Multiple sequence alignment - TraesCS3D01G348400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G348400 chr3D 100.000 4271 0 0 1 4271 460178648 460182918 0.000000e+00 7888.0
1 TraesCS3D01G348400 chr3D 84.706 85 9 3 87 168 20991970 20991887 9.840000e-12 82.4
2 TraesCS3D01G348400 chr3A 94.220 3512 122 36 356 3798 602223901 602227400 0.000000e+00 5286.0
3 TraesCS3D01G348400 chr3A 78.361 781 149 18 1403 2173 19988474 19989244 4.960000e-134 488.0
4 TraesCS3D01G348400 chr3A 88.462 338 32 3 34 364 602223376 602223713 6.650000e-108 401.0
5 TraesCS3D01G348400 chr3B 94.196 3446 100 25 424 3794 609800954 609804374 0.000000e+00 5164.0
6 TraesCS3D01G348400 chr3B 78.907 787 134 27 1403 2173 24019162 24018392 4.930000e-139 505.0
7 TraesCS3D01G348400 chr3B 89.643 280 26 3 34 311 609800583 609800861 1.890000e-93 353.0
8 TraesCS3D01G348400 chr3B 82.587 201 29 5 108 303 23134718 23134917 5.680000e-39 172.0
9 TraesCS3D01G348400 chr1B 78.486 1929 344 64 1383 3271 50204102 50205999 0.000000e+00 1197.0
10 TraesCS3D01G348400 chr1D 78.222 1924 352 62 1383 3271 32738153 32740044 0.000000e+00 1170.0
11 TraesCS3D01G348400 chr1D 91.400 407 32 3 3868 4271 445788050 445788456 4.830000e-154 555.0
12 TraesCS3D01G348400 chr1A 77.638 1905 368 54 1403 3275 31254298 31252420 0.000000e+00 1105.0
13 TraesCS3D01G348400 chr4B 77.289 1933 361 58 1394 3269 428845424 428847335 0.000000e+00 1066.0
14 TraesCS3D01G348400 chr4A 76.617 1933 374 58 1394 3269 116852177 116850266 0.000000e+00 994.0
15 TraesCS3D01G348400 chr5A 76.752 1884 372 59 1403 3262 96983793 96985634 0.000000e+00 992.0
16 TraesCS3D01G348400 chr5A 80.687 233 38 6 7 235 691659412 691659641 1.580000e-39 174.0
17 TraesCS3D01G348400 chr4D 77.053 1778 347 57 1538 3271 348698405 348700165 0.000000e+00 966.0
18 TraesCS3D01G348400 chr4D 79.812 956 169 20 2326 3269 348565262 348566205 0.000000e+00 675.0
19 TraesCS3D01G348400 chr4D 78.397 736 144 14 1425 2152 348564325 348565053 8.370000e-127 464.0
20 TraesCS3D01G348400 chr5D 97.783 406 8 1 3867 4271 538253237 538252832 0.000000e+00 699.0
21 TraesCS3D01G348400 chr5D 96.734 398 11 2 3876 4271 516135802 516135405 0.000000e+00 662.0
22 TraesCS3D01G348400 chr5D 95.320 406 17 2 3868 4271 48307127 48306722 1.000000e-180 643.0
23 TraesCS3D01G348400 chr5D 93.857 407 21 4 3868 4271 463197838 463198243 1.020000e-170 610.0
24 TraesCS3D01G348400 chr5D 93.366 407 23 4 3868 4271 555328515 555328920 2.200000e-167 599.0
25 TraesCS3D01G348400 chr5D 90.754 411 32 5 3866 4271 487611285 487610876 1.040000e-150 544.0
26 TraesCS3D01G348400 chrUn 96.078 408 14 2 3866 4271 111163317 111163724 0.000000e+00 664.0
27 TraesCS3D01G348400 chr7D 93.120 407 24 4 3868 4271 56104955 56105360 1.020000e-165 593.0
28 TraesCS3D01G348400 chr7D 87.234 94 11 1 131 224 605170147 605170055 5.840000e-19 106.0
29 TraesCS3D01G348400 chr2B 78.866 194 40 1 48 240 28153037 28152844 3.470000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G348400 chr3D 460178648 460182918 4270 False 7888.0 7888 100.0000 1 4271 1 chr3D.!!$F1 4270
1 TraesCS3D01G348400 chr3A 602223376 602227400 4024 False 2843.5 5286 91.3410 34 3798 2 chr3A.!!$F2 3764
2 TraesCS3D01G348400 chr3A 19988474 19989244 770 False 488.0 488 78.3610 1403 2173 1 chr3A.!!$F1 770
3 TraesCS3D01G348400 chr3B 609800583 609804374 3791 False 2758.5 5164 91.9195 34 3794 2 chr3B.!!$F2 3760
4 TraesCS3D01G348400 chr3B 24018392 24019162 770 True 505.0 505 78.9070 1403 2173 1 chr3B.!!$R1 770
5 TraesCS3D01G348400 chr1B 50204102 50205999 1897 False 1197.0 1197 78.4860 1383 3271 1 chr1B.!!$F1 1888
6 TraesCS3D01G348400 chr1D 32738153 32740044 1891 False 1170.0 1170 78.2220 1383 3271 1 chr1D.!!$F1 1888
7 TraesCS3D01G348400 chr1A 31252420 31254298 1878 True 1105.0 1105 77.6380 1403 3275 1 chr1A.!!$R1 1872
8 TraesCS3D01G348400 chr4B 428845424 428847335 1911 False 1066.0 1066 77.2890 1394 3269 1 chr4B.!!$F1 1875
9 TraesCS3D01G348400 chr4A 116850266 116852177 1911 True 994.0 994 76.6170 1394 3269 1 chr4A.!!$R1 1875
10 TraesCS3D01G348400 chr5A 96983793 96985634 1841 False 992.0 992 76.7520 1403 3262 1 chr5A.!!$F1 1859
11 TraesCS3D01G348400 chr4D 348698405 348700165 1760 False 966.0 966 77.0530 1538 3271 1 chr4D.!!$F1 1733
12 TraesCS3D01G348400 chr4D 348564325 348566205 1880 False 569.5 675 79.1045 1425 3269 2 chr4D.!!$F2 1844

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
287 291 0.802494 GCATCAACCCAGTACAACGG 59.198 55.000 0.00 0.0 0.00 4.44 F
300 304 0.958822 ACAACGGAGGCAACCAAATC 59.041 50.000 2.06 0.0 37.17 2.17 F
442 658 1.165270 GTACATGTGCACCCAGGTTC 58.835 55.000 15.69 0.0 30.99 3.62 F
1602 1898 1.444895 GTCCATGTCCGCGTACGTT 60.445 57.895 17.90 0.0 37.70 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1479 1775 1.375908 GATGAGCGTGGACTTGCCA 60.376 57.895 0.00 0.0 46.96 4.92 R
1752 2048 1.410737 CGTCGCCGATGATCGTGTTT 61.411 55.000 14.27 0.0 38.40 2.83 R
1758 2054 2.049985 CCCTCGTCGCCGATGATC 60.050 66.667 9.80 0.0 43.27 2.92 R
3533 3910 2.223144 GCAGCACTACGTCATTTCACAA 59.777 45.455 0.00 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.810959 AGAAGCAGCAGCAGAAGAAG 58.189 50.000 3.17 0.00 45.49 2.85
20 21 1.347050 AGAAGCAGCAGCAGAAGAAGA 59.653 47.619 3.17 0.00 45.49 2.87
21 22 2.149578 GAAGCAGCAGCAGAAGAAGAA 58.850 47.619 3.17 0.00 45.49 2.52
22 23 2.267174 AGCAGCAGCAGAAGAAGAAA 57.733 45.000 3.17 0.00 45.49 2.52
23 24 1.878734 AGCAGCAGCAGAAGAAGAAAC 59.121 47.619 3.17 0.00 45.49 2.78
24 25 1.605710 GCAGCAGCAGAAGAAGAAACA 59.394 47.619 0.00 0.00 41.58 2.83
25 26 2.033801 GCAGCAGCAGAAGAAGAAACAA 59.966 45.455 0.00 0.00 41.58 2.83
26 27 3.625938 CAGCAGCAGAAGAAGAAACAAC 58.374 45.455 0.00 0.00 0.00 3.32
27 28 3.065786 CAGCAGCAGAAGAAGAAACAACA 59.934 43.478 0.00 0.00 0.00 3.33
28 29 3.696051 AGCAGCAGAAGAAGAAACAACAA 59.304 39.130 0.00 0.00 0.00 2.83
29 30 3.793492 GCAGCAGAAGAAGAAACAACAAC 59.207 43.478 0.00 0.00 0.00 3.32
30 31 4.675146 GCAGCAGAAGAAGAAACAACAACA 60.675 41.667 0.00 0.00 0.00 3.33
31 32 5.401550 CAGCAGAAGAAGAAACAACAACAA 58.598 37.500 0.00 0.00 0.00 2.83
32 33 6.038356 CAGCAGAAGAAGAAACAACAACAAT 58.962 36.000 0.00 0.00 0.00 2.71
54 55 9.705290 ACAATAGAAGAAGAAGAAGAAGAAGAC 57.295 33.333 0.00 0.00 0.00 3.01
57 58 6.443792 AGAAGAAGAAGAAGAAGAAGACGAC 58.556 40.000 0.00 0.00 0.00 4.34
59 60 4.276431 AGAAGAAGAAGAAGAAGACGACGT 59.724 41.667 0.00 0.00 0.00 4.34
81 82 2.829094 TGGAGTTCCACCGAGTTCA 58.171 52.632 0.00 0.00 42.01 3.18
105 106 3.615592 CGTCGATGAACTTTCCCCTGTTA 60.616 47.826 0.00 0.00 0.00 2.41
174 176 3.255642 TGAACTGCCATTTGTTTCCTAGC 59.744 43.478 0.00 0.00 0.00 3.42
203 206 8.020819 GGAAAGAAACGATGTTTCAATCATGTA 58.979 33.333 20.71 0.00 41.76 2.29
206 209 8.267620 AGAAACGATGTTTCAATCATGTATGA 57.732 30.769 20.71 0.00 41.70 2.15
231 234 4.597004 AGGTCATCACTAGTAAGAACGGA 58.403 43.478 0.00 0.00 0.00 4.69
242 245 6.827251 ACTAGTAAGAACGGATGATCACACTA 59.173 38.462 0.00 0.00 0.00 2.74
245 248 4.801330 AGAACGGATGATCACACTACAA 57.199 40.909 0.00 0.00 0.00 2.41
