Multiple sequence alignment - TraesCS3D01G347900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G347900 chr3D 100.000 6287 0 0 1 6287 459462315 459468601 0.000000e+00 11611.0
1 TraesCS3D01G347900 chr3D 96.154 78 2 1 5062 5138 536333170 536333247 6.620000e-25 126.0
2 TraesCS3D01G347900 chr3D 90.909 55 5 0 2210 2264 80261241 80261187 2.430000e-09 75.0
3 TraesCS3D01G347900 chr3D 97.059 34 1 0 5721 5754 459467837 459467870 2.450000e-04 58.4
4 TraesCS3D01G347900 chr3D 97.059 34 1 0 5523 5556 459468035 459468068 2.450000e-04 58.4
5 TraesCS3D01G347900 chr3B 93.146 4844 188 50 289 5066 607379402 607384167 0.000000e+00 6974.0
6 TraesCS3D01G347900 chr3B 98.175 1151 19 1 5137 6287 607384164 607385312 0.000000e+00 2008.0
7 TraesCS3D01G347900 chr3B 78.266 865 137 31 4222 5053 750207892 750207046 5.620000e-140 508.0
8 TraesCS3D01G347900 chr3B 89.655 58 6 0 2207 2264 730819337 730819394 2.430000e-09 75.0
9 TraesCS3D01G347900 chr3B 100.000 34 0 0 5721 5754 607384548 607384581 5.260000e-06 63.9
10 TraesCS3D01G347900 chr3A 93.509 4745 169 47 379 5066 601561403 601556741 0.000000e+00 6927.0
11 TraesCS3D01G347900 chr3A 97.220 1151 30 1 5137 6287 601556744 601555596 0.000000e+00 1947.0
12 TraesCS3D01G347900 chr3A 77.548 726 124 24 4191 4896 697749012 697748306 9.820000e-108 401.0
13 TraesCS3D01G347900 chr3A 88.776 98 8 3 1296 1393 697751477 697751383 3.980000e-22 117.0
14 TraesCS3D01G347900 chr3A 100.000 34 0 0 5721 5754 601556360 601556327 5.260000e-06 63.9
15 TraesCS3D01G347900 chr3A 97.059 34 1 0 5523 5556 601556162 601556129 2.450000e-04 58.4
16 TraesCS3D01G347900 chr6A 89.866 523 47 2 5765 6287 22803757 22804273 0.000000e+00 667.0
17 TraesCS3D01G347900 chr6A 89.756 410 42 0 5878 6287 22695844 22696253 5.580000e-145 525.0
18 TraesCS3D01G347900 chr6A 79.327 416 47 20 5248 5636 22695232 22695635 8.090000e-64 255.0
19 TraesCS3D01G347900 chr6A 85.792 183 18 5 5162 5339 22695046 22695225 2.990000e-43 187.0
20 TraesCS3D01G347900 chr6A 79.621 211 31 9 2786 2990 204743043 204742839 2.360000e-29 141.0
21 TraesCS3D01G347900 chr6A 86.667 90 9 3 76 163 595986410 595986498 5.190000e-16 97.1
22 TraesCS3D01G347900 chr6A 85.484 62 8 1 244 304 615948838 615948777 5.260000e-06 63.9
23 TraesCS3D01G347900 chr6A 94.444 36 1 1 5721 5756 22695531 22695565 3.000000e-03 54.7
24 TraesCS3D01G347900 chr6A 100.000 29 0 0 5721 5749 22803530 22803558 3.000000e-03 54.7
25 TraesCS3D01G347900 chr6D 88.931 533 53 3 5755 6287 24261992 24262518 0.000000e+00 652.0
26 TraesCS3D01G347900 chr6D 76.723 653 86 37 5248 5852 24230163 24230797 2.850000e-78 303.0
27 TraesCS3D01G347900 chr6D 86.802 197 21 2 5148 5339 24229960 24230156 1.370000e-51 215.0
28 TraesCS3D01G347900 chr6D 89.744 78 6 2 4801 4877 24229733 24229809 1.440000e-16 99.0
29 TraesCS3D01G347900 chr6D 100.000 29 0 0 5721 5749 24261775 24261803 3.000000e-03 54.7
30 TraesCS3D01G347900 chr6B 88.910 532 56 3 5755 6286 39339160 39339688 0.000000e+00 652.0
31 TraesCS3D01G347900 chr6B 78.832 411 51 19 5250 5636 39197850 39198248 1.750000e-60 244.0
32 TraesCS3D01G347900 chr6B 85.279 197 24 2 5148 5339 39197644 39197840 1.380000e-46 198.0
33 TraesCS3D01G347900 chr6B 84.375 128 17 3 75 202 142994591 142994715 8.560000e-24 122.0
34 TraesCS3D01G347900 chr6B 94.444 36 1 1 5721 5756 39198144 39198178 3.000000e-03 54.7
35 TraesCS3D01G347900 chr5A 87.476 527 55 5 5764 6287 465111731 465111213 1.170000e-166 597.0
36 TraesCS3D01G347900 chr5A 83.105 219 29 7 2769 2983 427067831 427068045 6.430000e-45 193.0
37 TraesCS3D01G347900 chr5A 79.253 241 43 6 2814 3049 666232890 666232652 1.810000e-35 161.0
38 TraesCS3D01G347900 chr5A 95.652 46 2 0 2424 2469 510543746 510543701 2.430000e-09 75.0
39 TraesCS3D01G347900 chr2A 87.127 536 58 6 5755 6287 425812691 425813218 1.170000e-166 597.0
40 TraesCS3D01G347900 chr5D 83.824 204 25 7 2784 2983 329617444 329617245 2.990000e-43 187.0
41 TraesCS3D01G347900 chr5D 83.636 110 16 2 2366 2474 329617979 329617871 1.120000e-17 102.0
42 TraesCS3D01G347900 chr5D 95.652 46 2 0 2424 2469 402951780 402951825 2.430000e-09 75.0
43 TraesCS3D01G347900 chr5B 94.958 119 6 0 1673 1791 710457254 710457372 2.990000e-43 187.0
44 TraesCS3D01G347900 chr5B 83.636 110 16 2 2366 2474 382777487 382777379 1.120000e-17 102.0
45 TraesCS3D01G347900 chr5B 95.652 46 2 0 2424 2469 482289133 482289178 2.430000e-09 75.0
46 TraesCS3D01G347900 chr4D 80.000 240 43 4 2814 3049 485387036 485386798 8.380000e-39 172.0
47 TraesCS3D01G347900 chr4D 91.250 80 5 2 5063 5141 215459628 215459550 2.400000e-19 108.0
48 TraesCS3D01G347900 chr4D 97.059 34 1 0 5248 5281 381837114 381837081 2.450000e-04 58.4
49 TraesCS3D01G347900 chr4B 78.750 240 46 4 2814 3049 618593466 618593228 8.440000e-34 156.0
50 TraesCS3D01G347900 chr4B 92.405 79 3 1 5063 5138 613145931 613145853 6.660000e-20 110.0
51 TraesCS3D01G347900 chr4B 91.358 81 3 2 5063 5139 28406856 28406936 2.400000e-19 108.0
52 TraesCS3D01G347900 chr4A 90.909 88 2 4 5060 5145 598725656 598725739 5.150000e-21 113.0
53 TraesCS3D01G347900 chr7D 93.243 74 5 0 5063 5136 121199832 121199759 6.660000e-20 110.0
54 TraesCS3D01G347900 chr7D 95.588 68 3 0 5063 5130 121788918 121788985 6.660000e-20 110.0
55 TraesCS3D01G347900 chr2D 91.139 79 6 1 5063 5141 451974403 451974326 8.620000e-19 106.0
56 TraesCS3D01G347900 chr2D 90.476 63 5 1 244 305 498237540 498237478 1.450000e-11 82.4
57 TraesCS3D01G347900 chr1B 91.250 80 4 3 5062 5138 654631662 654631583 8.620000e-19 106.0
58 TraesCS3D01G347900 chr1B 91.525 59 5 0 244 302 121710778 121710720 1.450000e-11 82.4
59 TraesCS3D01G347900 chr7A 88.333 60 6 1 244 303 29488959 29489017 3.140000e-08 71.3
60 TraesCS3D01G347900 chr7B 100.000 28 0 0 5414 5441 47335390 47335417 1.100000e-02 52.8
61 TraesCS3D01G347900 chr7B 100.000 28 0 0 5414 5441 47595189 47595216 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G347900 chr3D 459462315 459468601 6286 False 3909.266667 11611 98.039333 1 6287 3 chr3D.!!$F2 6286
1 TraesCS3D01G347900 chr3B 607379402 607385312 5910 False 3015.300000 6974 97.107000 289 6287 3 chr3B.!!$F2 5998
2 TraesCS3D01G347900 chr3B 750207046 750207892 846 True 508.000000 508 78.266000 4222 5053 1 chr3B.!!$R1 831
3 TraesCS3D01G347900 chr3A 601555596 601561403 5807 True 2249.075000 6927 96.947000 379 6287 4 chr3A.!!$R1 5908
4 TraesCS3D01G347900 chr3A 697748306 697751477 3171 True 259.000000 401 83.162000 1296 4896 2 chr3A.!!$R2 3600
5 TraesCS3D01G347900 chr6A 22803530 22804273 743 False 360.850000 667 94.933000 5721 6287 2 chr6A.!!$F3 566
6 TraesCS3D01G347900 chr6A 22695046 22696253 1207 False 255.425000 525 87.329750 5162 6287 4 chr6A.!!$F2 1125
7 TraesCS3D01G347900 chr6D 24261775 24262518 743 False 353.350000 652 94.465500 5721 6287 2 chr6D.!!$F2 566
8 TraesCS3D01G347900 chr6D 24229733 24230797 1064 False 205.666667 303 84.423000 4801 5852 3 chr6D.!!$F1 1051
