACAAATTGTTTAGTACTCCCTCC 58.608 38.462 3.17 0.00 0.00 4.30
5323 5597 5.243207 ACAAATTGTTTAGTACTCCCTCCG 58.757 41.667 0.00 0.00 0.00 4.63
5324 5598 5.221783 ACAAATTGTTTAGTACTCCCTCCGT 60.222 40.000 0.00 0.00 0.00 4.69
5325 5599 4.732672 ATTGTTTAGTACTCCCTCCGTC 57.267 45.455 0.00 0.00 0.00 4.79
5326 5600 2.450476 TGTTTAGTACTCCCTCCGTCC 58.550 52.381 0.00 0.00 0.00 4.79
5327 5601 1.403323 GTTTAGTACTCCCTCCGTCCG 59.597 57.143 0.00 0.00 0.00 4.79
5328 5602 0.911769 TTAGTACTCCCTCCGTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
5329 5603 0.911769 TAGTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
5330 5604 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
5331 5605 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
5332 5606 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
5333 5607 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
5334 5608 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
5335 5609 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
5336 5610 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
5337 5611 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
5338 5612 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
5339 5613 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
5340 5614 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
5341 5615 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
5342 5616 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
5343 5617 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
5344 5618 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
5345 5619 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
5346 5620 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
5347 5621 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
5348 5622 7.537306 CGTCCGAAAATACTTGTCATCAAAATT 59.463 33.333 0.00 0.00 32.87 1.82
5349 5623 8.638565 GTCCGAAAATACTTGTCATCAAAATTG 58.361 33.333 0.00 0.00 32.87 2.32
5350 5624 8.572185 TCCGAAAATACTTGTCATCAAAATTGA 58.428 29.630 0.00 0.00 42.14 2.57
5405 5679 9.607333 ATGTCTAGATACATCTCCTTTTATCCA 57.393 33.333 0.00 0.00 35.08 3.41
5406 5680 9.607333 TGTCTAGATACATCTCCTTTTATCCAT 57.393 33.333 0.00 0.00 38.32 3.41
5414 5688 8.827832 ACATCTCCTTTTATCCATTTTGATGA 57.172 30.769 0.00 0.00 33.85 2.92
5415 5689 8.689972 ACATCTCCTTTTATCCATTTTGATGAC 58.310 33.333 0.00 0.00 33.85 3.06
5416 5690 8.689061 CATCTCCTTTTATCCATTTTGATGACA 58.311 33.333 0.00 0.00 32.05 3.58
5417 5691 8.648698 TCTCCTTTTATCCATTTTGATGACAA 57.351 30.769 0.00 0.00 0.00 3.18
5418 5692 8.742777 TCTCCTTTTATCCATTTTGATGACAAG 58.257 33.333 0.00 0.00 37.32 3.16
5419 5693 8.421249 TCCTTTTATCCATTTTGATGACAAGT 57.579 30.769 0.00 0.00 37.32 3.16
5420 5694 9.527157 TCCTTTTATCCATTTTGATGACAAGTA 57.473 29.630 0.00 0.00 37.32 2.24
5426 5700 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
5427 5701 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
5428 5702 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
5429 5703 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
5430 5704 4.545208 TGATGACAAGTATTTCCGGACA 57.455 40.909 1.83 0.00 0.00 4.02
5431 5705 4.503910 TGATGACAAGTATTTCCGGACAG 58.496 43.478 1.83 0.00 0.00 3.51
5432 5706 4.221924 TGATGACAAGTATTTCCGGACAGA 59.778 41.667 1.83 0.00 0.00 3.41
5433 5707 4.188247 TGACAAGTATTTCCGGACAGAG 57.812 45.455 1.83 0.00 0.00 3.35
5434 5708 3.056107 TGACAAGTATTTCCGGACAGAGG 60.056 47.826 1.83 0.00 0.00 3.69