286 290 1.196808 GTGCATCAACCCAGTACAACG 59.803 52.381 0.00 0.00 0.00 4.10
287 291 0.802494 GCATCAACCCAGTACAACGG 59.198 55.000 0.00 0.00 0.00 4.44
300 304 0.958822 ACAACGGAGGCAACCAAATC 59.041 50.000 2.06 0.00 37.17 2.17
340 349 5.165961 TGAAAGTCATCCCTTCTCGAAAT 57.834 39.130 0.00 0.00 0.00 2.17
350 359 8.044309 TCATCCCTTCTCGAAATTTTACACATA 58.956 33.333 0.00 0.00 0.00 2.29
353 362 9.238368 TCCCTTCTCGAAATTTTACACATAAAT 57.762 29.630 0.00 0.00 30.33 1.40
442 658 1.165270 GTACATGTGCACCCAGGTTC 58.835 55.000 15.69 0.00 30.99 3.62
462 678 2.629137 TCCATTGGTCAATATGCCATGC 59.371 45.455 1.86 0.00 34.37 4.06
479 695 5.046014 TGCCATGCTTAATAACCCACAAAAT 60.046 36.000 0.00 0.00 0.00 1.82
535 752 8.940397 TTCTCTCCCTAAATCTCAATTGTTTT 57.060 30.769 5.13 7.09 0.00 2.43
568 814 8.576936 TGTTCAAAAAGTTTAGTTCGTTTGTT 57.423 26.923 0.00 0.00 0.00 2.83
596 842 1.821061 AACTCTCCGCTCCTGTGTGG 61.821 60.000 0.00 0.00 38.85 4.17
832 1121 4.101448 CTCCCAGCCCCGGACAAG 62.101 72.222 0.73 0.00 0.00 3.16
1235 1528 2.202690 CGACAGTAATGCGGGCGA 60.203 61.111 0.00 0.00 46.80 5.54
1602 1898 1.444895 GTCCATGTCCGCGTACGTT 60.445 57.895 17.90 0.00 37.70 3.99
3352 3717 7.281098 AGAAGATGATGACATGATTAAGCAGT 58.719 34.615 0.00 0.00 36.82 4.40
3403 3771 6.200665 TGCAATTGTTAAACAGATGTGCTTTC 59.799 34.615 7.40 0.00 0.00 2.62
3410 3778 3.393089 ACAGATGTGCTTTCGACTTCT 57.607 42.857 0.00 0.00 0.00 2.85
3442 3810 8.383318 TCTTTACTTTTCTTCTCCTTGTGATG 57.617 34.615 0.00 0.00 0.00 3.07
3524 3894 7.224557 CCCTTTTTGTTCCTTTTTCATAGTGTG 59.775 37.037 0.00 0.00 0.00 3.82
3533 3910 7.506114 TCCTTTTTCATAGTGTGTTGTAGACT 58.494 34.615 0.00 0.00 36.73 3.24
3583 3960 4.187694 TGTTCCAAAATGCTTGTCCAAAC 58.812 39.130 0.00 0.00 0.00 2.93
3612 3989 3.648339 AAACAAACGCAATCTGATGCT 57.352 38.095 9.33 0.00 44.21 3.79
3681 4061 2.817258 CCCGCTTCACTTTATTTGGTGA 59.183 45.455 0.00 0.00 40.17 4.02
3701 4081 4.520492 GTGAGATGTGGTTTGGAACTTCAT 59.480 41.667 0.00 0.00 0.00 2.57
3735 4115 1.011242 CGTGTTGTTCACTGGTGCG 60.011 57.895 0.00 0.00 44.16 5.34
3736 4116 1.425267 CGTGTTGTTCACTGGTGCGA 61.425 55.000 0.00 0.00 44.16 5.10
3742 4122 1.403679 TGTTCACTGGTGCGAAAAAGG 59.596 47.619 0.00 0.00 0.00 3.11
3743 4123 1.404035 GTTCACTGGTGCGAAAAAGGT 59.596 47.619 0.00 0.00 0.00 3.50
3744 4124 1.757682 TCACTGGTGCGAAAAAGGTT 58.242 45.000 0.00 0.00 0.00 3.50
3745 4125 1.403679 TCACTGGTGCGAAAAAGGTTG 59.596 47.619 0.00 0.00 0.00 3.77
3747 4127 1.676006 ACTGGTGCGAAAAAGGTTGAG 59.324 47.619 0.00 0.00 0.00 3.02
3749 4129 0.313987 GGTGCGAAAAAGGTTGAGGG 59.686 55.000 0.00 0.00 0.00 4.30
3750 4130 1.029681 GTGCGAAAAAGGTTGAGGGT 58.970 50.000 0.00 0.00 0.00 4.34
3763 4143 6.910259 AGGTTGAGGGTTTCCTTCTTATAT 57.090 37.500 0.10 0.00 45.05 0.86
3785 4165 8.942338 ATATACACTGAAACGAATAAAGCAGA 57.058 30.769 0.00 0.00 0.00 4.26
3787 4167 6.560253 ACACTGAAACGAATAAAGCAGAAT 57.440 33.333 0.00 0.00 0.00 2.40
3795 4175 5.954335 ACGAATAAAGCAGAATCCCTTTTG 58.046 37.500 0.00 0.00 33.64 2.44
3796 4176 5.710099 ACGAATAAAGCAGAATCCCTTTTGA 59.290 36.000 0.00 0.00 33.64 2.69
3799 4179 7.598493 CGAATAAAGCAGAATCCCTTTTGAAAA 59.402 33.333 2.60 0.00 33.64 2.29
3800 4180 9.440773 GAATAAAGCAGAATCCCTTTTGAAAAT 57.559 29.630 2.60 0.00 33.64 1.82
3801 4181 9.440773 AATAAAGCAGAATCCCTTTTGAAAATC 57.559 29.630 2.60 0.00 33.64 2.17
3802 4182 6.676990 AAGCAGAATCCCTTTTGAAAATCT 57.323 33.333 0.00 0.00 0.00 2.40
3803 4183 6.676990 AGCAGAATCCCTTTTGAAAATCTT 57.323 33.333 0.00 0.00 0.00 2.40
3804 4184 7.071069 AGCAGAATCCCTTTTGAAAATCTTT 57.929 32.000 0.00 0.00 0.00 2.52
3805 4185 8.193953 AGCAGAATCCCTTTTGAAAATCTTTA 57.806 30.769 0.00 0.00 0.00 1.85
3806 4186 8.819845 AGCAGAATCCCTTTTGAAAATCTTTAT 58.180 29.630 0.00 0.00 0.00 1.40
3820 4200 9.725019 TGAAAATCTTTATAAGAAGAGAGCACA 57.275 29.630 0.00 0.00 41.63 4.57
3824 4204 9.732130 AATCTTTATAAGAAGAGAGCACAAACT 57.268 29.630 0.00 0.00 41.63 2.66
3825 4205 9.732130 ATCTTTATAAGAAGAGAGCACAAACTT 57.268 29.630 0.00 0.00 41.63 2.66
3826 4206 8.993121 TCTTTATAAGAAGAGAGCACAAACTTG 58.007 33.333 0.00 0.00 33.83 3.16
3827 4207 8.677148 TTTATAAGAAGAGAGCACAAACTTGT 57.323 30.769 0.00 0.00 43.36 3.16
3839 4219 4.297299 ACAAACTTGTGCTGTTCTCATG 57.703 40.909 0.00 0.00 40.49 3.07
3840 4220 3.947196 ACAAACTTGTGCTGTTCTCATGA 59.053 39.130 0.00 0.00 40.49 3.07
3841 4221 4.036027 ACAAACTTGTGCTGTTCTCATGAG 59.964 41.667 17.07 17.07 40.49 2.90
3842 4222 3.758755 ACTTGTGCTGTTCTCATGAGA 57.241 42.857 21.67 21.67 35.27 3.27
3843 4223 4.283363 ACTTGTGCTGTTCTCATGAGAT 57.717 40.909 25.64 4.30 37.29 2.75
3844 4224 4.649692 ACTTGTGCTGTTCTCATGAGATT 58.350 39.130 25.64 0.00 37.29 2.40
3845 4225 5.798132 ACTTGTGCTGTTCTCATGAGATTA 58.202 37.500 25.64 16.02 37.29 1.75
3846 4226 6.413052 ACTTGTGCTGTTCTCATGAGATTAT 58.587 36.000 25.64 0.00 37.29 1.28
3847 4227 6.315642 ACTTGTGCTGTTCTCATGAGATTATG 59.684 38.462 25.64 16.19 37.29 1.90
3848 4228 5.737860 TGTGCTGTTCTCATGAGATTATGT 58.262 37.500 25.64 0.00 37.29 2.29
3849 4229 6.175471 TGTGCTGTTCTCATGAGATTATGTT 58.825 36.000 25.64 0.00 37.29 2.71
3850 4230 6.314648 TGTGCTGTTCTCATGAGATTATGTTC 59.685 38.462 25.64 13.70 37.29 3.18
3851 4231 5.819379 TGCTGTTCTCATGAGATTATGTTCC 59.181 40.000 25.64 9.72 37.29 3.62
3852 4232 6.054295 GCTGTTCTCATGAGATTATGTTCCT 58.946 40.000 25.64 0.00 37.29 3.36
3853 4233 6.541641 GCTGTTCTCATGAGATTATGTTCCTT 59.458 38.462 25.64 0.00 37.29 3.36
3854 4234 7.066766 GCTGTTCTCATGAGATTATGTTCCTTT 59.933 37.037 25.64 0.00 37.29 3.11
3855 4235 9.605275 CTGTTCTCATGAGATTATGTTCCTTTA 57.395 33.333 25.64 3.56 37.29 1.85
3884 4264 7.439381 TGTTCTTACACTAGTAGAAAACAGGG 58.561 38.462 3.59 0.00 30.79 4.45
3885 4265 6.034161 TCTTACACTAGTAGAAAACAGGGC 57.966 41.667 3.59 0.00 0.00 5.19
3886 4266 5.778750 TCTTACACTAGTAGAAAACAGGGCT 59.221 40.000 3.59 0.00 0.00 5.19
3887 4267 4.976540 ACACTAGTAGAAAACAGGGCTT 57.023 40.909 3.59 0.00 0.00 4.35
3888 4268 5.306114 ACACTAGTAGAAAACAGGGCTTT 57.694 39.130 3.59 0.00 0.00 3.51
3889 4269 5.306394 ACACTAGTAGAAAACAGGGCTTTC 58.694 41.667 3.59 0.00 33.75 2.62
3890 4270 4.389077 CACTAGTAGAAAACAGGGCTTTCG 59.611 45.833 3.59 0.00 37.76 3.46
3891 4271 3.487120 AGTAGAAAACAGGGCTTTCGT 57.513 42.857 0.00 0.00 37.76 3.85
3892 4272 3.816994 AGTAGAAAACAGGGCTTTCGTT 58.183 40.909 0.00 0.00 37.76 3.85
3893 4273 4.204799 AGTAGAAAACAGGGCTTTCGTTT 58.795 39.130 0.00 0.00 37.76 3.60
3894 4274 3.436700 AGAAAACAGGGCTTTCGTTTG 57.563 42.857 0.00 0.00 37.76 2.93
3895 4275 2.100749 AGAAAACAGGGCTTTCGTTTGG 59.899 45.455 0.00 0.00 37.76 3.28
3896 4276 0.750249 AAACAGGGCTTTCGTTTGGG 59.250 50.000 0.00 0.00 31.87 4.12
3897 4277 1.744320 AACAGGGCTTTCGTTTGGGC 61.744 55.000 0.00 0.00 0.00 5.36
3898 4278 2.197324 AGGGCTTTCGTTTGGGCA 59.803 55.556 0.00 0.00 0.00 5.36
3899 4279 1.228862 AGGGCTTTCGTTTGGGCAT 60.229 52.632 0.00 0.00 0.00 4.40
3900 4280 1.079888 GGGCTTTCGTTTGGGCATG 60.080 57.895 0.00 0.00 0.00 4.06
3901 4281 1.079888 GGCTTTCGTTTGGGCATGG 60.080 57.895 0.00 0.00 0.00 3.66
3902 4282 1.737735 GCTTTCGTTTGGGCATGGC 60.738 57.895 11.56 11.56 0.00 4.40
3903 4283 1.664873 CTTTCGTTTGGGCATGGCA 59.335 52.632 22.06 4.40 0.00 4.92