9 TraesCS3D01G347900 chr6B 39339160 39339688 528 False 652.000000 652 88.910000 5755 6286 1 chr6B.!!$F1 531
10 TraesCS3D01G347900 chr5A 465111213 465111731 518 True 597.000000 597 87.476000 5764 6287 1 chr5A.!!$R1 523
11 TraesCS3D01G347900 chr2A 425812691 425813218 527 False 597.000000 597 87.127000 5755 6287 1 chr2A.!!$F1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 934 0.563672 CTCCCCTCCCTAGCTACCTT 59.436 60.000 0.00 0.0 0.00 3.50 F
1602 1664 0.322816 TTCTGCTGGGGACATCTTGC 60.323 55.000 0.00 0.0 41.51 4.01 F
1914 1998 0.546598 GATCCCCCAAACGGACTCAT 59.453 55.000 0.00 0.0 30.39 2.90 F
1927 2013 0.608640 GACTCATGGTCGGTGGACTT 59.391 55.000 0.00 0.0 42.97 3.01 F
2802 2979 1.125021 CAAGTTCGAGCAGTACAAGCG 59.875 52.381 1.01 0.0 37.01 4.68 F
3649 4152 1.185315 AACCAATGCTGCCACATACC 58.815 50.000 0.00 0.0 0.00 2.73 F
3976 4507 1.609072 GAAAGGTCAGTTCAGGCAACC 59.391 52.381 0.00 0.0 35.28 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2512 2655 0.179150 ACTCGCGCTCTCTGATGTTC 60.179 55.000 5.56 0.00 0.00 3.18 R
3457 3638 0.934496 TGTCTGAGCGAACAAAACCG 59.066 50.000 0.00 0.00 0.00 4.44 R
3649 4152 0.029834 GGTAAATCGCAGCCTGCATG 59.970 55.000 18.21 0.85 45.36 4.06 R
3945 4476 3.617284 ACTGACCTTTCCGAACAAGTTT 58.383 40.909 0.00 0.00 0.00 2.66 R
4506 5562 0.175760 TGCCTATCTCAGAACCGTGC 59.824 55.000 0.00 0.00 0.00 5.34 R
5120 6196 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28 R
5650 6856 0.250081 GGCAGGCCTCGAAAGGATAG 60.250 60.000 0.00 0.00 46.67 2.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.658799 TTTTTGTTCAGATTTTATTGTTGACCA 57.341 25.926 0.00 0.00 0.00 4.02
37 38 8.870160 TTTGTTCAGATTTTATTGTTGACCAG 57.130 30.769 0.00 0.00 0.00 4.00
38 39 6.980593 TGTTCAGATTTTATTGTTGACCAGG 58.019 36.000 0.00 0.00 0.00 4.45
39 40 6.775142 TGTTCAGATTTTATTGTTGACCAGGA 59.225 34.615 0.00 0.00 0.00 3.86
40 41 6.817765 TCAGATTTTATTGTTGACCAGGAC 57.182 37.500 0.00 0.00 0.00 3.85
41 42 6.303054 TCAGATTTTATTGTTGACCAGGACA 58.697 36.000 0.00 0.00 0.00 4.02
42 43 6.947733 TCAGATTTTATTGTTGACCAGGACAT 59.052 34.615 0.00 0.00 0.00 3.06
43 44 7.451255 TCAGATTTTATTGTTGACCAGGACATT 59.549 33.333 0.00 0.00 0.00 2.71
44 45 8.739039 CAGATTTTATTGTTGACCAGGACATTA 58.261 33.333 0.00 0.00 0.00 1.90
45 46 9.308000 AGATTTTATTGTTGACCAGGACATTAA 57.692 29.630 0.00 0.00 0.00 1.40
46 47 9.573133 GATTTTATTGTTGACCAGGACATTAAG 57.427 33.333 0.00 0.00 0.00 1.85
47 48 6.509418 TTATTGTTGACCAGGACATTAAGC 57.491 37.500 0.00 0.00 0.00 3.09
48 49 3.500448 TGTTGACCAGGACATTAAGCA 57.500 42.857 0.00 0.00 0.00 3.91
49 50 3.411446 TGTTGACCAGGACATTAAGCAG 58.589 45.455 0.00 0.00 0.00 4.24
50 51 3.072330 TGTTGACCAGGACATTAAGCAGA 59.928 43.478 0.00 0.00 0.00 4.26
51 52 3.334583 TGACCAGGACATTAAGCAGAC 57.665 47.619 0.00 0.00 0.00 3.51
52 53 2.027192 TGACCAGGACATTAAGCAGACC 60.027 50.000 0.00 0.00 0.00 3.85
53 54 1.985159 ACCAGGACATTAAGCAGACCA 59.015 47.619 0.00 0.00 0.00 4.02
54 55 2.578021 ACCAGGACATTAAGCAGACCAT 59.422 45.455 0.00 0.00 0.00 3.55
55 56 2.947652 CCAGGACATTAAGCAGACCATG 59.052 50.000 0.00 0.00 0.00 3.66
56 57 3.614092 CAGGACATTAAGCAGACCATGT 58.386 45.455 0.00 0.00 32.41 3.21
57 58 4.384098 CCAGGACATTAAGCAGACCATGTA 60.384 45.833 0.00 0.00 29.81 2.29
58 59 5.185454 CAGGACATTAAGCAGACCATGTAA 58.815 41.667 0.00 0.00 29.81 2.41
59 60 5.647658 CAGGACATTAAGCAGACCATGTAAA 59.352 40.000 0.00 0.00 29.81 2.01
60 61 5.648092 AGGACATTAAGCAGACCATGTAAAC 59.352 40.000 0.00 0.00 29.81 2.01
61 62 5.414454 GGACATTAAGCAGACCATGTAAACA 59.586 40.000 0.00 0.00 29.81 2.83
62 63 6.072175 GGACATTAAGCAGACCATGTAAACAA 60.072 38.462 0.00 0.00 29.81 2.83
63 64 6.677913 ACATTAAGCAGACCATGTAAACAAC 58.322 36.000 0.00 0.00 0.00 3.32
64 65 6.264292 ACATTAAGCAGACCATGTAAACAACA 59.736 34.615 0.00 0.00 43.86 3.33
78 79 7.692908 TGTAAACAACATTTAAGCAAAGCTC 57.307 32.000 0.00 0.00 32.66 4.09
79 80 5.888412 AAACAACATTTAAGCAAAGCTCG 57.112 34.783 0.00 0.00 38.25 5.03
80 81 3.308530 ACAACATTTAAGCAAAGCTCGC 58.691 40.909 0.00 0.00 38.25 5.03
81 82 3.004734 ACAACATTTAAGCAAAGCTCGCT 59.995 39.130 4.80 4.80 38.25 4.93
82 83 3.477899 ACATTTAAGCAAAGCTCGCTC 57.522 42.857 10.75 0.00 38.25 5.03
83 84 3.077359 ACATTTAAGCAAAGCTCGCTCT 58.923 40.909 10.75 4.99 38.25 4.09
84 85 4.253685 ACATTTAAGCAAAGCTCGCTCTA 58.746 39.130 10.75 4.18 38.25 2.43
85 86 4.331168 ACATTTAAGCAAAGCTCGCTCTAG 59.669 41.667 10.75 3.63 38.25 2.43
86 87 3.594603 TTAAGCAAAGCTCGCTCTAGT 57.405 42.857 10.75 0.00 38.25 2.57
87 88 1.719600 AAGCAAAGCTCGCTCTAGTG 58.280 50.000 10.75 0.00 38.25 2.74
88 89 0.739112 AGCAAAGCTCGCTCTAGTGC 60.739 55.000 6.72 6.72 33.35 4.40
89 90 0.739112 GCAAAGCTCGCTCTAGTGCT 60.739 55.000 14.40 3.72 41.98 4.40
91 92 1.392853 CAAAGCTCGCTCTAGTGCTTG 59.607 52.381 14.40 7.99 46.24 4.01
92 93 0.605589 AAGCTCGCTCTAGTGCTTGT 59.394 50.000 14.40 0.00 45.54 3.16
93 94 1.464734 AGCTCGCTCTAGTGCTTGTA 58.535 50.000 14.40 0.00 37.66 2.41
94 95 1.819288 AGCTCGCTCTAGTGCTTGTAA 59.181 47.619 14.40 0.00 37.66 2.41
95 96 2.428890 AGCTCGCTCTAGTGCTTGTAAT 59.571 45.455 14.40 0.00 37.66 1.89
96 97 2.792116 GCTCGCTCTAGTGCTTGTAATC 59.208 50.000 14.40 0.00 0.00 1.75
97 98 3.039405 CTCGCTCTAGTGCTTGTAATCG 58.961 50.000 14.40 0.00 0.00 3.34
98 99 2.422479 TCGCTCTAGTGCTTGTAATCGT 59.578 45.455 14.40 0.00 0.00 3.73
99 100 2.784380 CGCTCTAGTGCTTGTAATCGTC 59.216 50.000 14.40 0.00 0.00 4.20
100 101 2.784380 GCTCTAGTGCTTGTAATCGTCG 59.216 50.000 9.52 0.00 0.00 5.12
101 102 3.731264 GCTCTAGTGCTTGTAATCGTCGT 60.731 47.826 9.52 0.00 0.00 4.34
102 103 4.413087 CTCTAGTGCTTGTAATCGTCGTT 58.587 43.478 0.00 0.00 0.00 3.85
103 104 5.550232 TCTAGTGCTTGTAATCGTCGTTA 57.450 39.130 0.00 0.00 0.00 3.18
104 105 5.566623 TCTAGTGCTTGTAATCGTCGTTAG 58.433 41.667 0.00 0.00 0.00 2.34
105 106 4.430137 AGTGCTTGTAATCGTCGTTAGA 57.570 40.909 0.00 0.00 0.00 2.10
106 107 4.995124 AGTGCTTGTAATCGTCGTTAGAT 58.005 39.130 0.00 0.00 0.00 1.98
107 108 4.798907 AGTGCTTGTAATCGTCGTTAGATG 59.201 41.667 0.00 0.00 34.75 2.90
108 109 4.026804 GTGCTTGTAATCGTCGTTAGATGG 60.027 45.833 0.00 0.00 34.23 3.51
109 110 4.110482 GCTTGTAATCGTCGTTAGATGGT 58.890 43.478 0.00 0.00 34.23 3.55
110 111 4.206609 GCTTGTAATCGTCGTTAGATGGTC 59.793 45.833 0.00 0.00 34.23 4.02
111 112 5.571784 TTGTAATCGTCGTTAGATGGTCT 57.428 39.130 0.00 0.00 34.23 3.85
112 113 6.682423 TTGTAATCGTCGTTAGATGGTCTA 57.318 37.500 0.00 0.00 34.23 2.59
113 114 6.052840 TGTAATCGTCGTTAGATGGTCTAC 57.947 41.667 0.00 0.00 34.23 2.59
114 115 3.874400 ATCGTCGTTAGATGGTCTACG 57.126 47.619 0.00 0.00 34.23 3.51
115 116 1.935873 TCGTCGTTAGATGGTCTACGG 59.064 52.381 0.00 0.00 34.23 4.02
116 117 1.935873 CGTCGTTAGATGGTCTACGGA 59.064 52.381 0.00 0.00 30.31 4.69
117 118 2.286067 CGTCGTTAGATGGTCTACGGAC 60.286 54.545 0.00 6.56 41.43 4.79
128 129 3.454371 GTCTACGGACCTGCATGTATT 57.546 47.619 0.00 0.00 36.53 1.89
129 130 3.793559 GTCTACGGACCTGCATGTATTT 58.206 45.455 0.00 0.00 36.53 1.40
130 131 4.189231 GTCTACGGACCTGCATGTATTTT 58.811 43.478 0.00 0.00 36.53 1.82