5435 5709 2.236395 ACAAGTATTTCCGGACAGAGGG 59.764 50.000 1.83 0.00 0.00 4.30
5436 5710 2.500098 CAAGTATTTCCGGACAGAGGGA 59.500 50.000 1.83 0.00 0.00 4.20
5437 5711 2.389715 AGTATTTCCGGACAGAGGGAG 58.610 52.381 1.83 0.00 33.01 4.30
5438 5712 2.108970 GTATTTCCGGACAGAGGGAGT 58.891 52.381 1.83 0.00 33.01 3.85
5439 5713 2.544844 ATTTCCGGACAGAGGGAGTA 57.455 50.000 1.83 0.00 33.01 2.59
5440 5714 2.314071 TTTCCGGACAGAGGGAGTAA 57.686 50.000 1.83 0.00 33.01 2.24
5441 5715 1.553706 TTCCGGACAGAGGGAGTAAC 58.446 55.000 1.83 0.00 33.01 2.50
5442 5716 0.406750 TCCGGACAGAGGGAGTAACA 59.593 55.000 0.00 0.00 0.00 2.41
5443 5717 1.203087 TCCGGACAGAGGGAGTAACAA 60.203 52.381 0.00 0.00 0.00 2.83
5444 5718 1.831736 CCGGACAGAGGGAGTAACAAT 59.168 52.381 0.00 0.00 0.00 2.71
5445 5719 2.236395 CCGGACAGAGGGAGTAACAATT 59.764 50.000 0.00 0.00 0.00 2.32
5446 5720 3.307480 CCGGACAGAGGGAGTAACAATTT 60.307 47.826 0.00 0.00 0.00 1.82
5447 5721 4.081309 CCGGACAGAGGGAGTAACAATTTA 60.081 45.833 0.00 0.00 0.00 1.40
5448 5722 5.484715 CGGACAGAGGGAGTAACAATTTAA 58.515 41.667 0.00 0.00 0.00 1.52
5449 5723 5.935789 CGGACAGAGGGAGTAACAATTTAAA 59.064 40.000 0.00 0.00 0.00 1.52
5450 5724 6.128363 CGGACAGAGGGAGTAACAATTTAAAC 60.128 42.308 0.00 0.00 0.00 2.01
5451 5725 6.150641 GGACAGAGGGAGTAACAATTTAAACC 59.849 42.308 0.00 0.00 0.00 3.27
5452 5726 6.849151 ACAGAGGGAGTAACAATTTAAACCT 58.151 36.000 0.00 0.00 0.00 3.50
5453 5727 7.295340 ACAGAGGGAGTAACAATTTAAACCTT 58.705 34.615 0.00 0.00 0.00 3.50
5454 5728 7.447545 ACAGAGGGAGTAACAATTTAAACCTTC 59.552 37.037 0.00 0.00 0.00 3.46
5455 5729 6.946583 AGAGGGAGTAACAATTTAAACCTTCC 59.053 38.462 0.00 0.00 29.11 3.46
5456 5730 6.860034 AGGGAGTAACAATTTAAACCTTCCT 58.140 36.000 0.00 0.00 0.00 3.36
5457 5731 6.946583 AGGGAGTAACAATTTAAACCTTCCTC 59.053 38.462 0.00 0.00 0.00 3.71
5458 5732 6.717997 GGGAGTAACAATTTAAACCTTCCTCA 59.282 38.462 0.00 0.00 0.00 3.86
5459 5733 7.094334 GGGAGTAACAATTTAAACCTTCCTCAG 60.094 40.741 0.00 0.00 0.00 3.35
5460 5734 7.447545 GGAGTAACAATTTAAACCTTCCTCAGT 59.552 37.037 0.00 0.00 0.00 3.41
5461 5735 8.762481 AGTAACAATTTAAACCTTCCTCAGTT 57.238 30.769 0.00 0.00 0.00 3.16
5462 5736 8.630037 AGTAACAATTTAAACCTTCCTCAGTTG 58.370 33.333 0.00 0.00 0.00 3.16
5463 5737 7.654022 AACAATTTAAACCTTCCTCAGTTGA 57.346 32.000 0.00 0.00 0.00 3.18
5464 5738 7.277174 ACAATTTAAACCTTCCTCAGTTGAG 57.723 36.000 2.09 2.09 41.71 3.02
5465 5739 6.833933 ACAATTTAAACCTTCCTCAGTTGAGT 59.166 34.615 8.23 0.00 40.48 3.41
5466 5740 6.884280 ATTTAAACCTTCCTCAGTTGAGTG 57.116 37.500 8.23 0.84 40.48 3.51
5467 5741 2.938956 AACCTTCCTCAGTTGAGTGG 57.061 50.000 8.23 9.16 40.48 4.00
5468 5742 1.807814 ACCTTCCTCAGTTGAGTGGT 58.192 50.000 8.23 9.69 40.48 4.16
5469 5743 2.972348 ACCTTCCTCAGTTGAGTGGTA 58.028 47.619 13.37 0.00 40.48 3.25
5470 5744 3.314693 ACCTTCCTCAGTTGAGTGGTAA 58.685 45.455 13.37 2.14 40.48 2.85
5471 5745 3.910627 ACCTTCCTCAGTTGAGTGGTAAT 59.089 43.478 13.37 0.00 40.48 1.89
5472 5746 4.351111 ACCTTCCTCAGTTGAGTGGTAATT 59.649 41.667 13.37 0.00 40.48 1.40
5473 5747 5.163088 ACCTTCCTCAGTTGAGTGGTAATTT 60.163 40.000 13.37 0.00 40.48 1.82
5474 5748 5.182001 CCTTCCTCAGTTGAGTGGTAATTTG 59.818 44.000 8.23 0.00 40.48 2.32
5475 5749 5.304686 TCCTCAGTTGAGTGGTAATTTGT 57.695 39.130 8.23 0.00 40.48 2.83
5476 5750 5.690865 TCCTCAGTTGAGTGGTAATTTGTT 58.309 37.500 8.23 0.00 40.48 2.83
5477 5751 5.530915 TCCTCAGTTGAGTGGTAATTTGTTG 59.469 40.000 8.23 0.00 40.48 3.33
5478 5752 5.530915 CCTCAGTTGAGTGGTAATTTGTTGA 59.469 40.000 8.23 0.00 40.48 3.18