3904 4284 0.033228 CTTTCGTTTGGGCATGGCAA 59.967 50.000 22.06 7.00 0.00 4.52
3905 4285 0.033228 TTTCGTTTGGGCATGGCAAG 59.967 50.000 22.06 3.08 0.00 4.01
3906 4286 2.432972 CGTTTGGGCATGGCAAGC 60.433 61.111 22.06 6.08 0.00 4.01
3916 4296 4.635769 TGGCAAGCCCATTAGTCG 57.364 55.556 8.89 0.00 39.18 4.18
3917 4297 1.748879 TGGCAAGCCCATTAGTCGC 60.749 57.895 8.89 0.00 39.18 5.19
3918 4298 2.709475 GCAAGCCCATTAGTCGCG 59.291 61.111 0.00 0.00 0.00 5.87
3919 4299 2.823829 GCAAGCCCATTAGTCGCGG 61.824 63.158 6.13 0.00 0.00 6.46
3920 4300 1.449601 CAAGCCCATTAGTCGCGGT 60.450 57.895 6.13 0.00 0.00 5.68
3921 4301 1.024579 CAAGCCCATTAGTCGCGGTT 61.025 55.000 6.13 0.00 0.00 4.44
3922 4302 0.743345 AAGCCCATTAGTCGCGGTTC 60.743 55.000 6.13 0.00 0.00 3.62
3923 4303 1.448893 GCCCATTAGTCGCGGTTCA 60.449 57.895 6.13 0.00 0.00 3.18
3924 4304 1.429148 GCCCATTAGTCGCGGTTCAG 61.429 60.000 6.13 0.00 0.00 3.02
3925 4305 0.108329 CCCATTAGTCGCGGTTCAGT 60.108 55.000 6.13 0.00 0.00 3.41
3926 4306 1.278238 CCATTAGTCGCGGTTCAGTC 58.722 55.000 6.13 0.00 0.00 3.51
3927 4307 1.403647 CCATTAGTCGCGGTTCAGTCA 60.404 52.381 6.13 0.00 0.00 3.41
3928 4308 1.654105 CATTAGTCGCGGTTCAGTCAC 59.346 52.381 6.13 0.00 0.00 3.67
3929 4309 0.386352 TTAGTCGCGGTTCAGTCACG 60.386 55.000 6.13 0.00 0.00 4.35
3930 4310 1.229975 TAGTCGCGGTTCAGTCACGA 61.230 55.000 6.13 0.00 0.00 4.35
3931 4311 1.659335 GTCGCGGTTCAGTCACGAA 60.659 57.895 6.13 0.00 34.12 3.85
3932 4312 1.659335 TCGCGGTTCAGTCACGAAC 60.659 57.895 6.13 4.51 43.75 3.95
3936 4316 3.946907 GTTCAGTCACGAACCGGG 58.053 61.111 6.32 0.00 39.52 5.73
3937 4317 1.364901 GTTCAGTCACGAACCGGGA 59.635 57.895 6.32 0.00 39.52 5.14
3942 4322 2.605295 TCACGAACCGGGACCCAT 60.605 61.111 12.15 0.00 32.99 4.00
3943 4323 2.435938 CACGAACCGGGACCCATG 60.436 66.667 12.15 3.12 28.17 3.66
3944 4324 3.712907 ACGAACCGGGACCCATGG 61.713 66.667 12.15 4.14 0.00 3.66
3945 4325 4.483243 CGAACCGGGACCCATGGG 62.483 72.222 30.23 30.23 42.03 4.00
3955 4335 2.519302 CCCATGGGGCATTCGTCC 60.519 66.667 24.53 0.00 35.35 4.79
3961 4341 2.822701 GGGCATTCGTCCCGGTTC 60.823 66.667 0.00 0.00 33.43 3.62
3962 4342 3.192922 GGCATTCGTCCCGGTTCG 61.193 66.667 0.00 4.79 0.00 3.95
3963 4343 2.433664 GCATTCGTCCCGGTTCGT 60.434 61.111 13.60 0.00 0.00 3.85
3964 4344 2.736682 GCATTCGTCCCGGTTCGTG 61.737 63.158 13.60 8.10 0.00 4.35
3965 4345 1.080366 CATTCGTCCCGGTTCGTGA 60.080 57.895 13.60 6.24 0.00 4.35
3966 4346 1.076533 CATTCGTCCCGGTTCGTGAG 61.077 60.000 13.60 3.53 0.00 3.51
3967 4347 2.830704 ATTCGTCCCGGTTCGTGAGC 62.831 60.000 13.60 0.00 0.00 4.26
3969 4349 4.754667 GTCCCGGTTCGTGAGCCC 62.755 72.222 0.00 0.00 0.00 5.19
4002 4382 2.438434 CCTCGTGGGCATTGGTCC 60.438 66.667 0.00 0.00 40.08 4.46
4003 4383 2.438434 CTCGTGGGCATTGGTCCC 60.438 66.667 0.00 0.00 44.17 4.46
4004 4384 4.402528 TCGTGGGCATTGGTCCCG 62.403 66.667 0.00 0.00 46.92 5.14
4006 4386 4.360405 GTGGGCATTGGTCCCGGT 62.360 66.667 0.00 0.00 46.92 5.28
4007 4387 3.585428 TGGGCATTGGTCCCGGTT 61.585 61.111 0.00 0.00 46.92 4.44
4008 4388 2.754254 GGGCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 33.43 3.62
4009 4389 3.131478 GGCATTGGTCCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
4010 4390 2.046700 GCATTGGTCCCGGTTCGA 60.047 61.111 0.00 0.00 0.00 3.71
4011 4391 2.106683 GCATTGGTCCCGGTTCGAG 61.107 63.158 0.00 0.00 0.00 4.04
4012 4392 1.449601 CATTGGTCCCGGTTCGAGG 60.450 63.158 0.00 0.00 0.00 4.63
4013 4393 3.325201 ATTGGTCCCGGTTCGAGGC 62.325 63.158 0.00 0.00 0.00 4.70
4015 4395 4.754667 GGTCCCGGTTCGAGGCAC 62.755 72.222 0.00 0.00 0.00 5.01
4028 4408 2.658422 GGCACGAACCGGGACTAA 59.342 61.111 6.32 0.00 34.24 2.24
4029 4409 1.219935 GGCACGAACCGGGACTAAT 59.780 57.895 6.32 0.00 34.24 1.73
4030 4410 1.087771 GGCACGAACCGGGACTAATG 61.088 60.000 6.32 0.00 34.24 1.90
4031 4411 1.087771 GCACGAACCGGGACTAATGG 61.088 60.000 6.32 0.00 28.17 3.16
4032 4412 0.461339 CACGAACCGGGACTAATGGG 60.461 60.000 6.32 0.00 28.17 4.00
4033 4413 1.523032 CGAACCGGGACTAATGGGC 60.523 63.158 6.32 0.00 0.00 5.36
4034 4414 1.153025 GAACCGGGACTAATGGGCC 60.153 63.158 6.32 0.00 44.23 5.80
4035 4415 1.618447 AACCGGGACTAATGGGCCT 60.618 57.895 6.32 0.00 44.42 5.19
4036 4416 1.632965 AACCGGGACTAATGGGCCTC 61.633 60.000 6.32 0.00 44.42 4.70
4037 4417 2.421739 CGGGACTAATGGGCCTCG 59.578 66.667 4.53 0.00 44.42 4.63
4038 4418 2.111251 GGGACTAATGGGCCTCGC 59.889 66.667 4.53 0.00 44.42 5.03
4039 4419 2.444256 GGGACTAATGGGCCTCGCT 61.444 63.158 4.53 0.00 44.42 4.93
4040 4420 1.069935 GGACTAATGGGCCTCGCTC 59.930 63.158 4.53 0.00 40.87 5.03
4041 4421 1.069935 GACTAATGGGCCTCGCTCC 59.930 63.158 4.53 0.00 0.00 4.70
4042 4422 1.383248 ACTAATGGGCCTCGCTCCT 60.383 57.895 4.53 0.00 0.00 3.69
4043 4423 1.070445 CTAATGGGCCTCGCTCCTG 59.930 63.158 4.53 0.00 0.00 3.86
4044 4424 2.388890 CTAATGGGCCTCGCTCCTGG 62.389 65.000 4.53 0.00 0.00 4.45
4051 4431 4.020617 CTCGCTCCTGGCCCACAA 62.021 66.667 0.00 0.00 37.74 3.33
4052 4432 4.329545 TCGCTCCTGGCCCACAAC 62.330 66.667 0.00 0.00 37.74 3.32
4054 4434 4.284550 GCTCCTGGCCCACAACCA 62.285 66.667 0.00 0.00 35.40 3.67
4055 4435 2.765969 CTCCTGGCCCACAACCAT 59.234 61.111 0.00 0.00 36.36 3.55
4056 4436 1.077265 CTCCTGGCCCACAACCATT 59.923 57.895 0.00 0.00 36.36 3.16
4057 4437 1.228831 TCCTGGCCCACAACCATTG 60.229 57.895 0.00 0.00 36.36 2.82
4058 4438 2.285024 CCTGGCCCACAACCATTGG 61.285 63.158 0.00 0.00 36.36 3.16
4059 4439 1.533753 CTGGCCCACAACCATTGGT 60.534 57.895 1.37 1.37 36.36 3.67
4060 4440 1.532794 TGGCCCACAACCATTGGTC 60.533 57.895 9.22 0.00 33.12 4.02
4061 4441 2.282783 GGCCCACAACCATTGGTCC 61.283 63.158 9.22 0.71 33.12 4.46
4062 4442 2.282783 GCCCACAACCATTGGTCCC 61.283 63.158 9.22 0.00 33.12 4.46
4063 4443 1.976474 CCCACAACCATTGGTCCCG 60.976 63.158 9.22 3.64 33.12 5.14
4064 4444 1.976474 CCACAACCATTGGTCCCGG 60.976 63.158 9.22 5.92 33.12 5.73
4065 4445 1.228429 CACAACCATTGGTCCCGGT 60.228 57.895 9.22 2.87 33.12 5.28
4066 4446 0.825840 CACAACCATTGGTCCCGGTT 60.826 55.000 9.22 2.36 43.82 4.44
4067 4447 0.538746 ACAACCATTGGTCCCGGTTC 60.539 55.000 9.22 0.00 41.07 3.62
4068 4448 0.251165 CAACCATTGGTCCCGGTTCT 60.251 55.000 9.22 0.00 41.07 3.01
4069 4449 1.003812 CAACCATTGGTCCCGGTTCTA 59.996 52.381 9.22 0.00 41.07 2.10
4070 4450 0.909623 ACCATTGGTCCCGGTTCTAG 59.090 55.000 1.37 0.00 0.00 2.43
4071 4451 0.180406 CCATTGGTCCCGGTTCTAGG 59.820 60.000 0.00 0.00 0.00 3.02
4072 4452 0.463833 CATTGGTCCCGGTTCTAGGC 60.464 60.000 0.00 0.00 0.00 3.93
4073 4453 0.620700 ATTGGTCCCGGTTCTAGGCT 60.621 55.000 0.00 0.00 0.00 4.58
4074 4454 0.838987 TTGGTCCCGGTTCTAGGCTT 60.839 55.000 0.00 0.00 0.00 4.35
4075 4455 1.221021 GGTCCCGGTTCTAGGCTTG 59.779 63.158 0.00 0.00 0.00 4.01
4076 4456 1.262640 GGTCCCGGTTCTAGGCTTGA 61.263 60.000 0.00 0.00 0.00 3.02
4077 4457 0.611714 GTCCCGGTTCTAGGCTTGAA 59.388 55.000 7.31 7.31 0.00 2.69
4078 4458 0.611714 TCCCGGTTCTAGGCTTGAAC 59.388 55.000 26.74 26.74 42.00 3.18
4082 4462 3.154589 GTTCTAGGCTTGAACCGGG 57.845 57.895 25.10 0.00 38.19 5.73