131 132 4.634443 GTCTACGGACCTGCATGTATTTTT 59.366 41.667 0.00 0.00 36.53 1.94
160 161 9.623000 AACTTTTAGTGTTCTTTGTACTACCAT 57.377 29.630 0.00 0.00 0.00 3.55
165 166 9.701098 TTAGTGTTCTTTGTACTACCATAACAG 57.299 33.333 0.00 0.00 0.00 3.16
166 167 7.732996 AGTGTTCTTTGTACTACCATAACAGT 58.267 34.615 0.00 0.00 0.00 3.55
167 168 8.208903 AGTGTTCTTTGTACTACCATAACAGTT 58.791 33.333 0.00 0.00 0.00 3.16
168 169 8.280497 GTGTTCTTTGTACTACCATAACAGTTG 58.720 37.037 0.00 0.00 0.00 3.16
169 170 8.205512 TGTTCTTTGTACTACCATAACAGTTGA 58.794 33.333 0.00 0.00 0.00 3.18
170 171 9.216117 GTTCTTTGTACTACCATAACAGTTGAT 57.784 33.333 0.00 0.00 0.00 2.57
182 183 9.407380 ACCATAACAGTTGATAAATAGATTGCA 57.593 29.630 0.00 0.00 0.00 4.08
190 191 9.860898 AGTTGATAAATAGATTGCAAGTTTTCC 57.139 29.630 4.94 1.02 0.00 3.13
191 192 9.860898 GTTGATAAATAGATTGCAAGTTTTCCT 57.139 29.630 4.94 0.00 0.00 3.36
193 194 8.397906 TGATAAATAGATTGCAAGTTTTCCTCG 58.602 33.333 4.94 0.00 0.00 4.63
194 195 2.997485 AGATTGCAAGTTTTCCTCGC 57.003 45.000 4.94 0.00 0.00 5.03
195 196 2.229792 AGATTGCAAGTTTTCCTCGCA 58.770 42.857 4.94 0.00 0.00 5.10
196 197 2.622942 AGATTGCAAGTTTTCCTCGCAA 59.377 40.909 4.94 0.00 45.70 4.85
197 198 2.949451 TTGCAAGTTTTCCTCGCAAA 57.051 40.000 0.00 0.00 39.47 3.68
198 199 2.949451 TGCAAGTTTTCCTCGCAAAA 57.051 40.000 0.00 0.00 0.00 2.44
199 200 3.238108 TGCAAGTTTTCCTCGCAAAAA 57.762 38.095 0.00 0.00 0.00 1.94
221 222 6.740411 AAAACAACATTCAAGCAAACATGT 57.260 29.167 0.00 0.00 0.00 3.21
222 223 6.740411 AAACAACATTCAAGCAAACATGTT 57.260 29.167 4.92 4.92 39.85 2.71
223 224 7.840342 AAACAACATTCAAGCAAACATGTTA 57.160 28.000 12.39 0.00 37.68 2.41
224 225 7.840342 AACAACATTCAAGCAAACATGTTAA 57.160 28.000 12.39 1.29 37.68 2.01
225 226 7.467557 ACAACATTCAAGCAAACATGTTAAG 57.532 32.000 12.39 8.97 37.68 1.85
226 227 6.018832 ACAACATTCAAGCAAACATGTTAAGC 60.019 34.615 21.81 21.81 37.68 3.09
227 228 5.599732 ACATTCAAGCAAACATGTTAAGCA 58.400 33.333 27.51 14.10 0.00 3.91
228 229 6.225318 ACATTCAAGCAAACATGTTAAGCAT 58.775 32.000 27.51 18.45 38.60 3.79
229 230 7.377398 ACATTCAAGCAAACATGTTAAGCATA 58.623 30.769 27.51 15.21 35.74 3.14
230 231 8.036575 ACATTCAAGCAAACATGTTAAGCATAT 58.963 29.630 27.51 15.93 35.74 1.78
231 232 9.518906 CATTCAAGCAAACATGTTAAGCATATA 57.481 29.630 27.51 15.73 35.74 0.86
257 258 6.993786 TTTTTAGAATGGTCGTATGCATCA 57.006 33.333 0.19 0.00 0.00 3.07
258 259 7.566760 TTTTTAGAATGGTCGTATGCATCAT 57.433 32.000 0.19 0.00 0.00 2.45
259 260 6.785488 TTTAGAATGGTCGTATGCATCATC 57.215 37.500 0.19 0.00 0.00 2.92
260 261 3.668447 AGAATGGTCGTATGCATCATCC 58.332 45.455 0.19 2.76 0.00 3.51
261 262 3.071457 AGAATGGTCGTATGCATCATCCA 59.929 43.478 0.19 8.81 0.00 3.41
262 263 2.531522 TGGTCGTATGCATCATCCAG 57.468 50.000 0.19 0.00 0.00 3.86
263 264 2.038659 TGGTCGTATGCATCATCCAGA 58.961 47.619 0.19 0.00 0.00 3.86
264 265 2.634453 TGGTCGTATGCATCATCCAGAT 59.366 45.455 0.19 0.00 37.48 2.90
273 274 2.768698 CATCATCCAGATGCAGAGACC 58.231 52.381 2.63 0.00 46.90 3.85
274 275 1.870064 TCATCCAGATGCAGAGACCA 58.130 50.000 2.63 0.00 38.65 4.02
275 276 1.761198 TCATCCAGATGCAGAGACCAG 59.239 52.381 2.63 0.00 38.65 4.00
276 277 1.129917 ATCCAGATGCAGAGACCAGG 58.870 55.000 0.00 0.00 0.00 4.45
277 278 0.979709 TCCAGATGCAGAGACCAGGG 60.980 60.000 0.00 0.00 0.00 4.45
278 279 1.525923 CAGATGCAGAGACCAGGGG 59.474 63.158 0.00 0.00 0.00 4.79
279 280 1.081833 AGATGCAGAGACCAGGGGT 59.918 57.895 0.00 0.00 39.44 4.95
291 292 3.677963 CAGGGGTCATCCTGCTTTT 57.322 52.632 0.00 0.00 46.47 2.27
292 293 1.928868 CAGGGGTCATCCTGCTTTTT 58.071 50.000 0.00 0.00 46.47 1.94
331 332 1.646540 CTGTTTTCGCAACGAGGCA 59.353 52.632 0.00 0.00 37.14 4.75
348 349 2.136878 CAGGCAGCGATCTACCCCT 61.137 63.158 0.00 0.00 0.00 4.79
350 351 2.336809 GCAGCGATCTACCCCTCG 59.663 66.667 0.00 0.00 37.92 4.63
356 357 1.931841 GCGATCTACCCCTCGTTTTTC 59.068 52.381 0.00 0.00 37.23 2.29
394 410 2.035626 CCCACCGGCAAAGACCAT 59.964 61.111 0.00 0.00 0.00 3.55
430 446 4.250305 ACGCGCACCAACCTTCCT 62.250 61.111 5.73 0.00 0.00 3.36
432 448 3.056328 GCGCACCAACCTTCCTCC 61.056 66.667 0.30 0.00 0.00 4.30
546 568 2.355126 CTCATCATCCGACGGCCG 60.355 66.667 26.86 26.86 38.18 6.13
567 589 1.379527 CACGGACCTTTGCCTATTCC 58.620 55.000 0.00 0.00 0.00 3.01
572 594 2.619590 GGACCTTTGCCTATTCCGGAAA 60.620 50.000 23.08 9.80 0.00 3.13
574 596 2.823747 ACCTTTGCCTATTCCGGAAAAC 59.176 45.455 23.08 11.30 28.56 2.43
575 597 2.823154 CCTTTGCCTATTCCGGAAAACA 59.177 45.455 23.08 13.85 28.56 2.83
576 598 3.366985 CCTTTGCCTATTCCGGAAAACAC 60.367 47.826 23.08 12.04 28.56 3.32
577 599 1.444836 TGCCTATTCCGGAAAACACG 58.555 50.000 23.08 8.27 0.00 4.49
578 600 1.002201 TGCCTATTCCGGAAAACACGA 59.998 47.619 23.08 0.00 0.00 4.35
579 601 2.285977 GCCTATTCCGGAAAACACGAT 58.714 47.619 23.08 5.08 0.00 3.73
895 922 4.348495 TCCACCCCACCTCCCCTC 62.348 72.222 0.00 0.00 0.00 4.30
907 934 0.563672 CTCCCCTCCCTAGCTACCTT 59.436 60.000 0.00 0.00 0.00 3.50
908 935 1.787676 CTCCCCTCCCTAGCTACCTTA 59.212 57.143 0.00 0.00 0.00 2.69
909 936 1.787676 TCCCCTCCCTAGCTACCTTAG 59.212 57.143 0.00 0.00 0.00 2.18
983 1010 0.887387 TTCTCCGGGCCGTTTTCTTG 60.887 55.000 26.32 7.53 0.00 3.02
1065 1095 2.408022 GACGGGATCACGGTCGAG 59.592 66.667 23.42 0.00 39.23 4.04
1287 1326 2.437343 GCGCTTCCTCGACAAGACG 61.437 63.158 0.00 7.38 0.00 4.18
1353 1392 3.687321 GATGAGCAAGGCCAGCGGA 62.687 63.158 5.01 0.79 37.01 5.54
1430 1488 6.393990 ACTGTGTGCTACTAATCTTTCTCTG 58.606 40.000 0.00 0.00 0.00 3.35
1437 1495 8.439286 GTGCTACTAATCTTTCTCTGTTCTTTG 58.561 37.037 0.00 0.00 0.00 2.77
1450 1508 6.372103 TCTCTGTTCTTTGAAACAAAACCGTA 59.628 34.615 0.00 0.00 38.60 4.02
1475 1533 2.959507 ATCATGTTCGATGACGGTGA 57.040 45.000 0.00 0.00 40.21 4.02
1495 1553 5.363939 GTGAGATTAAGAATGGCAGTAGCT 58.636 41.667 0.00 0.00 41.70 3.32
1497 1555 6.644592 GTGAGATTAAGAATGGCAGTAGCTAG 59.355 42.308 0.00 0.00 41.70 3.42
1498 1556 6.325028 TGAGATTAAGAATGGCAGTAGCTAGT 59.675 38.462 0.00 0.00 41.70 2.57
1500 1558 7.891561 AGATTAAGAATGGCAGTAGCTAGTAG 58.108 38.462 0.00 0.00 41.70 2.57
1502 1560 8.707796 ATTAAGAATGGCAGTAGCTAGTAGTA 57.292 34.615 0.00 0.00 41.70 1.82
1503 1561 6.642707 AAGAATGGCAGTAGCTAGTAGTAG 57.357 41.667 0.00 0.00 41.70 2.57
1504 1562 5.942961 AGAATGGCAGTAGCTAGTAGTAGA 58.057 41.667 8.87 0.00 41.70 2.59
1505 1563 5.766174 AGAATGGCAGTAGCTAGTAGTAGAC 59.234 44.000 8.87 0.00 41.70 2.59
1506 1564 4.498894 TGGCAGTAGCTAGTAGTAGACA 57.501 45.455 8.87 0.00 41.70 3.41
1507 1565 4.197750 TGGCAGTAGCTAGTAGTAGACAC 58.802 47.826 8.87 5.07 41.70 3.67
1556 1618 4.153986 CACGATTGAATCTGACAAAGTGC 58.846 43.478 3.43 0.00 35.30 4.40
1594 1656 2.771943 CCTTATGTAGTTCTGCTGGGGA 59.228 50.000 0.00 0.00 0.00 4.81
1602 1664 0.322816 TTCTGCTGGGGACATCTTGC 60.323 55.000 0.00 0.00 41.51 4.01
1768 1848 1.131126 CTTGCTGTCCCAAATAGTGCG 59.869 52.381 0.00 0.00 0.00 5.34
1769 1849 1.305219 TGCTGTCCCAAATAGTGCGC 61.305 55.000 0.00 0.00 0.00 6.09