5479 5753 6.207417 CCTCAGTTGAGTGGTAATTTGTTGAT 59.793 38.462 8.23 0.00 40.48 2.57
5480 5754 7.202016 TCAGTTGAGTGGTAATTTGTTGATC 57.798 36.000 0.00 0.00 0.00 2.92
5481 5755 6.998074 TCAGTTGAGTGGTAATTTGTTGATCT 59.002 34.615 0.00 0.00 0.00 2.75
5482 5756 7.502226 TCAGTTGAGTGGTAATTTGTTGATCTT 59.498 33.333 0.00 0.00 0.00 2.40
5483 5757 7.592533 CAGTTGAGTGGTAATTTGTTGATCTTG 59.407 37.037 0.00 0.00 0.00 3.02
5484 5758 7.285401 AGTTGAGTGGTAATTTGTTGATCTTGT 59.715 33.333 0.00 0.00 0.00 3.16
5485 5759 7.202016 TGAGTGGTAATTTGTTGATCTTGTC 57.798 36.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.343758 GGTGAAGCTCGTCTGGCA 59.656 61.111 0.00 0.00 0.00 4.92
2 3 2.125912 CGGGTGAAGCTCGTCTGG 60.126 66.667 0.00 0.00 36.08 3.86
8 9 3.591254 AAGCCGACGGGTGAAGCTC 62.591 63.158 21.02 0.00 31.90 4.09
9 10 3.178540 AAAGCCGACGGGTGAAGCT 62.179 57.895 21.02 3.51 31.90 3.74
10 11 2.668550 AAAGCCGACGGGTGAAGC 60.669 61.111 21.02 0.74 31.90 3.86
11 12 0.245539 TAGAAAGCCGACGGGTGAAG 59.754 55.000 21.02 0.00 31.90 3.02
12 13 0.037975 GTAGAAAGCCGACGGGTGAA 60.038 55.000 21.02 2.52 31.90 3.18
13 14 1.180456 TGTAGAAAGCCGACGGGTGA 61.180 55.000 21.02 2.65 31.90 4.02
14 15 0.736325 CTGTAGAAAGCCGACGGGTG 60.736 60.000 21.02 0.62 31.90 4.61
15 16 1.590147 CTGTAGAAAGCCGACGGGT 59.410 57.895 13.98 13.98 34.97 5.28
16 17 1.810030 GCTGTAGAAAGCCGACGGG 60.810 63.158 17.22 0.00 37.20 5.28
17 18 0.669318 TTGCTGTAGAAAGCCGACGG 60.669 55.000 10.29 10.29 42.83 4.79
18 19 0.438830 GTTGCTGTAGAAAGCCGACG 59.561 55.000 0.00 0.00 42.83 5.12
19 20 0.438830 CGTTGCTGTAGAAAGCCGAC 59.561 55.000 0.00 0.00 42.83 4.79
20 21 0.315886 TCGTTGCTGTAGAAAGCCGA 59.684 50.000 0.00 0.00 42.83 5.54
21 22 0.438830 GTCGTTGCTGTAGAAAGCCG 59.561 55.000 0.00 0.00 42.83 5.52
22 23 1.508632 TGTCGTTGCTGTAGAAAGCC 58.491 50.000 0.00 0.00 42.83 4.35
23 24 2.096218 CCTTGTCGTTGCTGTAGAAAGC 60.096 50.000 0.00 0.00 43.82 3.51
24 25 3.059597 CACCTTGTCGTTGCTGTAGAAAG 60.060 47.826 0.00 0.00 0.00 2.62
25 26 2.869801 CACCTTGTCGTTGCTGTAGAAA 59.130 45.455 0.00 0.00 0.00 2.52
26 27 2.479837 CACCTTGTCGTTGCTGTAGAA 58.520 47.619 0.00 0.00 0.00 2.10
27 28 1.270094 CCACCTTGTCGTTGCTGTAGA 60.270 52.381 0.00 0.00 0.00 2.59
28 29 1.148310 CCACCTTGTCGTTGCTGTAG 58.852 55.000 0.00 0.00 0.00 2.74
33 34 2.551912 CCACCCACCTTGTCGTTGC 61.552 63.158 0.00 0.00 0.00 4.17
56 57 4.821589 CGCTGCCCCGTCTCTTCC 62.822 72.222 0.00 0.00 0.00 3.46
68 69 1.078201 GGCAAAACATTAGCCGCTGC 61.078 55.000 2.16 0.00 38.86 5.25
99 100 5.417811 TGATTCTCTGCTCAGATGAGAAAC 58.582 41.667 13.98 10.47 45.87 2.78
169 170 1.668151 GAGCGTCGGAGCACCTTTT 60.668 57.895 0.00 0.00 40.15 2.27
170 171 2.048127 GAGCGTCGGAGCACCTTT 60.048 61.111 0.00 0.00 40.15 3.11
177 178 4.753877 TGCGAACGAGCGTCGGAG 62.754 66.667 11.13 4.37 45.59 4.63
192 193 0.375106 GTCTTGATGCTACGGCTTGC 59.625 55.000 0.00 0.00 39.59 4.01
211 212 3.219281 CATAATAAAAGGGACCCGGTGG 58.781 50.000 4.40 0.00 37.80 4.61
212 213 3.219281 CCATAATAAAAGGGACCCGGTG 58.781 50.000 4.40 0.00 0.00 4.94
213 214 2.176148 CCCATAATAAAAGGGACCCGGT 59.824 50.000 4.40 0.00 45.80 5.28
214 215 2.871453 CCCATAATAAAAGGGACCCGG 58.129 52.381 4.40 0.00 45.80 5.73
215 216 2.235891 GCCCATAATAAAAGGGACCCG 58.764 52.381 4.40 0.00 45.80 5.28
231 239 1.133407 GACAACGAAACAAAGTGCCCA 59.867 47.619 0.00 0.00 0.00 5.36
255 263 4.862574 GCAGGTCCCGTCATTTTTATTTTC 59.137 41.667 0.00 0.00 0.00 2.29
256 264 4.322424 GGCAGGTCCCGTCATTTTTATTTT 60.322 41.667 0.00 0.00 0.00 1.82