4083 4463 0.611714 GTTCTAGGCTTGAACCGGGA 59.388 55.000 25.10 0.00 38.19 5.14
4084 4464 0.611714 TTCTAGGCTTGAACCGGGAC 59.388 55.000 6.32 0.00 33.69 4.46
4085 4465 0.543410 TCTAGGCTTGAACCGGGACA 60.543 55.000 6.32 1.89 33.69 4.02
4086 4466 0.108138 CTAGGCTTGAACCGGGACAG 60.108 60.000 6.32 0.00 33.69 3.51
4087 4467 0.543410 TAGGCTTGAACCGGGACAGA 60.543 55.000 6.32 0.00 33.69 3.41
4088 4468 1.072505 GGCTTGAACCGGGACAGAA 59.927 57.895 6.32 0.00 0.00 3.02
4089 4469 0.955919 GGCTTGAACCGGGACAGAAG 60.956 60.000 6.32 1.36 0.00 2.85
4090 4470 0.955919 GCTTGAACCGGGACAGAAGG 60.956 60.000 6.32 0.00 0.00 3.46
4091 4471 0.955919 CTTGAACCGGGACAGAAGGC 60.956 60.000 6.32 0.00 0.00 4.35
4092 4472 2.046217 GAACCGGGACAGAAGGCC 60.046 66.667 6.32 0.00 0.00 5.19
4093 4473 3.623703 GAACCGGGACAGAAGGCCC 62.624 68.421 6.32 0.00 41.11 5.80
4097 4477 3.090532 GGGACAGAAGGCCCGGAT 61.091 66.667 0.73 0.00 34.00 4.18
4098 4478 2.680370 GGGACAGAAGGCCCGGATT 61.680 63.158 0.73 0.00 34.00 3.01
4099 4479 1.303282 GGACAGAAGGCCCGGATTT 59.697 57.895 0.73 0.00 0.00 2.17
4100 4480 0.544697 GGACAGAAGGCCCGGATTTA 59.455 55.000 0.73 0.00 0.00 1.40
4101 4481 1.475213 GGACAGAAGGCCCGGATTTAG 60.475 57.143 0.73 0.00 0.00 1.85
4102 4482 1.209747 GACAGAAGGCCCGGATTTAGT 59.790 52.381 0.73 0.00 0.00 2.24
4103 4483 2.433239 GACAGAAGGCCCGGATTTAGTA 59.567 50.000 0.73 0.00 0.00 1.82
4104 4484 2.169978 ACAGAAGGCCCGGATTTAGTAC 59.830 50.000 0.73 0.00 0.00 2.73
4105 4485 1.767088 AGAAGGCCCGGATTTAGTACC 59.233 52.381 0.73 0.00 0.00 3.34
4114 4494 3.636381 CGGATTTAGTACCGGTTCTAGC 58.364 50.000 15.04 10.48 44.59 3.42
4115 4495 3.551659 CGGATTTAGTACCGGTTCTAGCC 60.552 52.174 15.04 17.55 44.59 3.93
4116 4496 3.385755 GGATTTAGTACCGGTTCTAGCCA 59.614 47.826 15.04 5.88 0.00 4.75
4117 4497 3.874392 TTTAGTACCGGTTCTAGCCAC 57.126 47.619 15.04 1.99 0.00 5.01
4118 4498 1.382522 TAGTACCGGTTCTAGCCACG 58.617 55.000 15.04 0.00 0.00 4.94
4119 4499 0.322816 AGTACCGGTTCTAGCCACGA 60.323 55.000 15.04 0.00 0.00 4.35
4120 4500 0.527565 GTACCGGTTCTAGCCACGAA 59.472 55.000 15.04 0.00 0.00 3.85
4121 4501 0.527565 TACCGGTTCTAGCCACGAAC 59.472 55.000 15.04 0.00 39.92 3.95
4124 4504 4.180496 GTTCTAGCCACGAACCGG 57.820 61.111 0.00 0.00 35.81 5.28
4125 4505 1.447314 GTTCTAGCCACGAACCGGG 60.447 63.158 6.32 0.00 35.81 5.73
4126 4506 1.607178 TTCTAGCCACGAACCGGGA 60.607 57.895 6.32 0.00 28.17 5.14
4127 4507 1.880819 TTCTAGCCACGAACCGGGAC 61.881 60.000 6.32 0.00 28.17 4.46
4128 4508 2.601067 TAGCCACGAACCGGGACA 60.601 61.111 6.32 0.00 28.17 4.02
4129 4509 2.162338 CTAGCCACGAACCGGGACAA 62.162 60.000 6.32 0.00 28.17 3.18
4130 4510 1.756408 TAGCCACGAACCGGGACAAA 61.756 55.000 6.32 0.00 28.17 2.83
4131 4511 1.969589 GCCACGAACCGGGACAAAT 60.970 57.895 6.32 0.00 28.17 2.32
4132 4512 1.873165 CCACGAACCGGGACAAATG 59.127 57.895 6.32 0.00 28.17 2.32
4133 4513 0.604243 CCACGAACCGGGACAAATGA 60.604 55.000 6.32 0.00 28.17 2.57
4134 4514 0.796312 CACGAACCGGGACAAATGAG 59.204 55.000 6.32 0.00 28.17 2.90
4135 4515 0.953960 ACGAACCGGGACAAATGAGC 60.954 55.000 6.32 0.00 0.00 4.26
4136 4516 0.673644 CGAACCGGGACAAATGAGCT 60.674 55.000 6.32 0.00 0.00 4.09
4137 4517 0.804989 GAACCGGGACAAATGAGCTG 59.195 55.000 6.32 0.00 0.00 4.24
4138 4518 1.244019 AACCGGGACAAATGAGCTGC 61.244 55.000 6.32 0.00 0.00 5.25
4139 4519 2.409870 CCGGGACAAATGAGCTGCC 61.410 63.158 0.00 0.00 0.00 4.85
4140 4520 1.377725 CGGGACAAATGAGCTGCCT 60.378 57.895 0.00 0.00 0.00 4.75
4141 4521 0.107703 CGGGACAAATGAGCTGCCTA 60.108 55.000 0.00 0.00 0.00 3.93
4142 4522 1.475751 CGGGACAAATGAGCTGCCTAT 60.476 52.381 0.00 0.00 0.00 2.57
4143 4523 2.224281 CGGGACAAATGAGCTGCCTATA 60.224 50.000 0.00 0.00 0.00 1.31
4144 4524 3.557898 CGGGACAAATGAGCTGCCTATAT 60.558 47.826 0.00 0.00 0.00 0.86
4145 4525 4.322725 CGGGACAAATGAGCTGCCTATATA 60.323 45.833 0.00 0.00 0.00 0.86
4146 4526 5.627735 CGGGACAAATGAGCTGCCTATATAT 60.628 44.000 0.00 0.00 0.00 0.86
4147 4527 6.406961 CGGGACAAATGAGCTGCCTATATATA 60.407 42.308 0.00 0.00 0.00 0.86
4148 4528 6.763610 GGGACAAATGAGCTGCCTATATATAC 59.236 42.308 0.00 0.00 0.00 1.47
4149 4529 6.763610 GGACAAATGAGCTGCCTATATATACC 59.236 42.308 0.00 0.00 0.00 2.73
4150 4530 6.653989 ACAAATGAGCTGCCTATATATACCC 58.346 40.000 0.00 0.00 0.00 3.69
4151 4531 5.896073 AATGAGCTGCCTATATATACCCC 57.104 43.478 0.00 0.00 0.00 4.95
4152 4532 4.346478 TGAGCTGCCTATATATACCCCA 57.654 45.455 0.00 0.00 0.00 4.96
4153 4533 4.895836 TGAGCTGCCTATATATACCCCAT 58.104 43.478 0.00 0.00 0.00 4.00
4154 4534 4.901849 TGAGCTGCCTATATATACCCCATC 59.098 45.833 0.00 0.00 0.00 3.51
4155 4535 3.898123 AGCTGCCTATATATACCCCATCG 59.102 47.826 0.00 0.00 0.00 3.84
4156 4536 3.555168 GCTGCCTATATATACCCCATCGC 60.555 52.174 0.00 0.00 0.00 4.58
4157 4537 2.969950 TGCCTATATATACCCCATCGCC 59.030 50.000 0.00 0.00 0.00 5.54
4158 4538 2.029290 GCCTATATATACCCCATCGCCG 60.029 54.545 0.00 0.00 0.00 6.46
4159 4539 2.029290 CCTATATATACCCCATCGCCGC 60.029 54.545 0.00 0.00 0.00 6.53
4160 4540 1.491668 ATATATACCCCATCGCCGCA 58.508 50.000 0.00 0.00 0.00 5.69
4161 4541 0.821517 TATATACCCCATCGCCGCAG 59.178 55.000 0.00 0.00 0.00 5.18
4162 4542 2.521958 ATATACCCCATCGCCGCAGC 62.522 60.000 0.00 0.00 0.00 5.25
4173 4553 4.994471 CCGCAGCACAGCACTCCA 62.994 66.667 0.00 0.00 0.00 3.86
4174 4554 2.974148 CGCAGCACAGCACTCCAA 60.974 61.111 0.00 0.00 0.00 3.53
4175 4555 2.545596 CGCAGCACAGCACTCCAAA 61.546 57.895 0.00 0.00 0.00 3.28
4176 4556 1.285023 GCAGCACAGCACTCCAAAG 59.715 57.895 0.00 0.00 0.00 2.77
4177 4557 1.450531 GCAGCACAGCACTCCAAAGT 61.451 55.000 0.00 0.00 35.60 2.66
4202 4582 4.371975 TTTTTCTGGCCGTCGAGG 57.628 55.556 0.00 0.00 44.97 4.63
4203 4583 1.302192 TTTTTCTGGCCGTCGAGGG 60.302 57.895 19.82 19.82 41.48 4.30
4204 4584 2.741486 TTTTTCTGGCCGTCGAGGGG 62.741 60.000 24.61 11.98 41.48 4.79
4205 4585 4.689549 TTCTGGCCGTCGAGGGGA 62.690 66.667 24.61 11.42 41.48 4.81
4212 4592 3.470888 CGTCGAGGGGAGGGCATT 61.471 66.667 0.00 0.00 0.00 3.56
4213 4593 2.998949 GTCGAGGGGAGGGCATTT 59.001 61.111 0.00 0.00 0.00 2.32
4214 4594 1.452108 GTCGAGGGGAGGGCATTTG 60.452 63.158 0.00 0.00 0.00 2.32
4215 4595 2.124151 CGAGGGGAGGGCATTTGG 60.124 66.667 0.00 0.00 0.00 3.28
4216 4596 2.280079 GAGGGGAGGGCATTTGGG 59.720 66.667 0.00 0.00 0.00 4.12
4217 4597 2.537959 AGGGGAGGGCATTTGGGT 60.538 61.111 0.00 0.00 0.00 4.51
4218 4598 2.364186 GGGGAGGGCATTTGGGTG 60.364 66.667 0.00 0.00 0.00 4.61
4219 4599 3.076916 GGGAGGGCATTTGGGTGC 61.077 66.667 0.00 0.00 44.31 5.01
4220 4600 2.037847 GGAGGGCATTTGGGTGCT 59.962 61.111 0.00 0.00 44.45 4.40
4221 4601 2.054453 GGAGGGCATTTGGGTGCTC 61.054 63.158 0.00 0.00 46.05 4.26
4224 4604 2.799176 GGGCATTTGGGTGCTCTAG 58.201 57.895 0.00 0.00 42.38 2.43
4225 4605 1.387295 GGGCATTTGGGTGCTCTAGC 61.387 60.000 0.00 0.00 42.38 3.42
4226 4606 0.394899 GGCATTTGGGTGCTCTAGCT 60.395 55.000 3.26 0.00 44.45 3.32
4227 4607 1.020437 GCATTTGGGTGCTCTAGCTC 58.980 55.000 3.26 0.00 41.82 4.09
4228 4608 1.679944 GCATTTGGGTGCTCTAGCTCA 60.680 52.381 3.26 0.00 41.82 4.26
4229 4609 2.012673 CATTTGGGTGCTCTAGCTCAC 58.987 52.381 3.26 1.23 42.66 3.51