1796 1878 6.907212 GTCAGAACACAAAATCAAGTACAGTG 59.093 38.462 0.00 0.00 0.00 3.66
1875 1959 2.804527 CCATGATACAATGTCCGCTCAG 59.195 50.000 0.00 0.00 0.00 3.35
1914 1998 0.546598 GATCCCCCAAACGGACTCAT 59.453 55.000 0.00 0.00 30.39 2.90
1927 2013 0.608640 GACTCATGGTCGGTGGACTT 59.391 55.000 0.00 0.00 42.97 3.01
1929 2015 2.232941 GACTCATGGTCGGTGGACTTAA 59.767 50.000 0.00 0.00 42.97 1.85
1935 2023 2.140717 GGTCGGTGGACTTAAACACTG 58.859 52.381 0.00 0.00 42.97 3.66
2135 2267 7.794349 GCATTTTCTTCGACATGTAAGCTATAC 59.206 37.037 0.00 0.00 0.00 1.47
2160 2293 4.194640 TCAGTCTGATTTTAGCATCAGCC 58.805 43.478 0.00 0.00 46.88 4.85
2301 2438 2.627515 TGGGATCTGCTGTATTCTGC 57.372 50.000 0.00 0.00 38.66 4.26
2310 2447 4.761227 TCTGCTGTATTCTGCAACAATGAA 59.239 37.500 5.47 0.00 45.14 2.57
2333 2470 9.829507 TGAAAAATGAATAATCAACCTGTTGTT 57.170 25.926 9.65 6.52 39.49 2.83
2484 2621 1.402968 TCGAGGTACGGCAGTAATGAC 59.597 52.381 0.00 0.00 42.82 3.06
2512 2655 1.518572 GTAGTGGTCGCCATGTCGG 60.519 63.158 0.00 0.00 35.28 4.79
2516 2663 2.047655 GGTCGCCATGTCGGAACA 60.048 61.111 0.00 0.00 40.38 3.18
2523 2670 1.134699 GCCATGTCGGAACATCAGAGA 60.135 52.381 0.00 0.00 44.41 3.10
2712 2889 1.450312 CCAGGACCATGGACTTCGC 60.450 63.158 21.47 0.00 43.57 4.70
2802 2979 1.125021 CAAGTTCGAGCAGTACAAGCG 59.875 52.381 1.01 0.00 37.01 4.68
3373 3550 5.068234 TCTGGTACAAGAAGACGGTAATG 57.932 43.478 0.00 0.00 38.70 1.90
3375 3552 5.421056 TCTGGTACAAGAAGACGGTAATGAT 59.579 40.000 0.00 0.00 38.70 2.45
3449 3630 9.528018 TTCTTTCCTGTAAATTCAAATGTTGAC 57.472 29.630 0.00 0.00 39.87 3.18
3450 3631 8.912988 TCTTTCCTGTAAATTCAAATGTTGACT 58.087 29.630 0.00 0.00 39.87 3.41
3451 3632 8.870160 TTTCCTGTAAATTCAAATGTTGACTG 57.130 30.769 0.00 0.00 39.87 3.51
3452 3633 7.815840 TCCTGTAAATTCAAATGTTGACTGA 57.184 32.000 0.00 0.00 39.87 3.41
3453 3634 8.231692 TCCTGTAAATTCAAATGTTGACTGAA 57.768 30.769 0.00 0.00 39.87 3.02
3455 3636 8.352201 CCTGTAAATTCAAATGTTGACTGAAGA 58.648 33.333 0.00 0.00 39.87 2.87
3457 3638 9.897744 TGTAAATTCAAATGTTGACTGAAGATC 57.102 29.630 0.00 0.00 39.87 2.75
3458 3639 9.055248 GTAAATTCAAATGTTGACTGAAGATCG 57.945 33.333 0.00 0.00 39.87 3.69
3459 3640 5.611796 TTCAAATGTTGACTGAAGATCGG 57.388 39.130 0.00 0.00 39.87 4.18
3460 3641 4.641396 TCAAATGTTGACTGAAGATCGGT 58.359 39.130 0.00 0.00 39.01 4.69
3486 3667 1.827344 TCGCTCAGACATGGATGTTCT 59.173 47.619 0.00 0.00 41.95 3.01
3638 4141 7.648142 TGCTGTTAGCTATTATTAACCAATGC 58.352 34.615 0.00 0.00 42.97 3.56
3649 4152 1.185315 AACCAATGCTGCCACATACC 58.815 50.000 0.00 0.00 0.00 2.73
3976 4507 1.609072 GAAAGGTCAGTTCAGGCAACC 59.391 52.381 0.00 0.00 35.28 3.77
4036 4576 5.990668 AGTAGAACAAATGTGGACTATCCC 58.009 41.667 0.00 0.00 35.03 3.85
4128 4670 3.673809 CCCTTTCGAGACTTGAAACTACG 59.326 47.826 13.01 4.86 32.29 3.51
4169 4711 2.219325 GAGGACACCAGGTGAGCTCG 62.219 65.000 27.39 0.00 36.96 5.03
4205 5246 4.086664 GCGACGCAAAATTCAGTTAGTTTC 59.913 41.667 16.42 0.00 0.00 2.78
4239 5285 9.229784 GACTTTTAATATCATCATTGCTGTGTG 57.770 33.333 0.00 0.00 0.00 3.82
4347 5393 3.451894 CTTGGGATTGGCGCCACC 61.452 66.667 32.95 27.98 39.84 4.61
4474 5530 9.202273 GCTAATGGAGATAACATAACTGAGAAG 57.798 37.037 0.00 0.00 0.00 2.85
4506 5562 1.815003 GAACAGGAGGTGGAAAGCATG 59.185 52.381 0.00 0.00 0.00 4.06
4924 5983 6.071391 TCCCATATGTCTTTGCTTCCTTTTTC 60.071 38.462 1.24 0.00 0.00 2.29
4926 5985 6.810182 CCATATGTCTTTGCTTCCTTTTTCTG 59.190 38.462 1.24 0.00 0.00 3.02
5000 6073 2.887152 AGTGTTCTCTGATTTGGCCAAC 59.113 45.455 20.35 8.61 0.00 3.77
5040 6115 6.150641 TCGTATAGGTGAGCTAAATTCGCTAT 59.849 38.462 0.00 0.00 37.96 2.97
5067 6143 5.471456 CCTTGTCATGGCAGATTTATACTCC 59.529 44.000 0.00 0.00 0.00 3.85
5068 6144 4.973168 TGTCATGGCAGATTTATACTCCC 58.027 43.478 0.00 0.00 0.00 4.30
5069 6145 4.660303 TGTCATGGCAGATTTATACTCCCT 59.340 41.667 0.00 0.00 0.00 4.20
5070 6146 5.221722 TGTCATGGCAGATTTATACTCCCTC 60.222 44.000 0.00 0.00 0.00 4.30
5071 6147 4.287067 TCATGGCAGATTTATACTCCCTCC 59.713 45.833 0.00 0.00 0.00 4.30
5072 6148 2.632996 TGGCAGATTTATACTCCCTCCG 59.367 50.000 0.00 0.00 0.00 4.63
5073 6149 2.633481 GGCAGATTTATACTCCCTCCGT 59.367 50.000 0.00 0.00 0.00 4.69
5075 6151 3.306156 GCAGATTTATACTCCCTCCGTCC 60.306 52.174 0.00 0.00 0.00 4.79
5077 6153 2.852714 TTTATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
5078 6154 2.852714 TTATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
5079 6155 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
5081 6157 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
5082 6158 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5083 6159 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5084 6160 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5085 6161 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
5086 6162 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
5087 6163 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
5088 6164 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
5089 6165 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
5090 6166 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
5091 6167 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
5092 6168 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
5093 6169 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
5094 6170 4.083484 CGTCCCAAAATAAGTGTCTCAACC 60.083 45.833 0.00 0.00 0.00 3.77
5095 6171 5.070685 GTCCCAAAATAAGTGTCTCAACCT 58.929 41.667 0.00 0.00 0.00 3.50
5096 6172 5.535030 GTCCCAAAATAAGTGTCTCAACCTT 59.465 40.000 0.00 0.00 0.00 3.50
5097 6173 6.713450 GTCCCAAAATAAGTGTCTCAACCTTA 59.287 38.462 0.00 0.00 0.00 2.69
5098 6174 6.940298 TCCCAAAATAAGTGTCTCAACCTTAG 59.060 38.462 0.00 0.00 0.00 2.18
5099 6175 6.715264 CCCAAAATAAGTGTCTCAACCTTAGT 59.285 38.462 0.00 0.00 0.00 2.24
5100 6176 7.881232 CCCAAAATAAGTGTCTCAACCTTAGTA 59.119 37.037 0.00 0.00 0.00 1.82
5101 6177 8.718734 CCAAAATAAGTGTCTCAACCTTAGTAC 58.281 37.037 0.00 0.00 0.00 2.73
5102 6178 9.268268 CAAAATAAGTGTCTCAACCTTAGTACA 57.732 33.333 0.00 0.00 0.00 2.90
5103 6179 9.841295 AAAATAAGTGTCTCAACCTTAGTACAA 57.159 29.630 0.00 0.00 0.00 2.41
5104 6180 8.828688 AATAAGTGTCTCAACCTTAGTACAAC 57.171 34.615 0.00 0.00 0.00 3.32
5105 6181 6.481434 AAGTGTCTCAACCTTAGTACAACT 57.519 37.500 0.00 0.00 0.00 3.16
5106 6182 6.481434 AGTGTCTCAACCTTAGTACAACTT 57.519 37.500 0.00 0.00 0.00 2.66
5107 6183 6.885922 AGTGTCTCAACCTTAGTACAACTTT 58.114 36.000 0.00 0.00 0.00 2.66
5108 6184 6.761714 AGTGTCTCAACCTTAGTACAACTTTG 59.238 38.462 0.00 0.00 0.00 2.77
5109 6185 6.537660 GTGTCTCAACCTTAGTACAACTTTGT 59.462 38.462 0.00 0.00 44.86 2.83
5110 6186 7.707893 GTGTCTCAACCTTAGTACAACTTTGTA 59.292 37.037 0.00 0.00 42.35 2.41
5126 6202 9.411189 ACAACTTTGTACTAACTTATTTTGGGA 57.589 29.630 0.00 0.00 40.16 4.37
5127 6203 9.673454 CAACTTTGTACTAACTTATTTTGGGAC 57.327 33.333 0.00 0.00 0.00 4.46
5128 6204 8.091385 ACTTTGTACTAACTTATTTTGGGACG 57.909 34.615 0.00 0.00 0.00 4.79