257 265 3.194755 GGCAGGTCCCGTCATTTTTATTT 59.805 43.478 0.00 0.00 0.00 1.40
260 268 1.074084 TGGCAGGTCCCGTCATTTTTA 59.926 47.619 0.00 0.00 0.00 1.52
262 270 0.893727 GTGGCAGGTCCCGTCATTTT 60.894 55.000 0.00 0.00 0.00 1.82
329 339 3.742640 GCTGGTGACATGGAAGGAGATAC 60.743 52.174 0.00 0.00 41.51 2.24
356 366 0.320946 GGGATGTTCGTTGTCCGGAA 60.321 55.000 5.23 0.00 37.11 4.30
380 390 2.087646 GCCCTTTTGGATCTCTGTGTC 58.912 52.381 0.00 0.00 44.07 3.67
381 391 1.425066 TGCCCTTTTGGATCTCTGTGT 59.575 47.619 0.00 0.00 44.07 3.72
382 392 2.205022 TGCCCTTTTGGATCTCTGTG 57.795 50.000 0.00 0.00 44.07 3.66
383 393 2.309755 TGATGCCCTTTTGGATCTCTGT 59.690 45.455 0.00 0.00 44.07 3.41
384 394 3.008835 TGATGCCCTTTTGGATCTCTG 57.991 47.619 0.00 0.00 44.07 3.35
385 395 3.744940 TTGATGCCCTTTTGGATCTCT 57.255 42.857 0.00 0.00 44.07 3.10
386 396 4.221482 ACTTTTGATGCCCTTTTGGATCTC 59.779 41.667 0.00 0.00 44.07 2.75
387 397 4.020839 CACTTTTGATGCCCTTTTGGATCT 60.021 41.667 0.00 0.00 44.07 2.75
388 398 4.248058 CACTTTTGATGCCCTTTTGGATC 58.752 43.478 0.00 0.00 44.07 3.36
389 399 3.647590 ACACTTTTGATGCCCTTTTGGAT 59.352 39.130 0.00 0.00 44.07 3.41
390 400 3.037549 ACACTTTTGATGCCCTTTTGGA 58.962 40.909 0.00 0.00 44.07 3.53
523 533 0.610174 GAGTGGTGTGAGCTGATGGA 59.390 55.000 0.00 0.00 0.00 3.41
532 542 4.593206 ACTTTCTGATTAGGAGTGGTGTGA 59.407 41.667 0.00 0.00 0.00 3.58
540 550 5.250235 TCTACGCACTTTCTGATTAGGAG 57.750 43.478 0.00 0.00 0.00 3.69
541 551 5.654603 TTCTACGCACTTTCTGATTAGGA 57.345 39.130 0.00 0.00 0.00 2.94
544 554 8.766000 TTTGTATTCTACGCACTTTCTGATTA 57.234 30.769 0.00 0.00 0.00 1.75
554 564 5.055973 CGTTTCGTTTTTGTATTCTACGCAC 59.944 40.000 0.00 0.00 32.65 5.34
556 566 5.055973 CACGTTTCGTTTTTGTATTCTACGC 59.944 40.000 0.00 0.00 38.32 4.42
559 569 5.442402 GGCACGTTTCGTTTTTGTATTCTA 58.558 37.500 0.00 0.00 38.32 2.10
602 614 1.534175 GGAAGACTCCTGCGTCATACG 60.534 57.143 0.00 0.00 40.79 3.06
613 625 1.290134 ATGGAAGTGGGGAAGACTCC 58.710 55.000 0.00 0.00 41.59 3.85
628 640 4.223923 GTCCAAGAGAAAGAGGAGAATGGA 59.776 45.833 0.00 0.00 32.33 3.41
642 654 1.153765 CGCGCATGAGTCCAAGAGA 60.154 57.895 8.75 0.00 0.00 3.10
750 762 3.062466 GAGGGGAAAAGCCGTGGC 61.062 66.667 1.67 1.67 42.33 5.01
990 1029 4.179579 GGCAACATCGCGGGAAGC 62.180 66.667 6.13 8.52 43.95 3.86
1034 1073 2.233922 ACGACCACCATTTCCAGTAGAG 59.766 50.000 0.00 0.00 0.00 2.43
1035 1074 2.028476 CACGACCACCATTTCCAGTAGA 60.028 50.000 0.00 0.00 0.00 2.59
1036 1075 2.289444 ACACGACCACCATTTCCAGTAG 60.289 50.000 0.00 0.00 0.00 2.57
1037 1076 1.695242 ACACGACCACCATTTCCAGTA 59.305 47.619 0.00 0.00 0.00 2.74
1038 1077 0.472471 ACACGACCACCATTTCCAGT 59.528 50.000 0.00 0.00 0.00 4.00
1039 1078 1.535462 GAACACGACCACCATTTCCAG 59.465 52.381 0.00 0.00 0.00 3.86
1040 1079 1.600023 GAACACGACCACCATTTCCA 58.400 50.000 0.00 0.00 0.00 3.53
1041 1080 0.515564 CGAACACGACCACCATTTCC 59.484 55.000 0.00 0.00 0.00 3.13
1042 1081 0.515564 CCGAACACGACCACCATTTC 59.484 55.000 0.00 0.00 0.00 2.17
1043 1082 0.107081 TCCGAACACGACCACCATTT 59.893 50.000 0.00 0.00 0.00 2.32
1044 1083 0.107081 TTCCGAACACGACCACCATT 59.893 50.000 0.00 0.00 0.00 3.16
1045 1084 0.323629 ATTCCGAACACGACCACCAT 59.676 50.000 0.00 0.00 0.00 3.55
1049 1088 0.668096 CCGAATTCCGAACACGACCA 60.668 55.000 0.00 0.00 41.76 4.02
1057 1096 2.125431 GGGCGTCCGAATTCCGAA 60.125 61.111 6.76 0.00 41.76 4.30
1070 1109 4.411993 AACAAACAAAAACAAAAGGGCG 57.588 36.364 0.00 0.00 0.00 6.13
1073 1112 7.043125 CCCAAACAAACAAACAAAAACAAAAGG 60.043 33.333 0.00 0.00 0.00 3.11