4233 4613 1.819905 GGTGCTCTAGCTCACCTCC 59.180 63.158 19.69 0.00 46.90 4.30
4234 4614 0.686112 GGTGCTCTAGCTCACCTCCT 60.686 60.000 19.69 0.00 46.90 3.69
4235 4615 1.410365 GGTGCTCTAGCTCACCTCCTA 60.410 57.143 19.69 0.00 46.90 2.94
4236 4616 2.593026 GTGCTCTAGCTCACCTCCTAT 58.407 52.381 3.26 0.00 42.66 2.57
4237 4617 2.295909 GTGCTCTAGCTCACCTCCTATG 59.704 54.545 3.26 0.00 42.66 2.23
4238 4618 1.272212 GCTCTAGCTCACCTCCTATGC 59.728 57.143 0.00 0.00 38.21 3.14
4239 4619 2.591923 CTCTAGCTCACCTCCTATGCA 58.408 52.381 0.00 0.00 0.00 3.96
4240 4620 2.295909 CTCTAGCTCACCTCCTATGCAC 59.704 54.545 0.00 0.00 0.00 4.57
4241 4621 2.034878 CTAGCTCACCTCCTATGCACA 58.965 52.381 0.00 0.00 0.00 4.57
4242 4622 1.504912 AGCTCACCTCCTATGCACAT 58.495 50.000 0.00 0.00 0.00 3.21
4243 4623 1.140452 AGCTCACCTCCTATGCACATG 59.860 52.381 0.00 0.00 0.00 3.21
4244 4624 1.139654 GCTCACCTCCTATGCACATGA 59.860 52.381 0.00 0.00 0.00 3.07
4245 4625 2.806019 GCTCACCTCCTATGCACATGAG 60.806 54.545 0.00 0.00 36.11 2.90
4259 4639 4.952262 CACATGAGGTGTTCGATGAAAT 57.048 40.909 0.00 0.00 42.75 2.17
4260 4640 4.655027 CACATGAGGTGTTCGATGAAATG 58.345 43.478 0.00 0.00 42.75 2.32
4261 4641 4.154737 CACATGAGGTGTTCGATGAAATGT 59.845 41.667 0.00 0.00 42.75 2.71
4262 4642 4.393062 ACATGAGGTGTTCGATGAAATGTC 59.607 41.667 0.00 0.00 38.01 3.06
4263 4643 4.271696 TGAGGTGTTCGATGAAATGTCT 57.728 40.909 0.00 0.00 0.00 3.41
4264 4644 3.996363 TGAGGTGTTCGATGAAATGTCTG 59.004 43.478 0.00 0.00 0.00 3.51
4265 4645 4.245660 GAGGTGTTCGATGAAATGTCTGA 58.754 43.478 0.00 0.00 0.00 3.27
4266 4646 4.248859 AGGTGTTCGATGAAATGTCTGAG 58.751 43.478 0.00 0.00 0.00 3.35
4267 4647 3.181516 GGTGTTCGATGAAATGTCTGAGC 60.182 47.826 0.00 0.00 0.00 4.26
4268 4648 3.002791 TGTTCGATGAAATGTCTGAGCC 58.997 45.455 0.00 0.00 0.00 4.70
4269 4649 3.002791 GTTCGATGAAATGTCTGAGCCA 58.997 45.455 0.00 0.00 0.00 4.75
4270 4650 2.621338 TCGATGAAATGTCTGAGCCAC 58.379 47.619 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.347050 TCTTCTTCTGCTGCTGCTTCT 59.653 47.619 17.00 0.00 40.48 2.85
1 2 1.805869 TCTTCTTCTGCTGCTGCTTC 58.194 50.000 17.00 0.00 40.48 3.86
2 3 2.267174 TTCTTCTTCTGCTGCTGCTT 57.733 45.000 17.00 0.00 40.48 3.91
3 4 1.878734 GTTTCTTCTTCTGCTGCTGCT 59.121 47.619 17.00 0.00 40.48 4.24
4 5 1.605710 TGTTTCTTCTTCTGCTGCTGC 59.394 47.619 8.89 8.89 40.20 5.25
5 6 3.065786 TGTTGTTTCTTCTTCTGCTGCTG 59.934 43.478 0.00 0.00 0.00 4.41
6 7 3.282021 TGTTGTTTCTTCTTCTGCTGCT 58.718 40.909 0.00 0.00 0.00 4.24
7 8 3.698029 TGTTGTTTCTTCTTCTGCTGC 57.302 42.857 0.00 0.00 0.00 5.25
8 9 4.985413 TGTTGTTGTTTCTTCTTCTGCTG 58.015 39.130 0.00 0.00 0.00 4.41
9 10 5.643379 TTGTTGTTGTTTCTTCTTCTGCT 57.357 34.783 0.00 0.00 0.00 4.24
10 11 7.417612 TCTATTGTTGTTGTTTCTTCTTCTGC 58.582 34.615 0.00 0.00 0.00 4.26
11 12 9.443283 CTTCTATTGTTGTTGTTTCTTCTTCTG 57.557 33.333 0.00 0.00 0.00 3.02
12 13 9.396022 TCTTCTATTGTTGTTGTTTCTTCTTCT 57.604 29.630 0.00 0.00 0.00 2.85
15 16 9.396022 TCTTCTTCTATTGTTGTTGTTTCTTCT 57.604 29.630 0.00 0.00 0.00 2.85
18 19 9.396022 TCTTCTTCTTCTATTGTTGTTGTTTCT 57.604 29.630 0.00 0.00 0.00 2.52
21 22 9.396022 TCTTCTTCTTCTTCTATTGTTGTTGTT 57.604 29.630 0.00 0.00 0.00 2.83
22 23 8.964476 TCTTCTTCTTCTTCTATTGTTGTTGT 57.036 30.769 0.00 0.00 0.00 3.32
23 24 9.875675 CTTCTTCTTCTTCTTCTATTGTTGTTG 57.124 33.333 0.00 0.00 0.00 3.33
24 25 9.838339 TCTTCTTCTTCTTCTTCTATTGTTGTT 57.162 29.630 0.00 0.00 0.00 2.83
25 26 9.838339 TTCTTCTTCTTCTTCTTCTATTGTTGT 57.162 29.630 0.00 0.00 0.00 3.32
28 29 9.705290 GTCTTCTTCTTCTTCTTCTTCTATTGT 57.295 33.333 0.00 0.00 0.00 2.71
29 30 8.859156 CGTCTTCTTCTTCTTCTTCTTCTATTG 58.141 37.037 0.00 0.00 0.00 1.90
30 31 8.798402 TCGTCTTCTTCTTCTTCTTCTTCTATT 58.202 33.333 0.00 0.00 0.00 1.73
31 32 8.241367 GTCGTCTTCTTCTTCTTCTTCTTCTAT 58.759 37.037 0.00 0.00 0.00 1.98
32 33 7.571613 CGTCGTCTTCTTCTTCTTCTTCTTCTA 60.572 40.741 0.00 0.00 0.00 2.10
54 55 1.589630 TGGAACTCCATCCACGTCG 59.410 57.895 0.00 0.00 44.52 5.12
81 82 1.346722 AGGGGAAAGTTCATCGACGTT 59.653 47.619 0.00 0.00 0.00 3.99
174 176 7.806690 TGATTGAAACATCGTTTCTTTCCTAG 58.193 34.615 17.70 0.00 0.00 3.02
180 182 8.729756 TCATACATGATTGAAACATCGTTTCTT 58.270 29.630 17.70 7.85 0.00 2.52
206 209 6.832384 TCCGTTCTTACTAGTGATGACCTTAT 59.168 38.462 5.39 0.00 0.00 1.73
224 227 4.495422 GTTGTAGTGTGATCATCCGTTCT 58.505 43.478 0.00 0.00 0.00 3.01
228 231 1.588404 GCGTTGTAGTGTGATCATCCG 59.412 52.381 0.00 0.00 0.00 4.18
231 234 0.999406 GCGCGTTGTAGTGTGATCAT 59.001 50.000 8.43 0.00 0.00 2.45
242 245 1.581657 GACGTTTGTTGCGCGTTGT 60.582 52.632 8.43 0.00 39.06 3.32
245 248 4.287967 CCGACGTTTGTTGCGCGT 62.288 61.111 8.43 0.00 41.81 6.01
281 285 0.958822 GATTTGGTTGCCTCCGTTGT 59.041 50.000 0.00 0.00 0.00 3.32
286 290 0.532115 AATGCGATTTGGTTGCCTCC 59.468 50.000 0.00 0.00 36.30 4.30
287 291 2.368655 AAATGCGATTTGGTTGCCTC 57.631 45.000 0.00 0.00 36.30 4.70
300 304 4.335082 TTCATGGTACTCGAAAAATGCG 57.665 40.909 0.00 0.00 0.00 4.73
442 658 2.631062 AGCATGGCATATTGACCAATGG 59.369 45.455 0.00 0.00 39.96 3.16
462 678 9.184523 TGACAGGATATTTTGTGGGTTATTAAG 57.815 33.333 0.00 0.00 0.00 1.85
479 695 2.816672 TGCAATGCGTTTTGACAGGATA 59.183 40.909 0.00 0.00 0.00 2.59
561 807 6.518736 GCGGAGAGTTATTAGAAAAACAAACG 59.481 38.462 0.00 0.00 0.00 3.60
568 814 5.187186 ACAGGAGCGGAGAGTTATTAGAAAA 59.813 40.000 0.00 0.00 0.00 2.29
576 822 0.888619 CACACAGGAGCGGAGAGTTA 59.111 55.000 0.00 0.00 0.00 2.24
577 823 1.668294 CACACAGGAGCGGAGAGTT 59.332 57.895 0.00 0.00 0.00 3.01
578 824 2.279069 CCACACAGGAGCGGAGAGT 61.279 63.158 0.00 0.00 41.22 3.24
596 842 3.253432 GGTGGTGAGGAAATGTTGACTTC 59.747 47.826 0.00 0.00 0.00 3.01
716 979 4.489771 CGCGCCAGGGGAGGAATT 62.490 66.667 7.95 0.00 0.00 2.17
831 1120 2.288886 GCGAGGTGTGGTTAAGACTTCT 60.289 50.000 0.00 0.00 0.00 2.85
832 1121 2.067013 GCGAGGTGTGGTTAAGACTTC 58.933 52.381 0.00 0.00 0.00 3.01
1479 1775 1.375908 GATGAGCGTGGACTTGCCA 60.376 57.895 0.00 0.00 46.96 4.92
1752 2048 1.410737 CGTCGCCGATGATCGTGTTT 61.411 55.000 14.27 0.00 38.40 2.83
1758 2054 2.049985 CCCTCGTCGCCGATGATC 60.050 66.667 9.80 0.00 43.27 2.92
1986 2282 3.492311 GAGGATGAGGCGGTCGAGC 62.492 68.421 4.06 4.06 0.00 5.03
3352 3717 3.641436 ACCGATAGATGATAGTGTGGCAA 59.359 43.478 0.00 0.00 39.76 4.52
3442 3810 8.587952 AACCACTTAATTATTTGACTTGCAAC 57.412 30.769 0.00 0.00 35.91 4.17
3473 3841 6.656693 GCAGTGGATAGGAAAGCATATGTAAT 59.343 38.462 4.29 0.00 0.00 1.89
3524 3894 5.652744 ACGTCATTTCACAAGTCTACAAC 57.347 39.130 0.00 0.00 0.00 3.32
3533 3910 2.223144 GCAGCACTACGTCATTTCACAA 59.777 45.455 0.00 0.00 0.00 3.33
3583 3960 4.984161 AGATTGCGTTTGTTTTTCATGAGG 59.016 37.500 0.00 0.00 0.00 3.86
3612 3989 7.542477 CACAACACAACAAAACCATGTTACTTA 59.458 33.333 0.00 0.00 41.44 2.24
3681 4061 4.216257 CGAATGAAGTTCCAAACCACATCT 59.784 41.667 0.00 0.00 33.04 2.90
3701 4081 2.103647 ACGGCGCATGCATTACGAA 61.104 52.632 19.57 0.00 45.35 3.85
3735 4115 4.649674 AGAAGGAAACCCTCAACCTTTTTC 59.350 41.667 0.00 0.00 41.90 2.29
3736 4116 4.620723 AGAAGGAAACCCTCAACCTTTTT 58.379 39.130 0.00 0.00 41.90 1.94