5129 6205 7.173735 ACTTTGTACTAACTTATTTTGGGACGG 59.826 37.037 0.00 0.00 0.00 4.79
5130 6206 6.357579 TGTACTAACTTATTTTGGGACGGA 57.642 37.500 0.00 0.00 0.00 4.69
5131 6207 6.400568 TGTACTAACTTATTTTGGGACGGAG 58.599 40.000 0.00 0.00 0.00 4.63
5132 6208 4.840271 ACTAACTTATTTTGGGACGGAGG 58.160 43.478 0.00 0.00 0.00 4.30
5133 6209 2.801077 ACTTATTTTGGGACGGAGGG 57.199 50.000 0.00 0.00 0.00 4.30
5134 6210 2.271777 ACTTATTTTGGGACGGAGGGA 58.728 47.619 0.00 0.00 0.00 4.20
5135 6211 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
5136 6212 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
5137 6213 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
5138 6214 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
5139 6215 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
5298 6478 1.129058 ACTTCTAAGGCCATACCCGG 58.871 55.000 5.01 0.00 40.58 5.73
5503 6709 4.601406 TGATTGTTAGGTTATGCCCCTT 57.399 40.909 0.00 0.00 38.26 3.95
5526 6732 2.565841 ACACGCAAGCTTTCTCTCTTT 58.434 42.857 0.00 0.00 45.62 2.52
5646 6852 8.367911 GGTTGAATGTCACCTGATACTGATATA 58.632 37.037 0.00 0.00 0.00 0.86
5647 6853 9.416794 GTTGAATGTCACCTGATACTGATATAG 57.583 37.037 0.00 0.00 0.00 1.31
5650 6856 9.632807 GAATGTCACCTGATACTGATATAGTTC 57.367 37.037 0.00 0.00 40.89 3.01
5673 6879 3.256960 TTTCGAGGCCTGCCCCTT 61.257 61.111 12.00 0.00 34.69 3.95
5699 6905 7.676683 TTTTAGGCTGATATACCTCTTCAGT 57.323 36.000 0.00 0.00 39.24 3.41
5700 6906 7.676683 TTTAGGCTGATATACCTCTTCAGTT 57.323 36.000 0.00 0.00 39.24 3.16
5701 6907 7.676683 TTAGGCTGATATACCTCTTCAGTTT 57.323 36.000 0.00 0.00 39.24 2.66
5702 6908 6.567602 AGGCTGATATACCTCTTCAGTTTT 57.432 37.500 0.00 0.00 39.24 2.43
5703 6909 6.963322 AGGCTGATATACCTCTTCAGTTTTT 58.037 36.000 0.00 0.00 39.24 1.94
5704 6910 7.051000 AGGCTGATATACCTCTTCAGTTTTTC 58.949 38.462 0.00 0.00 39.24 2.29
5705 6911 7.051000 GGCTGATATACCTCTTCAGTTTTTCT 58.949 38.462 3.01 0.00 39.24 2.52
5706 6912 7.554476 GGCTGATATACCTCTTCAGTTTTTCTT 59.446 37.037 3.01 0.00 39.24 2.52
5707 6913 8.951243 GCTGATATACCTCTTCAGTTTTTCTTT 58.049 33.333 3.01 0.00 39.24 2.52
5711 6917 9.807921 ATATACCTCTTCAGTTTTTCTTTTGGA 57.192 29.630 0.00 0.00 0.00 3.53
5712 6918 6.456795 ACCTCTTCAGTTTTTCTTTTGGAG 57.543 37.500 0.00 0.00 0.00 3.86
5713 6919 6.187682 ACCTCTTCAGTTTTTCTTTTGGAGA 58.812 36.000 0.00 0.00 0.00 3.71
5714 6920 6.836007 ACCTCTTCAGTTTTTCTTTTGGAGAT 59.164 34.615 0.00 0.00 33.49 2.75
5715 6921 7.013750 ACCTCTTCAGTTTTTCTTTTGGAGATC 59.986 37.037 0.00 0.00 33.49 2.75
5716 6922 7.230309 CCTCTTCAGTTTTTCTTTTGGAGATCT 59.770 37.037 0.00 0.00 33.49 2.75
5717 6923 7.934457 TCTTCAGTTTTTCTTTTGGAGATCTG 58.066 34.615 0.00 0.00 33.49 2.90
5718 6924 6.076981 TCAGTTTTTCTTTTGGAGATCTGC 57.923 37.500 7.39 7.39 33.49 4.26
5719 6925 5.593909 TCAGTTTTTCTTTTGGAGATCTGCA 59.406 36.000 13.58 13.58 33.49 4.41
5762 7181 1.637553 AGTCTCTGCATTTGATGGGGT 59.362 47.619 0.00 0.00 0.00 4.95
5782 7204 1.531602 GCCTGAAGCAACCCTGGTT 60.532 57.895 0.00 0.00 45.82 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.658799 TGGTCAACAATAAAATCTGAACAAAAA 57.341 25.926 0.00 0.00 31.00 1.94
11 12 9.311916 CTGGTCAACAATAAAATCTGAACAAAA 57.688 29.630 0.00 0.00 33.55 2.44
13 14 7.286546 TCCTGGTCAACAATAAAATCTGAACAA 59.713 33.333 0.00 0.00 33.55 2.83
14 15 6.775142 TCCTGGTCAACAATAAAATCTGAACA 59.225 34.615 0.00 0.00 32.95 3.18
15 16 7.084486 GTCCTGGTCAACAATAAAATCTGAAC 58.916 38.462 0.00 0.00 0.00 3.18
16 17 6.775142 TGTCCTGGTCAACAATAAAATCTGAA 59.225 34.615 0.00 0.00 0.00 3.02
17 18 6.303054 TGTCCTGGTCAACAATAAAATCTGA 58.697 36.000 0.00 0.00 0.00 3.27
19 20 7.781324 AATGTCCTGGTCAACAATAAAATCT 57.219 32.000 0.00 0.00 0.00 2.40
20 21 9.573133 CTTAATGTCCTGGTCAACAATAAAATC 57.427 33.333 0.00 0.00 0.00 2.17
21 22 8.034804 GCTTAATGTCCTGGTCAACAATAAAAT 58.965 33.333 0.00 0.00 0.00 1.82
23 24 6.491745 TGCTTAATGTCCTGGTCAACAATAAA 59.508 34.615 0.00 0.00 0.00 1.40
24 25 6.007076 TGCTTAATGTCCTGGTCAACAATAA 58.993 36.000 0.00 0.00 0.00 1.40
26 27 4.406456 TGCTTAATGTCCTGGTCAACAAT 58.594 39.130 0.00 0.00 0.00 2.71
27 28 3.820467 CTGCTTAATGTCCTGGTCAACAA 59.180 43.478 0.00 0.00 0.00 2.83
28 29 3.072330 TCTGCTTAATGTCCTGGTCAACA 59.928 43.478 0.00 0.00 0.00 3.33
29 30 3.437049 GTCTGCTTAATGTCCTGGTCAAC 59.563 47.826 0.00 0.00 0.00 3.18
31 32 2.027192 GGTCTGCTTAATGTCCTGGTCA 60.027 50.000 0.00 0.00 0.00 4.02
32 33 2.027192 TGGTCTGCTTAATGTCCTGGTC 60.027 50.000 0.00 0.00 0.00 4.02
33 34 1.985159 TGGTCTGCTTAATGTCCTGGT 59.015 47.619 0.00 0.00 0.00 4.00
34 35 2.787473 TGGTCTGCTTAATGTCCTGG 57.213 50.000 0.00 0.00 0.00 4.45
35 36 3.614092 ACATGGTCTGCTTAATGTCCTG 58.386 45.455 0.00 0.00 0.00 3.86
36 37 5.435686 TTACATGGTCTGCTTAATGTCCT 57.564 39.130 0.00 0.00 35.07 3.85
37 38 5.414454 TGTTTACATGGTCTGCTTAATGTCC 59.586 40.000 0.00 0.00 35.07 4.02
38 39 6.494893 TGTTTACATGGTCTGCTTAATGTC 57.505 37.500 0.00 0.00 35.07 3.06
39 40 6.264292 TGTTGTTTACATGGTCTGCTTAATGT 59.736 34.615 0.00 0.00 37.11 2.71
40 41 6.676950 TGTTGTTTACATGGTCTGCTTAATG 58.323 36.000 0.00 0.00 0.00 1.90
41 42 6.892658 TGTTGTTTACATGGTCTGCTTAAT 57.107 33.333 0.00 0.00 0.00 1.40
42 43 6.892658 ATGTTGTTTACATGGTCTGCTTAA 57.107 33.333 0.00 0.00 45.71 1.85
43 44 6.892658 AATGTTGTTTACATGGTCTGCTTA 57.107 33.333 0.00 0.00 46.75 3.09
44 45 5.789643 AATGTTGTTTACATGGTCTGCTT 57.210 34.783 0.00 0.00 46.75 3.91
45 46 5.789643 AAATGTTGTTTACATGGTCTGCT 57.210 34.783 0.00 0.00 46.75 4.24
46 47 6.089417 GCTTAAATGTTGTTTACATGGTCTGC 59.911 38.462 0.00 0.00 46.75 4.26
47 48 7.144661 TGCTTAAATGTTGTTTACATGGTCTG 58.855 34.615 0.00 0.00 46.75 3.51
48 49 7.283625 TGCTTAAATGTTGTTTACATGGTCT 57.716 32.000 0.00 0.00 46.75 3.85
49 50 7.938563 TTGCTTAAATGTTGTTTACATGGTC 57.061 32.000 0.00 0.00 46.75 4.02
50 51 7.042119 GCTTTGCTTAAATGTTGTTTACATGGT 60.042 33.333 0.00 0.00 46.75 3.55
51 52 7.171337 AGCTTTGCTTAAATGTTGTTTACATGG 59.829 33.333 0.00 0.00 40.57 3.66
52 53 8.075593 AGCTTTGCTTAAATGTTGTTTACATG 57.924 30.769 0.00 0.00 40.57 3.21
53 54 7.114811 CGAGCTTTGCTTAAATGTTGTTTACAT 59.885 33.333 0.00 0.00 43.97 2.29
54 55 6.416455 CGAGCTTTGCTTAAATGTTGTTTACA 59.584 34.615 0.00 0.00 39.88 2.41
55 56 6.613536 GCGAGCTTTGCTTAAATGTTGTTTAC 60.614 38.462 4.76 0.00 39.88 2.01
56 57 5.401079 GCGAGCTTTGCTTAAATGTTGTTTA 59.599 36.000 4.76 0.00 39.88 2.01
57 58 4.209080 GCGAGCTTTGCTTAAATGTTGTTT 59.791 37.500 4.76 0.00 39.88 2.83
58 59 3.735746 GCGAGCTTTGCTTAAATGTTGTT 59.264 39.130 4.76 0.00 39.88 2.83
59 60 3.004734 AGCGAGCTTTGCTTAAATGTTGT 59.995 39.130 8.46 0.00 40.48 3.32
60 61 3.568538 AGCGAGCTTTGCTTAAATGTTG 58.431 40.909 8.46 0.00 40.48 3.33
61 62 3.503748 AGAGCGAGCTTTGCTTAAATGTT 59.496 39.130 14.66 0.00 44.18 2.71
62 63 3.077359 AGAGCGAGCTTTGCTTAAATGT 58.923 40.909 14.66 0.00 44.18 2.71
63 64 3.754188 AGAGCGAGCTTTGCTTAAATG 57.246 42.857 14.66 0.00 44.18 2.32
64 65 4.331168 CACTAGAGCGAGCTTTGCTTAAAT 59.669 41.667 14.66 5.76 44.18 1.40