1074 1113 7.702348 TCCCAAACAAACAAACAAAAACAAAAG 59.298 29.630 0.00 0.00 0.00 2.27
1079 1118 5.470437 TCCTCCCAAACAAACAAACAAAAAC 59.530 36.000 0.00 0.00 0.00 2.43
1080 1119 5.621193 TCCTCCCAAACAAACAAACAAAAA 58.379 33.333 0.00 0.00 0.00 1.94
1084 1123 2.167487 GCTCCTCCCAAACAAACAAACA 59.833 45.455 0.00 0.00 0.00 2.83
1085 1124 2.798145 CGCTCCTCCCAAACAAACAAAC 60.798 50.000 0.00 0.00 0.00 2.93
1088 1127 0.821711 CCGCTCCTCCCAAACAAACA 60.822 55.000 0.00 0.00 0.00 2.83
1090 1129 0.183971 TTCCGCTCCTCCCAAACAAA 59.816 50.000 0.00 0.00 0.00 2.83
1091 1130 0.404040 ATTCCGCTCCTCCCAAACAA 59.596 50.000 0.00 0.00 0.00 2.83
1092 1131 0.404040 AATTCCGCTCCTCCCAAACA 59.596 50.000 0.00 0.00 0.00 2.83
1093 1132 0.811281 CAATTCCGCTCCTCCCAAAC 59.189 55.000 0.00 0.00 0.00 2.93
1094 1133 0.323360 CCAATTCCGCTCCTCCCAAA 60.323 55.000 0.00 0.00 0.00 3.28
1095 1134 1.302949 CCAATTCCGCTCCTCCCAA 59.697 57.895 0.00 0.00 0.00 4.12
1096 1135 2.679342 CCCAATTCCGCTCCTCCCA 61.679 63.158 0.00 0.00 0.00 4.37
1097 1136 1.709994 ATCCCAATTCCGCTCCTCCC 61.710 60.000 0.00 0.00 0.00 4.30
1098 1137 0.183731 AATCCCAATTCCGCTCCTCC 59.816 55.000 0.00 0.00 0.00 4.30
1099 1138 1.598882 GAATCCCAATTCCGCTCCTC 58.401 55.000 0.00 0.00 36.12 3.71
1119 1158 2.036089 GCCTCACGGTCCTAGGAATTAG 59.964 54.545 14.65 7.73 31.64 1.73
1120 1159 2.037144 GCCTCACGGTCCTAGGAATTA 58.963 52.381 14.65 0.00 31.64 1.40
1121 1160 0.831307 GCCTCACGGTCCTAGGAATT 59.169 55.000 14.65 0.00 31.64 2.17
1122 1161 0.032017 AGCCTCACGGTCCTAGGAAT 60.032 55.000 14.65 0.00 31.64 3.01
1163 1202 2.661537 GCCCAAACAGCAAACGGC 60.662 61.111 0.00 0.00 45.30 5.68
1164 1203 2.354539 CGCCCAAACAGCAAACGG 60.355 61.111 0.00 0.00 0.00 4.44
1165 1204 3.029735 GCGCCCAAACAGCAAACG 61.030 61.111 0.00 0.00 0.00 3.60
1171 1215 3.058160 CCCTCTGCGCCCAAACAG 61.058 66.667 4.18 0.00 35.15 3.16
1380 1424 3.013932 CCTCCAGCTGCTCCCCTT 61.014 66.667 8.66 0.00 0.00 3.95
1628 1672 3.698040 CTCAAGGCTCTGCAATTTACCAT 59.302 43.478 0.00 0.00 0.00 3.55
1717 1773 4.940046 ACTTCTGCACACATTTCCAGATAG 59.060 41.667 0.00 0.00 34.62 2.08
1809 1868 8.986929 AATCATGTTAAAATGTTTTCCCCAAA 57.013 26.923 5.52 0.00 0.00 3.28
2009 2078 8.562892 CAGATTTAAACACCTGATAGGCTAATG 58.437 37.037 0.00 0.00 39.63 1.90
2020 2089 6.016777 AGCAAGAGAACAGATTTAAACACCTG 60.017 38.462 10.69 10.69 0.00 4.00
2028 2097 5.934625 GGTCAGAAGCAAGAGAACAGATTTA 59.065 40.000 0.00 0.00 0.00 1.40
2104 2173 3.824443 GCACACCAGTTTACCCAATTAGT 59.176 43.478 0.00 0.00 0.00 2.24
2217 2294 8.607441 TGATGTGAATCTACAAATATAGGTGC 57.393 34.615 0.00 0.00 33.69 5.01
2461 2550 4.412199 TGCTTCCTACATAACTAATGGGCT 59.588 41.667 0.00 0.00 40.16 5.19
2507 2713 1.755959 TGCACAACAGCTGACCAAAAT 59.244 42.857 23.35 0.00 34.99 1.82
2572 2778 2.500392 AAGCGGGGTAGTATTTGCAA 57.500 45.000 0.00 0.00 0.00 4.08
2594 2800 0.107945 GTCCCCTTGTAGCTGCTGAG 60.108 60.000 13.43 7.42 0.00 3.35
2699 2905 1.004560 TCCCTGTCGAGCAGCAAAG 60.005 57.895 8.85 0.00 43.71 2.77
2738 2944 5.241662 AGCTGTGGATCTTTCTCAAGTAAC 58.758 41.667 0.00 0.00 0.00 2.50
3012 3218 7.048512 GGTGTAATCAGCAGGTAGAGTTAAAT 58.951 38.462 0.00 0.00 41.16 1.40
3085 3294 3.868757 TTGTACTAGAGCTGCGACAAT 57.131 42.857 0.00 0.00 0.00 2.71
3098 3307 9.562583 GCGACAATTAATTTGGATTTTGTACTA 57.437 29.630 0.00 0.00 39.80 1.82
3099 3308 7.544217 GGCGACAATTAATTTGGATTTTGTACT 59.456 33.333 0.00 0.00 39.80 2.73
3100 3309 7.462200 CGGCGACAATTAATTTGGATTTTGTAC 60.462 37.037 0.00 0.00 39.80 2.90