3742 4122 8.265764 AGTGTATATAAGAAGGAAACCCTCAAC 58.734 37.037 0.00 0.00 32.44 3.18
3743 4123 8.265055 CAGTGTATATAAGAAGGAAACCCTCAA 58.735 37.037 0.00 0.00 32.44 3.02
3744 4124 7.622081 TCAGTGTATATAAGAAGGAAACCCTCA 59.378 37.037 0.00 0.00 32.44 3.86
3745 4125 8.019656 TCAGTGTATATAAGAAGGAAACCCTC 57.980 38.462 0.00 0.00 32.44 4.30
3747 4127 8.890718 GTTTCAGTGTATATAAGAAGGAAACCC 58.109 37.037 0.00 0.00 36.98 4.11
3749 4129 9.362539 TCGTTTCAGTGTATATAAGAAGGAAAC 57.637 33.333 0.00 0.00 38.61 2.78
3750 4130 9.932207 TTCGTTTCAGTGTATATAAGAAGGAAA 57.068 29.630 0.00 0.00 0.00 3.13
3763 4143 7.148474 GGATTCTGCTTTATTCGTTTCAGTGTA 60.148 37.037 0.00 0.00 0.00 2.90
3799 4179 9.732130 AAGTTTGTGCTCTCTTCTTATAAAGAT 57.268 29.630 0.00 0.00 37.38 2.40
3800 4180 8.993121 CAAGTTTGTGCTCTCTTCTTATAAAGA 58.007 33.333 0.00 0.00 34.22 2.52
3801 4181 8.778358 ACAAGTTTGTGCTCTCTTCTTATAAAG 58.222 33.333 0.00 0.00 40.49 1.85
3802 4182 8.677148 ACAAGTTTGTGCTCTCTTCTTATAAA 57.323 30.769 0.00 0.00 40.49 1.40
3817 4197 8.107283 TCTCATGAGAACAGCACAAGTTTGTG 62.107 42.308 23.17 18.23 46.28 3.33
3818 4198 3.947196 TCATGAGAACAGCACAAGTTTGT 59.053 39.130 0.00 0.00 43.36 2.83
3819 4199 4.274214 TCTCATGAGAACAGCACAAGTTTG 59.726 41.667 23.17 0.00 33.91 2.93
3820 4200 4.454678 TCTCATGAGAACAGCACAAGTTT 58.545 39.130 23.17 0.00 33.91 2.66
3821 4201 4.077300 TCTCATGAGAACAGCACAAGTT 57.923 40.909 23.17 0.00 33.91 2.66
3822 4202 3.758755 TCTCATGAGAACAGCACAAGT 57.241 42.857 23.17 0.00 33.91 3.16
3823 4203 6.315642 ACATAATCTCATGAGAACAGCACAAG 59.684 38.462 28.40 13.54 41.36 3.16
3824 4204 6.175471 ACATAATCTCATGAGAACAGCACAA 58.825 36.000 28.40 8.87 41.36 3.33
3825 4205 5.737860 ACATAATCTCATGAGAACAGCACA 58.262 37.500 28.40 9.53 41.36 4.57
3826 4206 6.238320 GGAACATAATCTCATGAGAACAGCAC 60.238 42.308 28.40 16.17 41.36 4.40
3827 4207 5.819379 GGAACATAATCTCATGAGAACAGCA 59.181 40.000 28.40 12.46 41.36 4.41
3828 4208 6.054295 AGGAACATAATCTCATGAGAACAGC 58.946 40.000 28.40 13.79 41.36 4.40
3829 4209 8.503458 AAAGGAACATAATCTCATGAGAACAG 57.497 34.615 28.40 19.49 41.36 3.16
3858 4238 8.095169 CCCTGTTTTCTACTAGTGTAAGAACAT 58.905 37.037 5.39 0.00 38.08 2.71
3859 4239 7.439381 CCCTGTTTTCTACTAGTGTAAGAACA 58.561 38.462 5.39 9.07 0.00 3.18
3860 4240 6.368243 GCCCTGTTTTCTACTAGTGTAAGAAC 59.632 42.308 5.39 5.04 0.00 3.01
3861 4241 6.269307 AGCCCTGTTTTCTACTAGTGTAAGAA 59.731 38.462 5.39 3.96 0.00 2.52
3862 4242 5.778750 AGCCCTGTTTTCTACTAGTGTAAGA 59.221 40.000 5.39 0.00 0.00 2.10
3863 4243 6.038997 AGCCCTGTTTTCTACTAGTGTAAG 57.961 41.667 5.39 0.00 0.00 2.34
3864 4244 6.429521 AAGCCCTGTTTTCTACTAGTGTAA 57.570 37.500 5.39 0.00 0.00 2.41
3865 4245 6.429521 AAAGCCCTGTTTTCTACTAGTGTA 57.570 37.500 5.39 0.00 0.00 2.90
3866 4246 4.976540 AAGCCCTGTTTTCTACTAGTGT 57.023 40.909 5.39 0.00 0.00 3.55
3867 4247 4.389077 CGAAAGCCCTGTTTTCTACTAGTG 59.611 45.833 5.39 0.00 32.09 2.74
3868 4248 4.040095 ACGAAAGCCCTGTTTTCTACTAGT 59.960 41.667 0.00 0.00 32.09 2.57
3869 4249 4.566987 ACGAAAGCCCTGTTTTCTACTAG 58.433 43.478 0.00 0.00 32.09 2.57
3870 4250 4.612264 ACGAAAGCCCTGTTTTCTACTA 57.388 40.909 0.00 0.00 32.09 1.82
3871 4251 3.487120 ACGAAAGCCCTGTTTTCTACT 57.513 42.857 0.00 0.00 32.09 2.57
3872 4252 4.287720 CAAACGAAAGCCCTGTTTTCTAC 58.712 43.478 0.00 0.00 33.80 2.59
3873 4253 3.316868 CCAAACGAAAGCCCTGTTTTCTA 59.683 43.478 0.00 0.00 33.80 2.10
3874 4254 2.100749 CCAAACGAAAGCCCTGTTTTCT 59.899 45.455 0.00 0.00 33.80 2.52
3875 4255 2.469826 CCAAACGAAAGCCCTGTTTTC 58.530 47.619 0.00 0.00 33.80 2.29
3876 4256 1.138069 CCCAAACGAAAGCCCTGTTTT 59.862 47.619 0.00 0.00 33.80 2.43
3877 4257 0.750249 CCCAAACGAAAGCCCTGTTT 59.250 50.000 0.00 0.00 36.31 2.83
3878 4258 1.744320 GCCCAAACGAAAGCCCTGTT 61.744 55.000 0.00 0.00 0.00 3.16
3879 4259 2.200337 GCCCAAACGAAAGCCCTGT 61.200 57.895 0.00 0.00 0.00 4.00
3880 4260 1.535204 ATGCCCAAACGAAAGCCCTG 61.535 55.000 0.00 0.00 0.00 4.45
3881 4261 1.228862 ATGCCCAAACGAAAGCCCT 60.229 52.632 0.00 0.00 0.00 5.19
3882 4262 1.079888 CATGCCCAAACGAAAGCCC 60.080 57.895 0.00 0.00 0.00 5.19
3883 4263 1.079888 CCATGCCCAAACGAAAGCC 60.080 57.895 0.00 0.00 0.00 4.35
3884 4264 1.737735 GCCATGCCCAAACGAAAGC 60.738 57.895 0.00 0.00 0.00 3.51
3885 4265 0.033228 TTGCCATGCCCAAACGAAAG 59.967 50.000 0.00 0.00 0.00 2.62
3886 4266 0.033228 CTTGCCATGCCCAAACGAAA 59.967 50.000 0.00 0.00 0.00 3.46
3887 4267 1.664873 CTTGCCATGCCCAAACGAA 59.335 52.632 0.00 0.00 0.00 3.85
3888 4268 2.929903 GCTTGCCATGCCCAAACGA 61.930 57.895 0.00 0.00 0.00 3.85
3889 4269 2.432972 GCTTGCCATGCCCAAACG 60.433 61.111 0.00 0.00 0.00 3.60
3890 4270 2.046988 GGCTTGCCATGCCCAAAC 60.047 61.111 10.41 0.00 44.32 2.93
3896 4276 0.386838 GACTAATGGGCTTGCCATGC 59.613 55.000 14.04 0.00 0.00 4.06
3897 4277 0.664761 CGACTAATGGGCTTGCCATG 59.335 55.000 14.04 1.25 0.00 3.66
3898 4278 1.103398 GCGACTAATGGGCTTGCCAT 61.103 55.000 14.04 2.71 0.00 4.40
3899 4279 1.748879 GCGACTAATGGGCTTGCCA 60.749 57.895 14.04 0.31 0.00 4.92
3900 4280 2.823829 CGCGACTAATGGGCTTGCC 61.824 63.158 0.00 2.49 0.00 4.52
3901 4281 2.709475 CGCGACTAATGGGCTTGC 59.291 61.111 0.00 0.00 0.00 4.01
3902 4282 1.024579 AACCGCGACTAATGGGCTTG 61.025 55.000 8.23 0.00 0.00 4.01
3903 4283 0.743345 GAACCGCGACTAATGGGCTT 60.743 55.000 8.23 0.00 0.00 4.35
3904 4284 1.153429 GAACCGCGACTAATGGGCT 60.153 57.895 8.23 0.00 0.00 5.19
3905 4285 1.429148 CTGAACCGCGACTAATGGGC 61.429 60.000 8.23 0.00 0.00 5.36
3906 4286 0.108329 ACTGAACCGCGACTAATGGG 60.108 55.000 8.23 0.00 0.00 4.00
3907 4287 1.278238 GACTGAACCGCGACTAATGG 58.722 55.000 8.23 0.00 0.00 3.16
3908 4288 1.654105 GTGACTGAACCGCGACTAATG 59.346 52.381 8.23 0.00 0.00 1.90
3909 4289 1.731424 CGTGACTGAACCGCGACTAAT 60.731 52.381 8.23 0.00 39.61 1.73
3910 4290 0.386352 CGTGACTGAACCGCGACTAA 60.386 55.000 8.23 0.00 39.61 2.24
3911 4291 1.208358 CGTGACTGAACCGCGACTA 59.792 57.895 8.23 0.00 39.61 2.59
3912 4292 2.050351 CGTGACTGAACCGCGACT 60.050 61.111 8.23 0.00 39.61 4.18
3913 4293 1.659335 TTCGTGACTGAACCGCGAC 60.659 57.895 8.23 0.00 44.68 5.19
3914 4294 1.659335 GTTCGTGACTGAACCGCGA 60.659 57.895 8.23 0.00 41.88 5.87
3915 4295 2.844146 GTTCGTGACTGAACCGCG 59.156 61.111 0.00 0.00 41.88 6.46
3919 4299 0.942884 GTCCCGGTTCGTGACTGAAC 60.943 60.000 0.00 10.38 45.91 3.18
3920 4300 1.364901 GTCCCGGTTCGTGACTGAA 59.635 57.895 0.00 0.00 36.72 3.02
3921 4301 2.567497 GGTCCCGGTTCGTGACTGA 61.567 63.158 0.00 0.00 34.89 3.41
3922 4302 2.048503 GGTCCCGGTTCGTGACTG 60.049 66.667 0.00 0.00 34.89 3.51
3923 4303 3.308705 GGGTCCCGGTTCGTGACT 61.309 66.667 0.00 0.00 34.89 3.41
3924 4304 2.951101 ATGGGTCCCGGTTCGTGAC 61.951 63.158 2.65 0.00 33.83 3.67
3925 4305 2.605295 ATGGGTCCCGGTTCGTGA 60.605 61.111 2.65 0.00 0.00 4.35
3926 4306 2.435938 CATGGGTCCCGGTTCGTG 60.436 66.667 2.65 0.00 0.00 4.35
3927 4307 3.712907 CCATGGGTCCCGGTTCGT 61.713 66.667 2.85 0.00 0.00 3.85
3928 4308 4.483243 CCCATGGGTCCCGGTTCG 62.483 72.222 23.93 0.00 0.00 3.95
3929 4309 4.123545 CCCCATGGGTCCCGGTTC 62.124 72.222 29.33 0.00 38.25 3.62