65 66 3.679980 CACTAGAGCGAGCTTTGCTTAAA 59.320 43.478 14.66 4.38 44.18 1.52
66 67 3.254060 CACTAGAGCGAGCTTTGCTTAA 58.746 45.455 14.66 6.45 44.18 1.85
67 68 2.881074 CACTAGAGCGAGCTTTGCTTA 58.119 47.619 14.66 8.84 44.18 3.09
68 69 1.719600 CACTAGAGCGAGCTTTGCTT 58.280 50.000 14.66 8.27 44.18 3.91
69 70 4.559364 AAGCACTAGAGCGAGCTTTGCT 62.559 50.000 13.57 13.57 44.22 3.91
70 71 0.739112 AGCACTAGAGCGAGCTTTGC 60.739 55.000 6.51 6.45 40.15 3.68
71 72 1.392853 CAAGCACTAGAGCGAGCTTTG 59.607 52.381 6.51 2.02 44.22 2.77
72 73 1.001406 ACAAGCACTAGAGCGAGCTTT 59.999 47.619 6.51 0.00 44.22 3.51
74 75 1.464734 TACAAGCACTAGAGCGAGCT 58.535 50.000 6.51 0.00 40.15 4.09
75 76 2.279582 TTACAAGCACTAGAGCGAGC 57.720 50.000 6.51 0.00 40.15 5.03
76 77 3.039405 CGATTACAAGCACTAGAGCGAG 58.961 50.000 6.51 6.00 40.15 5.03
77 78 2.422479 ACGATTACAAGCACTAGAGCGA 59.578 45.455 6.51 0.00 40.15 4.93
78 79 2.784380 GACGATTACAAGCACTAGAGCG 59.216 50.000 6.51 0.00 40.15 5.03
79 80 2.784380 CGACGATTACAAGCACTAGAGC 59.216 50.000 3.68 3.68 0.00 4.09
80 81 4.017380 ACGACGATTACAAGCACTAGAG 57.983 45.455 0.00 0.00 0.00 2.43
81 82 4.430137 AACGACGATTACAAGCACTAGA 57.570 40.909 0.00 0.00 0.00 2.43
82 83 5.566623 TCTAACGACGATTACAAGCACTAG 58.433 41.667 0.00 0.00 0.00 2.57
83 84 5.550232 TCTAACGACGATTACAAGCACTA 57.450 39.130 0.00 0.00 0.00 2.74
84 85 4.430137 TCTAACGACGATTACAAGCACT 57.570 40.909 0.00 0.00 0.00 4.40
85 86 4.026804 CCATCTAACGACGATTACAAGCAC 60.027 45.833 0.00 0.00 0.00 4.40
86 87 4.109766 CCATCTAACGACGATTACAAGCA 58.890 43.478 0.00 0.00 0.00 3.91
87 88 4.110482 ACCATCTAACGACGATTACAAGC 58.890 43.478 0.00 0.00 0.00 4.01
88 89 5.579718 AGACCATCTAACGACGATTACAAG 58.420 41.667 0.00 0.00 0.00 3.16
89 90 5.571784 AGACCATCTAACGACGATTACAA 57.428 39.130 0.00 0.00 0.00 2.41
90 91 5.277011 CGTAGACCATCTAACGACGATTACA 60.277 44.000 0.00 0.00 35.43 2.41
91 92 5.136020 CGTAGACCATCTAACGACGATTAC 58.864 45.833 0.00 0.00 35.43 1.89
92 93 4.212004 CCGTAGACCATCTAACGACGATTA 59.788 45.833 0.00 0.00 35.43 1.75
93 94 3.003068 CCGTAGACCATCTAACGACGATT 59.997 47.826 0.00 0.00 35.43 3.34
94 95 2.547211 CCGTAGACCATCTAACGACGAT 59.453 50.000 0.00 0.00 35.43 3.73
95 96 1.935873 CCGTAGACCATCTAACGACGA 59.064 52.381 0.00 0.00 35.43 4.20
96 97 1.935873 TCCGTAGACCATCTAACGACG 59.064 52.381 0.00 0.00 29.58 5.12
97 98 3.331251 GTCCGTAGACCATCTAACGAC 57.669 52.381 0.00 4.56 37.00 4.34
108 109 3.454371 AATACATGCAGGTCCGTAGAC 57.546 47.619 7.56 0.00 42.73 2.59
109 110 4.481368 AAAATACATGCAGGTCCGTAGA 57.519 40.909 7.56 0.00 0.00 2.59
134 135 9.623000 ATGGTAGTACAAAGAACACTAAAAGTT 57.377 29.630 2.06 0.00 0.00 2.66
139 140 9.701098 CTGTTATGGTAGTACAAAGAACACTAA 57.299 33.333 9.92 0.00 0.00 2.24
140 141 8.863086 ACTGTTATGGTAGTACAAAGAACACTA 58.137 33.333 9.92 0.00 0.00 2.74
141 142 7.732996 ACTGTTATGGTAGTACAAAGAACACT 58.267 34.615 9.92 2.22 0.00 3.55
142 143 7.958053 ACTGTTATGGTAGTACAAAGAACAC 57.042 36.000 9.92 0.00 0.00 3.32
143 144 8.205512 TCAACTGTTATGGTAGTACAAAGAACA 58.794 33.333 12.25 12.25 0.00 3.18
144 145 8.597662 TCAACTGTTATGGTAGTACAAAGAAC 57.402 34.615 2.06 4.49 0.00 3.01
156 157 9.407380 TGCAATCTATTTATCAACTGTTATGGT 57.593 29.630 0.00 0.00 0.00 3.55
164 165 9.860898 GGAAAACTTGCAATCTATTTATCAACT 57.139 29.630 0.00 0.00 0.00 3.16
165 166 9.860898 AGGAAAACTTGCAATCTATTTATCAAC 57.139 29.630 0.00 0.00 0.00 3.18
167 168 8.397906 CGAGGAAAACTTGCAATCTATTTATCA 58.602 33.333 0.00 0.00 0.00 2.15
168 169 8.773762 CGAGGAAAACTTGCAATCTATTTATC 57.226 34.615 0.00 1.52 0.00 1.75
197 198 7.143514 ACATGTTTGCTTGAATGTTGTTTTT 57.856 28.000 0.00 0.00 28.99 1.94
198 199 6.740411 ACATGTTTGCTTGAATGTTGTTTT 57.260 29.167 0.00 0.00 28.99 2.43
199 200 6.740411 AACATGTTTGCTTGAATGTTGTTT 57.260 29.167 4.92 0.00 40.71 2.83
200 201 7.465781 GCTTAACATGTTTGCTTGAATGTTGTT 60.466 33.333 17.78 0.00 41.88 2.83
201 202 6.018832 GCTTAACATGTTTGCTTGAATGTTGT 60.019 34.615 17.78 0.00 41.88 3.32
202 203 6.018913 TGCTTAACATGTTTGCTTGAATGTTG 60.019 34.615 25.75 4.38 41.88 3.33
203 204 6.047870 TGCTTAACATGTTTGCTTGAATGTT 58.952 32.000 25.75 11.33 43.64 2.71
204 205 5.599732 TGCTTAACATGTTTGCTTGAATGT 58.400 33.333 25.75 1.67 34.79 2.71
205 206 6.715344 ATGCTTAACATGTTTGCTTGAATG 57.285 33.333 25.75 9.58 37.70 2.67
231 232 9.283768 TGATGCATACGACCATTCTAAAAATAT 57.716 29.630 0.00 0.00 0.00 1.28
232 233 8.669946 TGATGCATACGACCATTCTAAAAATA 57.330 30.769 0.00 0.00 0.00 1.40
233 234 7.566760 TGATGCATACGACCATTCTAAAAAT 57.433 32.000 0.00 0.00 0.00 1.82
234 235 6.993786 TGATGCATACGACCATTCTAAAAA 57.006 33.333 0.00 0.00 0.00 1.94
235 236 6.204688 GGATGATGCATACGACCATTCTAAAA 59.795 38.462 0.00 0.00 0.00 1.52
236 237 5.700832 GGATGATGCATACGACCATTCTAAA 59.299 40.000 0.00 0.00 0.00 1.85
237 238 5.221621 TGGATGATGCATACGACCATTCTAA 60.222 40.000 0.00 0.00 0.00 2.10
238 239 4.283212 TGGATGATGCATACGACCATTCTA 59.717 41.667 0.00 0.00 0.00 2.10
239 240 3.071457 TGGATGATGCATACGACCATTCT 59.929 43.478 0.00 0.00 0.00 2.40
240 241 3.402110 TGGATGATGCATACGACCATTC 58.598 45.455 0.00 0.00 0.00 2.67
241 242 3.071457 TCTGGATGATGCATACGACCATT 59.929 43.478 0.00 0.00 0.00 3.16
242 243 2.634453 TCTGGATGATGCATACGACCAT 59.366 45.455 0.00 0.00 0.00 3.55
243 244 2.038659 TCTGGATGATGCATACGACCA 58.961 47.619 0.00 6.69 0.00 4.02
244 245 2.820059 TCTGGATGATGCATACGACC 57.180 50.000 0.00 1.87 0.00 4.79
254 255 2.369203 CTGGTCTCTGCATCTGGATGAT 59.631 50.000 13.96 0.00 41.20 2.45
255 256 1.761198 CTGGTCTCTGCATCTGGATGA 59.239 52.381 13.96 0.04 41.20 2.92
256 257 1.202663 CCTGGTCTCTGCATCTGGATG 60.203 57.143 6.24 6.24 41.60 3.51
257 258 1.129917 CCTGGTCTCTGCATCTGGAT 58.870 55.000 0.00 0.00 0.00 3.41
258 259 0.979709 CCCTGGTCTCTGCATCTGGA 60.980 60.000 0.00 0.00 0.00 3.86
259 260 1.525923 CCCTGGTCTCTGCATCTGG 59.474 63.158 0.00 0.00 0.00 3.86
260 261 1.270414 ACCCCTGGTCTCTGCATCTG 61.270 60.000 0.00 0.00 0.00 2.90
261 262 1.081833 ACCCCTGGTCTCTGCATCT 59.918 57.895 0.00 0.00 0.00 2.90
262 263 3.732938 ACCCCTGGTCTCTGCATC 58.267 61.111 0.00 0.00 0.00 3.91
299 300 4.023450 GCGAAAACAGGGTAGTAGCTTTTT 60.023 41.667 0.00 3.53 0.00 1.94
300 301 3.501062 GCGAAAACAGGGTAGTAGCTTTT 59.499 43.478 0.00 0.00 0.00 2.27
301 302 3.072211 GCGAAAACAGGGTAGTAGCTTT 58.928 45.455 0.00 0.00 0.00 3.51
302 303 2.038033 TGCGAAAACAGGGTAGTAGCTT 59.962 45.455 0.00 0.00 0.00 3.74
303 304 1.621814 TGCGAAAACAGGGTAGTAGCT 59.378 47.619 0.00 0.00 0.00 3.32
304 305 2.088950 TGCGAAAACAGGGTAGTAGC 57.911 50.000 0.00 0.00 0.00 3.58
305 306 2.410730 CGTTGCGAAAACAGGGTAGTAG 59.589 50.000 0.00 0.00 0.00 2.57
306 307 2.035704 TCGTTGCGAAAACAGGGTAGTA 59.964 45.455 0.00 0.00 31.06 1.82
307 308 1.202557 TCGTTGCGAAAACAGGGTAGT 60.203 47.619 0.00 0.00 31.06 2.73
308 309 1.459592 CTCGTTGCGAAAACAGGGTAG 59.540 52.381 0.00 0.00 34.74 3.18
309 310 1.504359 CTCGTTGCGAAAACAGGGTA 58.496 50.000 0.00 0.00 34.74 3.69
310 311 1.164041 CCTCGTTGCGAAAACAGGGT 61.164 55.000 0.00 0.00 34.74 4.34