3101 3310 6.528423 CGGCGACAATTAATTTGGATTTTGTA 59.472 34.615 0.00 0.00 39.80 2.41
3102 3311 5.347364 CGGCGACAATTAATTTGGATTTTGT 59.653 36.000 0.00 0.00 39.80 2.83
3103 3312 5.723678 GCGGCGACAATTAATTTGGATTTTG 60.724 40.000 12.98 0.00 39.80 2.44
3104 3313 4.328712 GCGGCGACAATTAATTTGGATTTT 59.671 37.500 12.98 0.00 39.80 1.82
3107 3316 2.687935 AGCGGCGACAATTAATTTGGAT 59.312 40.909 12.98 0.00 39.80 3.41
3109 3318 2.097466 AGAGCGGCGACAATTAATTTGG 59.903 45.455 12.98 0.00 39.80 3.28
3110 3319 3.405170 AGAGCGGCGACAATTAATTTG 57.595 42.857 12.98 0.00 41.36 2.32
3111 3320 4.189231 ACTAGAGCGGCGACAATTAATTT 58.811 39.130 12.98 0.00 0.00 1.82
3115 3324 2.684374 TGTACTAGAGCGGCGACAATTA 59.316 45.455 12.98 0.00 0.00 1.40
3116 3325 1.475280 TGTACTAGAGCGGCGACAATT 59.525 47.619 12.98 0.00 0.00 2.32
3118 3327 0.883153 TTGTACTAGAGCGGCGACAA 59.117 50.000 12.98 7.61 0.00 3.18
3119 3328 0.169672 GTTGTACTAGAGCGGCGACA 59.830 55.000 12.98 0.00 0.00 4.35
3120 3329 0.450983 AGTTGTACTAGAGCGGCGAC 59.549 55.000 12.98 3.29 0.00 5.19
3121 3330 1.171308 AAGTTGTACTAGAGCGGCGA 58.829 50.000 12.98 0.00 0.00 5.54
3123 3332 2.685100 ACAAAGTTGTACTAGAGCGGC 58.315 47.619 0.00 0.00 40.16 6.53
3133 3342 4.216902 TCGCAGCTCTAGTACAAAGTTGTA 59.783 41.667 0.00 0.00 42.35 2.41
3134 3343 3.005472 TCGCAGCTCTAGTACAAAGTTGT 59.995 43.478 1.75 1.75 44.86 3.32
3135 3344 3.365220 GTCGCAGCTCTAGTACAAAGTTG 59.635 47.826 0.00 0.00 0.00 3.16
3136 3345 3.005472 TGTCGCAGCTCTAGTACAAAGTT 59.995 43.478 0.00 0.00 0.00 2.66
3154 3363 4.436852 CCGTCCAATCCAAATTAACTGTCG 60.437 45.833 0.00 0.00 0.00 4.35
3159 3368 5.231265 GACTCCGTCCAATCCAAATTAAC 57.769 43.478 0.00 0.00 0.00 2.01
3175 3384 3.936372 TTCAACTTCTACTGGACTCCG 57.064 47.619 0.00 0.00 0.00 4.63
3181 3390 6.549952 GCTGATTTGATTCAACTTCTACTGG 58.450 40.000 0.00 0.00 0.00 4.00
3516 3756 8.372521 GTGAAAATTTGTGATATAAAACTGCCG 58.627 33.333 0.00 0.00 0.00 5.69
3532 3772 9.825972 AACATGTAATAGACGAGTGAAAATTTG 57.174 29.630 0.00 0.00 0.00 2.32
3739 3983 1.446907 GACTCCTCACAATGTGGCAG 58.553 55.000 13.95 9.18 33.87 4.85
3831 4075 0.962489 CTGTCACTGTCTTCCGGAGT 59.038 55.000 3.34 0.00 0.00 3.85
3966 4210 4.700213 ACAGCAACAACAGTTACAGAGTTT 59.300 37.500 0.00 0.00 0.00 2.66
4044 4288 3.559238 ACAATCGCAACTCCATTGTTC 57.441 42.857 0.00 0.00 37.44 3.18
4667 4911 7.113404 CGTTTGTCATTACAGAAAGGAATTGTG 59.887 37.037 0.00 0.00 36.83 3.33
4774 5018 4.566759 GGAACAGAAAGAAAAAGTGCAACC 59.433 41.667 0.00 0.00 37.80 3.77
4894 5138 8.247562 GCATACATACCAAATAACCAAAACAGA 58.752 33.333 0.00 0.00 0.00 3.41
5239 5513 3.275999 TCAGCATCCTCACAACATGATG 58.724 45.455 0.00 0.00 36.48 3.07
5240 5514 3.639672 TCAGCATCCTCACAACATGAT 57.360 42.857 0.00 0.00 36.48 2.45
5248 5522 4.012374 TCCAAAAGAATCAGCATCCTCAC 58.988 43.478 0.00 0.00 0.00 3.51
5298 5572 6.534079 CGGAGGGAGTACTAAACAATTTGTAG 59.466 42.308 1.76 0.15 29.42 2.74
5299 5573 6.014327 ACGGAGGGAGTACTAAACAATTTGTA 60.014 38.462 1.76 0.00 0.00 2.41
5300 5574 5.221783 ACGGAGGGAGTACTAAACAATTTGT 60.222 40.000 0.00 0.00 0.00 2.83
5301 5575 5.243207 ACGGAGGGAGTACTAAACAATTTG 58.757 41.667 0.00 0.00 0.00 2.32
5302 5576 5.485620 GACGGAGGGAGTACTAAACAATTT 58.514 41.667 0.00 0.00 0.00 1.82
5303 5577 4.081254 GGACGGAGGGAGTACTAAACAATT 60.081 45.833 0.00 0.00 0.00 2.32
5304 5578 3.450096 GGACGGAGGGAGTACTAAACAAT 59.550 47.826 0.00 0.00 0.00 2.71
5305 5579 2.827921 GGACGGAGGGAGTACTAAACAA 59.172 50.000 0.00 0.00 0.00 2.83
5306 5580 2.450476 GGACGGAGGGAGTACTAAACA 58.550 52.381 0.00 0.00 0.00 2.83