3933 4313 4.141876 AATGCCCCATGGGTCCCG 62.142 66.667 29.33 14.98 46.51 5.14
3934 4314 2.123295 GAATGCCCCATGGGTCCC 60.123 66.667 29.33 16.98 46.51 4.46
3935 4315 2.519302 CGAATGCCCCATGGGTCC 60.519 66.667 29.33 19.48 46.51 4.46
3936 4316 1.823899 GACGAATGCCCCATGGGTC 60.824 63.158 29.33 18.61 46.51 4.46
3937 4317 2.275418 GACGAATGCCCCATGGGT 59.725 61.111 29.33 11.05 46.51 4.51
3939 4319 2.519302 GGGACGAATGCCCCATGG 60.519 66.667 4.14 4.14 42.24 3.66
3952 4332 4.754667 GGGCTCACGAACCGGGAC 62.755 72.222 6.32 0.00 32.99 4.46
3985 4365 2.438434 GGACCAATGCCCACGAGG 60.438 66.667 0.00 0.00 39.47 4.63
3986 4366 2.438434 GGGACCAATGCCCACGAG 60.438 66.667 0.00 0.00 45.31 4.18
3987 4367 4.402528 CGGGACCAATGCCCACGA 62.403 66.667 0.00 0.00 46.36 4.35
3989 4369 3.879180 AACCGGGACCAATGCCCAC 62.879 63.158 6.32 0.00 46.36 4.61
3990 4370 3.577334 GAACCGGGACCAATGCCCA 62.577 63.158 6.32 0.00 46.36 5.36
3991 4371 2.754254 GAACCGGGACCAATGCCC 60.754 66.667 6.32 0.00 42.41 5.36
3992 4372 3.131478 CGAACCGGGACCAATGCC 61.131 66.667 6.32 0.00 0.00 4.40
3993 4373 2.046700 TCGAACCGGGACCAATGC 60.047 61.111 6.32 0.00 0.00 3.56
3994 4374 1.449601 CCTCGAACCGGGACCAATG 60.450 63.158 6.32 0.00 0.00 2.82
3995 4375 2.987125 CCTCGAACCGGGACCAAT 59.013 61.111 6.32 0.00 0.00 3.16
3996 4376 4.011517 GCCTCGAACCGGGACCAA 62.012 66.667 6.32 0.00 0.00 3.67
3998 4378 4.754667 GTGCCTCGAACCGGGACC 62.755 72.222 6.32 0.00 36.95 4.46
4009 4389 1.880819 TTAGTCCCGGTTCGTGCCTC 61.881 60.000 0.00 0.00 0.00 4.70
4010 4390 1.262640 ATTAGTCCCGGTTCGTGCCT 61.263 55.000 0.00 0.00 0.00 4.75
4011 4391 1.087771 CATTAGTCCCGGTTCGTGCC 61.088 60.000 0.00 0.00 0.00 5.01
4012 4392 1.087771 CCATTAGTCCCGGTTCGTGC 61.088 60.000 0.00 0.00 0.00 5.34
4013 4393 0.461339 CCCATTAGTCCCGGTTCGTG 60.461 60.000 0.00 0.00 0.00 4.35
4014 4394 1.902556 CCCATTAGTCCCGGTTCGT 59.097 57.895 0.00 0.00 0.00 3.85
4015 4395 1.523032 GCCCATTAGTCCCGGTTCG 60.523 63.158 0.00 0.00 0.00 3.95
4016 4396 1.153025 GGCCCATTAGTCCCGGTTC 60.153 63.158 0.00 0.00 0.00 3.62
4017 4397 1.618447 AGGCCCATTAGTCCCGGTT 60.618 57.895 0.00 0.00 0.00 4.44
4018 4398 2.042261 AGGCCCATTAGTCCCGGT 59.958 61.111 0.00 0.00 0.00 5.28
4019 4399 2.829592 GAGGCCCATTAGTCCCGG 59.170 66.667 0.00 0.00 0.00 5.73
4020 4400 2.421739 CGAGGCCCATTAGTCCCG 59.578 66.667 0.00 0.00 0.00 5.14
4021 4401 2.111251 GCGAGGCCCATTAGTCCC 59.889 66.667 0.00 0.00 0.00 4.46
4022 4402 1.069935 GAGCGAGGCCCATTAGTCC 59.930 63.158 0.00 0.00 0.00 3.85
4023 4403 1.069935 GGAGCGAGGCCCATTAGTC 59.930 63.158 0.00 0.00 0.00 2.59
4024 4404 1.383248 AGGAGCGAGGCCCATTAGT 60.383 57.895 0.00 0.00 0.00 2.24
4025 4405 1.070445 CAGGAGCGAGGCCCATTAG 59.930 63.158 0.00 0.00 0.00 1.73
4026 4406 2.443394 CCAGGAGCGAGGCCCATTA 61.443 63.158 0.00 0.00 0.00 1.90
4027 4407 3.801997 CCAGGAGCGAGGCCCATT 61.802 66.667 0.00 0.00 0.00 3.16
4034 4414 4.020617 TTGTGGGCCAGGAGCGAG 62.021 66.667 6.40 0.00 45.17 5.03
4035 4415 4.329545 GTTGTGGGCCAGGAGCGA 62.330 66.667 6.40 0.00 45.17 4.93
4037 4417 3.590466 ATGGTTGTGGGCCAGGAGC 62.590 63.158 6.40 9.05 39.65 4.70
4038 4418 1.077265 AATGGTTGTGGGCCAGGAG 59.923 57.895 6.40 0.00 39.65 3.69
4039 4419 1.228831 CAATGGTTGTGGGCCAGGA 60.229 57.895 6.40 0.00 39.65 3.86
4040 4420 2.285024 CCAATGGTTGTGGGCCAGG 61.285 63.158 6.40 0.00 39.65 4.45
4041 4421 1.533753 ACCAATGGTTGTGGGCCAG 60.534 57.895 6.40 0.00 40.75 4.85
4042 4422 1.532794 GACCAATGGTTGTGGGCCA 60.533 57.895 6.30 0.00 38.35 5.36
4043 4423 3.376546 GACCAATGGTTGTGGGCC 58.623 61.111 6.30 0.00 38.35 5.80
4044 4424 2.282783 GGGACCAATGGTTGTGGGC 61.283 63.158 6.30 0.00 44.26 5.36
4045 4425 1.976474 CGGGACCAATGGTTGTGGG 60.976 63.158 6.30 0.00 40.75 4.61
4046 4426 1.976474 CCGGGACCAATGGTTGTGG 60.976 63.158 6.30 4.83 42.28 4.17
4047 4427 0.825840 AACCGGGACCAATGGTTGTG 60.826 55.000 6.30 0.00 44.05 3.33
4048 4428 0.538746 GAACCGGGACCAATGGTTGT 60.539 55.000 17.01 0.00 45.63 3.32
4049 4429 0.251165 AGAACCGGGACCAATGGTTG 60.251 55.000 17.01 0.00 45.63 3.77
4051 4431 0.909623 CTAGAACCGGGACCAATGGT 59.090 55.000 3.74 3.74 39.44 3.55
4052 4432 0.180406 CCTAGAACCGGGACCAATGG 59.820 60.000 6.32 0.00 0.00 3.16
4053 4433 0.463833 GCCTAGAACCGGGACCAATG 60.464 60.000 6.32 0.00 0.00 2.82
4054 4434 0.620700 AGCCTAGAACCGGGACCAAT 60.621 55.000 6.32 0.00 0.00 3.16
4055 4435 0.838987 AAGCCTAGAACCGGGACCAA 60.839 55.000 6.32 0.00 0.00 3.67
4056 4436 1.229400 AAGCCTAGAACCGGGACCA 60.229 57.895 6.32 0.00 0.00 4.02
4057 4437 1.221021 CAAGCCTAGAACCGGGACC 59.779 63.158 6.32 0.00 0.00 4.46
4058 4438 0.611714 TTCAAGCCTAGAACCGGGAC 59.388 55.000 6.32 0.00 0.00 4.46
4059 4439 0.611714 GTTCAAGCCTAGAACCGGGA 59.388 55.000 6.32 0.00 39.48 5.14
4060 4440 3.154589 GTTCAAGCCTAGAACCGGG 57.845 57.895 6.32 0.00 39.48 5.73
4064 4444 0.611714 TCCCGGTTCAAGCCTAGAAC 59.388 55.000 0.00 5.27 43.49 3.01
4065 4445 0.611714 GTCCCGGTTCAAGCCTAGAA 59.388 55.000 0.00 0.00 0.00 2.10
4066 4446 0.543410 TGTCCCGGTTCAAGCCTAGA 60.543 55.000 0.00 0.00 0.00 2.43
4067 4447 0.108138 CTGTCCCGGTTCAAGCCTAG 60.108 60.000 0.00 0.00 0.00 3.02
4068 4448 0.543410 TCTGTCCCGGTTCAAGCCTA 60.543 55.000 0.00 0.00 0.00 3.93
4069 4449 1.415672 TTCTGTCCCGGTTCAAGCCT 61.416 55.000 0.00 0.00 0.00 4.58
4070 4450 0.955919 CTTCTGTCCCGGTTCAAGCC 60.956 60.000 0.00 0.00 0.00 4.35
4071 4451 0.955919 CCTTCTGTCCCGGTTCAAGC 60.956 60.000 0.00 0.00 0.00 4.01
4072 4452 0.955919 GCCTTCTGTCCCGGTTCAAG 60.956 60.000 0.00 0.00 0.00 3.02
4073 4453 1.072505 GCCTTCTGTCCCGGTTCAA 59.927 57.895 0.00 0.00 0.00 2.69
4074 4454 2.747686 GCCTTCTGTCCCGGTTCA 59.252 61.111 0.00 0.00 0.00 3.18
4075 4455 2.046217 GGCCTTCTGTCCCGGTTC 60.046 66.667 0.00 0.00 0.00 3.62
4076 4456 3.647771 GGGCCTTCTGTCCCGGTT 61.648 66.667 0.84 0.00 32.00 4.44
4080 4460 2.211468 AAATCCGGGCCTTCTGTCCC 62.211 60.000 0.84 0.00 39.17 4.46
4081 4461 0.544697 TAAATCCGGGCCTTCTGTCC 59.455 55.000 0.84 0.00 0.00 4.02
4082 4462 1.209747 ACTAAATCCGGGCCTTCTGTC 59.790 52.381 0.84 0.00 0.00 3.51
4083 4463 1.286248 ACTAAATCCGGGCCTTCTGT 58.714 50.000 0.84 0.00 0.00 3.41
4084 4464 2.484947 GGTACTAAATCCGGGCCTTCTG 60.485 54.545 0.84 0.00 0.00 3.02
4085 4465 1.767088 GGTACTAAATCCGGGCCTTCT 59.233 52.381 0.84 0.00 0.00 2.85
4086 4466 1.539712 CGGTACTAAATCCGGGCCTTC 60.540 57.143 0.84 0.00 42.61 3.46
4087 4467 0.466963 CGGTACTAAATCCGGGCCTT 59.533 55.000 0.84 0.00 42.61 4.35
4088 4468 2.130512 CGGTACTAAATCCGGGCCT 58.869 57.895 0.84 0.00 42.61 5.19
4089 4469 4.764896 CGGTACTAAATCCGGGCC 57.235 61.111 0.00 0.00 42.61 5.80
4093 4473 3.551659 GGCTAGAACCGGTACTAAATCCG 60.552 52.174 8.00 0.00 45.42 4.18
4094 4474 3.385755 TGGCTAGAACCGGTACTAAATCC 59.614 47.826 8.00 4.34 0.00 3.01
4095 4475 4.366586 GTGGCTAGAACCGGTACTAAATC 58.633 47.826 8.00 0.00 0.00 2.17
4096 4476 3.181483 CGTGGCTAGAACCGGTACTAAAT 60.181 47.826 8.00 0.00 0.00 1.40
4097 4477 2.164219 CGTGGCTAGAACCGGTACTAAA 59.836 50.000 8.00 0.00 0.00 1.85
4098 4478 1.745087 CGTGGCTAGAACCGGTACTAA 59.255 52.381 8.00 0.00 0.00 2.24
4099 4479 1.065491 TCGTGGCTAGAACCGGTACTA 60.065 52.381 8.00 0.00 0.00 1.82