311 312 1.574428 CCTCGTTGCGAAAACAGGG 59.426 57.895 0.00 0.00 34.74 4.45
312 313 1.082104 GCCTCGTTGCGAAAACAGG 60.082 57.895 11.82 11.82 34.74 4.00
313 314 0.384725 CTGCCTCGTTGCGAAAACAG 60.385 55.000 0.00 0.00 34.74 3.16
314 315 1.646540 CTGCCTCGTTGCGAAAACA 59.353 52.632 0.00 0.00 34.74 2.83
315 316 1.082104 CCTGCCTCGTTGCGAAAAC 60.082 57.895 0.00 0.00 34.74 2.43
331 332 1.834822 GAGGGGTAGATCGCTGCCT 60.835 63.158 0.00 0.00 45.29 4.75
343 344 2.055579 AGAGAAGGAAAAACGAGGGGT 58.944 47.619 0.00 0.00 0.00 4.95
348 349 1.420138 AGGGCAGAGAAGGAAAAACGA 59.580 47.619 0.00 0.00 0.00 3.85
350 351 2.163509 GGAGGGCAGAGAAGGAAAAAC 58.836 52.381 0.00 0.00 0.00 2.43
356 357 0.543749 AAATCGGAGGGCAGAGAAGG 59.456 55.000 0.00 0.00 0.00 3.46
444 460 4.057428 GCTCGACGTGGACTGGCT 62.057 66.667 0.00 0.00 0.00 4.75
498 520 1.344065 TGATGGTGGACGTTAGGTGT 58.656 50.000 0.00 0.00 0.00 4.16
546 568 0.679960 AATAGGCAAAGGTCCGTGGC 60.680 55.000 12.56 12.56 40.46 5.01
553 575 2.823747 GTTTTCCGGAATAGGCAAAGGT 59.176 45.455 19.62 0.00 27.61 3.50
567 589 3.795101 AGCTTATCGTATCGTGTTTTCCG 59.205 43.478 0.00 0.00 0.00 4.30
572 594 3.558829 TCGAGAGCTTATCGTATCGTGTT 59.441 43.478 18.27 0.00 40.95 3.32
574 596 3.471495 GTCGAGAGCTTATCGTATCGTG 58.529 50.000 18.27 0.00 40.95 4.35
575 597 2.155347 CGTCGAGAGCTTATCGTATCGT 59.845 50.000 18.27 0.00 40.95 3.73
576 598 2.748808 CGTCGAGAGCTTATCGTATCG 58.251 52.381 18.27 16.62 40.95 2.92
577 599 2.096367 TGCGTCGAGAGCTTATCGTATC 60.096 50.000 18.27 11.13 40.95 2.24
578 600 1.871676 TGCGTCGAGAGCTTATCGTAT 59.128 47.619 18.27 0.00 40.95 3.06
579 601 1.004185 GTGCGTCGAGAGCTTATCGTA 60.004 52.381 18.27 6.34 40.95 3.43
631 656 0.243636 CACCACCCTGGCGAAATTTC 59.756 55.000 8.20 8.20 42.67 2.17
655 680 4.615815 GATGCGGGATCTGCGGCT 62.616 66.667 0.00 0.00 34.24 5.52
895 922 2.243810 CCTGCTCTAAGGTAGCTAGGG 58.756 57.143 0.00 0.00 40.73 3.53
896 923 1.616374 GCCTGCTCTAAGGTAGCTAGG 59.384 57.143 0.00 0.00 40.73 3.02
926 953 4.537433 GCTCGCCGGAAGCTGGAT 62.537 66.667 18.96 0.00 40.39 3.41
964 991 0.887387 CAAGAAAACGGCCCGGAGAA 60.887 55.000 8.57 0.00 0.00 2.87
1287 1326 3.787001 CCCTCCTTGCTCCCGGAC 61.787 72.222 0.73 0.00 0.00 4.79
1430 1488 5.803461 AGCTTACGGTTTTGTTTCAAAGAAC 59.197 36.000 0.00 0.00 0.00 3.01
1437 1495 7.081976 ACATGATTAGCTTACGGTTTTGTTTC 58.918 34.615 0.00 0.00 0.00 2.78
1450 1508 3.804325 CCGTCATCGAACATGATTAGCTT 59.196 43.478 0.00 0.00 39.71 3.74
1475 1533 6.739331 ACTAGCTACTGCCATTCTTAATCT 57.261 37.500 0.00 0.00 40.80 2.40
1495 1553 9.472361 GAAATCAACTGTTTGTGTCTACTACTA 57.528 33.333 0.00 0.00 34.02 1.82
1497 1555 8.366671 AGAAATCAACTGTTTGTGTCTACTAC 57.633 34.615 0.00 0.00 34.02 2.73
1588 1650 1.171308 CAACAGCAAGATGTCCCCAG 58.829 55.000 0.00 0.00 31.50 4.45
1594 1656 1.542915 GTGGATGCAACAGCAAGATGT 59.457 47.619 0.00 0.00 42.37 3.06
1602 1664 4.330620 GCATAAAAATGGTGGATGCAACAG 59.669 41.667 11.67 0.00 41.98 3.16
1768 1848 3.243068 ACTTGATTTTGTGTTCTGACCGC 60.243 43.478 0.00 0.00 0.00 5.68
1769 1849 4.552166 ACTTGATTTTGTGTTCTGACCG 57.448 40.909 0.00 0.00 0.00 4.79
1875 1959 5.927115 GGATCCATGGACGTATTACTTCTTC 59.073 44.000 18.99 5.56 0.00 2.87
1909 1993 1.933021 TAAGTCCACCGACCATGAGT 58.067 50.000 0.00 0.00 40.12 3.41
1914 1998 1.764134 AGTGTTTAAGTCCACCGACCA 59.236 47.619 0.00 0.00 40.12 4.02
2135 2267 5.784750 TGATGCTAAAATCAGACTGAACG 57.215 39.130 9.70 0.00 32.75 3.95
2160 2293 2.266554 GTTCGACTGATGAGCTCCAAG 58.733 52.381 12.15 8.50 0.00 3.61
2332 2469 3.462982 TGTCAGCAGCGAGTAAAAAGAA 58.537 40.909 0.00 0.00 0.00 2.52
2333 2470 3.059884 CTGTCAGCAGCGAGTAAAAAGA 58.940 45.455 0.00 0.00 35.77 2.52
2334 2471 2.158449 CCTGTCAGCAGCGAGTAAAAAG 59.842 50.000 0.00 0.00 41.26 2.27
2484 2621 2.613133 GGCGACCACTACTAGTAGTCTG 59.387 54.545 28.86 23.94 43.98 3.51
2512 2655 0.179150 ACTCGCGCTCTCTGATGTTC 60.179 55.000 5.56 0.00 0.00 3.18
2516 2663 2.712539 CGACTCGCGCTCTCTGAT 59.287 61.111 5.56 0.00 0.00 2.90
2712 2889 1.738099 CGCTTCCAGTTCTCGTGGG 60.738 63.158 0.00 0.00 35.58 4.61
3151 3328 3.567643 ATCATGAGGATGCCGGTGACG 62.568 57.143 1.90 0.00 44.55 4.35
3373 3550 2.103941 CAGTAAGGAGGGCAGAGGAATC 59.896 54.545 0.00 0.00 0.00 2.52
3375 3552 1.078823 TCAGTAAGGAGGGCAGAGGAA 59.921 52.381 0.00 0.00 0.00 3.36
3406 3583 8.612619 CAGGAAAGAAAAGCATTATATACGTGT 58.387 33.333 0.00 0.00 0.00 4.49
3449 3630 2.480419 AGCGAACAAAACCGATCTTCAG 59.520 45.455 0.00 0.00 0.00 3.02
3450 3631 2.478894 GAGCGAACAAAACCGATCTTCA 59.521 45.455 0.00 0.00 38.08 3.02
3451 3632 2.478894 TGAGCGAACAAAACCGATCTTC 59.521 45.455 0.00 0.00 41.19 2.87
3452 3633 2.480419 CTGAGCGAACAAAACCGATCTT 59.520 45.455 0.00 0.00 41.19 2.40
3453 3634 2.069273 CTGAGCGAACAAAACCGATCT 58.931 47.619 0.00 0.00 41.19 2.75
3455 3636 1.798813 GTCTGAGCGAACAAAACCGAT 59.201 47.619 0.00 0.00 0.00 4.18
3457 3638 0.934496 TGTCTGAGCGAACAAAACCG 59.066 50.000 0.00 0.00 0.00 4.44
3458 3639 2.350772 CCATGTCTGAGCGAACAAAACC 60.351 50.000 0.00 0.00 0.00 3.27
3459 3640 2.548057 TCCATGTCTGAGCGAACAAAAC 59.452 45.455 0.00 0.00 0.00 2.43
3460 3641 2.844946 TCCATGTCTGAGCGAACAAAA 58.155 42.857 0.00 0.00 0.00 2.44
3486 3667 4.338795 AGAAGAGGACAGGGACTATCAA 57.661 45.455 0.00 0.00 30.46 2.57
3649 4152 0.029834 GGTAAATCGCAGCCTGCATG 59.970 55.000 18.21 0.85 45.36 4.06
3945 4476 3.617284 ACTGACCTTTCCGAACAAGTTT 58.383 40.909 0.00 0.00 0.00 2.66
3976 4507 8.470040 AATAGTGAATAAGCATTTGCAGTTTG 57.530 30.769 5.20 0.00 45.16 2.93
4069 4611 1.280746 CTTGTGCCTCGCAACACTG 59.719 57.895 0.00 0.00 41.47 3.66
4070 4612 0.748005 AACTTGTGCCTCGCAACACT 60.748 50.000 0.00 0.00 41.47 3.55
4152 4694 2.100879 AACGAGCTCACCTGGTGTCC 62.101 60.000 25.15 16.87 32.40 4.02
4169 4711 3.458779 TGCGTCGCCAAATAGTTAAAC 57.541 42.857 15.88 0.00 0.00 2.01
4239 5285 3.583526 AGACCTTAGGAAACCTGAAGGAC 59.416 47.826 21.19 17.47 36.96 3.85
4410 5456 6.639632 AATGTTGAGAATACTTTGCAGTGT 57.360 33.333 0.00 0.00 34.06 3.55
4474 5530 3.054802 ACCTCCTGTTCCATCAACTCATC 60.055 47.826 0.00 0.00 35.79 2.92
4506 5562 0.175760 TGCCTATCTCAGAACCGTGC 59.824 55.000 0.00 0.00 0.00 5.34
4614 5670 0.635731 GATCGTTGTCAGCGACTTCG 59.364 55.000 14.27 12.14 41.33 3.79
4924 5983 7.117956 TCCGAATCTACAAGAGACGTATATCAG 59.882 40.741 0.00 0.00 36.87 2.90
4926 5985 7.095313 TGTCCGAATCTACAAGAGACGTATATC 60.095 40.741 0.00 0.00 36.87 1.63
5000 6073 0.242825 TACGAGAGTTCTTGTGGGCG 59.757 55.000 11.47 0.00 46.40 6.13
5040 6115 7.573710 AGTATAAATCTGCCATGACAAGGTTA 58.426 34.615 0.00 0.00 0.00 2.85
5067 6143 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
5068 6144 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
5069 6145 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
5070 6146 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
5071 6147 4.083484 GGTTGAGACACTTATTTTGGGACG 60.083 45.833 0.00 0.00 0.00 4.79
5072 6148 5.070685 AGGTTGAGACACTTATTTTGGGAC 58.929 41.667 0.00 0.00 0.00 4.46
5073 6149 5.319043 AGGTTGAGACACTTATTTTGGGA 57.681 39.130 0.00 0.00 0.00 4.37