5307 5581 1.403323 CGGACGGAGGGAGTACTAAAC 59.597 57.143 0.00 0.00 0.00 2.01
5308 5582 1.281867 TCGGACGGAGGGAGTACTAAA 59.718 52.381 0.00 0.00 0.00 1.85
5309 5583 0.911769 TCGGACGGAGGGAGTACTAA 59.088 55.000 0.00 0.00 0.00 2.24
5310 5584 0.911769 TTCGGACGGAGGGAGTACTA 59.088 55.000 0.00 0.00 0.00 1.82
5311 5585 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73
5312 5586 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
5313 5587 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
5314 5588 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
5315 5589 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
5316 5590 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
5317 5591 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
5318 5592 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
5319 5593 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
5320 5594 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
5321 5595 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
5322 5596 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
5323 5597 8.638565 CAATTTTGATGACAAGTATTTTCGGAC 58.361 33.333 0.00 0.00 37.32 4.79
5324 5598 8.572185 TCAATTTTGATGACAAGTATTTTCGGA 58.428 29.630 0.00 0.00 37.32 4.55
5325 5599 8.741101 TCAATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
5379 5653 9.607333 TGGATAAAAGGAGATGTATCTAGACAT 57.393 33.333 0.00 0.00 42.82 3.06
5380 5654 9.607333 ATGGATAAAAGGAGATGTATCTAGACA 57.393 33.333 0.00 0.00 37.25 3.41
5388 5662 9.919416 TCATCAAAATGGATAAAAGGAGATGTA 57.081 29.630 0.00 0.00 33.42 2.29
5389 5663 8.689972 GTCATCAAAATGGATAAAAGGAGATGT 58.310 33.333 0.00 0.00 33.42 3.06
5390 5664 8.689061 TGTCATCAAAATGGATAAAAGGAGATG 58.311 33.333 0.00 0.00 33.42 2.90
5391 5665 8.827832 TGTCATCAAAATGGATAAAAGGAGAT 57.172 30.769 0.00 0.00 33.42 2.75
5392 5666 8.648698 TTGTCATCAAAATGGATAAAAGGAGA 57.351 30.769 0.00 0.00 33.42 3.71
5393 5667 8.526147 ACTTGTCATCAAAATGGATAAAAGGAG 58.474 33.333 0.00 0.00 33.42 3.69
5394 5668 8.421249 ACTTGTCATCAAAATGGATAAAAGGA 57.579 30.769 0.00 0.00 33.42 3.36
5400 5674 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
5401 5675 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
5402 5676 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
5403 5677 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
5404 5678 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
5405 5679 6.432783 TGTCCGGAAATACTTGTCATCAAAAT 59.567 34.615 5.23 0.00 32.87 1.82
5406 5680 5.765677 TGTCCGGAAATACTTGTCATCAAAA 59.234 36.000 5.23 0.00 32.87 2.44
5407 5681 5.309638 TGTCCGGAAATACTTGTCATCAAA 58.690 37.500 5.23 0.00 32.87 2.69
5408 5682 4.900684 TGTCCGGAAATACTTGTCATCAA 58.099 39.130 5.23 0.00 0.00 2.57
5409 5683 4.221924 TCTGTCCGGAAATACTTGTCATCA 59.778 41.667 5.23 0.00 0.00 3.07
5410 5684 4.755411 TCTGTCCGGAAATACTTGTCATC 58.245 43.478 5.23 0.00 0.00 2.92
5411 5685 4.383118 CCTCTGTCCGGAAATACTTGTCAT 60.383 45.833 5.23 0.00 0.00 3.06
5412 5686 3.056107 CCTCTGTCCGGAAATACTTGTCA 60.056 47.826 5.23 0.00 0.00 3.58
5413 5687 3.522553 CCTCTGTCCGGAAATACTTGTC 58.477 50.000 5.23 0.00 0.00 3.18
5414 5688 2.236395 CCCTCTGTCCGGAAATACTTGT 59.764 50.000 5.23 0.00 0.00 3.16
5415 5689 2.500098 TCCCTCTGTCCGGAAATACTTG 59.500 50.000 5.23 0.00 0.00 3.16
5416 5690 2.766828 CTCCCTCTGTCCGGAAATACTT 59.233 50.000 5.23 0.00 0.00 2.24
5417 5691 2.292323 ACTCCCTCTGTCCGGAAATACT 60.292 50.000 5.23 0.00 0.00 2.12