4100 4480 0.322816 TCGTGGCTAGAACCGGTACT 60.323 55.000 8.00 0.00 0.00 2.73
4101 4481 0.527565 TTCGTGGCTAGAACCGGTAC 59.472 55.000 8.00 0.00 0.00 3.34
4102 4482 0.527565 GTTCGTGGCTAGAACCGGTA 59.472 55.000 8.00 0.00 41.38 4.02
4103 4483 1.291272 GTTCGTGGCTAGAACCGGT 59.709 57.895 0.00 0.00 41.38 5.28
4104 4484 4.180496 GTTCGTGGCTAGAACCGG 57.820 61.111 0.00 0.00 41.38 5.28
4107 4487 1.447314 CCCGGTTCGTGGCTAGAAC 60.447 63.158 14.29 14.29 45.16 3.01
4108 4488 1.607178 TCCCGGTTCGTGGCTAGAA 60.607 57.895 0.00 0.00 0.00 2.10
4109 4489 2.036098 TCCCGGTTCGTGGCTAGA 59.964 61.111 0.00 0.00 0.00 2.43
4110 4490 2.162338 TTGTCCCGGTTCGTGGCTAG 62.162 60.000 0.00 0.00 0.00 3.42
4111 4491 1.756408 TTTGTCCCGGTTCGTGGCTA 61.756 55.000 0.00 0.00 0.00 3.93
4112 4492 2.406002 ATTTGTCCCGGTTCGTGGCT 62.406 55.000 0.00 0.00 0.00 4.75
4113 4493 1.969589 ATTTGTCCCGGTTCGTGGC 60.970 57.895 0.00 0.00 0.00 5.01
4114 4494 0.604243 TCATTTGTCCCGGTTCGTGG 60.604 55.000 0.00 0.00 0.00 4.94
4115 4495 0.796312 CTCATTTGTCCCGGTTCGTG 59.204 55.000 0.00 0.00 0.00 4.35
4116 4496 0.953960 GCTCATTTGTCCCGGTTCGT 60.954 55.000 0.00 0.00 0.00 3.85
4117 4497 0.673644 AGCTCATTTGTCCCGGTTCG 60.674 55.000 0.00 0.00 0.00 3.95
4118 4498 0.804989 CAGCTCATTTGTCCCGGTTC 59.195 55.000 0.00 0.00 0.00 3.62
4119 4499 1.244019 GCAGCTCATTTGTCCCGGTT 61.244 55.000 0.00 0.00 0.00 4.44
4120 4500 1.675641 GCAGCTCATTTGTCCCGGT 60.676 57.895 0.00 0.00 0.00 5.28
4121 4501 2.409870 GGCAGCTCATTTGTCCCGG 61.410 63.158 0.00 0.00 0.00 5.73
4122 4502 0.107703 TAGGCAGCTCATTTGTCCCG 60.108 55.000 0.00 0.00 0.00 5.14
4123 4503 2.355010 ATAGGCAGCTCATTTGTCCC 57.645 50.000 0.00 0.00 0.00 4.46
4124 4504 6.763610 GGTATATATAGGCAGCTCATTTGTCC 59.236 42.308 0.00 0.00 0.00 4.02
4125 4505 6.763610 GGGTATATATAGGCAGCTCATTTGTC 59.236 42.308 0.00 0.00 0.00 3.18
4126 4506 6.353082 GGGGTATATATAGGCAGCTCATTTGT 60.353 42.308 0.00 0.00 0.00 2.83
4127 4507 6.058183 GGGGTATATATAGGCAGCTCATTTG 58.942 44.000 0.00 0.00 0.00 2.32
4128 4508 5.731187 TGGGGTATATATAGGCAGCTCATTT 59.269 40.000 0.00 0.00 0.00 2.32
4129 4509 5.288687 TGGGGTATATATAGGCAGCTCATT 58.711 41.667 0.00 0.00 0.00 2.57
4130 4510 4.895836 TGGGGTATATATAGGCAGCTCAT 58.104 43.478 0.00 0.00 0.00 2.90
4131 4511 4.346478 TGGGGTATATATAGGCAGCTCA 57.654 45.455 0.00 0.00 0.00 4.26
4132 4512 4.021894 CGATGGGGTATATATAGGCAGCTC 60.022 50.000 0.00 0.00 0.00 4.09
4133 4513 3.898123 CGATGGGGTATATATAGGCAGCT 59.102 47.826 0.00 0.00 0.00 4.24
4134 4514 3.555168 GCGATGGGGTATATATAGGCAGC 60.555 52.174 0.00 0.00 0.00 5.25
4135 4515 3.006967 GGCGATGGGGTATATATAGGCAG 59.993 52.174 0.00 0.00 0.00 4.85
4136 4516 2.969950 GGCGATGGGGTATATATAGGCA 59.030 50.000 0.00 0.00 0.00 4.75
4137 4517 2.029290 CGGCGATGGGGTATATATAGGC 60.029 54.545 0.00 0.00 0.00 3.93
4138 4518 2.029290 GCGGCGATGGGGTATATATAGG 60.029 54.545 12.98 0.00 0.00 2.57
4139 4519 2.626266 TGCGGCGATGGGGTATATATAG 59.374 50.000 12.98 0.00 0.00 1.31
4140 4520 2.626266 CTGCGGCGATGGGGTATATATA 59.374 50.000 12.98 0.00 0.00 0.86
4141 4521 1.412710 CTGCGGCGATGGGGTATATAT 59.587 52.381 12.98 0.00 0.00 0.86
4142 4522 0.821517 CTGCGGCGATGGGGTATATA 59.178 55.000 12.98 0.00 0.00 0.86
4143 4523 1.596934 CTGCGGCGATGGGGTATAT 59.403 57.895 12.98 0.00 0.00 0.86
4144 4524 3.056458 CTGCGGCGATGGGGTATA 58.944 61.111 12.98 0.00 0.00 1.47
4145 4525 4.626081 GCTGCGGCGATGGGGTAT 62.626 66.667 12.98 0.00 0.00 2.73
4156 4536 4.994471 TGGAGTGCTGTGCTGCGG 62.994 66.667 0.00 0.00 35.36 5.69
4157 4537 2.453773 CTTTGGAGTGCTGTGCTGCG 62.454 60.000 0.00 0.00 35.36 5.18
4158 4538 1.285023 CTTTGGAGTGCTGTGCTGC 59.715 57.895 0.00 0.00 0.00 5.25
4159 4539 0.309922 CACTTTGGAGTGCTGTGCTG 59.690 55.000 0.00 0.00 46.08 4.41
4160 4540 2.711711 CACTTTGGAGTGCTGTGCT 58.288 52.632 0.00 0.00 46.08 4.40
4185 4565 1.302192 CCCTCGACGGCCAGAAAAA 60.302 57.895 2.24 0.00 0.00 1.94
4186 4566 2.345991 CCCTCGACGGCCAGAAAA 59.654 61.111 2.24 0.00 0.00 2.29
4187 4567 3.702048 CCCCTCGACGGCCAGAAA 61.702 66.667 2.24 0.00 0.00 2.52
4188 4568 4.689549 TCCCCTCGACGGCCAGAA 62.690 66.667 2.24 0.00 0.00 3.02
4195 4575 3.031417 AAATGCCCTCCCCTCGACG 62.031 63.158 0.00 0.00 0.00 5.12
4196 4576 1.452108 CAAATGCCCTCCCCTCGAC 60.452 63.158 0.00 0.00 0.00 4.20
4197 4577 2.679342 CCAAATGCCCTCCCCTCGA 61.679 63.158 0.00 0.00 0.00 4.04
4198 4578 2.124151 CCAAATGCCCTCCCCTCG 60.124 66.667 0.00 0.00 0.00 4.63
4199 4579 2.280079 CCCAAATGCCCTCCCCTC 59.720 66.667 0.00 0.00 0.00 4.30
4200 4580 2.537959 ACCCAAATGCCCTCCCCT 60.538 61.111 0.00 0.00 0.00 4.79
4201 4581 2.364186 CACCCAAATGCCCTCCCC 60.364 66.667 0.00 0.00 0.00 4.81
4202 4582 3.076916 GCACCCAAATGCCCTCCC 61.077 66.667 0.00 0.00 39.86 4.30
4208 4588 1.020437 GAGCTAGAGCACCCAAATGC 58.980 55.000 4.01 0.00 46.50 3.56
4209 4589 2.012673 GTGAGCTAGAGCACCCAAATG 58.987 52.381 4.01 0.00 45.16 2.32
4210 4590 1.065126 GGTGAGCTAGAGCACCCAAAT 60.065 52.381 18.65 0.00 46.91 2.32
4211 4591 0.324943 GGTGAGCTAGAGCACCCAAA 59.675 55.000 18.65 0.00 46.91 3.28
4212 4592 1.983224 GGTGAGCTAGAGCACCCAA 59.017 57.895 18.65 0.00 46.91 4.12
4213 4593 3.713650 GGTGAGCTAGAGCACCCA 58.286 61.111 18.65 0.00 46.91 4.51
4216 4596 2.060050 TAGGAGGTGAGCTAGAGCAC 57.940 55.000 4.01 0.00 45.16 4.40
4217 4597 2.591923 CATAGGAGGTGAGCTAGAGCA 58.408 52.381 4.01 0.00 45.16 4.26
4218 4598 1.272212 GCATAGGAGGTGAGCTAGAGC 59.728 57.143 0.00 0.00 42.49 4.09
4219 4599 2.295909 GTGCATAGGAGGTGAGCTAGAG 59.704 54.545 0.00 0.00 0.00 2.43
4220 4600 2.311463 GTGCATAGGAGGTGAGCTAGA 58.689 52.381 0.00 0.00 0.00 2.43
4221 4601 2.034878 TGTGCATAGGAGGTGAGCTAG 58.965 52.381 0.00 0.00 0.00 3.42
4222 4602 2.159179 TGTGCATAGGAGGTGAGCTA 57.841 50.000 0.00 0.00 0.00 3.32
4223 4603 1.140452 CATGTGCATAGGAGGTGAGCT 59.860 52.381 0.00 0.00 0.00 4.09
4224 4604 1.139654 TCATGTGCATAGGAGGTGAGC 59.860 52.381 0.00 0.00 0.00 4.26
4225 4605 2.224233 CCTCATGTGCATAGGAGGTGAG 60.224 54.545 29.58 17.28 41.58 3.51
4226 4606 1.764723 CCTCATGTGCATAGGAGGTGA 59.235 52.381 29.58 9.38 41.58 4.02
4227 4607 2.251409 CCTCATGTGCATAGGAGGTG 57.749 55.000 29.58 10.75 41.58 4.00
4239 4619 4.326826 ACATTTCATCGAACACCTCATGT 58.673 39.130 0.00 0.00 46.42 3.21
4240 4620 4.633126 AGACATTTCATCGAACACCTCATG 59.367 41.667 0.00 0.00 0.00 3.07
4241 4621 4.633126 CAGACATTTCATCGAACACCTCAT 59.367 41.667 0.00 0.00 0.00 2.90
4242 4622 3.996363 CAGACATTTCATCGAACACCTCA 59.004 43.478 0.00 0.00 0.00 3.86
4243 4623 4.245660 TCAGACATTTCATCGAACACCTC 58.754 43.478 0.00 0.00 0.00 3.85
4244 4624 4.248859 CTCAGACATTTCATCGAACACCT 58.751 43.478 0.00 0.00 0.00 4.00
4245 4625 3.181516 GCTCAGACATTTCATCGAACACC 60.182 47.826 0.00 0.00 0.00 4.16
4246 4626 3.181516 GGCTCAGACATTTCATCGAACAC 60.182 47.826 0.00 0.00 0.00 3.32
4247 4627 3.002791 GGCTCAGACATTTCATCGAACA 58.997 45.455 0.00 0.00 0.00 3.18
4248 4628 3.002791 TGGCTCAGACATTTCATCGAAC 58.997 45.455 0.00 0.00 0.00 3.95
4249 4629 3.002791 GTGGCTCAGACATTTCATCGAA 58.997 45.455 0.00 0.00 0.00 3.71
4250 4630 2.621338 GTGGCTCAGACATTTCATCGA 58.379 47.619 0.00 0.00 0.00 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.