5075 6151 7.745620 ACTAAGGTTGAGACACTTATTTTGG 57.254 36.000 0.00 0.00 0.00 3.28
5077 6153 9.841295 TTGTACTAAGGTTGAGACACTTATTTT 57.159 29.630 0.00 0.00 0.00 1.82
5078 6154 9.269453 GTTGTACTAAGGTTGAGACACTTATTT 57.731 33.333 0.00 0.00 0.00 1.40
5079 6155 8.648693 AGTTGTACTAAGGTTGAGACACTTATT 58.351 33.333 0.00 0.00 0.00 1.40
5081 6157 7.592885 AGTTGTACTAAGGTTGAGACACTTA 57.407 36.000 0.00 0.00 0.00 2.24
5082 6158 6.481434 AGTTGTACTAAGGTTGAGACACTT 57.519 37.500 0.00 0.00 0.00 3.16
5083 6159 6.481434 AAGTTGTACTAAGGTTGAGACACT 57.519 37.500 0.00 0.00 0.00 3.55
5084 6160 6.537660 ACAAAGTTGTACTAAGGTTGAGACAC 59.462 38.462 0.00 0.00 40.16 3.67
5085 6161 6.646267 ACAAAGTTGTACTAAGGTTGAGACA 58.354 36.000 0.00 0.00 40.16 3.41
5100 6176 9.411189 TCCCAAAATAAGTTAGTACAAAGTTGT 57.589 29.630 1.75 1.75 44.86 3.32
5101 6177 9.673454 GTCCCAAAATAAGTTAGTACAAAGTTG 57.327 33.333 0.00 0.00 0.00 3.16
5102 6178 8.562052 CGTCCCAAAATAAGTTAGTACAAAGTT 58.438 33.333 0.00 0.00 0.00 2.66
5103 6179 7.173735 CCGTCCCAAAATAAGTTAGTACAAAGT 59.826 37.037 0.00 0.00 0.00 2.66
5104 6180 7.388500 TCCGTCCCAAAATAAGTTAGTACAAAG 59.612 37.037 0.00 0.00 0.00 2.77
5105 6181 7.222872 TCCGTCCCAAAATAAGTTAGTACAAA 58.777 34.615 0.00 0.00 0.00 2.83
5106 6182 6.767456 TCCGTCCCAAAATAAGTTAGTACAA 58.233 36.000 0.00 0.00 0.00 2.41
5107 6183 6.357579 TCCGTCCCAAAATAAGTTAGTACA 57.642 37.500 0.00 0.00 0.00 2.90
5108 6184 5.814188 CCTCCGTCCCAAAATAAGTTAGTAC 59.186 44.000 0.00 0.00 0.00 2.73
5109 6185 5.104817 CCCTCCGTCCCAAAATAAGTTAGTA 60.105 44.000 0.00 0.00 0.00 1.82
5110 6186 4.324022 CCCTCCGTCCCAAAATAAGTTAGT 60.324 45.833 0.00 0.00 0.00 2.24
5111 6187 4.080751 TCCCTCCGTCCCAAAATAAGTTAG 60.081 45.833 0.00 0.00 0.00 2.34
5112 6188 3.845398 TCCCTCCGTCCCAAAATAAGTTA 59.155 43.478 0.00 0.00 0.00 2.24
5113 6189 2.645797 TCCCTCCGTCCCAAAATAAGTT 59.354 45.455 0.00 0.00 0.00 2.66
5114 6190 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
5115 6191 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5116 6192 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5117 6193 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5118 6194 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
5119 6195 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
5120 6196 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
5121 6197 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
5122 6198 0.549950 CTAGTACTCCCTCCGTCCCA 59.450 60.000 0.00 0.00 0.00 4.37
5123 6199 0.842635 TCTAGTACTCCCTCCGTCCC 59.157 60.000 0.00 0.00 0.00 4.46
5124 6200 1.211457 TGTCTAGTACTCCCTCCGTCC 59.789 57.143 0.00 0.00 0.00 4.79
5125 6201 2.093021 ACTGTCTAGTACTCCCTCCGTC 60.093 54.545 0.00 0.00 34.74 4.79
5126 6202 1.914798 ACTGTCTAGTACTCCCTCCGT 59.085 52.381 0.00 0.00 34.74 4.69
5127 6203 2.290464 CACTGTCTAGTACTCCCTCCG 58.710 57.143 0.00 0.00 34.74 4.63
5128 6204 2.025898 GCACTGTCTAGTACTCCCTCC 58.974 57.143 0.00 0.00 34.74 4.30
5129 6205 2.724454 TGCACTGTCTAGTACTCCCTC 58.276 52.381 0.00 0.00 34.74 4.30
5130 6206 2.901338 TGCACTGTCTAGTACTCCCT 57.099 50.000 0.00 0.00 34.74 4.20
5131 6207 4.645588 ACTATTGCACTGTCTAGTACTCCC 59.354 45.833 0.00 0.00 34.74 4.30
5132 6208 5.838531 ACTATTGCACTGTCTAGTACTCC 57.161 43.478 0.00 0.00 34.74 3.85
5133 6209 8.242053 TGTTAACTATTGCACTGTCTAGTACTC 58.758 37.037 7.22 0.00 34.74 2.59
5134 6210 8.118976 TGTTAACTATTGCACTGTCTAGTACT 57.881 34.615 7.22 0.00 34.74 2.73
5135 6211 8.808529 CATGTTAACTATTGCACTGTCTAGTAC 58.191 37.037 7.22 0.00 34.74 2.73
5136 6212 8.528643 ACATGTTAACTATTGCACTGTCTAGTA 58.471 33.333 7.22 0.00 34.74 1.82
5137 6213 7.386851 ACATGTTAACTATTGCACTGTCTAGT 58.613 34.615 7.22 0.00 37.75 2.57
5138 6214 7.834068 ACATGTTAACTATTGCACTGTCTAG 57.166 36.000 7.22 0.00 0.00 2.43
5139 6215 8.308207 TGTACATGTTAACTATTGCACTGTCTA 58.692 33.333 2.30 0.00 0.00 2.59
5298 6478 8.976986 ATATCTGCAAACTGTTTGAAATTCTC 57.023 30.769 31.35 15.22 43.26 2.87
5503 6709 1.867233 GAGAGAAAGCTTGCGTGTTCA 59.133 47.619 0.00 0.00 0.00 3.18
5526 6732 3.391296 AGACTGTCAGGGCAGAAAAACTA 59.609 43.478 8.06 0.00 39.62 2.24
5646 6852 2.432510 CAGGCCTCGAAAGGATAGAACT 59.567 50.000 0.00 0.00 46.67 3.01
5647 6853 2.827652 CAGGCCTCGAAAGGATAGAAC 58.172 52.381 0.00 0.00 46.67 3.01
5650 6856 0.250081 GGCAGGCCTCGAAAGGATAG 60.250 60.000 0.00 0.00 46.67 2.08
5679 6885 6.567602 AAAACTGAAGAGGTATATCAGCCT 57.432 37.500 2.13 0.00 43.41 4.58
5680 6886 7.051000 AGAAAAACTGAAGAGGTATATCAGCC 58.949 38.462 2.13 0.00 43.41 4.85
5681 6887 8.499403 AAGAAAAACTGAAGAGGTATATCAGC 57.501 34.615 2.13 0.00 43.41 4.26
5685 6891 9.807921 TCCAAAAGAAAAACTGAAGAGGTATAT 57.192 29.630 0.00 0.00 0.00 0.86
5686 6892 9.284968 CTCCAAAAGAAAAACTGAAGAGGTATA 57.715 33.333 0.00 0.00 0.00 1.47
5687 6893 7.998964 TCTCCAAAAGAAAAACTGAAGAGGTAT 59.001 33.333 0.00 0.00 0.00 2.73
5688 6894 7.343357 TCTCCAAAAGAAAAACTGAAGAGGTA 58.657 34.615 0.00 0.00 0.00 3.08
5689 6895 6.187682 TCTCCAAAAGAAAAACTGAAGAGGT 58.812 36.000 0.00 0.00 0.00 3.85
5690 6896 6.699575 TCTCCAAAAGAAAAACTGAAGAGG 57.300 37.500 0.00 0.00 0.00 3.69
5691 6897 8.074972 CAGATCTCCAAAAGAAAAACTGAAGAG 58.925 37.037 0.00 0.00 37.61 2.85
5692 6898 7.469181 GCAGATCTCCAAAAGAAAAACTGAAGA 60.469 37.037 0.00 0.00 37.61 2.87
5693 6899 6.640092 GCAGATCTCCAAAAGAAAAACTGAAG 59.360 38.462 0.00 0.00 37.61 3.02
5694 6900 6.096705 TGCAGATCTCCAAAAGAAAAACTGAA 59.903 34.615 0.00 0.00 37.61 3.02
5695 6901 5.593909 TGCAGATCTCCAAAAGAAAAACTGA 59.406 36.000 0.00 0.00 37.61 3.41
5696 6902 5.835257 TGCAGATCTCCAAAAGAAAAACTG 58.165 37.500 0.00 0.00 37.61 3.16
5697 6903 6.492772 AGATGCAGATCTCCAAAAGAAAAACT 59.507 34.615 0.00 0.00 37.61 2.66
5698 6904 6.685657 AGATGCAGATCTCCAAAAGAAAAAC 58.314 36.000 0.00 0.00 37.61 2.43
5699 6905 6.906157 AGATGCAGATCTCCAAAAGAAAAA 57.094 33.333 0.00 0.00 37.61 1.94
5700 6906 6.491062 TGAAGATGCAGATCTCCAAAAGAAAA 59.509 34.615 0.00 0.00 38.03 2.29
5701 6907 6.005823 TGAAGATGCAGATCTCCAAAAGAAA 58.994 36.000 0.00 0.00 38.03 2.52
5702 6908 5.563592 TGAAGATGCAGATCTCCAAAAGAA 58.436 37.500 0.00 0.00 38.03 2.52
5703 6909 5.169992 TGAAGATGCAGATCTCCAAAAGA 57.830 39.130 0.00 0.00 38.03 2.52
5704 6910 4.942483 ACTGAAGATGCAGATCTCCAAAAG 59.058 41.667 0.00 0.00 38.03 2.27
5705 6911 4.914983 ACTGAAGATGCAGATCTCCAAAA 58.085 39.130 0.00 0.00 38.03 2.44
5706 6912 4.564782 ACTGAAGATGCAGATCTCCAAA 57.435 40.909 0.00 0.00 38.03 3.28
5707 6913 4.564782 AACTGAAGATGCAGATCTCCAA 57.435 40.909 0.00 0.00 38.03 3.53
5708 6914 4.564782 AAACTGAAGATGCAGATCTCCA 57.435 40.909 0.00 0.00 38.03 3.86
5709 6915 5.647225 AGAAAAACTGAAGATGCAGATCTCC 59.353 40.000 0.00 0.00 38.03 3.71
5710 6916 6.740411 AGAAAAACTGAAGATGCAGATCTC 57.260 37.500 0.00 0.00 38.03 2.75
5762 7181 2.032528 CAGGGTTGCTTCAGGCGA 59.967 61.111 0.00 0.00 45.43 5.54
5782 7204 3.637911 ACAGTCAAACAACCTACCACA 57.362 42.857 0.00 0.00 0.00 4.17
6177 7623 2.556114 CCCAGACTTGCCTCCTGATTTT 60.556 50.000 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.