5418 5692 2.108970 ACTCCCTCTGTCCGGAAATAC 58.891 52.381 5.23 0.00 0.00 1.89
5419 5693 2.544844 ACTCCCTCTGTCCGGAAATA 57.455 50.000 5.23 0.00 0.00 1.40
5420 5694 2.500504 GTTACTCCCTCTGTCCGGAAAT 59.499 50.000 5.23 0.00 0.00 2.17
5421 5695 1.897802 GTTACTCCCTCTGTCCGGAAA 59.102 52.381 5.23 0.00 0.00 3.13
5422 5696 1.203087 TGTTACTCCCTCTGTCCGGAA 60.203 52.381 5.23 0.00 0.00 4.30
5423 5697 0.406750 TGTTACTCCCTCTGTCCGGA 59.593 55.000 0.00 0.00 0.00 5.14
5424 5698 1.263356 TTGTTACTCCCTCTGTCCGG 58.737 55.000 0.00 0.00 0.00 5.14
5425 5699 3.611766 AATTGTTACTCCCTCTGTCCG 57.388 47.619 0.00 0.00 0.00 4.79
5426 5700 6.150641 GGTTTAAATTGTTACTCCCTCTGTCC 59.849 42.308 0.00 0.00 0.00 4.02
5427 5701 6.940867 AGGTTTAAATTGTTACTCCCTCTGTC 59.059 38.462 0.00 0.00 0.00 3.51
5428 5702 6.849151 AGGTTTAAATTGTTACTCCCTCTGT 58.151 36.000 0.00 0.00 0.00 3.41
5429 5703 7.094334 GGAAGGTTTAAATTGTTACTCCCTCTG 60.094 40.741 0.00 0.00 0.00 3.35
5430 5704 6.946583 GGAAGGTTTAAATTGTTACTCCCTCT 59.053 38.462 0.00 0.00 0.00 3.69
5431 5705 6.946583 AGGAAGGTTTAAATTGTTACTCCCTC 59.053 38.462 0.00 0.00 0.00 4.30
5432 5706 6.860034 AGGAAGGTTTAAATTGTTACTCCCT 58.140 36.000 0.00 0.00 0.00 4.20
5433 5707 6.717997 TGAGGAAGGTTTAAATTGTTACTCCC 59.282 38.462 13.05 0.00 0.00 4.30
5434 5708 7.447545 ACTGAGGAAGGTTTAAATTGTTACTCC 59.552 37.037 13.05 4.95 0.00 3.85
5435 5709 8.392372 ACTGAGGAAGGTTTAAATTGTTACTC 57.608 34.615 10.39 10.39 0.00 2.59
5436 5710 8.630037 CAACTGAGGAAGGTTTAAATTGTTACT 58.370 33.333 0.00 0.00 0.00 2.24
5437 5711 8.626526 TCAACTGAGGAAGGTTTAAATTGTTAC 58.373 33.333 0.00 0.00 0.00 2.50
5438 5712 8.754991 TCAACTGAGGAAGGTTTAAATTGTTA 57.245 30.769 0.00 0.00 0.00 2.41
5439 5713 7.342026 ACTCAACTGAGGAAGGTTTAAATTGTT 59.658 33.333 11.31 0.00 46.13 2.83
5440 5714 6.833933 ACTCAACTGAGGAAGGTTTAAATTGT 59.166 34.615 11.31 0.00 46.13 2.71
5441 5715 7.141363 CACTCAACTGAGGAAGGTTTAAATTG 58.859 38.462 11.31 0.00 46.13 2.32
5442 5716 6.265422 CCACTCAACTGAGGAAGGTTTAAATT 59.735 38.462 11.31 0.00 46.13 1.82
5443 5717 5.770162 CCACTCAACTGAGGAAGGTTTAAAT 59.230 40.000 11.31 0.00 46.13 1.40
5444 5718 5.130350 CCACTCAACTGAGGAAGGTTTAAA 58.870 41.667 11.31 0.00 46.13 1.52
5445 5719 4.165372 ACCACTCAACTGAGGAAGGTTTAA 59.835 41.667 11.31 0.00 46.13 1.52
5446 5720 3.714798 ACCACTCAACTGAGGAAGGTTTA 59.285 43.478 11.31 0.00 46.13 2.01
5447 5721 2.509964 ACCACTCAACTGAGGAAGGTTT 59.490 45.455 11.31 0.00 46.13 3.27
5448 5722 2.127708 ACCACTCAACTGAGGAAGGTT 58.872 47.619 11.31 0.12 46.13 3.50
5449 5723 1.807814 ACCACTCAACTGAGGAAGGT 58.192 50.000 11.31 11.89 46.13 3.50
5450 5724 4.559862 ATTACCACTCAACTGAGGAAGG 57.440 45.455 11.31 11.34 46.13 3.46
5451 5725 5.765182 ACAAATTACCACTCAACTGAGGAAG 59.235 40.000 11.31 2.24 46.13 3.46
5452 5726 5.690865 ACAAATTACCACTCAACTGAGGAA 58.309 37.500 11.31 0.98 46.13 3.36
5453 5727 5.304686 ACAAATTACCACTCAACTGAGGA 57.695 39.130 11.31 0.00 46.13 3.71
5454 5728 5.530915 TCAACAAATTACCACTCAACTGAGG 59.469 40.000 11.31 0.00 46.13 3.86
5456 5730 6.998074 AGATCAACAAATTACCACTCAACTGA 59.002 34.615 0.00 0.00 0.00 3.41
5457 5731 7.206981 AGATCAACAAATTACCACTCAACTG 57.793 36.000 0.00 0.00 0.00 3.16
5458 5732 7.285401 ACAAGATCAACAAATTACCACTCAACT 59.715 33.333 0.00 0.00 0.00 3.16
5459 5733 7.425606 ACAAGATCAACAAATTACCACTCAAC 58.574 34.615 0.00 0.00 0.00 3.18
5460 5734 7.581213 ACAAGATCAACAAATTACCACTCAA 57.419 32.000 0.00 0.00 0.00 3.02
5461 5735 7.202016 GACAAGATCAACAAATTACCACTCA 57.798 36.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.